Query 026915
Match_columns 231
No_of_seqs 310 out of 1679
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 01:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 4.3E-22 1.5E-26 149.7 11.1 80 132-216 19-98 (99)
2 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-20 6.1E-25 143.2 13.2 85 131-220 24-108 (115)
3 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.3E-25 138.6 11.8 80 131-215 15-94 (94)
4 2dnz_A Probable RNA-binding pr 99.8 2.1E-20 7.3E-25 137.6 12.8 85 131-220 4-88 (95)
5 4f25_A Polyadenylate-binding p 99.8 7.1E-21 2.4E-25 146.2 10.5 80 132-218 5-84 (115)
6 3s8s_A Histone-lysine N-methyl 99.8 1.3E-20 4.4E-25 144.4 11.9 81 132-217 6-86 (110)
7 2d9p_A Polyadenylate-binding p 99.8 2.9E-20 9.8E-25 139.2 13.5 86 130-222 13-98 (103)
8 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-20 1.1E-24 139.1 13.9 86 131-220 14-100 (105)
9 2cq0_A Eukaryotic translation 99.8 2.7E-20 9.3E-25 139.3 12.9 86 131-221 14-99 (103)
10 1x4a_A Splicing factor, argini 99.8 3.5E-20 1.2E-24 140.2 13.4 82 131-220 21-102 (109)
11 2dnm_A SRP46 splicing factor; 99.8 1.9E-20 6.4E-25 140.2 11.5 85 131-220 12-96 (103)
12 1x5u_A Splicing factor 3B subu 99.8 2.8E-20 9.6E-25 139.5 12.4 86 130-220 13-98 (105)
13 2do4_A Squamous cell carcinoma 99.8 5.5E-20 1.9E-24 136.9 13.8 83 131-219 16-98 (100)
14 2la6_A RNA-binding protein FUS 99.8 2.7E-20 9.3E-25 138.5 12.0 84 127-215 8-99 (99)
15 2lkz_A RNA-binding protein 5; 99.8 4.3E-21 1.5E-25 143.8 7.4 80 132-216 9-94 (95)
16 2cqc_A Arginine/serine-rich sp 99.8 2.8E-20 9.6E-25 136.7 11.6 81 131-216 14-94 (95)
17 2khc_A Testis-specific RNP-typ 99.8 3.8E-20 1.3E-24 141.8 12.7 80 131-215 39-118 (118)
18 2lxi_A RNA-binding protein 10; 99.8 2.3E-21 7.7E-26 143.4 5.6 82 132-218 1-84 (91)
19 2cq3_A RNA-binding protein 9; 99.8 6.9E-20 2.4E-24 137.1 13.8 83 131-220 14-96 (103)
20 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-20 6.9E-25 135.4 10.5 82 131-217 5-86 (87)
21 2cqi_A Nucleolysin TIAR; RNA r 99.8 5E-20 1.7E-24 137.8 12.8 83 131-220 14-96 (103)
22 1x4h_A RNA-binding protein 28; 99.8 5.4E-20 1.9E-24 139.1 13.0 86 130-220 13-104 (111)
23 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-20 7.3E-25 140.4 10.7 88 130-220 11-99 (106)
24 2dgs_A DAZ-associated protein 99.8 7E-20 2.4E-24 136.1 13.4 84 131-220 9-92 (99)
25 2cph_A RNA binding motif prote 99.8 5.5E-20 1.9E-24 138.2 12.8 86 131-221 14-101 (107)
26 2ywk_A Putative RNA-binding pr 99.8 1.8E-20 6.1E-25 138.0 9.9 80 131-216 15-94 (95)
27 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6E-25 138.3 9.6 88 131-223 4-92 (96)
28 2do0_A HnRNP M, heterogeneous 99.8 1.1E-19 3.8E-24 138.1 14.4 83 131-219 14-96 (114)
29 3md1_A Nuclear and cytoplasmic 99.8 4.6E-20 1.6E-24 132.4 11.6 82 132-218 1-82 (83)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.2E-20 1.1E-24 138.5 11.0 87 131-222 11-97 (102)
31 2dng_A Eukaryotic translation 99.8 7E-20 2.4E-24 137.2 12.8 87 127-220 10-96 (103)
32 1x5s_A Cold-inducible RNA-bind 99.8 3.9E-20 1.3E-24 138.1 11.2 85 131-220 11-95 (102)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.7E-20 9.1E-25 134.2 9.9 80 131-215 6-85 (85)
34 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-20 2.7E-24 139.3 13.1 84 131-219 14-97 (115)
35 1whw_A Hypothetical protein ri 99.8 6.2E-20 2.1E-24 136.2 11.7 85 131-220 7-91 (99)
36 1wi8_A EIF-4B, eukaryotic tran 99.8 6.3E-20 2.2E-24 137.7 11.8 88 127-220 10-97 (104)
37 2dgv_A HnRNP M, heterogeneous 99.8 6.1E-20 2.1E-24 134.4 11.2 81 131-218 7-87 (92)
38 2cpf_A RNA binding motif prote 99.8 4.6E-20 1.6E-24 136.7 10.5 88 131-220 4-91 (98)
39 2x1f_A MRNA 3'-END-processing 99.8 5.9E-20 2E-24 136.0 10.7 82 132-218 2-83 (96)
40 2cpe_A RNA-binding protein EWS 99.8 9.8E-20 3.4E-24 138.4 12.0 85 131-220 14-106 (113)
41 2div_A TRNA selenocysteine ass 99.8 6.2E-20 2.1E-24 136.2 10.5 83 131-218 8-95 (99)
42 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.6E-24 137.8 11.7 84 130-218 24-107 (108)
43 1p27_B RNA-binding protein 8A; 99.8 1.1E-19 3.6E-24 136.6 10.8 82 131-217 22-103 (106)
44 3ulh_A THO complex subunit 4; 99.8 1.4E-19 4.7E-24 136.2 11.4 80 131-216 28-107 (107)
45 1x4d_A Matrin 3; structural ge 99.8 8.6E-20 2.9E-24 138.7 10.2 78 130-218 13-93 (102)
46 2kxn_B Transformer-2 protein h 99.8 9.1E-20 3.1E-24 143.2 10.6 84 130-218 44-127 (129)
47 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.6E-24 136.5 10.4 84 131-220 15-98 (105)
48 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-19 6.1E-24 141.7 11.8 86 130-220 40-125 (139)
49 2cpi_A CCR4-NOT transcription 99.8 2E-19 7E-24 137.0 11.5 85 132-218 15-102 (111)
50 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4E-24 137.4 9.8 83 131-218 25-107 (110)
51 2dhg_A TRNA selenocysteine ass 99.8 1.5E-19 5.1E-24 135.3 10.2 84 131-220 8-93 (104)
52 1x4c_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 134.7 12.6 80 131-220 14-96 (108)
53 2cqp_A RNA-binding protein 12; 99.8 1.2E-19 4.1E-24 134.4 9.3 83 131-218 14-96 (98)
54 1x4e_A RNA binding motif, sing 99.8 3.5E-20 1.2E-24 133.9 6.1 81 131-216 4-84 (85)
55 3r27_A HnRNP L, heterogeneous 99.8 1.8E-19 6.2E-24 136.6 10.3 76 131-217 20-97 (100)
56 1sjq_A Polypyrimidine tract-bi 99.8 9.2E-20 3.2E-24 139.4 8.7 79 131-220 15-95 (105)
57 3p5t_L Cleavage and polyadenyl 99.8 4.2E-20 1.4E-24 135.5 6.5 81 133-218 2-84 (90)
58 2cq1_A PTB-like protein L; RRM 99.8 7.1E-19 2.4E-23 133.1 13.4 77 131-218 14-92 (101)
59 4a8x_A RNA-binding protein wit 99.8 1.9E-19 6.4E-24 130.3 9.6 83 132-218 4-86 (88)
60 3ns6_A Eukaryotic translation 99.8 6.3E-20 2.1E-24 137.5 7.2 81 132-217 6-93 (100)
61 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.1E-19 1.4E-23 142.5 12.5 84 130-218 37-120 (156)
62 2cqd_A RNA-binding region cont 99.8 5.6E-19 1.9E-23 135.0 12.5 82 131-218 16-97 (116)
63 2a3j_A U1 small nuclear ribonu 99.8 8.3E-20 2.9E-24 143.7 8.1 81 131-219 28-112 (127)
64 2fy1_A RNA-binding motif prote 99.8 5E-19 1.7E-23 136.3 12.1 83 130-218 5-87 (116)
65 3ex7_B RNA-binding protein 8A; 99.8 2.2E-19 7.5E-24 139.0 10.2 83 131-218 21-103 (126)
66 3lqv_A PRE-mRNA branch site pr 99.8 3.1E-19 1.1E-23 136.0 10.6 82 128-217 4-85 (115)
67 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.3E-23 131.5 14.8 84 131-218 24-113 (114)
68 2err_A Ataxin-2-binding protei 99.8 2.6E-19 8.8E-24 136.2 9.8 80 131-217 28-107 (109)
69 1p1t_A Cleavage stimulation fa 99.8 9.7E-20 3.3E-24 136.1 7.2 83 131-218 7-89 (104)
70 2dgw_A Probable RNA-binding pr 99.8 8.1E-19 2.8E-23 128.4 11.9 80 131-218 9-88 (91)
71 2lea_A Serine/arginine-rich sp 99.8 1.1E-19 3.7E-24 143.7 7.3 87 131-222 46-132 (135)
72 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.9E-23 132.6 12.5 77 131-218 14-92 (104)
73 3s7r_A Heterogeneous nuclear r 99.8 8.2E-19 2.8E-23 127.2 11.2 78 131-214 10-87 (87)
74 2dgx_A KIAA0430 protein; RRM d 99.8 5E-19 1.7E-23 131.4 10.1 81 131-219 8-92 (96)
75 3ucg_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 128.8 9.6 80 132-217 6-85 (89)
76 2cqg_A TDP-43, TAR DNA-binding 99.8 1.7E-18 5.9E-23 129.4 13.0 82 131-219 14-95 (103)
77 2kn4_A Immunoglobulin G-bindin 99.8 5.5E-19 1.9E-23 141.6 11.0 85 131-220 69-153 (158)
78 1why_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 128.9 12.2 78 131-219 16-95 (97)
79 2ek1_A RNA-binding protein 12; 99.8 1.6E-19 5.6E-24 132.8 7.2 80 132-216 15-94 (95)
80 2dgt_A RNA-binding protein 30; 99.8 1.2E-18 3.9E-23 128.0 11.7 77 131-220 9-85 (92)
81 2dnq_A RNA-binding protein 4B; 99.8 1.1E-18 3.9E-23 127.5 11.6 77 131-220 7-83 (90)
82 2m2b_A RNA-binding protein 10; 99.8 2E-19 6.7E-24 140.9 7.6 82 131-218 22-109 (131)
83 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-18 3.4E-23 131.9 11.3 82 131-220 14-95 (102)
84 2dnp_A RNA-binding protein 14; 99.8 6.8E-19 2.3E-23 128.7 9.8 80 131-223 8-87 (90)
85 2fc8_A NCL protein; structure 99.8 1.7E-18 5.8E-23 129.1 12.2 83 130-220 13-95 (102)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1E-18 3.5E-23 136.8 11.4 79 131-214 62-140 (140)
87 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-18 3.8E-23 136.1 11.4 79 131-220 30-110 (119)
88 3n9u_C Cleavage and polyadenyl 99.8 5.7E-19 1.9E-23 143.2 10.1 81 131-216 54-136 (156)
89 2cq4_A RNA binding motif prote 99.8 5.1E-19 1.7E-23 134.8 9.3 82 131-218 24-105 (114)
90 1nu4_A U1A RNA binding domain; 99.8 2.8E-19 9.6E-24 132.0 7.5 81 131-219 7-91 (97)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.7E-19 2.6E-23 142.6 10.8 84 131-219 71-154 (165)
92 2kt5_A RNA and export factor-b 99.8 6.8E-18 2.3E-22 130.5 15.3 84 130-219 33-116 (124)
93 2jwn_A Embryonic polyadenylate 99.8 8.8E-19 3E-23 135.2 10.0 84 131-220 35-118 (124)
94 2cpj_A Non-POU domain-containi 99.8 2.5E-18 8.4E-23 127.9 12.0 77 131-218 14-90 (99)
95 2db1_A Heterogeneous nuclear r 99.8 8.4E-19 2.9E-23 135.4 9.8 80 130-216 15-97 (118)
96 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-18 4.4E-23 125.5 9.8 74 131-215 11-85 (85)
97 1x4f_A Matrin 3; structural ge 99.8 2.2E-18 7.5E-23 133.1 11.7 79 131-220 24-105 (112)
98 1wel_A RNA-binding protein 12; 99.8 8.2E-19 2.8E-23 136.0 9.3 82 129-216 22-103 (124)
99 2dgu_A Heterogeneous nuclear r 99.8 1.9E-18 6.6E-23 129.5 10.7 76 131-219 10-85 (103)
100 2cpd_A Apobec-1 stimulating pr 99.8 5.4E-18 1.8E-22 126.0 13.0 77 131-220 14-92 (99)
101 2nlw_A Eukaryotic translation 99.8 1E-18 3.6E-23 131.8 9.2 82 131-218 14-101 (105)
102 2fc9_A NCL protein; structure 99.8 4.1E-18 1.4E-22 126.9 12.1 80 131-219 14-93 (101)
103 1wf1_A RNA-binding protein RAL 99.8 4.3E-18 1.5E-22 129.0 12.2 76 131-219 26-102 (110)
104 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-18 5.3E-23 131.9 9.8 83 130-218 23-105 (109)
105 2mss_A Protein (musashi1); RNA 99.8 5.2E-19 1.8E-23 124.8 6.5 75 134-214 1-75 (75)
106 1x4b_A Heterogeneous nuclear r 99.8 1.8E-18 6E-23 132.2 10.0 84 131-220 26-109 (116)
107 2cpx_A Hypothetical protein FL 99.8 1.8E-18 6.2E-23 131.6 9.8 82 130-220 23-108 (115)
108 1x4g_A Nucleolysin TIAR; struc 99.8 2.7E-18 9.3E-23 129.9 10.4 79 131-220 24-102 (109)
109 2e5i_A Heterogeneous nuclear r 99.8 7.2E-18 2.5E-22 132.4 13.0 82 133-223 26-108 (124)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9E-19 3.1E-23 130.9 7.4 82 130-217 17-98 (100)
111 2dis_A Unnamed protein product 99.8 1.4E-18 4.6E-23 131.1 8.4 84 131-219 7-94 (109)
112 2e5j_A Methenyltetrahydrofolat 99.8 4.5E-18 1.6E-22 126.1 11.1 78 131-218 18-95 (97)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.1E-19 2.4E-23 124.4 6.2 76 133-214 1-76 (77)
114 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 6E-23 131.1 8.5 78 132-216 11-88 (103)
115 2xnq_A Nuclear polyadenylated 99.8 4.9E-18 1.7E-22 126.6 10.6 76 130-218 20-96 (97)
116 2la4_A Nuclear and cytoplasmic 99.8 1.9E-18 6.3E-23 128.8 8.1 75 131-216 26-100 (101)
117 1sjr_A Polypyrimidine tract-bi 99.8 3.6E-18 1.2E-22 140.2 10.5 82 131-219 45-126 (164)
118 2cqh_A IGF-II mRNA-binding pro 99.8 2.7E-18 9.4E-23 126.0 8.8 81 131-223 7-89 (93)
119 1fjc_A Nucleolin RBD2, protein 99.8 2.1E-18 7.2E-23 127.2 8.2 78 131-218 15-92 (96)
120 2ki2_A SS-DNA binding protein 99.8 3.9E-19 1.3E-23 129.7 3.9 80 133-218 2-81 (90)
121 3zzy_A Polypyrimidine tract-bi 99.7 8.2E-18 2.8E-22 133.2 11.4 84 132-223 28-112 (130)
122 2jvo_A Nucleolar protein 3; nu 99.7 6.5E-18 2.2E-22 128.5 10.3 77 131-220 30-106 (108)
123 3q2s_C Cleavage and polyadenyl 99.7 2.4E-18 8.1E-23 147.6 8.8 81 131-216 67-149 (229)
124 2hgl_A HNRPF protein, heteroge 99.7 2.9E-18 1E-22 136.4 8.7 79 131-216 43-124 (136)
125 1wg5_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 125.4 11.9 80 131-217 14-94 (104)
126 1fj7_A Nucleolin RBD1, protein 99.7 5.9E-19 2E-23 131.5 4.3 82 131-219 16-97 (101)
127 2wbr_A GW182, gawky, LD47780P; 99.7 3.4E-18 1.2E-22 126.7 8.1 73 132-215 7-79 (89)
128 2kvi_A Nuclear polyadenylated 99.7 6.1E-18 2.1E-22 125.3 9.5 76 131-219 9-85 (96)
129 1whx_A Hypothetical protein ri 99.7 5.5E-18 1.9E-22 129.4 9.4 76 132-218 10-85 (111)
130 4f02_A Polyadenylate-binding p 99.7 7.6E-18 2.6E-22 141.5 11.2 83 130-217 13-95 (213)
131 3egn_A RNA-binding protein 40; 99.7 3.5E-18 1.2E-22 135.2 8.5 81 131-219 44-132 (143)
132 2cpy_A RNA-binding protein 12; 99.7 5.2E-18 1.8E-22 129.8 9.1 80 130-216 13-93 (114)
133 2hvz_A Splicing factor, argini 99.7 4.2E-18 1.4E-22 126.8 8.4 77 133-219 1-77 (101)
134 2krb_A Eukaryotic translation 99.7 1.6E-18 5.3E-23 124.5 5.7 74 132-211 1-80 (81)
135 1x5p_A Negative elongation fac 99.7 3.9E-17 1.3E-21 121.0 13.2 77 131-220 14-90 (97)
136 2jvr_A Nucleolar protein 3; RN 99.7 4.2E-18 1.5E-22 131.0 7.4 79 131-218 27-106 (111)
137 3md3_A Nuclear and cytoplasmic 99.7 3.9E-17 1.3E-21 129.3 12.6 81 131-216 86-166 (166)
138 1fxl_A Paraneoplastic encephal 99.7 3.1E-17 1.1E-21 130.1 11.6 82 132-218 2-83 (167)
139 2e44_A Insulin-like growth fac 99.7 3.1E-17 1.1E-21 120.9 10.1 78 131-217 14-92 (96)
140 2i2y_A Fusion protein consists 99.7 2.3E-17 8E-22 131.4 10.1 78 131-218 72-149 (150)
141 2lcw_A RNA-binding protein FUS 99.6 4.5E-19 1.6E-23 135.6 0.0 83 131-218 6-96 (116)
142 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-17 9.8E-22 130.8 10.5 83 131-218 2-84 (168)
143 2dnn_A RNA-binding protein 12; 99.7 2.6E-17 9.1E-22 126.0 9.6 78 131-216 15-92 (109)
144 1iqt_A AUF1, heterogeneous nuc 99.7 3.2E-18 1.1E-22 120.6 4.0 75 134-214 1-75 (75)
145 2cq2_A Hypothetical protein LO 99.7 2.4E-17 8.2E-22 127.7 9.2 80 131-219 24-108 (114)
146 3beg_B Splicing factor, argini 99.7 1.8E-17 6.1E-22 127.2 8.4 76 131-218 15-95 (115)
147 2f3j_A RNA and export factor b 99.7 2.6E-17 8.8E-22 136.0 9.9 83 130-218 86-168 (177)
148 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-17 3.7E-22 126.6 6.8 80 130-216 9-91 (107)
149 2qfj_A FBP-interacting repress 99.7 8.8E-17 3E-21 133.2 12.7 83 131-218 124-206 (216)
150 2xs2_A Deleted in azoospermia- 99.7 9.3E-18 3.2E-22 125.2 5.9 80 131-218 8-87 (102)
151 4f02_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 137.1 10.2 80 131-217 102-181 (213)
152 2yh0_A Splicing factor U2AF 65 99.7 7.4E-17 2.5E-21 131.9 11.2 85 130-219 112-196 (198)
153 2g4b_A Splicing factor U2AF 65 99.7 7.9E-17 2.7E-21 128.9 11.0 79 131-214 93-171 (172)
154 3pgw_S U1-70K; protein-RNA com 99.7 5.4E-17 1.9E-21 151.3 11.5 83 131-218 101-183 (437)
155 2dha_A FLJ20171 protein; RRM d 99.7 5.1E-18 1.8E-22 132.8 3.7 79 130-215 21-103 (123)
156 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-16 5.3E-21 126.5 12.4 81 131-214 88-168 (168)
157 1wg1_A KIAA1579 protein, homol 99.7 5.9E-17 2E-21 118.1 8.8 75 132-218 5-79 (88)
158 3d2w_A TAR DNA-binding protein 99.7 9E-17 3.1E-21 118.1 9.5 76 131-218 10-85 (89)
159 3md3_A Nuclear and cytoplasmic 99.7 8.8E-17 3E-21 127.3 10.2 80 133-218 1-80 (166)
160 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.6E-22 133.7 4.8 81 130-218 44-124 (139)
161 3nmr_A Cugbp ELAV-like family 99.7 9.1E-17 3.1E-21 128.5 10.2 81 131-215 94-175 (175)
162 1l3k_A Heterogeneous nuclear r 99.7 8.3E-17 2.9E-21 131.4 9.8 83 130-218 11-93 (196)
163 1fxl_A Paraneoplastic encephal 99.7 1.5E-16 5.3E-21 126.0 10.9 81 131-214 87-167 (167)
164 2e5g_A U6 snRNA-specific termi 99.7 1.1E-16 3.6E-21 118.0 9.2 78 132-220 8-85 (94)
165 2dnl_A Cytoplasmic polyadenyla 99.7 5.5E-17 1.9E-21 124.0 7.9 66 132-198 8-73 (114)
166 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5E-21 119.3 9.8 77 132-223 8-90 (96)
167 3tyt_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 133.9 10.5 76 132-217 4-80 (205)
168 2hgm_A HNRPF protein, heteroge 99.7 1.1E-16 3.8E-21 125.8 8.4 77 131-215 41-119 (126)
169 3pgw_A U1-A; protein-RNA compl 99.7 3.5E-16 1.2E-20 135.5 11.9 80 131-218 8-91 (282)
170 3nmr_A Cugbp ELAV-like family 99.7 2.5E-16 8.6E-21 125.9 10.2 87 131-218 2-89 (175)
171 1l3k_A Heterogeneous nuclear r 99.7 3E-16 1E-20 128.1 10.6 82 131-218 103-184 (196)
172 2cjk_A Nuclear polyadenylated 99.7 1.2E-16 4E-21 127.3 7.6 81 131-217 86-166 (167)
173 2bz2_A Negative elongation fac 99.7 3.6E-16 1.2E-20 121.4 10.1 76 130-218 37-112 (121)
174 2qfj_A FBP-interacting repress 99.7 3.4E-16 1.2E-20 129.6 10.1 82 131-217 27-108 (216)
175 2hzc_A Splicing factor U2AF 65 99.6 2.2E-16 7.5E-21 113.9 6.9 71 131-213 5-86 (87)
176 2adc_A Polypyrimidine tract-bi 99.6 6.9E-16 2.4E-20 130.8 10.3 77 131-217 33-110 (229)
177 1wf0_A TDP-43, TAR DNA-binding 99.6 7.3E-16 2.5E-20 112.0 8.7 78 131-220 4-81 (88)
178 3tyt_A Heterogeneous nuclear r 99.6 4.8E-16 1.7E-20 130.8 8.2 79 131-214 122-204 (205)
179 3pgw_A U1-A; protein-RNA compl 99.6 7.8E-15 2.7E-19 127.0 16.1 76 131-216 206-282 (282)
180 2pe8_A Splicing factor 45; RRM 99.6 2E-15 6.8E-20 114.8 10.7 82 131-216 7-93 (105)
181 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-15 4.8E-20 127.0 10.0 79 132-217 109-187 (193)
182 3u1l_A PRE-mRNA-splicing facto 99.6 7.7E-16 2.6E-20 133.3 8.6 77 131-218 133-230 (240)
183 2j8a_A Histone-lysine N-methyl 99.6 6.8E-16 2.3E-20 122.0 7.4 79 133-216 3-95 (136)
184 2cjk_A Nuclear polyadenylated 99.6 8.1E-16 2.8E-20 122.4 7.7 78 132-216 3-80 (167)
185 2dit_A HIV TAT specific factor 99.6 5.5E-15 1.9E-19 112.6 11.7 80 131-219 14-104 (112)
186 3smz_A Protein raver-1, ribonu 99.6 3.2E-15 1.1E-19 129.6 10.5 82 131-218 183-265 (284)
187 1fje_B Nucleolin RBD12, protei 99.6 3.8E-15 1.3E-19 119.8 10.1 77 131-217 98-174 (175)
188 1qm9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 122.7 8.9 76 132-217 3-79 (198)
189 3sde_A Paraspeckle component 1 99.6 9.2E-15 3.1E-19 126.3 10.4 76 131-217 21-96 (261)
190 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.9E-19 123.3 10.4 77 131-217 150-228 (229)
191 1qm9_A Polypyrimidine tract-bi 99.6 6.4E-15 2.2E-19 121.1 8.6 77 131-217 119-197 (198)
192 3smz_A Protein raver-1, ribonu 99.6 1.5E-14 5E-19 125.4 10.8 82 132-218 95-176 (284)
193 2ghp_A U4/U6 snRNA-associated 99.5 8E-15 2.7E-19 127.6 8.3 82 131-217 209-291 (292)
194 1fje_B Nucleolin RBD12, protei 99.5 2.7E-15 9.4E-20 120.6 4.1 82 130-218 11-92 (175)
195 3sde_A Paraspeckle component 1 99.5 2.1E-14 7.2E-19 124.0 9.9 83 132-218 96-180 (261)
196 3v4m_A Splicing factor U2AF 65 99.5 3E-14 1E-18 108.1 8.6 82 132-216 5-96 (105)
197 3tht_A Alkylated DNA repair pr 99.5 4.7E-14 1.6E-18 128.0 9.5 78 130-216 16-98 (345)
198 2g4b_A Splicing factor U2AF 65 99.5 4.6E-14 1.6E-18 112.7 8.1 75 132-218 4-89 (172)
199 1jmt_A Splicing factor U2AF 35 99.5 9.5E-15 3.2E-19 110.6 3.8 73 136-214 19-103 (104)
200 2yh0_A Splicing factor U2AF 65 99.5 7.1E-14 2.4E-18 114.0 9.3 74 132-217 4-88 (198)
201 2ghp_A U4/U6 snRNA-associated 99.5 5E-14 1.7E-18 122.5 8.6 82 132-219 117-199 (292)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5.2E-18 106.6 9.9 84 131-216 19-108 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.8E-13 9.5E-18 102.2 10.7 75 132-218 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.6E-16 94.6 10.0 77 130-215 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 1E-10 3.4E-15 91.3 9.9 72 132-214 18-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.6E-15 86.1 6.8 72 132-217 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 1.8E-09 6E-14 90.7 8.8 70 144-215 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 2.2E-09 7.4E-14 80.1 4.7 69 132-214 15-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.2E-06 4.3E-11 66.8 7.8 74 130-214 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.1 1E-05 3.6E-10 61.0 7.5 75 133-218 6-85 (104)
211 1whv_A Poly(A)-specific ribonu 98.1 2.7E-05 9.2E-10 58.2 9.2 56 131-198 15-70 (100)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00036 1.2E-08 51.4 10.0 81 133-215 2-86 (91)
213 3ctr_A Poly(A)-specific ribonu 97.3 0.00031 1.1E-08 52.5 5.6 54 133-198 7-60 (101)
214 2dhx_A Poly (ADP-ribose) polym 97.1 0.0021 7.1E-08 48.4 7.6 67 132-212 8-79 (104)
215 2l08_A Regulator of nonsense t 96.9 0.0031 1.1E-07 46.9 7.0 82 132-215 9-94 (97)
216 1wwh_A Nucleoporin 35, nucleop 96.4 0.01 3.6E-07 45.6 7.5 71 132-214 24-94 (119)
217 2kn4_A Immunoglobulin G-bindin 96.2 0.0048 1.6E-07 48.2 4.5 35 161-200 2-36 (158)
218 3pq1_A Poly(A) RNA polymerase; 95.8 0.0036 1.2E-07 58.6 2.5 55 132-195 53-107 (464)
219 2i2y_A Fusion protein consists 94.9 0.011 3.6E-07 46.0 2.2 39 175-216 11-50 (150)
220 3d45_A Poly(A)-specific ribonu 94.3 0.11 3.7E-06 49.0 7.9 55 132-198 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 89.5 0.44 1.5E-05 37.1 4.7 80 132-215 7-97 (132)
222 2g0c_A ATP-dependent RNA helic 73.5 6.7 0.00023 26.5 5.2 68 134-215 2-75 (76)
223 4f25_A Polyadenylate-binding p 70.5 0.88 3E-05 33.3 0.0 99 33-148 12-113 (115)
224 4e8u_A Putative uncharacterize 45.2 30 0.001 27.8 4.9 57 133-195 13-81 (172)
225 3pgw_S U1-70K; protein-RNA com 31.8 6.4 0.00022 35.9 -1.2 15 149-163 9-23 (437)
226 2e5p_A Protein PHF1, PHD finge 31.0 18 0.00062 24.6 1.2 8 179-186 39-46 (68)
227 2e7g_A Putative ribosome-bindi 27.2 1.3E+02 0.0043 22.5 5.7 36 156-198 43-79 (129)
228 2m0o_A PHD finger protein 1; t 23.5 29 0.001 24.2 1.2 9 179-187 56-64 (79)
229 3fry_A Probable copper-exporti 23.3 1.5E+02 0.005 18.7 4.8 59 133-202 7-65 (73)
230 2e5q_A PHD finger protein 19; 20.0 15 0.00053 24.6 -0.8 8 179-186 37-44 (63)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=149.67 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ +|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr--~l~V 93 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV---AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK--TIKV 93 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC---CCcccccEEEEECCHHHHHHHHHHhCCCEECCE--EEEE
Confidence 68999999999999999999999999999999999862 367888999999999999999999999999976 9999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
+||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99975
No 2
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.8e-20 Score=143.15 Aligned_cols=85 Identities=15% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 98 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ---TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK--RLK 98 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS---SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---CCCcCccEEEEECCHHHHHHHHHHcCCCEECCE--EEE
Confidence 478999999999999999999999999999999999862 267888999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876543
No 3
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=138.56 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 89 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD---TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR--VIK 89 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS---SCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE--EEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc--EEE
Confidence 479999999999999999999999999999999998862 245666999999999999999999999999976 999
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|+||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99986
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=137.56 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD---TGRSKGYGFITFSDSECARRALEQLNGFELAGR--PMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS---SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS--CCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC---CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc--EEE
Confidence 479999999999999999999999999999999998862 255667999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 9999876543
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=7.1e-21 Score=146.15 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++||+.|||..|.++ .|+|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~--~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECCE--EEEE
Confidence 6899999999999999999999999999999999986 34677999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+|++...
T Consensus 78 ~~a~~~~ 84 (115)
T 4f25_A 78 GRFKSRK 84 (115)
T ss_dssp EESSCCC
T ss_pred EECCCcc
Confidence 9997654
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=144.38 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|++.++|++|++.|||..|.++ .|+|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr--~i~V 80 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR---TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN--IIHA 80 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC---CCceeeEEEEEECCHHHHHHHHHHhCCCEECCe--EEEE
Confidence 69999999999999999999999999999999999872 367888999999999999999999999999987 9999
Q ss_pred EeecCC
Q 026915 212 DVTGNL 217 (231)
Q Consensus 212 ~~ak~~ 217 (231)
++++..
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 999654
No 7
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=139.18 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ . |+++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 85 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK--PL 85 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS--BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc--EE
Confidence 35799999999999999999999999999999999987 2 66778999999999999999999999999877 99
Q ss_pred EEEeecCCCCCCC
Q 026915 210 RIDVTGNLTGHVR 222 (231)
Q Consensus 210 ~V~~ak~~~~~~~ 222 (231)
+|+|++.......
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 86 YVALAQRKEERQS 98 (103)
T ss_dssp EEEECSSCCCCCC
T ss_pred EEEEecccccCCC
Confidence 9999988665433
No 8
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.4e-20 Score=139.08 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-cccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-SVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~~~L 209 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..+.+. .+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 479999999999999999999999999999999999863 67788999999999999999999999998861 1389
Q ss_pred EEEeecCCCCC
Q 026915 210 RIDVTGNLTGH 220 (231)
Q Consensus 210 ~V~~ak~~~~~ 220 (231)
+|+|++....+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999886644
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=139.29 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 88 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT---TGQSKGFAFISFHRREDAARAIAGVSGFGYDHL--ILN 88 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC---CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc--EEE
Confidence 479999999999999999999999999999999998862 267788999999999999999999999999976 999
Q ss_pred EEeecCCCCCC
Q 026915 211 IDVTGNLTGHV 221 (231)
Q Consensus 211 V~~ak~~~~~~ 221 (231)
|+|++......
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99998876443
No 10
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=140.19 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++|+++|+++|++||.|.+|+|..+. +++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 92 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR------GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY--RLR 92 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS------SSSCCEEEEESCHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------CCCcEEEEEECCHHHHHHHHHHcCCCEECCe--EEE
Confidence 47999999999999999999999999999999996653 3455999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 9999876543
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=140.19 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 86 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH---TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR--ELR 86 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS---SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB--CCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc--EEE
Confidence 479999999999999999999999999999999998862 256677999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=139.50 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l 87 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV---TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK--PI 87 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC--BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe--EE
Confidence 3479999999999999999999999999999999998862 256777999999999999999999999999977 99
Q ss_pred EEEeecCCCCC
Q 026915 210 RIDVTGNLTGH 220 (231)
Q Consensus 210 ~V~~ak~~~~~ 220 (231)
+|+|++.....
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876544
No 13
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=136.92 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 89 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKEN--IIK 89 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSSC--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 479999999999999999999999999999999999862 67788999999999999999999999999977 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987643
No 14
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=138.51 Aligned_cols=84 Identities=24% Similarity=0.342 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 127 ~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~--------v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
.++.+.++|||+|||+++++++|+++|++||.|.+ |+++.++. .|+++|||||+|.+.++|++|++.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---TGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT---TCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC---CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34446899999999999999999999999999999 99999862 36788899999999999999999999
Q ss_pred CceecCCcccEEEEeec
Q 026915 199 VKSCCAKSVPIRIDVTG 215 (231)
Q Consensus 199 G~~l~g~~~~L~V~~ak 215 (231)
|..+.++ .|+|+||+
T Consensus 85 g~~~~g~--~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGN--PIKVSFAT 99 (99)
T ss_dssp TCBSSSS--BCEEEECC
T ss_pred CCEeCCc--EEEEEecC
Confidence 9999977 99999985
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=143.77 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce----ecCC
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS----CCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~--i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~----l~g~ 205 (231)
-+||||+|||+++|+++|+++|++||. +.+|+|+.++. .|+++|||||+|.+.++|++|++.|||.. |+++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~---tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ---TQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS---SSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC---CCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 589999999999999999999999995 67899999872 26677799999999999999999999974 7766
Q ss_pred cccEEEEeecC
Q 026915 206 SVPIRIDVTGN 216 (231)
Q Consensus 206 ~~~L~V~~ak~ 216 (231)
+|+|+||++
T Consensus 86 --~i~V~~Aks 94 (95)
T 2lkz_A 86 --TIGVDFAKS 94 (95)
T ss_dssp --EEEEEECCC
T ss_pred --EEEEEEccC
Confidence 999999986
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=136.73 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 88 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---SRRSRGFAFVYFENVDDAKEAKERANGMELDGR--RIR 88 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS---SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 479999999999999999999999999999999998862 266788999999999999999999999999976 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|+||+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999975
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.8e-20 Score=141.76 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 113 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ---TSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK--RLK 113 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS---SSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE--ECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE--EEE
Confidence 479999999999999999999999999999999998862 255667999999999999999999999999976 999
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|+|+|
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=143.36 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc-CceecCCcccE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ-VKSCCAKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~-G~~l~g~~~~L 209 (231)
+++|||+|||+++||++|+++|++|| .|.+|+|+.++. .|+++|||||+|.+.++|++||+.|+ +..+.++ +|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~---t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr--~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS---SGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ--KV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS---SCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE--EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC---CCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE--EE
Confidence 58999999999999999999999999 899999998872 25667799999999999999999875 4568876 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+||++..
T Consensus 76 ~V~~a~~~~ 84 (91)
T 2lxi_A 76 SMHYSDPKP 84 (91)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999998754
No 19
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=137.08 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 86 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVEGR--KIE 86 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----TCCEEEEEESCHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----CcEEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 4799999999999999999999999999999999988632 455999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999876544
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=135.38 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA---TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR--QIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCe--EEE
Confidence 478999999999999999999999999999999999862 267888999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+||+..
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999763
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=137.83 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.. ++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 86 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----NDPYCFVEFYEHRDAAAALAAMNGRKILGK--EVK 86 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-----SCCEEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-----CCCEEEEEECCHHHHHHHHHHhCCCCcCCC--eEE
Confidence 4799999999999999999999999999999999998632 345999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999886543
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.4e-20 Score=139.06 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc------Cceec
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ------VKSCC 203 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~------G~~l~ 203 (231)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|| |..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD---TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3479999999999999999999999999999999998862 25566799999999999999999999 99999
Q ss_pred CCcccEEEEeecCCCCC
Q 026915 204 AKSVPIRIDVTGNLTGH 220 (231)
Q Consensus 204 g~~~~L~V~~ak~~~~~ 220 (231)
++ .|+|+|++.....
T Consensus 90 g~--~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GR--QLKVDLAVTRDEA 104 (111)
T ss_dssp SC--EEEEECCCCCCCC
T ss_pred CE--EEEEEECCCCccC
Confidence 77 9999999876544
No 23
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.1e-20 Score=140.38 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee-cCCccc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC-CAKSVP 208 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l-~g~~~~ 208 (231)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+ .+.++.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF---TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS---SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3479999999999999999999999999999999998862 256667999999999999999999999986 222349
Q ss_pred EEEEeecCCCCC
Q 026915 209 IRIDVTGNLTGH 220 (231)
Q Consensus 209 L~V~~ak~~~~~ 220 (231)
|+|+|++.....
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876644
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=136.10 Aligned_cols=84 Identities=19% Similarity=0.388 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++ |+|..|.++ .|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~--~l~ 82 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE---KQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK--KVE 82 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT---TCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC--BCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCCCceEEEEECCHHHHHHHHH-hCCCEECCe--EEE
Confidence 479999999999999999999999999999999998862 25566799999999999999998 999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876544
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-20 Score=138.17 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeC-CCCCCCCCcceEEEEEeCCHHHHHHHHHHh-cCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~-k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-~G~~l~g~~~~ 208 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.+ +. .|+++|||||+|.+.++|++|++.| ||..|.++ .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--~ 88 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG---TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--R 88 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS---SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC--B
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC---CCCcCceEEEEECCHHHHHHHHHHhccCCeECCC--E
Confidence 4799999999999999999999999999999999988 31 2556679999999999999999999 99999977 9
Q ss_pred EEEEeecCCCCCC
Q 026915 209 IRIDVTGNLTGHV 221 (231)
Q Consensus 209 L~V~~ak~~~~~~ 221 (231)
|+|+|++......
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998866443
No 26
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=137.99 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 88 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR--PIN 88 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCC--EEE
Confidence 479999999999999999999999999999999999863 67788999999999999999999999999976 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|+|+++
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999875
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=138.27 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v-~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++++|||+|||+++++++|+++|++||.|.+| +|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD---TGNSKGYAFINFASFDASDAAIEAMNGQYLCNR--PI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT---TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE--EC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE--EE
Confidence 37999999999999999999999999999999 9998852 255667999999999999999999999999976 99
Q ss_pred EEEeecCCCCCCCC
Q 026915 210 RIDVTGNLTGHVRR 223 (231)
Q Consensus 210 ~V~~ak~~~~~~~r 223 (231)
+|+|++....+..+
T Consensus 79 ~v~~a~~~~~~~~~ 92 (96)
T 1x5t_A 79 TVSYAFKKDSKGSG 92 (96)
T ss_dssp EEEESCCCCCCCCC
T ss_pred EEEEecccCCCCCC
Confidence 99999887655443
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=138.12 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 87 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR--PMH 87 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC--EEE
Confidence 479999999999999999999999999999999999863 67788999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999976543
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=4.6e-20 Score=132.36 Aligned_cols=82 Identities=26% Similarity=0.397 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+.+|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~v 75 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR--PLRI 75 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---CCCccceEEEEECCHHHHHHHHHHhcCCeeCCc--EEEE
Confidence 36899999999999999999999999999999998862 267888999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+|++...
T Consensus 76 ~~a~~~~ 82 (83)
T 3md1_A 76 NWAAKLE 82 (83)
T ss_dssp EECCCCC
T ss_pred EecCcCC
Confidence 9998753
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=138.52 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 85 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR--TIR 85 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS---SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 479999999999999999999999999999999998862 245667999999999999999999999999976 999
Q ss_pred EEeecCCCCCCC
Q 026915 211 IDVTGNLTGHVR 222 (231)
Q Consensus 211 V~~ak~~~~~~~ 222 (231)
|+|++....+..
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 2cqb_A 86 VNLAKPMRIKES 97 (102)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999988765443
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=7e-20 Score=137.22 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 127 ~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
.++.+.++|||+|||+++++++|+++|++|| |.+|+|+.++. .|+++|||||+|.+.++|++|| .|||..|.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~- 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD---TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR- 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE-
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC---CCccceEEEEEECCHHHHHHHH-hhCCCeECCe-
Confidence 3344579999999999999999999999996 99999999862 3678889999999999999999 8999999976
Q ss_pred ccEEEEeecCCCCC
Q 026915 207 VPIRIDVTGNLTGH 220 (231)
Q Consensus 207 ~~L~V~~ak~~~~~ 220 (231)
.|+|+|++.....
T Consensus 84 -~l~V~~a~~~~~~ 96 (103)
T 2dng_A 84 -SLRVDIAEGRKQD 96 (103)
T ss_dssp -ECEEEECCCCCCC
T ss_pred -EEEEEEecCCCCC
Confidence 9999999876543
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=138.06 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 85 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE---TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR--QIR 85 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS---SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC--CCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCCcccEEEEEECCHHHHHHHHHHhCCCEECCe--EEE
Confidence 379999999999999999999999999999999998862 255667999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.7e-20 Score=134.18 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 80 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR--TIR 80 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC---CCccccEEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 479999999999999999999999999999999988852 256677999999999999999999999999976 999
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|+||+
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99986
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=7.9e-20 Score=139.35 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 88 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA---TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR--QIR 88 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE--ECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 479999999999999999999999999999999999862 267788999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999986543
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=136.24 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT---TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 379999999999999999999999999999999998862 255667999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999886543
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=137.70 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 127 ~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
.+..+.++|||+|||+++++++|+++|++|| |.+|+|+.++.. .|+++|||||+|.+.++|++|| .|||..|.++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~- 84 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK- 84 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE-
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc-
Confidence 3344579999999999999999999999999 999999988621 1566779999999999999999 9999999976
Q ss_pred ccEEEEeecCCCCC
Q 026915 207 VPIRIDVTGNLTGH 220 (231)
Q Consensus 207 ~~L~V~~ak~~~~~ 220 (231)
.|+|+|++.....
T Consensus 85 -~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 85 -RIRVDVADQAQDK 97 (104)
T ss_dssp -ECEEEECCCCCCC
T ss_pred -EEEEEEccCCCCC
Confidence 9999999887644
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=6.1e-20 Score=134.36 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.+. |+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~ 79 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSGR--EID 79 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB--CCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 47999999999999999999999999999999999753 66778999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998764
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=136.70 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.....|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH--KLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe--EEE
Confidence 379999999999999999999999999999999998863111237888999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=5.9e-20 Score=135.95 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ---TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR--FLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---CCccceEEEEEECCHHHHHHHHHHhCCCeECCe--EEEE
Confidence 79999999999999999999999999999999998862 256677999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+||+...
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9998764
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=138.41 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~--------~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
++++|||+|||+++++++|+++|++||.|. .|+|+.++. .|+++|||||+|.+.++|++||+.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE---TGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT---TCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC---CCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 479999999999999999999999999998 699998852 256677999999999999999999999999
Q ss_pred cCCcccEEEEeecCCCCC
Q 026915 203 CAKSVPIRIDVTGNLTGH 220 (231)
Q Consensus 203 ~g~~~~L~V~~ak~~~~~ 220 (231)
.++ .|+|+|++.....
T Consensus 91 ~g~--~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGS--KLKVSLARKKPPM 106 (113)
T ss_dssp TTE--ECEEECSSCCCCS
T ss_pred CCC--EEEEEECCCCCCC
Confidence 976 9999999876544
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=136.22 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc-
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP- 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~-~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~- 208 (231)
++++|||+|||+++++++|+++|++||.|. +|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~~ 82 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL---TGIPAGYCFVEFADLATAEKCLHKINGKPLPGA--TP 82 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS---SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC--SS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC---CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC--Cc
Confidence 479999999999999999999999999999 999999862 267788999999999999999999999999987 6
Q ss_pred ---EEEEeecCCC
Q 026915 209 ---IRIDVTGNLT 218 (231)
Q Consensus 209 ---L~V~~ak~~~ 218 (231)
|+|+||+...
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999998754
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=137.79 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~--~l 98 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE---TGRSKGYGFITFSDSECAKKALEQLNGFELAGR--PM 98 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT---TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS--CC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCE--EE
Confidence 3579999999999999999999999999999999998862 367888999999999999999999999999987 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++...
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998653
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=136.57 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 96 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ--PIS 96 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS--BCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCceeeEEEEEECCHHHHHHHHHHhcCCEECCc--EEE
Confidence 478999999999999999999999999999999998862 267788999999999999999999999999977 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+||+..
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999764
No 44
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.4e-19 Score=136.17 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 101 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDGR--PMN 101 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEE
Confidence 479999999999999999999999999999999999863 67788999999999999999999999999976 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|+||.+
T Consensus 102 V~~a~s 107 (107)
T 3ulh_A 102 IQLVTS 107 (107)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999863
No 45
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=138.66 Aligned_cols=78 Identities=14% Similarity=0.314 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce--ecCCc
Q 026915 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS--CCAKS 206 (231)
Q Consensus 130 ~~~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~--l~g~~ 206 (231)
+++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.||+.. |.++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr- 82 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALVFGK- 82 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEETTE-
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceECCc-
Confidence 3589999999999 99999999999999999999998764 4 99999999999999999999754 7866
Q ss_pred ccEEEEeecCCC
Q 026915 207 VPIRIDVTGNLT 218 (231)
Q Consensus 207 ~~L~V~~ak~~~ 218 (231)
+|+|+||+...
T Consensus 83 -~l~V~~a~~~~ 93 (102)
T 1x4d_A 83 -PVRVHLSQKYK 93 (102)
T ss_dssp -ECEEEEECCCT
T ss_pred -EEEEEECCCCC
Confidence 99999998654
No 46
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=9.1e-20 Score=143.25 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~--~l 118 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---SRRSRGFAFVYFENVDDAKEAKERANGMELDGR--RI 118 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS---SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS--CC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCE--EE
Confidence 3579999999999999999999999999999999998862 255667999999999999999999999999977 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++...
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998753
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=136.52 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+. +|..|.++ .|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~--~l~ 88 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT---TNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR--NID 88 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---SCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE--EEB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCCcceEEEEEECCHHHHHHHHHh-CCCeECCE--EEE
Confidence 479999999999999999999999999999999999862 267788999999999999999998 99999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 48
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=141.73 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+..++|||+|||+++++++|+++|+.||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE---TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK--RL 114 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT---TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--EE
Confidence 4579999999999999999999999999999999999863 267788999999999999999999999999977 99
Q ss_pred EEEeecCCCCC
Q 026915 210 RIDVTGNLTGH 220 (231)
Q Consensus 210 ~V~~ak~~~~~ 220 (231)
+|+|++....+
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 49
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=137.01 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~---~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.....++++|||||+|.+.++|++||+.|||..|.++ +
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr--~ 92 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR--T 92 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE--E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE--E
Confidence 6899999999999999999 9999999999999998873222245678999999999999999999999999976 9
Q ss_pred EEEEeecCCC
Q 026915 209 IRIDVTGNLT 218 (231)
Q Consensus 209 L~V~~ak~~~ 218 (231)
|+|+||++..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 50
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.2e-19 Score=137.38 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|+..|||..|.++ .|+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 99 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ--TIQ 99 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT---TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCc--EEE
Confidence 478999999999999999999999999999999998862 256677999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99997653
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=135.29 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-ecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS-CCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~-fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~-l~g~~~~ 208 (231)
++++|||+|||+++|+++|+++|++ ||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||.. +.++ .
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--~ 81 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK--P 81 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS--C
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccCCE--e
Confidence 4799999999999999999999999 99999999999862 6678899999999999999999999999 9977 9
Q ss_pred EEEEeecCCCCC
Q 026915 209 IRIDVTGNLTGH 220 (231)
Q Consensus 209 L~V~~ak~~~~~ 220 (231)
|+|+|++.....
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999765533
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=134.65 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC---cc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK---SV 207 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~---~~ 207 (231)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ | ||||+|.+.++|++||+.|||..|.+. .+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 4799999999999999999999999999999999887 3 999999999999999999999999971 13
Q ss_pred cEEEEeecCCCCC
Q 026915 208 PIRIDVTGNLTGH 220 (231)
Q Consensus 208 ~L~V~~ak~~~~~ 220 (231)
.|+|+|++.....
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 8999999876544
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=134.41 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++++++|+++|++||.|.+++++.++ ..|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR--KVK 88 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC---SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC---CCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe--EEE
Confidence 36899999999999999999999999999888888775 2367888999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++.+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 54
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-20 Score=133.91 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT---TNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ--MAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS---SCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE--SCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE--EEe
Confidence 479999999999999999999999999999999998862 256667999999999999999999999999976 788
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
++|+++
T Consensus 79 ~~~~~s 84 (85)
T 1x4e_A 79 QSGPSS 84 (85)
T ss_dssp SSCCCC
T ss_pred ecCCCC
Confidence 877653
No 55
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=136.60 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce--ecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS--CCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~--l~g~~~~ 208 (231)
++++|||+|||+++|+++|+++|++||.|++|++++.+ | ||||+|++.++|++|++.|++.. +.++ +
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i~Gr--~ 88 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYIAGH--P 88 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEETTE--E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCceeCCc--E
Confidence 48999999999999999999999999999999998653 4 99999999999999999999986 5665 9
Q ss_pred EEEEeecCC
Q 026915 209 IRIDVTGNL 217 (231)
Q Consensus 209 L~V~~ak~~ 217 (231)
|+|+||+..
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999864
No 56
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.2e-20 Score=139.36 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC--ceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--KSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G--~~l~g~~~~ 208 (231)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|.++ +
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQ--P 83 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEETTE--E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE--E
Confidence 47999999999999999999999999999999999763 4 999999999999999999875 678876 9
Q ss_pred EEEEeecCCCCC
Q 026915 209 IRIDVTGNLTGH 220 (231)
Q Consensus 209 L~V~~ak~~~~~ 220 (231)
|+|+||+.....
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 57
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.2e-20 Score=135.52 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG--~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~---~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr--~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ--NPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT---TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC--CCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC---CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE--EEE
Confidence 5799999999999999999999999 999999999862 367888999999999999999999999999987 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|++++++.
T Consensus 77 V~~~~~~~ 84 (90)
T 3p5t_L 77 VTPSNKLE 84 (90)
T ss_dssp ECCC----
T ss_pred EEECCCCc
Confidence 99998754
No 58
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=133.11 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~--G~~l~g~~~~ 208 (231)
++++|||+|||+++++++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|+ +..+.++ +
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~ 82 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHLRNQ--P 82 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEETTE--E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCc--E
Confidence 47999999999999999999999999999999988763 4 99999999999999999875 5668876 9
Q ss_pred EEEEeecCCC
Q 026915 209 IRIDVTGNLT 218 (231)
Q Consensus 209 L~V~~ak~~~ 218 (231)
|+|+||+...
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998754
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=130.34 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||.++++++|+++|++||.|.+|+++.++.. +++++|||||+|.+.++|++|++.|||..+.++ .|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ--EITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--EEEECSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe--EEEE
Confidence 689999999999999999999999999999999988621 123566999999999999999999999999977 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
++++.+.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9998764
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6.3e-20 Score=137.54 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEcCCCC------CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC-
Q 026915 132 SSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA- 204 (231)
Q Consensus 132 ~~tLfVgnLp~------~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g- 204 (231)
+++|||+|||+ ++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..+.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~---tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA---TGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 68999999999 999999999999999999999999872 26677799999999999999999999999997
Q ss_pred CcccEEEEeecCC
Q 026915 205 KSVPIRIDVTGNL 217 (231)
Q Consensus 205 ~~~~L~V~~ak~~ 217 (231)
+ .|+|+++++.
T Consensus 83 r--~l~V~~a~~~ 93 (100)
T 3ns6_A 83 H--RLFLYTMKDV 93 (100)
T ss_dssp C--BCEEEESHHH
T ss_pred e--EEEEEECchh
Confidence 6 9999999753
No 61
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=4.1e-19 Score=142.53 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+++++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM---KKTACGFCFVEYYSRADAENAMRYINGTRLDDR--II 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE--EC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCe--EE
Confidence 3579999999999999999999999999999999999873 266788999999999999999999999999976 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+||+...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998654
No 62
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=134.96 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|++ .|.++ .|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~--~l~ 89 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ---TGKSRGYGFVTMADRAAAERACKDPNP-IIDGR--KAN 89 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS---SCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHhCCC-cCCCE--EEE
Confidence 479999999999999999999999999999999998862 255667999999999999999999998 78876 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997643
No 63
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=143.72 Aligned_cols=81 Identities=10% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~----~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
++++|||+|||+++++++|+ ++|++||.|.+|.+... |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr- 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQGN- 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-
Confidence 47999999999999999876 69999999999987542 45566999999999999999999999999987
Q ss_pred ccEEEEeecCCCC
Q 026915 207 VPIRIDVTGNLTG 219 (231)
Q Consensus 207 ~~L~V~~ak~~~~ 219 (231)
+|+|+||+....
T Consensus 101 -~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 -PLVITFSETPQS 112 (127)
T ss_dssp -CCEEEECCCCCH
T ss_pred -EEEEEEccCcch
Confidence 999999987653
No 64
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=136.26 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++.++|||+|||+++++++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..|.++ .|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----SKSRGFAFITFENPADAKNAAKDMNGKSLHGK--AI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS--BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHHhCCCEECCE--EE
Confidence 3479999999999999999999999999999999999863 55667999999999999999999999999987 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++.+.
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999998655
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.2e-19 Score=138.96 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|++.|||..|.+. .|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 95 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ--PIS 95 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS--BCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHhCCCeeCCe--EEE
Confidence 478999999999999999999999999999999998862 256677999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+||+...
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997543
No 66
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=3.1e-19 Score=136.02 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 128 p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
|++++++|||+|||+++++++|+++|++||.|.+|+|+.+. .++|||||+|.+.++|++|++.|||..+.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-- 75 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR-- 75 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSC--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC------CCCcEEEEEECCHHHHHHHHHHcCCCEECCe--
Confidence 44568999999999999999999999999999999998763 2345999999999999999999999999977
Q ss_pred cEEEEeecCC
Q 026915 208 PIRIDVTGNL 217 (231)
Q Consensus 208 ~L~V~~ak~~ 217 (231)
.|+|+|++..
T Consensus 76 ~l~v~~a~~~ 85 (115)
T 3lqv_A 76 YLVVLYYNAN 85 (115)
T ss_dssp BCEEEECCHH
T ss_pred EEEEEEecCC
Confidence 9999999754
No 67
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-18 Score=131.52 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC------
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA------ 204 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g------ 204 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+++ |.++|||||+|.+.++|++|++.|||..|.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 479999999999999999999999999999999999862 6778899999999999999999999999842
Q ss_pred CcccEEEEeecCCC
Q 026915 205 KSVPIRIDVTGNLT 218 (231)
Q Consensus 205 ~~~~L~V~~ak~~~ 218 (231)
.+++|+|.||+++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 13489999998653
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=136.18 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 100 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVEGR--KIE 100 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-----BCTTEEEEECCCSHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----CCceEEEEEECCHHHHHHHHHHcCCCEECCE--EEE
Confidence 479999999999999999999999999999999998863 3556999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+|++..
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999765
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-20 Score=136.15 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE---TGKPKGYGFCEYQDQETALSAMRNLNGREFSGR--ALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT---TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS--CBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC---CCccceEEEEEECCHHHHHHHHHHhCCCeeCCc--EEE
Confidence 468999999999999999999999999999999998862 367888999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998765
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=128.38 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++++++|+++|++| .|.+|+|+.+.+ |+++|||||+|.+.++|++|++ |||..|.++ .|+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr--~i~ 80 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGGR--YIE 80 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETTE--EEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCCc--EEE
Confidence 47999999999999999999999999 999999999843 6778899999999999999999 999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.+++...
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99998764
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.1e-19 Score=143.75 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~--~l~ 120 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR--ELR 120 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS---SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS--CCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCE--EEE
Confidence 479999999999999999999999999999999998862 256677999999999999999999999999977 999
Q ss_pred EEeecCCCCCCC
Q 026915 211 IDVTGNLTGHVR 222 (231)
Q Consensus 211 V~~ak~~~~~~~ 222 (231)
|+|++.......
T Consensus 121 V~~a~~~~~~~~ 132 (135)
T 2lea_A 121 VQMARYGRPPDS 132 (135)
T ss_dssp EEECCCCCCCTT
T ss_pred EEECCCCCCCcc
Confidence 999987654433
No 72
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=132.58 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce--ecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS--CCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~--l~g~~~~ 208 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.|++.. |.++ +
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--~ 82 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYIAGQ--Q 82 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBSSSS--B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE--E
Confidence 37999999999999999999999999999999988753 4 99999999999999999998765 7765 9
Q ss_pred EEEEeecCCC
Q 026915 209 IRIDVTGNLT 218 (231)
Q Consensus 209 L~V~~ak~~~ 218 (231)
|+|+|++...
T Consensus 83 l~V~~a~~~~ 92 (104)
T 1wex_A 83 AFFNYSTSKR 92 (104)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCcc
Confidence 9999998754
No 73
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=8.2e-19 Score=127.18 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++ +++..+.++ .|+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~--~i~ 83 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN---TGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR--VID 83 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---CCccccEEEEEECCHHHHHHHHH-hCCCEECCE--EEE
Confidence 479999999999999999999999999999999998862 26788899999999999999995 588889876 899
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 74
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=131.40 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~----~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
+.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.. +|||||+|.+.++|++|++.|||..+.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr- 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAVVQMENLQDAIGAVNSLHRYKIGSK- 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 46899999999999999999 99999999999999988743 33999999999999999999999999976
Q ss_pred ccEEEEeecCCCC
Q 026915 207 VPIRIDVTGNLTG 219 (231)
Q Consensus 207 ~~L~V~~ak~~~~ 219 (231)
.|+|+||+....
T Consensus 81 -~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 -KILVSLATGASG 92 (96)
T ss_dssp -EEEEEECCCSSC
T ss_pred -EEEEEEcCCCCC
Confidence 999999987643
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.4e-19 Score=128.79 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|+ .|||..+.++ .|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~--~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF---SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR--QIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS---SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE--ECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHH-hcCCCEECCc--EEEE
Confidence 58999999999999999999999999999999998862 2567779999999999999999 9999999976 9999
Q ss_pred EeecCC
Q 026915 212 DVTGNL 217 (231)
Q Consensus 212 ~~ak~~ 217 (231)
++++..
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 999864
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=129.41 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+ +++.|.++ .|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~--~l~ 86 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---TGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR--WCD 86 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS---SCSEEEEEEEEESSHHHHHHHHH--SCEEETTE--EEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC---CCCccceEEEEECCHHHHHHHHH--cCCeeCCe--EEE
Confidence 479999999999999999999999999999999999862 26788899999999999999998 57788876 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987643
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=5.5e-19 Score=141.60 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 143 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR--ELR 143 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS---CTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECCe--EEE
Confidence 479999999999999999999999999999999998862 256677999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+||+.....
T Consensus 144 v~~a~~~~~~ 153 (158)
T 2kn4_A 144 VQMARYGRPP 153 (158)
T ss_dssp EEEECCSSCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 78
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=128.88 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec--CCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC--AKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~--g~~~~ 208 (231)
++++|||+|||+++++++|+++|++||.|.+|++..++ | ||||+|.+.++|++|++.|||..+. ++ .
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~~g~--~ 84 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----S----FAYIQYESLDAAQAACAKMRGFPLGGPDR--R 84 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-----C----CEEEEESSHHHHHHHHHHHTTCBCSSSSC--B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-----C----EEEEEECCHHHHHHHHHHHCCCEeCCCCc--E
Confidence 37999999999999999999999999999999988653 4 9999999999999999999999999 55 9
Q ss_pred EEEEeecCCCC
Q 026915 209 IRIDVTGNLTG 219 (231)
Q Consensus 209 L~V~~ak~~~~ 219 (231)
|+|+|++....
T Consensus 85 l~V~~a~~~~~ 95 (97)
T 1why_A 85 LRVDFAKSGPS 95 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.6e-19 Score=132.81 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|++||.|.+++++.++ ..|+++|||||+|.+.++|++|++.|||..|.++ .|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr--~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR--KVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc--EEEE
Confidence 5999999999999999999999999999988888875 2367888999999999999999999999999976 9999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
+++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99864
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=127.99 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++++ ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 75 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----------YAFVHMERAEDAVEAIRGLDNTEFQGK--RMH 75 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----------EEEEEESCHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCeeCCc--EEE
Confidence 4799999999999999999999999999999998844 999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 81
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=127.50 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|++++ | ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 73 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK-------N----YGFVHIEDKTAAEDAIRNLHHYKLHGV--NIN 73 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET-------T----EEEEEESSHHHHHHHHHHHTTCBCSSC--BCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-------C----EEEEEECCHHHHHHHHHHhcCCccCCc--EEE
Confidence 479999999999999999999999999999999882 3 999999999999999999999999977 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 74 v~~a~~~~~~ 83 (90)
T 2dnq_A 74 VEASKNKSKA 83 (90)
T ss_dssp EECSSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999886644
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=140.94 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----eecC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK----SCCA 204 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~--v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~----~l~g 204 (231)
++++|||+|||+++|+++|+++|++||.|.. |+|+.++. .|+++|||||+|.+. +|++|+..|||. .|.+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~---tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ---TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS---SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC---CCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4799999999999999999999999999977 99999872 266777999999999 999999999999 8987
Q ss_pred CcccEEEEeecCCC
Q 026915 205 KSVPIRIDVTGNLT 218 (231)
Q Consensus 205 ~~~~L~V~~ak~~~ 218 (231)
+ .|+|+|++...
T Consensus 98 r--~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 K--TINVEFAKGSK 109 (131)
T ss_dssp C--CCCCEECCCSC
T ss_pred E--EEEEEECCCCC
Confidence 6 99999998754
No 83
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=131.88 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++|+++|+++|++|| +++|+|+.+++ |+++|||||+|.+.++|++||+ +|+..|.++ .|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr--~i~ 85 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAMA-KDKANMQHR--YVE 85 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS--CCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCCCeECCc--EEE
Confidence 369999999999999999999999999 45999999863 6788899999999999999995 799999977 899
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|.++......
T Consensus 86 V~~~~~~~~~ 95 (102)
T 1wez_A 86 LFLNSTAGTS 95 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 84
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=128.71 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++|+++|+++|++||.|.+|+++++ ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 74 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------YAFVHMEKEADAKAAIAQLNGKEVKGK--RIN 74 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESCHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 4799999999999999999999999999999998844 999999999999999999999999976 999
Q ss_pred EEeecCCCCCCCC
Q 026915 211 IDVTGNLTGHVRR 223 (231)
Q Consensus 211 V~~ak~~~~~~~r 223 (231)
|+|++.......+
T Consensus 75 v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 75 VELSTKGQKKSGP 87 (90)
T ss_dssp EEESCCCCCCCSC
T ss_pred EEECCCCCCCCCC
Confidence 9999887554433
No 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=129.06 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++++|||+|||+++++++|+++|+.|+ +|+++.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 84 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE---TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KV 84 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS---SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE--EC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC---CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe--EE
Confidence 3579999999999999999999999884 677777752 267788999999999999999999999999976 99
Q ss_pred EEEeecCCCCC
Q 026915 210 RIDVTGNLTGH 220 (231)
Q Consensus 210 ~V~~ak~~~~~ 220 (231)
+|+|++.....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999886544
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=136.81 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 136 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---TEKHRGFAFVEFELAEDAAAAIDNMNESELFGR--TIR 136 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT---TCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE--EEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC---CCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 379999999999999999999999999999999998862 255667999999999999999999999999976 999
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=136.15 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC--ceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--KSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G--~~l~g~~~~ 208 (231)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|.++ +
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--~ 98 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRGQ--P 98 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHHCCCBTTB--C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCe--E
Confidence 47999999999999999999999999999999999874 4 999999999999999999985 568876 9
Q ss_pred EEEEeecCCCCC
Q 026915 209 IRIDVTGNLTGH 220 (231)
Q Consensus 209 L~V~~ak~~~~~ 220 (231)
|+|+||+....+
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999875543
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=143.23 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG--~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~---tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr--~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA---NGQSKGYAEVVVASENSVHKLLELLPGKVLNGE--K 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE--E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCEECCe--E
Confidence 368999999999999999999999999 999999999872 377888999999999999999999999999977 9
Q ss_pred EEEEeecC
Q 026915 209 IRIDVTGN 216 (231)
Q Consensus 209 L~V~~ak~ 216 (231)
|+|+||..
T Consensus 129 l~V~~a~~ 136 (156)
T 3n9u_C 129 VDVRPATR 136 (156)
T ss_dssp CEEEECCH
T ss_pred eEEEEcCC
Confidence 99999964
No 89
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=134.80 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|| .|||..|.++ .|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN---SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV--PII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC---SSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC---CCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe--EEE
Confidence 468999999999999999999999999999999998872 2556679999999999999999 9999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99997643
No 90
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=2.8e-19 Score=132.00 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~----~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
++++|||+|||.++++++|+ ++|++||.|.+|++... |.++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc-
Confidence 47999999999999999999 99999999999998742 44556999999999999999999999999876
Q ss_pred ccEEEEeecCCCC
Q 026915 207 VPIRIDVTGNLTG 219 (231)
Q Consensus 207 ~~L~V~~ak~~~~ 219 (231)
.|+|+|++....
T Consensus 80 -~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 -PMRIQYAKTDSD 91 (97)
T ss_dssp -ECEEEECSSCCT
T ss_pred -EEEEEEccCCCc
Confidence 999999987643
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.7e-19 Score=142.64 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++||..|||..|.++ .|+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 145 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---TGFSKGYALVEYETHKQALAAKEALNGAEIMGQ--TIQ 145 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC---CCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 478999999999999999999999999999999999862 367888999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|.|++....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976543
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=6.8e-18 Score=130.47 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+++++|||+|||+++++++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l 106 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGR--PM 106 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----SSCCSEEEEEESSHHHHHHHHHHHTTEESSSC--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----CCEeeEEEEEECCHHHHHHHHHHcCCCEECCc--EE
Confidence 3579999999999999999999999999999999998863 55666999999999999999999999999977 99
Q ss_pred EEEeecCCCC
Q 026915 210 RIDVTGNLTG 219 (231)
Q Consensus 210 ~V~~ak~~~~ 219 (231)
+|+||.....
T Consensus 107 ~V~~a~~~~~ 116 (124)
T 2kt5_A 107 DIQLVASQID 116 (124)
T ss_dssp EEEEECCTTC
T ss_pred EEEEeCCCCC
Confidence 9999987543
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=8.8e-19 Score=135.18 Aligned_cols=84 Identities=10% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|+ .|||..|.++ .|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF---SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR--TIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT---TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcccEEEEEECCHHHHHHHH-hcCCCeECCe--EEE
Confidence 368999999999999999999999999999999999862 2667889999999999999999 7999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 109 V~~a~~~~~~ 118 (124)
T 2jwn_A 109 VLPKRTNMPG 118 (124)
T ss_dssp EEESSCCCSS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 94
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=127.85 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|++..++ | ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~ 82 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLRGK--QLR 82 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBTTB--CCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeCCc--eEE
Confidence 47999999999999999999999999999999998653 4 999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998754
No 95
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=8.4e-19 Score=135.36 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~---i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
...++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|.++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr- 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHR- 88 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe-
Confidence 34799999999999999999999999999 89999999863 6788899999999999999999 999999976
Q ss_pred ccEEEEeecC
Q 026915 207 VPIRIDVTGN 216 (231)
Q Consensus 207 ~~L~V~~ak~ 216 (231)
.|+|.++..
T Consensus 89 -~i~V~~a~~ 97 (118)
T 2db1_A 89 -YIEVFKSHR 97 (118)
T ss_dssp -EEEEEEECH
T ss_pred -EEEEEECCH
Confidence 999999853
No 96
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=125.46 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-cCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-~G~~l~g~~~~L 209 (231)
++++|||+|||.++++++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| +|..+.++ .|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-----g----~afV~f~~~~~A~~a~~~l~~~~~~~g~--~l 79 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-----Q----CAFIQFATRQAAEVAAEKSFNKLIVNGR--RL 79 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHTTTTTCEETTE--EC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-----C----EEEEEECCHHHHHHHHHHhcCCeeECCC--EE
Confidence 47999999999999999999999999999999999753 4 9999999999999999999 99999976 99
Q ss_pred EEEeec
Q 026915 210 RIDVTG 215 (231)
Q Consensus 210 ~V~~ak 215 (231)
+|+||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999986
No 97
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=133.09 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--eecCCcc
Q 026915 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK--SCCAKSV 207 (231)
Q Consensus 131 ~~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~--~l~g~~~ 207 (231)
++++|||+|||++ +++++|+++|++||.|.+|+|+..+ | ||||+|++.++|++|++.|++. .|.++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr-- 92 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWFQGR-- 92 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCSSSS--
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceECCE--
Confidence 4799999999998 9999999999999999999997543 4 9999999999999999999764 47766
Q ss_pred cEEEEeecCCCCC
Q 026915 208 PIRIDVTGNLTGH 220 (231)
Q Consensus 208 ~L~V~~ak~~~~~ 220 (231)
+|+|+||+.....
T Consensus 93 ~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 93 CVKVDLSEKYKKL 105 (112)
T ss_dssp CCEEEEECSCSSS
T ss_pred EEEEEECcccccc
Confidence 9999999876543
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=135.99 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
+...++|||+|||+++|+++|+++|++||.|.++.++.+. ..|+++|||||+|.+.++|++||+ |||..|.++ .
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR--F 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS--C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc--E
Confidence 3457999999999999999999999999999885555554 236788899999999999999999 999999987 9
Q ss_pred EEEEeecC
Q 026915 209 IRIDVTGN 216 (231)
Q Consensus 209 L~V~~ak~ 216 (231)
|+|.++..
T Consensus 96 i~V~~a~~ 103 (124)
T 1wel_A 96 IQVHPITK 103 (124)
T ss_dssp BEEEEECH
T ss_pred EEEEECCH
Confidence 99999864
No 99
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=1.9e-18 Score=129.46 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-----------YAFIHFDERDGAVKAMEEMNGKDLEGE--NIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------EEEEEeCCHHHHHHHHHHHCCCccCCC--EEE
Confidence 3799999999999999999999999999999998743 999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999987653
No 100
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-18 Score=126.00 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~f--G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
++++|||+|||+++++++|+++|++| |.|.+|++.+ | ||||+|.+.++|++|+..|||..|.++ .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~--~ 80 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------D----YAFVHFSNREDAVEAMKALNGKVLDGS--P 80 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------S----EEEEEESSHHHHHHHHHHHSSEEETTE--E
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------C----eEEEEeCCHHHHHHHHHHhCCCEeCCc--E
Confidence 47999999999999999999999999 9999988653 3 999999999999999999999999976 9
Q ss_pred EEEEeecCCCCC
Q 026915 209 IRIDVTGNLTGH 220 (231)
Q Consensus 209 L~V~~ak~~~~~ 220 (231)
|+|+|++.....
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=131.82 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 131 ASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 131 ~~~tLfVgnLp~~v------te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
.+++|||+|||+++ |+++|+++|++||.|.+|+|+.. .|+++|||||+|.+.++|++|+..|||..+.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~-----~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-----DGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB-----TTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC-----CCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46899999999999 78999999999999999998832 25677799999999999999999999999986
Q ss_pred CcccEEEEeecCCC
Q 026915 205 KSVPIRIDVTGNLT 218 (231)
Q Consensus 205 ~~~~L~V~~ak~~~ 218 (231)
+ .+|+|+|+....
T Consensus 89 ~-~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 Q-HTFRVNLFTDFD 101 (105)
T ss_dssp T-CEEEEECSCCCC
T ss_pred C-ceEEEEEcchHh
Confidence 3 279999997543
No 102
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=126.91 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.| +++.+.. |+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 84 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIEGR--AIR 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe--EEE
Confidence 47999999999999999999999999976 5555532 55667999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987654
No 103
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=4.3e-18 Score=128.99 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+++|||+|||++ +++++|+++|++||.|.+|+|. +| ||||+|.+.++|++|++.|||..|.++ .|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 92 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------KG----YAFVQYSNERHARAAVLGENGRVLAGQ--TL 92 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------TT----EEEEECSSSHHHHHHHHHHTTCEETTE--EC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECCe--EE
Confidence 4699999999999 9999999999999999999981 13 999999999999999999999999976 99
Q ss_pred EEEeecCCCC
Q 026915 210 RIDVTGNLTG 219 (231)
Q Consensus 210 ~V~~ak~~~~ 219 (231)
+|+|++.+..
T Consensus 93 ~V~~a~~~~~ 102 (110)
T 1wf1_A 93 DINMAGEPKP 102 (110)
T ss_dssp CEEESCCCCS
T ss_pred EEEECCCCCC
Confidence 9999986553
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=131.95 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.+ +..+.++ .|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~--~l 96 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---TKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK--TI 96 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT---TCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC---CCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE--EE
Confidence 3579999999999999999999999999999999998862 2566679999999999999999976 5888876 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|+....
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=5.2e-19 Score=124.80 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEe
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDV 213 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ 213 (231)
+|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++ |+|..+.++ .|+|+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~--~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT---TNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK--MVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS---STTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC--CCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE--EEEEEe
Confidence 599999999999999999999999999999998862 25677799999999999999998 999999987 999998
Q ss_pred e
Q 026915 214 T 214 (231)
Q Consensus 214 a 214 (231)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=132.17 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+. +|..|.++ .|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~--~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA---SKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR--VVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT---TSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC---CCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE--EEE
Confidence 469999999999999999999999999999999999862 255667999999999999999988 99999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 9999876543
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=131.58 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i----~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
.++++|||+|||+++|+++|+++|++||.| ..+++.. |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 357999999999999999999999999998 5555552 44556999999999999999999999999876
Q ss_pred cccEEEEeecCCCCC
Q 026915 206 SVPIRIDVTGNLTGH 220 (231)
Q Consensus 206 ~~~L~V~~ak~~~~~ 220 (231)
.|+|+|++.....
T Consensus 96 --~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 96 --ILVIEFGKNKKQR 108 (115)
T ss_dssp --BCEEEECCCCSCC
T ss_pred --EEEEEEccCCCCC
Confidence 9999999876544
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=129.90 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 92 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIEGH--VVK 92 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEECCc--EEE
Confidence 47999999999999999999999999999999999873 4 999999999999999999999999976 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 93 v~~a~~~~~~ 102 (109)
T 1x4g_A 93 CYWGKESPDM 102 (109)
T ss_dssp EECCCCCCSS
T ss_pred EEecCCCCCC
Confidence 9999876543
No 109
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7.2e-18 Score=132.36 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=71.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceE-EEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~-aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
..|||+||++.+|+++|+++|++||.|++|+|... . | | |||+|++.++|++|++.|||..|.+...+|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-G----f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-G----IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-S----EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-C----CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34689999999999999999999999999998653 1 3 7 99999999999999999999999875458999
Q ss_pred EeecCCCCCCCC
Q 026915 212 DVTGNLTGHVRR 223 (231)
Q Consensus 212 ~~ak~~~~~~~r 223 (231)
+||+.......+
T Consensus 97 ~~Ak~~~l~v~~ 108 (124)
T 2e5i_A 97 EYARPTRLNVIR 108 (124)
T ss_dssp ECCSCSCCCCSS
T ss_pred EEecCCcceeec
Confidence 999987654433
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=130.91 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
...++|||+|||+++++++|+++|++|| |.+|+|+.++. ..|+++|||||+|.+.++|++|+ .|||..+.++ .|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~--~l 90 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR--RI 90 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB--CC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe--EE
Confidence 4579999999999999999999999999 99999998851 12566779999999999999999 8999999977 89
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+|++..
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999765
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=131.09 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEe-eCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceecCCc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VKSCCAKS 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~-i~~v~l~-~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~--G~~l~g~~ 206 (231)
++++|||+|||+++++++|+++|++||. |.+|+++ .++. .|+++|||||+|.+.++|++|++.|+ +..+.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD---KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT---TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC---CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 3689999999999999999999999998 9999988 5542 25667799999999999999999996 5889876
Q ss_pred ccEEEEeecCCCC
Q 026915 207 VPIRIDVTGNLTG 219 (231)
Q Consensus 207 ~~L~V~~ak~~~~ 219 (231)
.|+|+||+....
T Consensus 83 -~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 -QIAVDWAEPEID 94 (109)
T ss_dssp -CCEEEESCSSCS
T ss_pred -eEEEEEcCCCCC
Confidence 999999987543
No 112
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=126.10 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||+++++++|+++|++||.|. ++++.++ ++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 87 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG-------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTD--TLR 87 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCCSSSS--CCE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC-------CCcEEEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 479999999999999999999999999996 6777653 233999999999999999999999999987 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-19 Score=124.38 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=69.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.++ ..+.++ .|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~--~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---TKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK--TIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC---SSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC--CCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC---CCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE--EEEEE
Confidence 5799999999999999999999999999999998862 25667799999999999999999999 889877 89999
Q ss_pred ee
Q 026915 213 VT 214 (231)
Q Consensus 213 ~a 214 (231)
||
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=131.07 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++||. ++|..+.++ .|+|
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr--~l~V 83 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET--DLLI 83 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT--TCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECCE--EEEE
Confidence 68999999999999999999999999999999999863 5677799999999999999999 999999987 9999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
.|++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99865
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=4.9e-18 Score=126.62 Aligned_cols=76 Identities=20% Similarity=0.416 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 130 ~~~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
.++++|||+|||+ ++++++|+++|++||.|.+|++. +| ||||+|.+.++|++|++.|||..+.++ .
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~Ai~~l~g~~~~g~--~ 86 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIEXESQEMNFGK--K 86 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SS----EEEEEESSHHHHHHHHHHHTTSEETTE--E
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECCE--E
Confidence 3589999999998 99999999999999999999984 13 999999999999999999999999976 9
Q ss_pred EEEEeecCCC
Q 026915 209 IRIDVTGNLT 218 (231)
Q Consensus 209 L~V~~ak~~~ 218 (231)
|+|+|++...
T Consensus 87 l~V~~a~~~~ 96 (97)
T 2xnq_A 87 LILEVSSSNA 96 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCC
Confidence 9999998753
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.9e-18 Score=128.81 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||.++++++|+++|++||.|.+|++...+ | ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 94 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-----G----CCFIKYDTHEQAAVCIVALANFPFQGR--NLR 94 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTE--ECC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCe--EEE
Confidence 37899999999999999999999999999999998432 4 999999999999999999999999976 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|+|+++
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999976
No 117
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=3.6e-18 Score=140.17 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
...+|||+||++++|+++|+++|++||.|++|+|..++ ++|||||+|++.++|++|++.|||..|.+.+++|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 35679999999999999999999999999999987553 23499999999999999999999999976445999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+||+....
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999997653
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=126.03 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC-ceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-KSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~-i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G-~~l~g~~~~ 208 (231)
+.++|||+|||+++|+++|+++|++||. |..+.+.. + | ||||+|.+.++|++|++.||| ..+.++ .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~-~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~g~--~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-S-----G----YAFVDYPDQNWAIRAIETLSGKVELHGK--I 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-T-----T----EEEECCSCHHHHHHHHHHHTTTCEETTE--E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC-C-----C----EEEEEECCHHHHHHHHHHccCCeeECCE--E
Confidence 4799999999999999999999999999 55555532 1 4 999999999999999999999 999976 9
Q ss_pred EEEEeecCCCCCCCC
Q 026915 209 IRIDVTGNLTGHVRR 223 (231)
Q Consensus 209 L~V~~ak~~~~~~~r 223 (231)
|+|+|++....+..+
T Consensus 75 l~v~~a~~~~~~~~~ 89 (93)
T 2cqh_A 75 MEVDYSVSKKLRSSG 89 (93)
T ss_dssp CEEEECCCCCCCCCS
T ss_pred EEEEEccCccccCCC
Confidence 999999887654443
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=127.21 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++++++|+++|++||.|..+ .. .|.++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 84 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ-----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR--SVS 84 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EE-----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CC-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--EEE
Confidence 47999999999999999999999999987655 22 256778999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99997754
No 120
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=3.9e-19 Score=129.70 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
++|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.+ |++|+..|||..+.++ .|+|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~--~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE---TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR--TIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS---SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS--SCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC---CCCcceEEEEEECCHH-HHHHHHHhCCCEECCe--EEEEE
Confidence 5899999999999999999999999999999998862 2567779999999999 9999999999999977 99999
Q ss_pred eecCCC
Q 026915 213 VTGNLT 218 (231)
Q Consensus 213 ~ak~~~ 218 (231)
||....
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 997754
No 121
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=8.2e-18 Score=133.16 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceE-EEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~-aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
--.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|++|++.|||..|.+.+.+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3567899999999999999999999999999988653 237 9999999999999999999999998545999
Q ss_pred EEeecCCCCCCCC
Q 026915 211 IDVTGNLTGHVRR 223 (231)
Q Consensus 211 V~~ak~~~~~~~r 223 (231)
|+||+.......+
T Consensus 100 I~~ak~~~l~v~~ 112 (130)
T 3zzy_A 100 IDFSKLTSLNVKY 112 (130)
T ss_dssp EEECSCSSCCCCC
T ss_pred EEecCCCceeEEe
Confidence 9999986554443
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=6.5e-18 Score=128.52 Aligned_cols=77 Identities=30% Similarity=0.536 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++ + | ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 96 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N-----G----FAFVEFEEAESAAKAIEEVHGKSFANQ--PLE 96 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T-----T----EEEEECSSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHcCCCEECCe--EEE
Confidence 47999999999999999999999999999999988 2 4 999999999999999999999999876 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++....+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999886544
No 123
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.4e-18 Score=147.61 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG--~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~---tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr--~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ--N 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT---TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB--C
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC---CCccceEEEEEECCHHHHHHHHHHcCCCeECCE--E
Confidence 368999999999999999999999999 999999999872 377888999999999999999999999999987 9
Q ss_pred EEEEeecC
Q 026915 209 IRIDVTGN 216 (231)
Q Consensus 209 L~V~~ak~ 216 (231)
|+|+||+.
T Consensus 142 l~V~~a~~ 149 (229)
T 3q2s_C 142 PVVTPVNK 149 (229)
T ss_dssp CEEEECCH
T ss_pred eEEEECCC
Confidence 99999864
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=2.9e-18 Score=136.40 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~---i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|.++
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 4799999999999999999999999999 88999999863 6788899999999999999999 999999977
Q ss_pred cEEEEeecC
Q 026915 208 PIRIDVTGN 216 (231)
Q Consensus 208 ~L~V~~ak~ 216 (231)
.|+|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999853
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=125.42 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~-v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+.. |+++|||||+|.+.++|++||+. ++..+.++ .|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr--~i 86 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIGHR--YI 86 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS--CC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhCCc--EE
Confidence 4799999999999999999999999999987 88887753 56677999999999999999997 99999977 89
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|.++...
T Consensus 87 ~v~~~~~~ 94 (104)
T 1wg5_A 87 EIFKSSRA 94 (104)
T ss_dssp EEEEECTT
T ss_pred EEEECCHH
Confidence 99998653
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-19 Score=131.51 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++|+++|+++|++||.|.+ +++.++. .|+++|||||+|.+.++|++||+ |||..+.++ .|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~---~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~--~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR---TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN--EIK 88 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE---EETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB--CCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC---CCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc--EEE
Confidence 4789999999999999999999999999877 4554431 14566699999999999999998 999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+|++....
T Consensus 89 V~~a~~~~~ 97 (101)
T 1fj7_A 89 LEKPKGRDG 97 (101)
T ss_dssp EECCSCCCC
T ss_pred EEEcCCCCC
Confidence 999987543
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.4e-18 Score=126.73 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+..|||+||++.+||++|+++|.+||+|++++++..+ | ||||+|.++++|++|++.|||.++.++ +|+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k-----G----faFVey~~~~eA~~Ai~~Ln~~~l~gr--~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ-----G----IALCKYTTREEANKAQMALNNCVLANT--TIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTEEETTE--EEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC-----c----EEEEEECCHHHHHHHHHHhcCCEECCc--EEEE
Confidence 6889999999999999999999999999999987632 4 999999999999999999999999987 9999
Q ss_pred Eeec
Q 026915 212 DVTG 215 (231)
Q Consensus 212 ~~ak 215 (231)
++|.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9993
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.1e-18 Score=125.33 Aligned_cols=76 Identities=20% Similarity=0.422 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++++|||+|||+ ++++++|+++|++||.|.+|+|.+ | ||||+|.+.++|++|++.|||..+.++ .|
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 75 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN-------A----FGFIQFDNPQSVRDAIECESQEMNFGK--KL 75 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET-------T----EEEEEESCHHHHHHHHHHHTCSSCBTT--TB
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC-------C----EEEEEECCHHHHHHHHHHcCCCeeCCc--EE
Confidence 479999999999 999999999999999999999851 3 999999999999999999999999977 99
Q ss_pred EEEeecCCCC
Q 026915 210 RIDVTGNLTG 219 (231)
Q Consensus 210 ~V~~ak~~~~ 219 (231)
+|+|++....
T Consensus 76 ~V~~a~~~~~ 85 (96)
T 2kvi_A 76 ILEVSSSNAR 85 (96)
T ss_dssp CEEEEECCCC
T ss_pred EEEEcCcCCC
Confidence 9999987543
No 129
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=129.39 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|++||.|.+|+|+..+ | ||||+|.+.++|++|++.|||..+.++ +|+|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V 78 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----I----TAIVEFLEPLEARKAFRHLAYSKFHHV--PLYL 78 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-----S----CEEEEESCHHHHHHHHHHHTTCBSSSS--BCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEeCCHHHHHHHHHHhCCCEECCe--EEEE
Confidence 5899999999999999999999999999999987542 3 999999999999999999999999977 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+||+...
T Consensus 79 ~~a~~~~ 85 (111)
T 1whx_A 79 EWAPIGV 85 (111)
T ss_dssp EEEETTT
T ss_pred EECCCCc
Confidence 9997643
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7.6e-18 Score=141.48 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+.+||||+|||+++||++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|++..+.++ .|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~--~i 87 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---TRRSLGYAYVNFQQPADAERALDTMNFDVIKGK--PV 87 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--EC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC---CCCccccccceeCCHHHHHHHHHHhhhhhcCCc--cc
Confidence 3479999999999999999999999999999999999872 267888999999999999999999999999976 89
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
++.++...
T Consensus 88 ~~~~~~~~ 95 (213)
T 4f02_A 88 RIMWSQRD 95 (213)
T ss_dssp EEEECCCC
T ss_pred cccccccc
Confidence 99998654
No 131
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=135.21 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE--------EEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV--------RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v--------~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
++++|||+|||+++|+++|+++|++||.|.+| ++... |+++|||||+|.+.++|++|+..|||..|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 47999999999999999999999999998764 33322 56777999999999999999999999999
Q ss_pred cCCcccEEEEeecCCCC
Q 026915 203 CAKSVPIRIDVTGNLTG 219 (231)
Q Consensus 203 ~g~~~~L~V~~ak~~~~ 219 (231)
.++ .|+|+||+....
T Consensus 118 ~g~--~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 FGK--PMVVQFARSARP 132 (143)
T ss_dssp TTE--ECEEEECCCSCC
T ss_pred CCc--EEEEEECCCCCC
Confidence 976 999999987543
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=129.76 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i-~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++||+. ||..|.++ .
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr--~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----GQGLGQALVQFKNEDDARKSERL-HRKKLNGR--E 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----SSCSSCEEEECSSHHHHHHHGGG-CSEEETTE--E
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CCCccCCe--E
Confidence 347999999999999999999999999999 8899998863 56667999999999999999987 99999976 9
Q ss_pred EEEEeecC
Q 026915 209 IRIDVTGN 216 (231)
Q Consensus 209 L~V~~ak~ 216 (231)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (114)
T 2cpy_A 86 AFVHVVTL 93 (114)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999964
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=126.84 Aligned_cols=77 Identities=22% Similarity=0.486 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
++|||+|||+++|+++|+++|++||.|.+|+++.+ ..| ||||+|.+.++|++|++.|||..+.++ .|+|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g----~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPG----FAFVEFEDPRDAEDAVRGLDGKVICGS--RVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSS----EEEEECSSHHHHHHHHHHHHHSCSSSC--CCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCC----EEEEEECCHHHHHHHHHHHCCCeECCc--EEEEE
Confidence 58999999999999999999999999999999887 124 999999999999999999999999977 89999
Q ss_pred eecCCCC
Q 026915 213 VTGNLTG 219 (231)
Q Consensus 213 ~ak~~~~ 219 (231)
|++....
T Consensus 71 ~a~~~~~ 77 (101)
T 2hvz_A 71 LSTGMPR 77 (101)
T ss_dssp ESSSCCC
T ss_pred EccCCCC
Confidence 9987653
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=124.55 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~v------te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
+++|||+|||.++ ++++|+++|++||.|.+|+++.. .|+++|||||+|.+.++|++|++.|||..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-----DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-----TTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-----CCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4799999999999 78999999999999999998732 256777999999999999999999999999864
Q ss_pred cccEEE
Q 026915 206 SVPIRI 211 (231)
Q Consensus 206 ~~~L~V 211 (231)
.+|+|
T Consensus 76 -~~l~V 80 (81)
T 2krb_A 76 -HTFRV 80 (81)
T ss_dssp -SCCCC
T ss_pred -eeEEe
Confidence 14554
No 135
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-17 Score=121.04 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|| ++|+++|+++|++||.|.+|+|...+ | ||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~ 80 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVESV--QLK 80 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHTTTEEETTE--EEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCC-----C----EEEEEECCHHHHHHHHHHhCCCeECCe--EEE
Confidence 4799999996 89999999999999999999985322 4 999999999999999999999999876 999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|++.....
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=4.2e-18 Score=131.03 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
..++|||+|||+++++++|+++|++|| .|..|+|..++ ++|||||+|.+.++|++||+.|||..|.++ .|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr--~i 97 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------FDGTGALEFPSEEILVEALERLNNIEFRGS--VI 97 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------SSCCEEEEESSHHHHHHHHHHTTTEEETTE--EE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------CCCEEEEEECCHHHHHHHHHHcCCCEECCe--EE
Confidence 478999999999999999999999999 89999886432 334999999999999999999999999987 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|++++.+.
T Consensus 98 ~V~~a~~~p 106 (111)
T 2jvr_A 98 TVERDDNPP 106 (111)
T ss_dssp EEEESCC--
T ss_pred EEEECCCCC
Confidence 999997653
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.9e-17 Score=129.34 Aligned_cols=81 Identities=25% Similarity=0.385 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||.++++++|+++|++||.|.+++++.++. .|.++|||||+|.+.++|++|+..|||..+.++ .|+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~i~ 160 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR--PLR 160 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc--EEE
Confidence 478999999999999999999999999999999998862 267888999999999999999999999999976 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|+||+.
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999863
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=3.1e-17 Score=130.07 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|+|..+.++ .|+|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK--TIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CCcceeEEEEEECCHHHHHHHHHHcCCCccCCc--eEEE
Confidence 68999999999999999999999999999999999862 267788999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+|++...
T Consensus 77 ~~~~~~~ 83 (167)
T 1fxl_A 77 SYARPSS 83 (167)
T ss_dssp EECCCCC
T ss_pred EecCCCc
Confidence 9998654
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=120.88 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~-l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+++|||+|||+++++++|+++|++||.|.+|+ |+.++. .| .|||+|.+.++|++|++.|||..|.++ .|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TA----VVNVTYSSKDQARQALDKLNGFQLENF--TL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SE----EEEEEESSHHHHHHHHHHHTTCBCSSC--BC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CC----EEEEEECCHHHHHHHHHHhCCCEECCc--EE
Confidence 478999999999999999999999999999995 777752 13 599999999999999999999999977 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+|++..
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999875
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.3e-17 Score=131.43 Aligned_cols=78 Identities=21% Similarity=0.433 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+. +| ||||+|.+.++|++|++.|||..|.++ +|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP----PG----FAFVEFEDPRDAADAVRELDGRTLCGC--RVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS----CS----EEEEEESSHHHHHHHHHHHSSSCSSSS--CCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC----Cc----EEEEEECCHHHHHHHHHHcCCCEECCe--EEE
Confidence 47999999999999999999999999999999998872 24 999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++++.
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998753
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-19 Score=135.63 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~--------v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
++++|||+|||+++++++|+++|++||.|.+ |+|+.++. .|+++|||||+|.+.++|++|++.|||..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---TGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3799999999999999999999999999998 88888752 256677999999999999999999999999
Q ss_pred cCCcccEEEEeecCCC
Q 026915 203 CAKSVPIRIDVTGNLT 218 (231)
Q Consensus 203 ~g~~~~L~V~~ak~~~ 218 (231)
.++ .|+|+|++...
T Consensus 83 ~g~--~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGN--PIKVSFATRRA 96 (116)
Confidence 977 99999998754
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.9e-17 Score=130.84 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|+|..+.++ .|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC---CCccceEEEEEECCHHHHHHHHHhcCCCEeCCc--EEE
Confidence 379999999999999999999999999999999998862 256777999999999999999999999999876 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 77 v~~~~~~~ 84 (168)
T 1b7f_A 77 VSYARPGG 84 (168)
T ss_dssp EEECCCCS
T ss_pred EEecCCCc
Confidence 99998654
No 143
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=126.05 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
...+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.+.++|++|| .||+..|.++ .|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr--~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR--YVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe--EEE
Confidence 35899999999999999999999999 899999998863 566779999999999999999 6999999976 899
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 988753
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=3.2e-18 Score=120.57 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEe
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDV 213 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ 213 (231)
||||+|||+++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++ +++..+.++ .|+|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~--~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK---TNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS--KCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC---CSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB--CCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE--EEEEEE
Confidence 699999999999999999999999999999988862 25667799999999999999998 488889977 889887
Q ss_pred e
Q 026915 214 T 214 (231)
Q Consensus 214 a 214 (231)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=127.70 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee---cCC
Q 026915 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC---CAK 205 (231)
Q Consensus 131 ~~~tLfV--gnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l---~g~ 205 (231)
++++||| +||++++++++|+++|++||.|.+|.|+.++ | ||||+|.+.++|++|++.|||..+ .++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----S----CEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4799999 7799999999999999999999999887542 4 999999999999999999999987 223
Q ss_pred cccEEEEeecCCCC
Q 026915 206 SVPIRIDVTGNLTG 219 (231)
Q Consensus 206 ~~~L~V~~ak~~~~ 219 (231)
+++|.|.|++....
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 56899999986543
No 146
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.8e-17 Score=127.18 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc--
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP-- 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~-- 208 (231)
..++|||+|||+++++++|+++|++||.|++|+|+.+ | ||||+|++.++|++||+.|||..|.++ .
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr--~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSH--EGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCT--TSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCc--Eee
Confidence 4689999999999999999999999999999999876 3 999999999999999999999999987 6
Q ss_pred ---EEEEeecCCC
Q 026915 209 ---IRIDVTGNLT 218 (231)
Q Consensus 209 ---L~V~~ak~~~ 218 (231)
|+|..++...
T Consensus 83 ~~~i~v~~~~~~~ 95 (115)
T 3beg_B 83 TAYIRVKVDGPRS 95 (115)
T ss_dssp CCBCEEEECC---
T ss_pred eEEEEeccCCCCC
Confidence 7787776543
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.6e-17 Score=135.95 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++++|||+|||+++++++|+++|++||.|++|+|+.+++ |.++|||||+|.+.++|++|++.|||..|.++ .|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr--~l 159 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDGR--PM 159 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS--BC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE--EE
Confidence 4579999999999999999999999999999999998863 55666999999999999999999999999987 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+||....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999997643
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=126.61 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~---i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
+..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..+.++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr- 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQR- 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe-
Confidence 35799999999999999999999999998 89999998863 5667799999999999999999 999999877
Q ss_pred ccEEEEeecC
Q 026915 207 VPIRIDVTGN 216 (231)
Q Consensus 207 ~~L~V~~ak~ 216 (231)
.|+|.++..
T Consensus 83 -~i~V~~a~~ 91 (107)
T 2lmi_A 83 -YVEVYEINN 91 (107)
T ss_dssp -CCCCEECCH
T ss_pred -EEEEEECCH
Confidence 899999864
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=8.8e-17 Score=133.16 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|||..|.++ .|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~--~i~ 198 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT---TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ--YLR 198 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS--BCE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC---CCCcCceEEEEecCHHHHHHHHHHccCCEeCCc--EEE
Confidence 468999999999999999999999999999999999862 267788999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++.+.
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99998764
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=9.3e-18 Score=125.18 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||+++++++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++ ++..+.+. .|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~--~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVE--SQINFHGK--KLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTT--CCCEETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHh--CCCeECCE--EEE
Confidence 468999999999999999999999999999999999862 6778899999999999999998 99999976 899
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.++....
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99987543
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=4e-17 Score=137.06 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~--~i~ 174 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVF 174 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE--EEE
Confidence 36899999999999999999999999999999999886 34677999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+||+..
T Consensus 175 V~~a~~~ 181 (213)
T 4f02_A 175 VGRFKSR 181 (213)
T ss_dssp EEECCCH
T ss_pred EEEcCCC
Confidence 9999764
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=7.4e-17 Score=131.91 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+.++|||+|||+++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK--KL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT---TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE--EC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCE--EE
Confidence 4579999999999999999999999999999999999862 267788999999999999999999999999976 99
Q ss_pred EEEeecCCCC
Q 026915 210 RIDVTGNLTG 219 (231)
Q Consensus 210 ~V~~ak~~~~ 219 (231)
+|+|+++...
T Consensus 187 ~v~~a~~~~~ 196 (198)
T 2yh0_A 187 LVQRASVGAK 196 (198)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=7.9e-17 Score=128.93 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+|+++.++. .|+++|||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 167 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK--KLL 167 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe--EEE
Confidence 379999999999999999999999999999999999862 267888999999999999999999999999976 999
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|+||
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=5.4e-17 Score=151.35 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||++||+++|+++|++||.|+.|+|+.++. .|+++|||||+|.+.++|++||..|||..|.+. .|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr--~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR---SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR--RVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC---CCCccceEEEeeccHHHHHHHHHHcCCCEECCE--EEE
Confidence 478999999999999999999999999999999998862 256677999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998643
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.1e-18 Score=132.81 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i----~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
+...+|||+|||+++|+++|+++|++||.| .+|+|+.++. |+++|||||+|.+.++|++||+. |+..|.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 347999999999999999999999999975 6899998853 67888999999999999999986 99888876
Q ss_pred cccEEEEeec
Q 026915 206 SVPIRIDVTG 215 (231)
Q Consensus 206 ~~~L~V~~ak 215 (231)
.|+|..+.
T Consensus 96 --~i~V~~a~ 103 (123)
T 2dha_A 96 --YIELFRST 103 (123)
T ss_dssp --EECCEEEC
T ss_pred --EEEEEECC
Confidence 88888874
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=1.5e-16 Score=126.55 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+++++.++. .|+++|||||+|.+.++|.+|++.|||..+.+.+++|+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL---TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC---CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 368999999999999999999999999999999998862 26678899999999999999999999999988556999
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|+||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=5.9e-17 Score=118.11 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||+++++++|+++|++| .|.+|++.. ++|||||+|.+.++|++|++.|||..+.++ .|+|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~V 72 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR---------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGK--DLIV 72 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG---------GGTEEEECCSCHHHHHHHHHHHTTEEETTE--EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC---------CCcEEEEEECCHHHHHHHHHHhCCCeECCc--EEEE
Confidence 6899999999999999999999999 999999851 233999999999999999999999999977 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+|+....
T Consensus 73 ~~a~~~~ 79 (88)
T 1wg1_A 73 QLQPTDA 79 (88)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9997643
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=9e-17 Score=118.11 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|++.++|+ .|+|..+..+++.|+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 4799999999999999999999999999999999875 2339999999999988 367777665555899
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.+|+++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997654
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.8e-17 Score=127.31 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
++|||+|||.++|+++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|+|..+.++ .|+|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENN--IVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC--eeEEE
Confidence 5899999999999999999999999999999998864 45677999999999999999999999999976 99999
Q ss_pred eecCCC
Q 026915 213 VTGNLT 218 (231)
Q Consensus 213 ~ak~~~ 218 (231)
|+....
T Consensus 75 ~~~~~~ 80 (166)
T 3md3_A 75 WAFQSQ 80 (166)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997654
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.1e-17 Score=133.71 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
...++|||+|||+++|+++|+++|++|| |++|+|+.++. |+++|||||+|++.++|++|| .+|+..|.++ .|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR--~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQHR--YI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC--CC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE--EE
Confidence 3468999999999999999999999999 77999998863 567779999999999999999 7999999977 89
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|..+....
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999987654
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=9.1e-17 Score=128.48 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-cccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-SVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~~~L 209 (231)
..++|||+|||.++|+++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|||..+.+. +++|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 468999999999999999999999999999999998853 67788999999999999999999999887642 3599
Q ss_pred EEEeec
Q 026915 210 RIDVTG 215 (231)
Q Consensus 210 ~V~~ak 215 (231)
+|+||.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=8.3e-17 Score=131.40 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+.+++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+. ++..+.++ .|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~--~l 84 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---TKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR--VV 84 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE--EC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---CCCccceEEEEeCCHHHHHHHHhc-CCCEECCE--Ee
Confidence 4579999999999999999999999999999999999862 267788999999999999999976 89999976 89
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|.++....
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999987643
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.5e-16 Score=126.00 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+++++.++. .|.++|||||+|.+.++|++|++.|||..+.++..+|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV---TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 368999999999999999999999999999999998862 26678899999999999999999999999998755799
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|+||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9987
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=117.99 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|++||.|.+| +.++. .|+ ||||+|.+.++|++|++ |||..|.++ .|+|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~---~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~--~l~V 76 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD---KGV---FAIVEMGDVGAREAVLS-QSQHSLGGH--RLRV 76 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS---SCC---EEEEEESSHHHHHHHHT-CSCCEETTE--ECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC---CCc---EEEEEECCHHHHHHHHh-cCCeEECCE--EEEE
Confidence 6899999999999999999999999999987 44431 122 99999999999999999 999999977 9999
Q ss_pred EeecCCCCC
Q 026915 212 DVTGNLTGH 220 (231)
Q Consensus 212 ~~ak~~~~~ 220 (231)
+++......
T Consensus 77 ~~a~~~~~~ 85 (94)
T 2e5g_A 77 RPREQKEFQ 85 (94)
T ss_dssp BCSCCSCCC
T ss_pred EECCcCCCC
Confidence 998765433
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=124.03 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=58.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
+++|||+|||+++|+++|+++|++||.|. +.++.++.....|+++|||||+|.+.++|++||+.|+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 69999999999999999999999999999 8888776332236778899999999999999999993
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=119.27 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHhhcCC-CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SST-LFVEGLPSDCSRRE----VAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~t-LfVgnLp~~vte~e----L~~lF~~f-G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
+.| |||+|||+++++++ |+++|++| |.|.+|. +| ||||+|.+.++|++|++.|||..+.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG----~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GC----SAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TT----CEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cC----EEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 566 99999999999998 55899999 4998881 14 999999999999999999999999987
Q ss_pred cccEEEEeecCCCCCCCC
Q 026915 206 SVPIRIDVTGNLTGHVRR 223 (231)
Q Consensus 206 ~~~L~V~~ak~~~~~~~r 223 (231)
+|+|+||+.......-
T Consensus 75 --~i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 75 --RIIVSFTPKNRELCET 90 (96)
T ss_dssp --CCEEESSCCSCCCCCC
T ss_pred --eEEEEecCCCcceeEe
Confidence 9999999987655443
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.5e-16 Score=133.95 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=70.3
Q ss_pred CCEEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLP-SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp-~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+++|||+||| +++++++|+++|++||.|.+|+|+.++ +| ||||+|.+.++|++||+.|||..+.++ .|+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~~~g~--~l~ 73 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PG----AAMVEMADGYAVDRAITHLNNNFMFGQ--KMN 73 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TT----CEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc--eEE
Confidence 7999999999 899999999999999999999998763 24 999999999999999999999999986 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.|++..
T Consensus 74 v~~s~~~ 80 (205)
T 3tyt_A 74 VCVSKQP 80 (205)
T ss_dssp EEECSCS
T ss_pred EEEccCC
Confidence 9999754
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1.1e-16 Score=125.80 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~--~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
..++|||+|||+++|+++|+++|++| .|+ +|+|+.++. |+++|||||+|.+.++|++||+ +++..|.++ .
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR--~ 112 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALG-KHKERIGHR--Y 112 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB--C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-HCCCEECCE--E
Confidence 46899999999999999999999999 787 899998863 6677799999999999999998 477888876 8
Q ss_pred EEEEeec
Q 026915 209 IRIDVTG 215 (231)
Q Consensus 209 L~V~~ak 215 (231)
|+|..+.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 9998874
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=3.5e-16 Score=135.53 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~----~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
++++|||+|||+++|+++|+ ++|++||.|.+|++... |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCCc-
Confidence 47999999999999999977 89999999999998863 45666999999999999999999999999987
Q ss_pred ccEEEEeecCCC
Q 026915 207 VPIRIDVTGNLT 218 (231)
Q Consensus 207 ~~L~V~~ak~~~ 218 (231)
.|+|+|++...
T Consensus 81 -~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 -PMRIQYAKTDS 91 (282)
T ss_pred -EEEEEEeccCc
Confidence 99999997654
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.5e-16 Score=125.90 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-cccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-SVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~~~L 209 (231)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++... .++++|||||+|.+.++|++|++.|+|..+... ...+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN-PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS-SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 37899999999999999999999999999999999987321 126788999999999999999999999886533 4588
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
.+.++....
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 899887554
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=3e-16 Score=128.12 Aligned_cols=82 Identities=11% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|.++|||||+|.+.++|++|+.. +|..|.++ .|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~--~i~ 176 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG---SGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH--NCE 176 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE--ECE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCccceEEEEECCHHHHHHHHHh-CCcEECCE--EEE
Confidence 368999999999999999999999999999999999862 267888999999999999999986 79999976 899
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.||.+..
T Consensus 177 v~~a~~k~ 184 (196)
T 1l3k_A 177 VRKALSKQ 184 (196)
T ss_dssp EEECC---
T ss_pred EEecCChh
Confidence 99997754
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.2e-16 Score=127.33 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||.++++++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|++ ++|..+.++ .|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~--~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD---TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR--KIE 159 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS---SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS--CEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHh-CCCEEeCCe--EEE
Confidence 368999999999999999999999999999999998862 26677799999999999999998 899999977 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+||+++
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 9999764
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.6e-16 Score=121.43 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++++|||+|| ++|+++|+++|++||.|.+|+|...+ | ||||+|.+.++|++|++.|||..+.++ .|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~k-----g----~aFV~f~~~~~A~~Ai~~lng~~~~g~--~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVESV--QL 103 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCBCSSC--BC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEECCe--EE
Confidence 35899999996 79999999999999999999986322 4 999999999999999999999999876 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++...
T Consensus 104 ~V~~a~~~~ 112 (121)
T 2bz2_A 104 KVNIARKQP 112 (121)
T ss_dssp EEEECCSSC
T ss_pred EEEEeCCCC
Confidence 999998754
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3.4e-16 Score=129.63 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||.++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++.|+|..+.++ .|+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~--~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV---TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR--NIK 101 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C---C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C--CCE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---CCccCceEEEEeCCHHHHHHHHHHccCCeeCCe--eEE
Confidence 368999999999999999999999999999999998862 245666999999999999999999999999977 899
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.++...
T Consensus 102 v~~~~~~ 108 (216)
T 2qfj_A 102 VGRPSNI 108 (216)
T ss_dssp EECCSCC
T ss_pred EecCCCc
Confidence 9988654
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.2e-16 Score=113.94 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~f----G-------~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G 199 (231)
+.++|||+|||+++++++|+++|++| | .|.++++..++ | ||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-----g----~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-----S----EEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-----c----EEEEEcCCHHHHHHHH-hcCC
Confidence 36999999999999999999999999 8 89999988663 4 9999999999999999 9999
Q ss_pred ceecCCcccEEEEe
Q 026915 200 KSCCAKSVPIRIDV 213 (231)
Q Consensus 200 ~~l~g~~~~L~V~~ 213 (231)
..+.++ .|+|+.
T Consensus 75 ~~~~g~--~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQ--SLKIRR 86 (87)
T ss_dssp CEETTE--ECEEEC
T ss_pred CEECCe--EEEEeC
Confidence 999976 888873
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=6.9e-16 Score=130.80 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++++|||+|||+ ++++++|+++|++||.|.+|+|+.++ .| ||||+|.+.++|++|++.|||..+.++ .|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g----~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l 102 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KE----NALVQMADGNQAQLAMSHLNGHKLHGK--PI 102 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SC----CEEEEESCHHHHHHHHHHHTTCBCSSS--BC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CC----EEEEEECCHHHHHHHHHHhCCCeECCe--EE
Confidence 489999999999 99999999999999999999999885 23 999999999999999999999999976 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+|++..
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99999865
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=112.00 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ +++..+...++.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCceeCCEEEE
Confidence 3799999999999999999999999999999998865 22399999999999975 45555533345899
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|+|+++....
T Consensus 72 v~~a~~~~~~ 81 (88)
T 1wf0_A 72 ISNAEPKHNS 81 (88)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9999876543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=4.8e-16 Score=130.81 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCe--EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC--c
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK--S 206 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i--~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~--~ 206 (231)
++++|||+|||+++|+++|+++|++||.| .+|+++.++ |.++|||||+|.+.++|.+||..|||+.|.+. .
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 47899999999999999999999999999 899998875 33446999999999999999999999999877 2
Q ss_pred ccEEEEee
Q 026915 207 VPIRIDVT 214 (231)
Q Consensus 207 ~~L~V~~a 214 (231)
.++.|.||
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 46787776
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=7.8e-15 Score=127.02 Aligned_cols=76 Identities=30% Similarity=0.513 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec-CCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC-AKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~-g~~~~L 209 (231)
++++|||+|||.++++++|+++|++||.|.+|+|+.++ .| ||||+|.+.++|++|++.|||..|. ++ .|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l 275 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HD----IAFVEFDNEVQAGAARDALQGFKITQNN--AM 275 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----Cc----EEEEEeCCHHHHHHHHHHcCCcEeCCCC--EE
Confidence 47899999999999999999999999999999999764 13 9999999999999999999999999 66 99
Q ss_pred EEEeecC
Q 026915 210 RIDVTGN 216 (231)
Q Consensus 210 ~V~~ak~ 216 (231)
+|+||+.
T Consensus 276 ~v~~akk 282 (282)
T 3pgw_A 276 KISFAKK 282 (282)
T ss_pred EEEEecC
Confidence 9999973
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=2e-15 Score=114.75 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~-----~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.. .++++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 489999999973 2478999999999999999999987521 245677999999999999999999999999976
Q ss_pred cccEEEEeecC
Q 026915 206 SVPIRIDVTGN 216 (231)
Q Consensus 206 ~~~L~V~~ak~ 216 (231)
.|+|+|+..
T Consensus 85 --~i~v~~a~~ 93 (105)
T 2pe8_A 85 --VVKACFYNL 93 (105)
T ss_dssp --ECEEEECCH
T ss_pred --EEEEEEcCH
Confidence 999999965
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.4e-15 Score=127.05 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.. |+++|||||+|++.++|++|+..++ ..+.++ .|+|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr--~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKYKET--DLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEETTE--ECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeECCE--EEEE
Confidence 58999999999999999999999999999999998863 6778899999999999999997664 588876 9999
Q ss_pred EeecCC
Q 026915 212 DVTGNL 217 (231)
Q Consensus 212 ~~ak~~ 217 (231)
.|++.-
T Consensus 182 ~~~~~y 187 (193)
T 2voo_A 182 LFKDDY 187 (193)
T ss_dssp EETTTC
T ss_pred EEhHHH
Confidence 998753
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=7.7e-16 Score=133.35 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCC---------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 026915 131 ASSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS 201 (231)
Q Consensus 131 ~~~tLfVgnLp~~v---------te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~ 201 (231)
.++||||+||+.++ +|++|+++|++||.|.+|+|+..+ | ||||+|.+.++|+.|+++|+|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 47999999999998 799999999999999999999753 4 99999999999999999999999
Q ss_pred e------------cCCcccEEEEeecCCC
Q 026915 202 C------------CAKSVPIRIDVTGNLT 218 (231)
Q Consensus 202 l------------~g~~~~L~V~~ak~~~ 218 (231)
| .++ .|+|.||+...
T Consensus 204 l~~~~~~e~~~~~~gr--~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGT--GLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSC--CCEEEECC---
T ss_pred EeccccccccccCCCC--EEEEEEccCCC
Confidence 9 554 89999998654
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.8e-16 Score=122.03 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=69.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCC----HHH----HHHHHH--Hhc
Q 026915 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAH----AATAMD--ALQ 198 (231)
Q Consensus 133 ~tLfVgnL----p~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~----~~~----A~~Al~--~L~ 198 (231)
++|||+|| |+.+++.+|+++|++||+|.+|+++.|+. .|+|+|||||+|.+ +++ |.+|+. .|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~---Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN---SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT---TCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 78999999 99999999999999999999999999983 38899999999996 333 788888 789
Q ss_pred CceecCCcccEEEEeecC
Q 026915 199 VKSCCAKSVPIRIDVTGN 216 (231)
Q Consensus 199 G~~l~g~~~~L~V~~ak~ 216 (231)
|..|.++ +|+|.+-+.
T Consensus 80 g~~I~Gr--~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMGF--KFEVILNKH 95 (136)
T ss_dssp CEEETTE--EEEEEECCT
T ss_pred CCeecCc--EEEEEECcc
Confidence 9999987 999998654
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=8.1e-16 Score=122.43 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++|++. +..+.++ .|.|
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~--~i~v 75 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA---TGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK--VIDP 75 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT---TSSCCSCEEEEESSTHHHHHHHHS--CCEETTE--ECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC---CCCccceEEEEEccHHHHHHHHhc--ccccCCe--Eccc
Confidence 68999999999999999999999999999999998862 256677999999999999999984 5677765 7888
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
.++..
T Consensus 76 ~~~~~ 80 (167)
T 2cjk_A 76 KRAIP 80 (167)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 88754
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.5e-15 Score=112.57 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCC-----------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 026915 131 ASSTLFVEGLPSDCS-----------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (231)
Q Consensus 131 ~~~tLfVgnLp~~vt-----------e~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G 199 (231)
++++|+|.||....+ +++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++|+..|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~------~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH------PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC------TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC------CCEEEEEEECCHHHHHHHHHHcCC
Confidence 489999999954432 6899999999999999966 4431 344999999999999999999999
Q ss_pred ceecCCcccEEEEeecCCCC
Q 026915 200 KSCCAKSVPIRIDVTGNLTG 219 (231)
Q Consensus 200 ~~l~g~~~~L~V~~ak~~~~ 219 (231)
..+.++ +|+|+|+....+
T Consensus 87 ~~~~gr--~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGR--QITAQAWDGTTD 104 (112)
T ss_dssp CEETTE--ECEEEECCSCCC
T ss_pred CEECCc--EEEEEEeCCCCC
Confidence 999976 999999987543
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=3.2e-15 Score=129.57 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~v-te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
..++|||+|||+++ ++++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|.+|+..|||..+.++ .|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 256 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGS--HL 256 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTE--EC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCe--EE
Confidence 47999999999995 9999999999999999999998863 67788999999999999999999999999876 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++...
T Consensus 257 ~v~~a~~~~ 265 (284)
T 3smz_A 257 RVSFCAPGP 265 (284)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999997654
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=3.8e-15 Score=119.81 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|..+ ... |.++|||||+|.+.++|++|+..|||..+.++ .|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR--SVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETTE--EEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCe--EEE
Confidence 47999999999999999999999999987655 222 45566999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+||+++
T Consensus 168 v~~a~~k 174 (175)
T 1fje_B 168 LYYTGEK 174 (175)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 9999764
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=122.68 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=70.6
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+++|||+|||+ ++++++|+++|++||.|.+|+++.++ .| ||||+|.+.++|++|++.|||..+.++ .|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~~~~~~g~--~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KE----NALVQMADGNQAQLAMSHLNGHKLHGK--PIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SS----CCEEECTTTHHHHHHHHHHTTCCCSSC--CCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCeecCe--EEE
Confidence 68999999999 99999999999999999999999875 23 999999999999999999999999876 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+|++..
T Consensus 73 v~~a~~~ 79 (198)
T 1qm9_A 73 ITLSKHQ 79 (198)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999865
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=9.2e-15 Score=126.30 Aligned_cols=76 Identities=24% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||+++|+++|+++|++||.|.+|++..++ | ||||+|.+.++|++|+..|+|..+.++ .|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-----g----~afV~f~~~~~A~~A~~~l~g~~i~g~--~l~ 89 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-----G----FGFIRLESRTLAEIAKAELDGTILKSR--PLR 89 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----c----EEEEEECCHHHHHHHHHHcCCcEECCc--eeE
Confidence 47899999999999999999999999999999997553 4 999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.|+...
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9999753
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.1e-14 Score=123.30 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec-CCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC-AKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~-g~~~~ 208 (231)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. .| ||||+|.+.++|++|++.|||..+. ++ .
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~l~g~~~~~g~--~ 219 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENH--H 219 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TT----CEEEEESSHHHHHHHHHHHTTCBSSSSC--B
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----Cc----EEEEEECCHHHHHHHHHHHCCCccCCCC--e
Confidence 379999999999999999999999999 99999997642 14 9999999999999999999999998 66 9
Q ss_pred EEEEeecCC
Q 026915 209 IRIDVTGNL 217 (231)
Q Consensus 209 L~V~~ak~~ 217 (231)
|+|+|++++
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999864
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=6.4e-15 Score=121.09 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec-CCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC-AKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~-g~~~~ 208 (231)
++++|||+|||.++++++|+++|++|| .|.+|+++.+. .| ||||+|.+.++|++|++.|||..+. ++ .
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g----~afV~f~~~~~A~~A~~~l~g~~~~~g~--~ 188 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGENH--H 188 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SS----CEEEECSSHHHHHHHHHHHTSSCCSSCC--S
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----Cc----EEEEEeCCHHHHHHHHHHhcCCccCCCC--e
Confidence 479999999999999999999999999 99999997653 23 9999999999999999999999998 65 9
Q ss_pred EEEEeecCC
Q 026915 209 IRIDVTGNL 217 (231)
Q Consensus 209 L~V~~ak~~ 217 (231)
|+|+|++++
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999864
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1.5e-14 Score=125.41 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++|+++|+++|++||.|.+|+++.++. .|.++|||||+|.+.++|++|+..|+|..+.++ .|+|
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v 169 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER---TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR--TLYV 169 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEE
Confidence 58999999999999999999999999999999998862 267888999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
.|+....
T Consensus 170 ~~a~~~~ 176 (284)
T 3smz_A 170 HWTDAGQ 176 (284)
T ss_dssp EECCGGG
T ss_pred EECCCCC
Confidence 9997643
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=8e-15 Score=127.55 Aligned_cols=82 Identities=10% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
..++|||+|||++ +++++|+++|++||.|.+|+|+.+... .|.++|||||+|.+.++|++|+ .|||..|.++ .|
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~--~i 283 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR--EI 283 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTE--EE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc--EE
Confidence 4799999999999 999999999999999999999987530 1566779999999999999999 9999999976 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+||+++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999764
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2.7e-15 Score=120.61 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++++|||+|||+++|+++|+++|++||.+..+.+..... |+++|||||+|.+.++|++|+ .|||..+.++ .|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l 83 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN--EI 83 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE----ETTTTEEEEEESSHHHHHHHH-HGGGEEETTE--EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC----CccccEEEEEECCHHHHHHHH-hcCCCEeCCe--EE
Confidence 3579999999999999999999999999876532222222 445569999999999999999 5999999976 99
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
+|+|++...
T Consensus 84 ~v~~~~~~~ 92 (175)
T 1fje_B 84 KLEKPKGRD 92 (175)
T ss_dssp EEECCCCSS
T ss_pred EEecCCCcc
Confidence 999998654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.1e-14 Score=124.05 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC-ceec-CCcccE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-KSCC-AKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G-~~l~-g~~~~L 209 (231)
+++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|.+|+..||+ ..+. ..+++|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 68999999999999999999999999999999999853 67788999999999999999999955 4443 123499
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
.|.++....
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999997643
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3e-14 Score=108.14 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCEEEEcCC--CCCCC--------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 026915 132 SSTLFVEGL--PSDCS--------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS 201 (231)
Q Consensus 132 ~~tLfVgnL--p~~vt--------e~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~ 201 (231)
++.|.|.|+ |.++. +++|+++|++||.|.+|+|+.++..+. ++++||+||+|.+.++|++|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 799999998 44443 468999999999999999998863211 3456799999999999999999999999
Q ss_pred ecCCcccEEEEeecC
Q 026915 202 CCAKSVPIRIDVTGN 216 (231)
Q Consensus 202 l~g~~~~L~V~~ak~ 216 (231)
+.++ +|+|+|+..
T Consensus 84 f~GR--~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANR--VVVTKYCDP 96 (105)
T ss_dssp ETTE--ECEEEEECH
T ss_pred eCCC--EEEEEEeCH
Confidence 9977 999999853
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=4.7e-14 Score=127.98 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCEEEEcC--CCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec---C
Q 026915 130 DASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC---A 204 (231)
Q Consensus 130 ~~~~tLfVgn--Lp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~---g 204 (231)
.++++|||+| |++++||++|+++|++||.|.+|++...+ | ||||+|.+.++|++|++.|||..+. +
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC-----S----EEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3589999999 58899999999999999999998876432 3 9999999999999999999999974 2
Q ss_pred CcccEEEEeecC
Q 026915 205 KSVPIRIDVTGN 216 (231)
Q Consensus 205 ~~~~L~V~~ak~ 216 (231)
++.+|.|.|+..
T Consensus 87 ~~~~ly~~~~~~ 98 (345)
T 3tht_A 87 QKITLYLNFVEK 98 (345)
T ss_dssp CEEECEEEECSS
T ss_pred CceEEEEEEeec
Confidence 333688899853
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=4.6e-14 Score=112.70 Aligned_cols=75 Identities=16% Similarity=0.275 Sum_probs=66.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~f----G-------~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
+++|||+|||+++|+++|+++|++| | .|.++++...+ | ||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-----g----~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-----T----EEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-----C----EEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 77777776543 4 9999999999999999 89999
Q ss_pred eecCCcccEEEEeecCCC
Q 026915 201 SCCAKSVPIRIDVTGNLT 218 (231)
Q Consensus 201 ~l~g~~~~L~V~~ak~~~ 218 (231)
.+.++ .|+|++++...
T Consensus 74 ~~~g~--~i~v~~~~~~~ 89 (172)
T 2g4b_A 74 IFQGQ--SLKIRRPHDYQ 89 (172)
T ss_dssp EETTE--ECEEECCSSCC
T ss_pred EecCc--eeeecCCcccC
Confidence 99976 99999987643
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=9.5e-15 Score=110.64 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=63.6
Q ss_pred EEcCCCCCCCHHHHHHhh------------cCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec
Q 026915 136 FVEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC 203 (231)
Q Consensus 136 fVgnLp~~vte~eL~~lF------------~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~ 203 (231)
.+.|||+++++++|+++| ++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888888988887776 9999999999998753 567889999999999999999999999999
Q ss_pred CCcccEEEEee
Q 026915 204 AKSVPIRIDVT 214 (231)
Q Consensus 204 g~~~~L~V~~a 214 (231)
++ +|+|+|+
T Consensus 95 Gr--~i~v~~s 103 (104)
T 1jmt_A 95 GQ--PIHAELS 103 (104)
T ss_dssp TE--ECCEEEC
T ss_pred CE--EEEEEEc
Confidence 77 9999987
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=7.1e-14 Score=114.05 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=65.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~f----G-------~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
+++|||+|||+++|+++|+++|++| | .|.++++...+ | ||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~-----g----~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT-----T----EEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC-----C----EEEEEeCCHHHHHHHH-HhcCC
Confidence 6999999999999999999999999 5 56666654332 3 9999999999999999 89999
Q ss_pred eecCCcccEEEEeecCC
Q 026915 201 SCCAKSVPIRIDVTGNL 217 (231)
Q Consensus 201 ~l~g~~~~L~V~~ak~~ 217 (231)
.+.++ .|+|++++..
T Consensus 74 ~~~g~--~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQGQ--SLKIRRPHDY 88 (198)
T ss_dssp EETTE--EEEEECCCCC
T ss_pred EEcCc--eEEEeCCCCC
Confidence 99976 9999998764
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=5e-14 Score=122.52 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.++|||+|||+++++++|+++|++|| .|.+|+++.++. |.++|||||+|.+.++|++|+..|+|..+.++ .|+
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 190 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY--TLV 190 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEE
Confidence 69999999999999999999999999 999999998864 44556999999999999999999999999976 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|.|+.....
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999986543
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.5e-13 Score=106.59 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHhhcCCCCeEEEEEeeCCCC-CCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 131 ASSTLFVEGLPS--D---CSRREVAHIFRPFVGYKEVRLVSKESR-HPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 131 ~~~tLfVgnLp~--~---vte~eL~~lF~~fG~i~~v~l~~~k~~-~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
++++|+|.|+-. + --++||++.|++||.|.+|+|+.++.. ...++++||+||+|.+.++|++|++.|||..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 379999999942 2 236899999999999999999988621 1235677899999999999999999999999997
Q ss_pred CcccEEEEeecC
Q 026915 205 KSVPIRIDVTGN 216 (231)
Q Consensus 205 ~~~~L~V~~ak~ 216 (231)
+ .|+|+|+..
T Consensus 99 R--~i~v~~~~~ 108 (118)
T 3ue2_A 99 R--KVVAEVYDQ 108 (118)
T ss_dssp E--ECEEEEECH
T ss_pred c--EEEEEEcCh
Confidence 7 999999854
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-13 Score=102.23 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=61.1
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 132 ~~tLfVgnLp-------~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
.++|-|.... .++++++|+++|++||.|.+|+|+. +++|||||+|++.++|+.|++.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 4567666554 4689999999999999999999883 2334999999999999999998665 455
Q ss_pred CcccEEEEeecCCC
Q 026915 205 KSVPIRIDVTGNLT 218 (231)
Q Consensus 205 ~~~~L~V~~ak~~~ 218 (231)
+ +|+|+|++...
T Consensus 80 ~--~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 N--PLKISWLEGQP 91 (100)
T ss_dssp S--BCEEECSSCCC
T ss_pred C--eEEEEEccCCC
Confidence 4 89999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.6e-11 Score=94.57 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCCCC----------CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 026915 130 DASSTLFVEGLPSDC----------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (231)
Q Consensus 130 ~~~~tLfVgnLp~~v----------te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G 199 (231)
.+++.|.|.|+=..- -++||++.|++||.|.+|.|..+. ++||+||+|.+.++|++|++.|||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhCC
Confidence 347899999984432 245789999999999999987653 244999999999999999999999
Q ss_pred ceecCCcccEEEEeec
Q 026915 200 KSCCAKSVPIRIDVTG 215 (231)
Q Consensus 200 ~~l~g~~~~L~V~~ak 215 (231)
..+.++ .|+|+|+.
T Consensus 78 ~~f~GR--~i~v~~~~ 91 (114)
T 3s6e_A 78 RWFAGK--MITAAYVP 91 (114)
T ss_dssp CEETTE--ECEEEEEC
T ss_pred CEECCE--EEEEEEEc
Confidence 999987 99999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1e-10 Score=91.27 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=62.9
Q ss_pred CCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCC-HHHHHHHHHHhc--CceecCCcc
Q 026915 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS-PAHAATAMDALQ--VKSCCAKSV 207 (231)
Q Consensus 132 ~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~-~~~A~~Al~~L~--G~~l~g~~~ 207 (231)
++.|||+||+.+ +++++|+++|++||.|..|.++.+.. .|||+|.+ ..+|+.|+..|+ +..|.+.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~-- 86 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRNK-- 86 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS--
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeCc--
Confidence 799999999999 99999999999999999999988853 79999999 899999999995 5556664
Q ss_pred cEEEEee
Q 026915 208 PIRIDVT 214 (231)
Q Consensus 208 ~L~V~~a 214 (231)
.++++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 6666654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=86.06 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCEEEEcCCCC----CCCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec
Q 026915 132 SSTLFVEGLPS----DCSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC 203 (231)
Q Consensus 132 ~~tLfVgnLp~----~vte----~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~ 203 (231)
..||+|.-++. +.-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |||.++.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeC
Confidence 47888877662 3333 5788999999999999999983 8999999999999998 9999999
Q ss_pred CCcccEEEEeecCC
Q 026915 204 AKSVPIRIDVTGNL 217 (231)
Q Consensus 204 g~~~~L~V~~ak~~ 217 (231)
++ .|+|+++++.
T Consensus 75 Gr--~LkV~lkt~d 86 (91)
T 2dnr_A 75 NR--TITIALKSPS 86 (91)
T ss_dssp TE--EEEEEECCCS
T ss_pred Ce--EEEEEeCCCC
Confidence 87 9999998753
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.8e-09 Score=90.74 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEeec
Q 026915 144 CSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTG 215 (231)
Q Consensus 144 vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak 215 (231)
-.+++|++.|++||.|.+++|+.+. .....|+++|++||+|.+.++|++|++.|||..+.|+ .|+++|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr--~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR--KVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS--BCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe--EEEEEEcC
Confidence 4567899999999999999998765 2233467889999999999999999999999999987 99999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.2e-09 Score=80.07 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCEEEEcCCCCC-----CCH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 132 SSTLFVEGLPSD-----CSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 132 ~~tLfVgnLp~~-----vte----~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
..||+|.-++.+ .-. .+|.+.|++||.|..+|++.+ -+||+|.+.++|.+||+ |||.++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCCeee
Confidence 488999888743 222 468899999999999999998 39999999999999998 999999
Q ss_pred cCCcccEEEEee
Q 026915 203 CAKSVPIRIDVT 214 (231)
Q Consensus 203 ~g~~~~L~V~~a 214 (231)
.++ .|+|++.
T Consensus 83 ~Gr--~L~V~~k 92 (95)
T 1ufw_A 83 KGR--AVKISGP 92 (95)
T ss_dssp TTE--EEEEECC
T ss_pred CCe--EEEEecc
Confidence 987 9999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.2e-06 Score=66.82 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~f-----G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
+..++|-+=|||..+++..|+.+.+++ |.|+.|.|..+.. -|+|+|.+...|.+|.-+|+|++|.+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecC
Confidence 346889999999999999999999999 9999999999862 59999999999999999999999997
Q ss_pred CcccEEEEee
Q 026915 205 KSVPIRIDVT 214 (231)
Q Consensus 205 ~~~~L~V~~a 214 (231)
+ +|++.-.
T Consensus 90 r--~Lr~gTv 97 (117)
T 2l9w_A 90 K--VIRSGTI 97 (117)
T ss_dssp E--EEEEECH
T ss_pred e--EEEecCH
Confidence 6 8888643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=1e-05 Score=61.05 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=63.0
Q ss_pred CEEEEcCCCCCC-CH----HHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 133 STLFVEGLPSDC-SR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 133 ~tLfVgnLp~~v-te----~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
++|+|.||+.+| .. +.++++|..|+++......+.-. =..|.|.++++|.+|...||+..+.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~-- 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGK-- 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTE--
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCc--
Confidence 899999999875 32 46789999999988776665531 478999999999999999999999987
Q ss_pred cEEEEeecCCC
Q 026915 208 PIRIDVTGNLT 218 (231)
Q Consensus 208 ~L~V~~ak~~~ 218 (231)
.|+|-|++...
T Consensus 75 ~~r~YFgq~~~ 85 (104)
T 1wey_A 75 EMKLYFAQTLH 85 (104)
T ss_dssp ECEEECCCCSS
T ss_pred eeEEEecCCCC
Confidence 89999998543
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.06 E-value=2.7e-05 Score=58.16 Aligned_cols=56 Identities=16% Similarity=0.397 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
....++| +.|.+....||.++|++||.| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 3566777 999999999999999999976 58888885 79999999999999998774
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.70 E-value=0.00036 Score=51.41 Aligned_cols=81 Identities=12% Similarity=0.230 Sum_probs=63.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-c--cc
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-S--VP 208 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~--~~ 208 (231)
++|.|++||++.||+++.+.++....+.....+..+ +... ..-.-|+|.|.+.+++..-.+.++|+.+... + .+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~--~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYP--HMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTT--CCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 589999999999999999999999988777777766 2111 1223699999999999999999999996543 2 23
Q ss_pred EEEEeec
Q 026915 209 IRIDVTG 215 (231)
Q Consensus 209 L~V~~ak 215 (231)
..|+||-
T Consensus 80 a~VE~AP 86 (91)
T 1uw4_A 80 AIVEFAP 86 (91)
T ss_dssp CEEEECS
T ss_pred eEEEEcC
Confidence 4677774
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.00031 Score=52.52 Aligned_cols=54 Identities=17% Similarity=0.411 Sum_probs=47.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
..++| +.|.+....||.++|++||.| .|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999955 68888885 79999999999999999874
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.0021 Score=48.36 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcC----C-CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRP----F-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~----f-G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
.++|.|.|||.++.++.|+-.|++ - |.|.++..... -|+|+|.+.+.|++.|.. .-+.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-----------~AvItF~d~~va~rVL~k-~~H~L~~~- 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-----------GGVLTFREPADAERVLAQ-ADHELHGA- 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-----------EEEEEESSHHHHHHHHTC-SCCBSSSS-
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-----------cEEEEEcChHHHHHHhcC-CcceecCe-
Confidence 589999999999999999999988 2 45777765441 699999999999988753 24556654
Q ss_pred ccEEEE
Q 026915 207 VPIRID 212 (231)
Q Consensus 207 ~~L~V~ 212 (231)
+|.|.
T Consensus 75 -~LsV~ 79 (104)
T 2dhx_A 75 -QLSLR 79 (104)
T ss_dssp -BCEEE
T ss_pred -EEEEE
Confidence 66664
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.87 E-value=0.0031 Score=46.88 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=58.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-c--c
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-S--V 207 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~--~ 207 (231)
+-+|.|+.||+..||+++.+.+++.-.+.....+..+ +.. -..-.-|+|.|.+.++...-.+.++|+.+... + -
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~--~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLY--PHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSC--CSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCC--CCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 5789999999999999999998887665433333333 110 01112599999999999999999999995443 2 2
Q ss_pred cEEEEeec
Q 026915 208 PIRIDVTG 215 (231)
Q Consensus 208 ~L~V~~ak 215 (231)
+..|+||-
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 45678774
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.44 E-value=0.01 Score=45.60 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.+.|.|=+.|... -..|...|++||.|++....... . +-.|.|.++.+|++||. .||..|.+. -.|-|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~-----N----WihI~Y~s~~~A~rAL~-kNG~ii~g~-~mIGV 91 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG-----N----WMHIRYQSKLQARKALS-KDGRIFGES-IMIGV 91 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS-----S----EEEEEESSHHHHHHHHT-TTTCEETTT-EECEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC-----C----eEEEEeCCHHHHHHHHH-hCCeEecCC-EEEEE
Confidence 5788899999985 56777889999999988763221 2 99999999999999996 699998764 23455
Q ss_pred Eee
Q 026915 212 DVT 214 (231)
Q Consensus 212 ~~a 214 (231)
...
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.17 E-value=0.0048 Score=48.16 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=28.1
Q ss_pred EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 161 ~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
.++|+.+. .+++|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 246779999999999999999988864
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.81 E-value=0.0036 Score=58.61 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~ 195 (231)
.++|||. .|..+++.+|.+.|++||.|.++.+..++ | .|+.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHHh
Confidence 5899997 79999999999999999999999877665 2 299999999999886653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.93 E-value=0.011 Score=45.98 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=34.7
Q ss_pred CcceEEEEEeCCHHHHHHHHHHh-cCceecCCcccEEEEeecC
Q 026915 175 DPLILCFVDFVSPAHAATAMDAL-QVKSCCAKSVPIRIDVTGN 216 (231)
Q Consensus 175 ~~kg~aFVeF~~~~~A~~Al~~L-~G~~l~g~~~~L~V~~ak~ 216 (231)
..+|+++|+|.+.++|++|++.| ||..+.+ .|++.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccC
Confidence 45679999999999999999999 9999986 689998865
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.33 E-value=0.11 Score=48.99 Aligned_cols=55 Identities=16% Similarity=0.414 Sum_probs=47.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. +|||.|.+.+.|..++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4678887 88899999999999999964 67777664 89999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.46 E-value=0.44 Score=37.08 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEee---------CC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVS---------KE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~-v~l~~---------~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
...|.|=+.|.+.+ ..+-+.|++||.|.+ +.+.. .+ .+-+.=.-..+-.|+|+++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 35566778877755 456678999999876 21111 00 000000011288999999999999995 8999
Q ss_pred eecCCcccEEEEeec
Q 026915 201 SCCAKSVPIRIDVTG 215 (231)
Q Consensus 201 ~l~g~~~~L~V~~ak 215 (231)
.|.+. -|-|....
T Consensus 85 ii~G~--mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGV--LLGVIPYT 97 (132)
T ss_dssp EETTE--ECEEEECC
T ss_pred EeCcE--EEEEEECC
Confidence 98874 66666653
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.47 E-value=6.7 Score=26.48 Aligned_cols=68 Identities=7% Similarity=0.263 Sum_probs=42.1
Q ss_pred EEEEc-CCCCCCCHHHHHHhhcCCCCe-----EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 134 TLFVE-GLPSDCSRREVAHIFRPFVGY-----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 134 tLfVg-nLp~~vte~eL~~lF~~fG~i-----~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
+|||. +--..++..+|..++..-+.| -.|++..+ |.||+-.. +.|..+++.|++..+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g~-- 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKGK-- 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcCc--
Confidence 56663 223346677777766655543 45666444 89999865 467889999999999876
Q ss_pred cEEEEeec
Q 026915 208 PIRIDVTG 215 (231)
Q Consensus 208 ~L~V~~ak 215 (231)
.++|+.++
T Consensus 68 ~~~v~~~~ 75 (76)
T 2g0c_A 68 QLKVNKAN 75 (76)
T ss_dssp CCCEEECC
T ss_pred eEEEEECC
Confidence 78887654
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=70.53 E-value=0.88 Score=33.34 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCCcccCcccccccccccCCCCCCCcccccchhhhhccCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCC
Q 026915 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (231)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~~~~~--~~s~~~g~~~-r~~~Gg~~g~~~~~~~~~~~gg~~~~~ 109 (231)
.+..+++.--+++.|.. |-.|..++++. |+- .+++ |..|...+.+ .++. .|+|..+.++.+...-...
T Consensus 12 nLp~~~te~~L~~~F~~-~G~v~~v~i~~---d~~-~~kg~afV~f~~~~~A~~Ai~-~l~~~~~~g~~i~V~~a~~--- 82 (115)
T 4f25_A 12 NLDKSIDNKALYDTFSA-FGNILSCKVVC---DEN-GSKGYGFVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKS--- 82 (115)
T ss_dssp SCCTTCCHHHHHHHHGG-GSCEEEEEEEE---ETT-EEEEEEEEEESCHHHHHHHHH-HHTTCEETTEECEEEESSC---
T ss_pred CCCCCCCHHHHHHHHhc-cCCEEEEEEee---cCC-CCCceEEEEECCHHHHHHHHH-HcCCCEECCEEEEEEECCC---
Confidence 34555666666666643 55666667664 431 2333 5677765433 4554 6777666654332210000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHH
Q 026915 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRRE 148 (231)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~e 148 (231)
...+. ..........++|||+|||+++|++-
T Consensus 83 -~~~~~-------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 -RKERE-------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -CCC-----------------------------------
T ss_pred -ccccc-------cccccccCCCCceEeCCCCCCccccc
Confidence 00000 00001111357899999999999873
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.20 E-value=30 Score=27.80 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=39.5
Q ss_pred CEEEEcCCCCC---------CCHHHHHHhh--cCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHH-HHHHH
Q 026915 133 STLFVEGLPSD---------CSRREVAHIF--RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA-ATAMD 195 (231)
Q Consensus 133 ~tLfVgnLp~~---------vte~eL~~lF--~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A-~~Al~ 195 (231)
.++.|-|+|.. .+..+|++.| +.|..++ |+.+..+.+|++ ++.|+|.+--.. ..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g-----~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSG-----TAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEE-----EEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCce-----eEEEEecCChHHHHHHHH
Confidence 56777888872 3457899977 9999875 666666655543 999999985443 44443
No 225
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=31.75 E-value=6.4 Score=35.93 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHhhcCCCCeEEEE
Q 026915 149 VAHIFRPFVGYKEVR 163 (231)
Q Consensus 149 L~~lF~~fG~i~~v~ 163 (231)
|..||.+++.|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 678999999988773
No 226
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.01 E-value=18 Score=24.64 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=7.4
Q ss_pred EEEEEeCC
Q 026915 179 LCFVDFVS 186 (231)
Q Consensus 179 ~aFVeF~~ 186 (231)
.|||.|+|
T Consensus 39 ~ClV~FeD 46 (68)
T 2e5p_A 39 VCLVQFED 46 (68)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 89999987
No 227
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.23 E-value=1.3e+02 Score=22.54 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=21.7
Q ss_pred CCCeEEEEEeeCCCCCCCCCcceEEEEE-eCCHHHHHHHHHHhc
Q 026915 156 FVGYKEVRLVSKESRHPGGDPLILCFVD-FVSPAHAATAMDALQ 198 (231)
Q Consensus 156 fG~i~~v~l~~~k~~~~~G~~kg~aFVe-F~~~~~A~~Al~~L~ 198 (231)
+-.|.+|++..|-+. .-.||. |-+.++.+.++..|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 568999999988631 145666 545554444444444
No 228
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.51 E-value=29 Score=24.25 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=7.8
Q ss_pred EEEEEeCCH
Q 026915 179 LCFVDFVSP 187 (231)
Q Consensus 179 ~aFVeF~~~ 187 (231)
.|||.|+|.
T Consensus 56 ~ClV~F~D~ 64 (79)
T 2m0o_A 56 VCLVQFEDD 64 (79)
T ss_dssp EEEEEETTS
T ss_pred EEEEEEcCC
Confidence 899999873
No 229
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.29 E-value=1.5e+02 Score=18.69 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=43.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
.+|.|.++.-.--...|+..+.. ..|..+.+-... + -+.|+|.+.++..++|+.+ |+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-----~----~~~v~~~~~~~i~~~i~~~-Gy~~ 65 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-----A----VVAGNKEDVDKYIKAVEAA-GYQA 65 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-----E----EEEEEGGGHHHHHHHHHHT-TCEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-----C----EEEEEECCHHHHHHHHHHc-CCce
Confidence 57889999988788889999988 888888765543 1 5788888666666777643 5543
No 230
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.02 E-value=15 Score=24.61 Aligned_cols=8 Identities=38% Similarity=0.849 Sum_probs=7.3
Q ss_pred EEEEEeCC
Q 026915 179 LCFVDFVS 186 (231)
Q Consensus 179 ~aFVeF~~ 186 (231)
.|||.|++
T Consensus 37 ~ClV~FeD 44 (63)
T 2e5q_A 37 SCLVTFED 44 (63)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 89999987
Done!