Query 026916
Match_columns 231
No_of_seqs 183 out of 1066
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 14:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 1.5E-42 3.2E-47 299.6 13.2 132 100-231 1-146 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.3 2.7E-12 5.8E-17 121.0 6.6 55 89-143 2-64 (371)
3 smart00271 DnaJ DnaJ molecular 99.3 8.3E-12 1.8E-16 86.4 5.6 48 91-138 1-57 (60)
4 PF00226 DnaJ: DnaJ domain; I 99.2 1.6E-11 3.6E-16 86.5 6.0 52 92-143 1-61 (64)
5 PTZ00037 DnaJ_C chaperone prot 99.2 2.5E-11 5.3E-16 115.7 7.6 55 88-142 25-83 (421)
6 KOG0713 Molecular chaperone (D 99.2 1.5E-11 3.3E-16 114.5 5.9 54 89-142 14-75 (336)
7 PRK09430 djlA Dna-J like membr 99.2 1.8E-11 4E-16 110.2 5.8 54 87-140 196-264 (267)
8 cd06257 DnaJ DnaJ domain or J- 99.2 2.3E-11 4.9E-16 82.7 4.7 46 92-137 1-54 (55)
9 PRK14296 chaperone protein Dna 99.2 5.6E-11 1.2E-15 111.2 6.7 54 89-142 2-62 (372)
10 PTZ00100 DnaJ chaperone protei 99.1 5.9E-11 1.3E-15 96.3 5.4 51 87-137 61-115 (116)
11 PRK14288 chaperone protein Dna 99.1 6.8E-11 1.5E-15 110.4 6.6 53 90-142 2-62 (369)
12 PRK14299 chaperone protein Dna 99.1 1.1E-10 2.3E-15 105.7 6.8 53 90-142 3-62 (291)
13 PRK14276 chaperone protein Dna 99.1 1.1E-10 2.5E-15 109.2 6.7 54 90-143 3-63 (380)
14 PRK14287 chaperone protein Dna 99.1 1.3E-10 2.8E-15 108.7 6.7 54 89-142 2-62 (371)
15 PRK14286 chaperone protein Dna 99.1 1.5E-10 3.2E-15 108.3 6.9 54 89-142 2-63 (372)
16 PRK14282 chaperone protein Dna 99.1 1.4E-10 3E-15 108.2 6.7 55 89-143 2-65 (369)
17 PRK14279 chaperone protein Dna 99.1 1.4E-10 3.1E-15 109.1 6.6 53 90-142 8-68 (392)
18 PRK14283 chaperone protein Dna 99.1 1.7E-10 3.7E-15 107.8 6.6 54 89-142 3-63 (378)
19 PRK14280 chaperone protein Dna 99.1 1.9E-10 4.2E-15 107.5 6.8 55 89-143 2-63 (376)
20 PRK10767 chaperone protein Dna 99.1 2.3E-10 4.9E-15 106.5 6.6 54 89-142 2-63 (371)
21 PRK14295 chaperone protein Dna 99.1 2.4E-10 5.3E-15 107.5 6.5 52 90-141 8-67 (389)
22 PRK14294 chaperone protein Dna 99.0 3.3E-10 7.2E-15 105.5 7.0 56 89-144 2-65 (366)
23 PRK14277 chaperone protein Dna 99.0 3.8E-10 8.2E-15 105.9 6.8 53 90-142 4-64 (386)
24 PRK14285 chaperone protein Dna 99.0 3.1E-10 6.8E-15 105.9 6.1 53 90-142 2-62 (365)
25 PRK10266 curved DNA-binding pr 99.0 4.6E-10 1E-14 102.2 6.9 52 89-140 2-60 (306)
26 PRK14297 chaperone protein Dna 99.0 3.9E-10 8.4E-15 105.5 6.5 53 90-142 3-63 (380)
27 PRK14300 chaperone protein Dna 99.0 4.6E-10 9.9E-15 104.9 6.7 52 91-142 3-61 (372)
28 KOG0721 Molecular chaperone (D 99.0 4.2E-10 9.1E-15 100.1 5.6 51 88-138 96-154 (230)
29 PRK14301 chaperone protein Dna 99.0 5.9E-10 1.3E-14 104.3 6.8 53 90-142 3-63 (373)
30 PRK14278 chaperone protein Dna 99.0 5E-10 1.1E-14 105.0 6.2 52 91-142 3-61 (378)
31 PRK14298 chaperone protein Dna 99.0 5.9E-10 1.3E-14 104.5 6.6 53 90-142 4-63 (377)
32 PRK14291 chaperone protein Dna 99.0 6E-10 1.3E-14 104.4 6.5 53 90-142 2-61 (382)
33 PRK14281 chaperone protein Dna 99.0 7.5E-10 1.6E-14 104.4 6.5 52 91-142 3-62 (397)
34 PRK14289 chaperone protein Dna 99.0 1E-09 2.2E-14 102.9 6.8 54 90-143 4-65 (386)
35 PRK14284 chaperone protein Dna 99.0 9.4E-10 2E-14 103.4 6.4 52 91-142 1-60 (391)
36 TIGR02349 DnaJ_bact chaperone 98.9 1.2E-09 2.6E-14 100.9 6.3 51 92-142 1-58 (354)
37 PRK14290 chaperone protein Dna 98.9 1.3E-09 2.9E-14 101.5 6.1 52 91-142 3-63 (365)
38 PHA03102 Small T antigen; Revi 98.9 1.4E-09 3E-14 91.8 5.1 56 89-144 3-64 (153)
39 PRK14293 chaperone protein Dna 98.9 2.6E-09 5.6E-14 99.8 6.7 52 91-142 3-61 (374)
40 PRK14292 chaperone protein Dna 98.9 2.2E-09 4.7E-14 100.0 6.2 52 91-142 2-60 (371)
41 KOG0715 Molecular chaperone (D 98.9 3.2E-09 6.8E-14 97.0 6.4 52 88-139 40-98 (288)
42 KOG0712 Molecular chaperone (D 98.8 4.2E-09 9E-14 98.6 5.9 52 90-141 3-59 (337)
43 COG2214 CbpA DnaJ-class molecu 98.8 6.3E-09 1.4E-13 84.2 6.0 55 89-143 4-67 (237)
44 KOG0717 Molecular chaperone (D 98.6 5E-08 1.1E-12 94.6 4.9 54 89-142 6-68 (508)
45 KOG0719 Molecular chaperone (D 98.5 1.4E-07 3.1E-12 85.1 6.6 61 90-150 13-85 (264)
46 TIGR03835 termin_org_DnaJ term 98.5 1.2E-07 2.5E-12 96.8 6.3 53 91-143 2-61 (871)
47 PTZ00341 Ring-infected erythro 98.5 2E-07 4.4E-12 97.0 6.7 55 90-144 572-633 (1136)
48 PHA02624 large T antigen; Prov 98.5 1.4E-07 3E-12 94.5 4.6 59 87-145 7-71 (647)
49 KOG0691 Molecular chaperone (D 98.5 2.2E-07 4.7E-12 85.8 5.5 55 90-144 4-66 (296)
50 PRK05014 hscB co-chaperone Hsc 98.4 7.1E-07 1.5E-11 75.9 6.1 54 91-144 1-69 (171)
51 KOG0716 Molecular chaperone (D 98.4 4.2E-07 9E-12 83.2 4.8 48 90-137 30-85 (279)
52 KOG0718 Molecular chaperone (D 98.3 9.6E-07 2.1E-11 86.1 5.5 55 88-142 6-71 (546)
53 COG5407 SEC63 Preprotein trans 98.3 7.7E-07 1.7E-11 86.8 4.6 54 89-142 96-162 (610)
54 PRK01356 hscB co-chaperone Hsc 98.2 3E-06 6.4E-11 72.0 6.2 52 91-142 2-66 (166)
55 PRK00294 hscB co-chaperone Hsc 98.1 5.1E-06 1.1E-10 71.2 6.6 56 88-143 1-71 (173)
56 PRK03578 hscB co-chaperone Hsc 98.1 5.6E-06 1.2E-10 71.0 6.4 54 91-144 6-74 (176)
57 KOG0720 Molecular chaperone (D 98.0 5.8E-06 1.2E-10 80.4 3.8 71 68-138 211-289 (490)
58 KOG0722 Molecular chaperone (D 97.9 6.9E-06 1.5E-10 75.6 2.1 50 89-138 31-87 (329)
59 KOG0624 dsRNA-activated protei 97.8 2.8E-05 6.1E-10 74.6 4.8 52 89-140 392-454 (504)
60 KOG0568 Molecular chaperone (D 97.7 8.8E-05 1.9E-09 67.8 6.1 52 92-143 48-106 (342)
61 COG1076 DjlA DnaJ-domain-conta 97.6 3.9E-05 8.4E-10 65.0 3.2 46 91-136 113-173 (174)
62 KOG0714 Molecular chaperone (D 97.6 6.1E-05 1.3E-09 64.2 3.5 34 90-123 2-35 (306)
63 KOG0723 Molecular chaperone (D 97.4 0.00016 3.5E-09 58.6 4.1 54 86-139 51-108 (112)
64 KOG0550 Molecular chaperone (D 97.3 0.00022 4.7E-09 69.4 4.0 55 90-144 372-435 (486)
65 PRK01773 hscB co-chaperone Hsc 97.1 0.0015 3.2E-08 56.2 6.2 53 91-143 2-69 (173)
66 PF13446 RPT: A repeated domai 96.9 0.0015 3.3E-08 46.5 4.4 50 88-140 2-51 (62)
67 KOG1789 Endocytosis protein RM 96.9 0.0015 3.3E-08 69.8 5.9 60 82-141 1272-1340(2235)
68 KOG1150 Predicted molecular ch 96.9 0.0014 2.9E-08 58.9 4.5 55 90-144 52-115 (250)
69 TIGR00714 hscB Fe-S protein as 96.2 0.0085 1.8E-07 50.5 5.2 40 103-142 3-55 (157)
70 PF03656 Pam16: Pam16; InterP 94.5 0.039 8.4E-07 45.7 3.4 58 86-144 53-114 (127)
71 COG5269 ZUO1 Ribosome-associat 93.4 0.1 2.3E-06 49.0 4.4 60 87-147 39-111 (379)
72 PRK12482 flagellar motor prote 71.2 31 0.00068 32.1 9.0 55 104-162 50-108 (287)
73 PRK06926 flagellar motor prote 69.4 42 0.00092 31.0 9.4 49 104-156 57-106 (271)
74 COG5552 Uncharacterized conser 63.3 21 0.00045 27.9 5.1 42 95-136 7-52 (88)
75 TIGR03818 MotA1 flagellar moto 60.7 59 0.0013 30.1 8.6 52 104-159 50-105 (282)
76 PRK06743 flagellar motor prote 59.5 1.2E+02 0.0026 27.7 10.3 48 104-155 49-97 (254)
77 PF01102 Glycophorin_A: Glycop 57.1 18 0.00039 29.9 4.1 15 181-195 66-80 (122)
78 PF10041 DUF2277: Uncharacteri 56.9 22 0.00048 27.5 4.3 40 97-136 9-52 (78)
79 PRK09110 flagellar motor prote 50.9 98 0.0021 28.7 8.4 51 104-158 50-104 (283)
80 KOG0431 Auxilin-like protein a 47.1 18 0.00039 35.7 3.1 31 94-124 391-421 (453)
81 PLN00014 light-harvesting-like 38.4 1.2E+02 0.0027 28.0 6.8 65 130-195 111-181 (250)
82 COG4858 Uncharacterized membra 35.9 3.4E+02 0.0074 24.7 9.1 36 106-141 22-57 (226)
83 PTZ00352 60S ribosomal protein 35.8 56 0.0012 29.6 4.1 67 83-149 122-201 (212)
84 TIGR01337 apcB allophycocyanin 34.7 62 0.0013 27.8 4.1 80 56-138 79-160 (167)
85 PF13807 GNVR: G-rich domain o 32.7 1.5E+02 0.0031 21.9 5.4 64 127-195 14-77 (82)
86 PRK08124 flagellar motor prote 32.6 3.4E+02 0.0074 24.7 8.8 16 104-119 52-67 (263)
87 cd06572 Histidinol_dh Histidin 29.8 76 0.0017 31.0 4.3 39 102-148 36-74 (390)
88 PRK00907 hypothetical protein; 29.8 82 0.0018 24.7 3.8 27 92-122 18-44 (92)
89 PF11286 DUF3087: Protein of u 28.6 86 0.0019 27.3 4.0 37 192-228 37-79 (165)
90 COG0141 HisD Histidinol dehydr 28.1 1.2E+02 0.0025 30.2 5.3 38 103-148 61-98 (425)
91 KOG3767 Sideroflexin [General 26.5 54 0.0012 31.4 2.6 30 94-123 57-86 (328)
92 COG1076 DjlA DnaJ-domain-conta 26.4 92 0.002 26.3 3.8 40 105-144 17-69 (174)
93 PRK08456 flagellar motor prote 25.7 5E+02 0.011 23.5 9.9 18 104-121 52-69 (257)
94 PF11351 DUF3154: Protein of u 25.6 3.6E+02 0.0079 21.8 7.0 29 112-140 3-31 (123)
95 COG2962 RarD Predicted permeas 25.5 1.7E+02 0.0037 27.7 5.6 44 182-225 130-173 (293)
96 PF00815 Histidinol_dh: Histid 24.9 97 0.0021 30.5 4.1 38 102-147 49-86 (412)
97 cd03166 CD63_LEL Tetraspanin, 24.5 1.7E+02 0.0038 21.4 4.6 28 105-136 8-35 (99)
98 TIGR00069 hisD histidinol dehy 24.5 1.1E+02 0.0024 30.0 4.4 38 103-148 33-70 (393)
99 PF11431 Transport_MerF: Membr 24.4 2.6E+02 0.0056 19.7 5.2 18 206-223 28-45 (46)
100 CHL00089 apcF allophycocyanin 24.3 1.2E+02 0.0025 26.3 4.1 80 56-138 80-162 (169)
101 smart00150 SPEC Spectrin repea 24.2 2.3E+02 0.0049 19.8 5.0 10 127-136 80-89 (101)
102 COG2921 Uncharacterized conser 23.5 99 0.0022 24.6 3.2 41 92-136 16-80 (90)
103 KOG3442 Uncharacterized conser 23.3 59 0.0013 27.4 2.0 49 88-136 56-108 (132)
104 PRK00877 hisD bifunctional his 22.7 1.2E+02 0.0027 29.9 4.4 39 102-148 64-102 (425)
105 TIGR03759 conj_TIGR03759 integ 22.6 1.5E+02 0.0033 26.6 4.5 43 92-136 38-81 (200)
106 PRK12447 histidinol dehydrogen 22.2 1.3E+02 0.0029 29.8 4.5 39 102-148 57-95 (426)
107 COG3413 Predicted DNA binding 22.1 47 0.001 28.7 1.2 36 87-122 178-213 (215)
108 PRK13770 histidinol dehydrogen 21.6 1.4E+02 0.003 29.6 4.4 38 103-148 57-94 (416)
109 PF05546 She9_MDM33: She9 / Md 20.8 3.6E+02 0.0079 24.4 6.5 61 104-168 87-158 (207)
110 PRK07027 cobalamin biosynthesi 20.6 1.1E+02 0.0025 24.6 3.1 30 97-126 8-37 (126)
111 PF14159 CAAD: CAAD domains of 20.0 2.3E+02 0.005 21.9 4.6 15 207-221 54-68 (90)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=1.5e-42 Score=299.60 Aligned_cols=132 Identities=38% Similarity=0.599 Sum_probs=124.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCCcccccchhhhhh-----------hhhhhhhh
Q 026916 100 SREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQ-----------SRVMQAVM 168 (231)
Q Consensus 100 s~dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a~~-----------sp~~~wl~ 168 (231)
||||||||||+|||++++||.+|++..++||+|||+|||+||++||+|||+|++++||+|. .+.++|++
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999886 12255666
Q ss_pred hc---ccCCchHHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 026916 169 SR---FQTPSTKIIIKTSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKIRAFLYG 231 (231)
Q Consensus 169 ~~---~~~Ps~~~i~~~a~if~~L~~wtl~~p~~~~p~lqLAlsl~a~IYfL~~K~k~f~RA~l~g 231 (231)
+. |++|+.++|.+++++|++|++|+++++++++|+||||+|+++||||||||+++||||+++|
T Consensus 81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~ 146 (194)
T PF11833_consen 81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWT 146 (194)
T ss_pred hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 55 9999999999999999999999999999999999999999999999999999999999875
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.7e-12 Score=121.02 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=49.2
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
...|-|++|||+++||.||||+|||+|..+||||. +++++|+.|||+|...+-|+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46789999999999999999999999999999994 47899999999997766553
No 3
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.27 E-value=8.3e-12 Score=86.41 Aligned_cols=48 Identities=33% Similarity=0.421 Sum_probs=43.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIM 138 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm 138 (231)
.|||++|||+++++.+||++||++++.+||||. +.+.+|+.||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999996 356889999999854
No 4
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.24 E-value=1.6e-11 Score=86.47 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=45.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhhh
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
|||++|||+++++.+||++||++++.+||||. ..+..|+.||+.|....-|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 69999999999999999999999999999996 35688999999997665543
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.21 E-value=2.5e-11 Score=115.74 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHhh
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Ilm~rLr 142 (231)
+...|+|++|||+++||.+|||+|||+|..+||||. +++++|+.||++|.....|
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR 83 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKR 83 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHH
Confidence 467899999999999999999999999999999995 6889999999998766554
No 6
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-11 Score=114.47 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=49.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..+|+|++|||+.+||+.|||+|||+|..+||||+ +++.+|++||+++...-+|
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekR 75 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKR 75 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 47899999999999999999999999999999995 3789999999999877665
No 7
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.20 E-value=1.8e-11 Score=110.16 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=48.6
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------------hhHHHHHHHHHHHHhHH
Q 026916 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------------PSIDAIESAHDKIIMQK 140 (231)
Q Consensus 87 r~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------------~~~~~IEaAYD~Ilm~r 140 (231)
.++.+|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|..+|
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997 26788999999996543
No 8
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.20 E-value=2.3e-11 Score=82.70 Aligned_cols=46 Identities=35% Similarity=0.460 Sum_probs=42.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHHH
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHKP--------SIDAIESAHDKII 137 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~--------~~~~IEaAYD~Il 137 (231)
|||++|||+++++.+||+++|++|+++||||.. .+.+|+.||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999963 4588999999874
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=5.6e-11 Score=111.19 Aligned_cols=54 Identities=30% Similarity=0.398 Sum_probs=48.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|....-|
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence 35799999999999999999999999999999994 4778999999999877655
No 10
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.14 E-value=5.9e-11 Score=96.26 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=46.8
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHH
Q 026916 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKII 137 (231)
Q Consensus 87 r~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Il 137 (231)
.|+.+++|++|||+++||.+||+++|++|+.+||||. ..+++|++|||.|+
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999999995 46789999999985
No 11
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=6.8e-11 Score=110.44 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+|||+|||+|..+||||. +++++|+.|||+|....-|
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 4799999999999999999999999999999994 3678999999998765544
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=1.1e-10 Score=105.74 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=47.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence 5799999999999999999999999999999995 3678899999998776554
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.1e-10 Score=109.21 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=48.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 5799999999999999999999999999999994 47799999999998776553
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.3e-10 Score=108.66 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=48.0
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHH
Confidence 35699999999999999999999999999999994 3678999999998776554
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.5e-10 Score=108.26 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=47.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 35799999999999999999999999999999995 3678999999998766554
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.4e-10 Score=108.15 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=48.2
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.||++|.....|+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 35799999999999999999999999999999995 26688999999987765553
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.4e-10 Score=109.10 Aligned_cols=53 Identities=32% Similarity=0.384 Sum_probs=47.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+|||+|||+|+.+||||. +++++|+.|||+|..+.-|
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 5799999999999999999999999999999985 3668899999999876655
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.7e-10 Score=107.82 Aligned_cols=54 Identities=28% Similarity=0.344 Sum_probs=48.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
...|+|++|||+++||.+||++||++|..+||||. +++.+|+.|||.|.....|
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence 35799999999999999999999999999999995 4778999999988665554
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.9e-10 Score=107.51 Aligned_cols=55 Identities=29% Similarity=0.355 Sum_probs=48.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.||++|.....|+
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 34799999999999999999999999999999994 47789999999997666553
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.3e-10 Score=106.54 Aligned_cols=54 Identities=33% Similarity=0.413 Sum_probs=47.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhh
Confidence 35799999999999999999999999999999995 3567899999998766654
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.4e-10 Score=107.49 Aligned_cols=52 Identities=31% Similarity=0.417 Sum_probs=46.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKF 141 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rL 141 (231)
..|+|++|||+++||.+||++|||+|..+||||. +++++|+.|||+|....-
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 67 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhh
Confidence 5799999999999999999999999999999995 367899999999977643
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=3.3e-10 Score=105.52 Aligned_cols=56 Identities=30% Similarity=0.331 Sum_probs=49.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhhhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr~R 144 (231)
...|+|++|||+++||.+||++|||+|..+||||. +++++|+.|||+|.....|+.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45799999999999999999999999999999995 366889999999977666543
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.8e-10 Score=105.89 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=47.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 64 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 64 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4699999999999999999999999999999995 3678999999999776655
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.1e-10 Score=105.87 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=47.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|+.+||||. +++++|+.|||+|..+..|
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 62 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchh
Confidence 3699999999999999999999999999999996 3578999999998775544
No 25
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.03 E-value=4.6e-10 Score=102.17 Aligned_cols=52 Identities=17% Similarity=0.306 Sum_probs=46.2
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHH
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQK 140 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~r 140 (231)
...|+|++|||+++||.+||++||++|..+||||. +++++|+.||++|....
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 2 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred CcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 34799999999999999999999999999999993 36689999999986544
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=3.9e-10 Score=105.52 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=47.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence 4699999999999999999999999999999995 3568899999998776554
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.6e-10 Score=104.89 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=47.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++||++|.++||||. +++++|+.|||+|.....|
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r 61 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHh
Confidence 699999999999999999999999999999993 4678999999999776654
No 28
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-10 Score=100.07 Aligned_cols=51 Identities=35% Similarity=0.396 Sum_probs=46.0
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHh
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIM 138 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm 138 (231)
....||||+|||+|+||..|||+|||+|..+||||+ +..++|++||.++-.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD 154 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD 154 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc
Confidence 458899999999999999999999999999999997 256889999999844
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=5.9e-10 Score=104.31 Aligned_cols=53 Identities=30% Similarity=0.379 Sum_probs=47.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|....-|
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 5799999999999999999999999999999995 2678999999998765433
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=5e-10 Score=104.96 Aligned_cols=52 Identities=29% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 689999999999999999999999999999995 3678899999998665544
No 31
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=5.9e-10 Score=104.51 Aligned_cols=53 Identities=32% Similarity=0.369 Sum_probs=47.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||.|....-|
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR 63 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKR 63 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhh
Confidence 4699999999999999999999999999999995 3678999999998665544
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=6e-10 Score=104.41 Aligned_cols=53 Identities=30% Similarity=0.360 Sum_probs=47.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 3699999999999999999999999999999994 4678999999998776554
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=7.5e-10 Score=104.35 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=46.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 699999999999999999999999999999994 3568999999999766554
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=1e-09 Score=102.86 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=48.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
..|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5799999999999999999999999999999995 36789999999998775553
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=9.4e-10 Score=103.40 Aligned_cols=52 Identities=31% Similarity=0.337 Sum_probs=46.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+|||+||++|..+||||. +++++|+.||++|.....|
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 60 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHH
Confidence 389999999999999999999999999999995 3678999999999866443
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.94 E-value=1.2e-09 Score=100.93 Aligned_cols=51 Identities=33% Similarity=0.434 Sum_probs=45.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
|+|++|||+++||.+||++||++|..+||||. +++++|+.|||+|.....|
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 58 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence 78999999999999999999999999999996 3678999999988665543
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.3e-09 Score=101.48 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++|||+|..+||||. +++++|++||++|.....|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 699999999999999999999999999999995 3557899999999765544
No 38
>PHA03102 Small T antigen; Reviewed
Probab=98.91 E-value=1.4e-09 Score=91.76 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCCCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHhhhh
Q 026916 89 NVRDPYKRLGISREA--SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 89 ~~~dPY~vLGVs~dA--S~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Ilm~rLr~R 144 (231)
+.+..|++|||+++| |.+|||+||++++.+||||+ +++++|+.||+.|.....+.+
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 356689999999999 99999999999999999995 588999999999987777666
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.6e-09 Score=99.82 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=46.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++||++|..+||||. +++++|+.||++|..+..|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence 589999999999999999999999999999994 4678999999998776554
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.2e-09 Score=99.99 Aligned_cols=52 Identities=31% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr 142 (231)
.|+|++|||+++||.+||++||++|.++||||. +++++|+.||++|.....|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r 60 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKR 60 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhh
Confidence 489999999999999999999999999999994 3668899999998665443
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.2e-09 Score=96.96 Aligned_cols=52 Identities=33% Similarity=0.400 Sum_probs=46.3
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhH
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQ 139 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~ 139 (231)
+..+|||++|||+++|+..|||.||.+|.++||||. +++.+|..|||.|..+
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDE 98 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCH
Confidence 344599999999999999999999999999999995 4789999999998543
No 42
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.2e-09 Score=98.56 Aligned_cols=52 Identities=33% Similarity=0.351 Sum_probs=47.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHHHhHHh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----PSIDAIESAHDKIIMQKF 141 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-----~~~~~IEaAYD~Ilm~rL 141 (231)
...-|.+|||+++||.+|||+|||+|..+||||+ +++.+|..|||.+.....
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ek 59 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEK 59 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 4668999999999999999999999999999996 599999999999977433
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.3e-09 Score=84.20 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=49.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
...|+|++|||+++|+.+||++||+++..+||||. +++..|+.||+.+.....+.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 46789999999999999999999999999999994 46788999999997777664
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5e-08 Score=94.58 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr 142 (231)
.....|++|||..+|+.+||+.+||+|..|||||+ .+++.|++||++|...+-|
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 35679999999999999999999999999999997 3779999999999876654
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.4e-07 Score=85.12 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=51.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhHHhhh--hhCCCcc
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP----------SIDAIESAHDKIIMQKFYE--RRNPKID 150 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~----------~~~~IEaAYD~Ilm~rLr~--Rq~Gki~ 150 (231)
..|||++|||..+|+..||++||++|..+||||.. ++++++.||..+-.+.-|. =+.|.|.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34999999999999999999999999999999953 7799999999986554432 2678775
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.54 E-value=1.2e-07 Score=96.82 Aligned_cols=53 Identities=36% Similarity=0.466 Sum_probs=47.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhhh
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
.|+|++|||+++|+.+||++||++|.++||||. .++.+|+.||+.|.....|.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999996 25688999999997766554
No 47
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.49 E-value=2e-07 Score=97.04 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr~R 144 (231)
..|.|++|||+++||.+||++||++|..+||||. .++++|..||+.+.....|++
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~ 633 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKM 633 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4789999999999999999999999999999995 467999999999988887754
No 48
>PHA02624 large T antigen; Provisional
Probab=98.46 E-value=1.4e-07 Score=94.49 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=51.8
Q ss_pred CCCCCCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHhhhhh
Q 026916 87 RINVRDPYKRLGISREA--SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYERR 145 (231)
Q Consensus 87 r~~~~dPY~vLGVs~dA--S~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Ilm~rLr~Rq 145 (231)
+.+.++.|++|||+++| |++|||+||+++..+||||. +++++|+.||+.|...--+.|.
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45678999999999999 99999999999999999994 6889999999999765555664
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.2e-07 Score=85.82 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=50.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHhhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Ilm~rLr~R 144 (231)
..|+|.+|||+++|+..||++||+.+..+||||+ +++..+-.||+++....+|.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5689999999999999999999999999999996 377899999999999988765
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.37 E-value=7.1e-07 Score=75.93 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=44.9
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhhhh
Q 026916 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 91 ~dPY~vLGVs~d--AS~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr~R 144 (231)
.|+|++|||++. ++.++|+++|+++.++||||.- ....||.||+++...-.|.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 489999999996 7889999999999999999951 33679999999976555543
No 51
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.2e-07 Score=83.22 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=43.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHH
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK--------PSIDAIESAHDKII 137 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~--------~~~~~IEaAYD~Il 137 (231)
..|-|.+||+.++|+.||||+|||+|+++||||. +++.+||.||..+-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILs 85 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILS 85 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhc
Confidence 5679999999999999999999999999999984 38899999998763
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.6e-07 Score=86.13 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=48.3
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhHHhh
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-----------~~~~~IEaAYD~Ilm~rLr 142 (231)
.+..|-|..|+|++|||+|||++||+++.+-||||+ +.+..|..|||++...+-|
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kR 71 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKR 71 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 445689999999999999999999999999999994 3568899999999877654
No 53
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.27 E-value=7.7e-07 Score=86.77 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=46.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr 142 (231)
...||||+|||+.++|.+|||++||+|.-+||||+. +-.+|..||..+-.+.-|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 578999999999999999999999999999999962 447799999998655444
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.20 E-value=3e-06 Score=72.00 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCChh-----------hHHHHHHHHHHHHhHHhh
Q 026916 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-----------SIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 91 ~dPY~vLGVs~d--AS~eEIk~A~rrL~~qyh~D~~-----------~~~~IEaAYD~Ilm~rLr 142 (231)
.|.|++|||++. ++.++|+++|+++..+||||.- ....||.||+++...-.|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~R 66 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKR 66 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 589999999997 8899999999999999999952 236899999988655444
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.15 E-value=5.1e-06 Score=71.21 Aligned_cols=56 Identities=4% Similarity=0.019 Sum_probs=47.0
Q ss_pred CCCCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhhh
Q 026916 88 INVRDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 88 ~~~~dPY~vLGVs~d--AS~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr~ 143 (231)
|...|+|++||+++. .+.++|+++|++|.++||||.- ....||.||+++.....|.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 457899999999999 5679999999999999999952 3478999999997655444
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.13 E-value=5.6e-06 Score=71.00 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhhhh
Q 026916 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 91 ~dPY~vLGVs~d--AS~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr~R 144 (231)
.|+|++|||++. ++..+|+++|++|.++||||.- ....||.||+++...-.|..
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 799999999995 6789999999999999999951 13689999999966555543
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.8e-06 Score=80.43 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=54.1
Q ss_pred eeeecCCCCCCCC-CCCCCCCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 026916 68 CAMDASYGDMSDG-STAIFPRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIM 138 (231)
Q Consensus 68 ~~~~a~~G~~a~~-~~~~fpr~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm 138 (231)
|..+..+-..+.+ ....++..+..|||.+|||.+|.|+++||+.||++..--|||+ +..+.+..|||+|..
T Consensus 211 ~~~e~~va~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 211 CKKEIPVATNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred cccccccccchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc
Confidence 4444444332222 2344555679999999999999999999999999999999996 356889999999854
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.9e-06 Score=75.56 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIM 138 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm 138 (231)
..+|=|++|||+++|+..||.+||+.|.++||||. +.+..|-.||+.+..
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKD 87 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccc
Confidence 37889999999999999999999999999999994 245667777776643
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.77 E-value=2.8e-05 Score=74.55 Aligned_cols=52 Identities=33% Similarity=0.403 Sum_probs=44.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhHH
Q 026916 89 NVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK-----------PSIDAIESAHDKIIMQK 140 (231)
Q Consensus 89 ~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-----------~~~~~IEaAYD~Ilm~r 140 (231)
.-.|.|++|||.++||..||-+|||++..++|||. +++..|-+|-+++-...
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~E 454 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPE 454 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHH
Confidence 45789999999999999999999999999999992 25667999999885443
No 60
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=8.8e-05 Score=67.84 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=47.3
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHhhh
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHK-------PSIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~-------~~~~~IEaAYD~Ilm~rLr~ 143 (231)
.-|.+|||.++|+.+||+.||-.|+++||||. ..+.+|+.||.+++.+.+.+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999994 46789999999999998854
No 61
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.9e-05 Score=65.02 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=42.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh---------------hHHHHHHHHHHH
Q 026916 91 RDPYKRLGISREASEEEIQAARNFLVQKYAGHKP---------------SIDAIESAHDKI 136 (231)
Q Consensus 91 ~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~---------------~~~~IEaAYD~I 136 (231)
.|+|++|||.+.+++++|+++|+.++.++|||.. ++++|++||+.|
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999953 668899999876
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=6.1e-05 Score=64.19 Aligned_cols=34 Identities=50% Similarity=0.609 Sum_probs=32.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK 123 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~ 123 (231)
..|.|++|||.++|+.+||++||+++..+||||+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk 35 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDK 35 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999996
No 63
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00016 Score=58.60 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=48.9
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhH
Q 026916 86 PRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQ 139 (231)
Q Consensus 86 pr~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Ilm~ 139 (231)
|+|+...+-.+|||+|.++.+-||+|.||.+-..|||. --..+||+|+|.+...
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999996 3668899999998543
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00022 Score=69.38 Aligned_cols=55 Identities=31% Similarity=0.269 Sum_probs=46.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHhhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHK---------PSIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~---------~~~~~IEaAYD~Ilm~rLr~R 144 (231)
-.|-|++|||+.+||.+||++||+++.-.||||. .++.+|-.||..+-..--+.|
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 5689999999999999999999999999999995 266788899987754444444
No 65
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.05 E-value=0.0015 Score=56.17 Aligned_cols=53 Identities=6% Similarity=0.051 Sum_probs=44.9
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhhh
Q 026916 91 RDPYKRLGISRE--ASEEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYE 143 (231)
Q Consensus 91 ~dPY~vLGVs~d--AS~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr~ 143 (231)
.|+|++||+++. .+..++++.|+.|.+++|||.- ....||.||.++...-.|.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 589999999998 9999999999999999999941 3478999999986554443
No 66
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.93 E-value=0.0015 Score=46.46 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=41.3
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHH
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQK 140 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~r 140 (231)
|+.+++|+.|||+++.++|+|-.+|+..+.. |+........|...|-..|
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~---~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVND---DPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHHc---ChHhHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999999994 4456666777877776644
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0015 Score=69.79 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHHHhHHh
Q 026916 82 TAIFPRINVRDPYKRLGISRE----ASEEEIQAARNFLVQKYAGHK-----PSIDAIESAHDKIIMQKF 141 (231)
Q Consensus 82 ~~~fpr~~~~dPY~vLGVs~d----AS~eEIk~A~rrL~~qyh~D~-----~~~~~IEaAYD~Ilm~rL 141 (231)
+-.++.|+..++||+|.|+-+ ...+.|+++|.+|..+||||+ +++++||+|||-+-.+..
T Consensus 1272 ekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta 1340 (2235)
T KOG1789|consen 1272 EKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETA 1340 (2235)
T ss_pred hcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999998753 334789999999999999996 588999999999864443
No 68
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0014 Score=58.90 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=45.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh---------hHHHHHHHHHHHHhHHhhhh
Q 026916 90 VRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP---------SIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 90 ~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~---------~~~~IEaAYD~Ilm~rLr~R 144 (231)
--|||++|.|.|+.+.|+|++-|+.|----|||+. .+..|..||..+..+..+.|
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34799999999999999999999999998899852 44667888887777766655
No 69
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.23 E-value=0.0085 Score=50.47 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCh-------------hhHHHHHHHHHHHHhHHhh
Q 026916 103 ASEEEIQAARNFLVQKYAGHK-------------PSIDAIESAHDKIIMQKFY 142 (231)
Q Consensus 103 AS~eEIk~A~rrL~~qyh~D~-------------~~~~~IEaAYD~Ilm~rLr 142 (231)
-+.++|+++|++|.++||||. .....||.||+++...-.|
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~R 55 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMR 55 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhh
Confidence 467899999999999999994 2447899999999665444
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.50 E-value=0.039 Score=45.66 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh----hHHHHHHHHHHHHhHHhhhh
Q 026916 86 PRINVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP----SIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 86 pr~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~----~~~~IEaAYD~Ilm~rLr~R 144 (231)
.+|+.+...++|||++..+-|||++-|++|..-.+|++- --.+|..|.|.|.. .|+.+
T Consensus 53 ~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~-El~~~ 114 (127)
T PF03656_consen 53 KGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQ-ELKEE 114 (127)
T ss_dssp ----HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 368899999999999999999999999999999988742 34779999999854 44443
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.1 Score=49.01 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=47.7
Q ss_pred CCCCCCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhHHhhhhhCC
Q 026916 87 RINVRDPYKRLGISR---EASEEEIQAARNFLVQKYAGHKP----------SIDAIESAHDKIIMQKFYERRNP 147 (231)
Q Consensus 87 r~~~~dPY~vLGVs~---dAS~eEIk~A~rrL~~qyh~D~~----------~~~~IEaAYD~Ilm~rLr~Rq~G 147 (231)
.-.-.|.|.+||++. -|..+.|.+|.+..+-+||||.. -+.-|+.|||++- ++-+++|--
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~-D~~~R~qyD 111 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLG-DRKLRLQYD 111 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhc-cHHHHhhcc
Confidence 345589999999986 58889999999999999999964 4578999999984 444444443
No 72
>PRK12482 flagellar motor protein MotA; Provisional
Probab=71.23 E-value=31 Score=32.13 Aligned_cols=55 Identities=2% Similarity=-0.090 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHhCCChhh----HHHHHHHHHHHHhHHhhhhhCCCcccccchhhhhhhh
Q 026916 104 SEEEIQAARNFLVQKYAGHKPS----IDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSR 162 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D~~~----~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a~~sp 162 (231)
+.++++++.+.+..-+.+.+.. .+.|+.-||- .-+.|++|=..+.+++...+++|
T Consensus 50 p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~lv~l----s~~aRr~GllaLE~~i~~~~d~p 108 (287)
T PRK12482 50 PKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLLYEL----LEMVQEGGLKRLDQHIEIPEESS 108 (287)
T ss_pred CHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHH----HHHHHhcCHHHHHHhhcCcccCH
Confidence 6788999998888877654432 2445544444 33478888766666655555433
No 73
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=69.37 E-value=42 Score=30.97 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHhHHhhhhhCCCcccccchh
Q 026916 104 SEEEIQAARNFLVQKYAGHK-PSIDAIESAHDKIIMQKFYERRNPKIDIKKKVR 156 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D~-~~~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR 156 (231)
++.+++++.+.+..-+++.+ ...+.|+.-||- .-+.|++|-..+.+.+.
T Consensus 57 p~~~~~~~~k~l~~~f~~~~~~~~~~i~~l~~l----a~~aRk~GlLaLE~~~~ 106 (271)
T PRK06926 57 SPKDLKLAPRVLKQAFQSQEDDVEELVQTFVSL----SEKARREGLLSLEAELE 106 (271)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHHHhcCHHHHHhhhc
Confidence 57899999999988886643 233444444443 44588888665554443
No 74
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=63.28 E-value=21 Score=27.85 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhC----CChhhHHHHHHHHHHH
Q 026916 95 KRLGISREASEEEIQAARNFLVQKYA----GHKPSIDAIESAHDKI 136 (231)
Q Consensus 95 ~vLGVs~dAS~eEIk~A~rrL~~qyh----~D~~~~~~IEaAYD~I 136 (231)
+..|..|-|+.+||+.|-...+++.. |.+...++.|+|.+.|
T Consensus 7 ~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~i 52 (88)
T COG5552 7 ELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEI 52 (88)
T ss_pred HHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Confidence 56789999999999999877777654 5556667788888777
No 75
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=60.71 E-value=59 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHhhhhhCCCcccccchhhhh
Q 026916 104 SEEEIQAARNFLVQKYAGHK----PSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREVR 159 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D~----~~~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a~ 159 (231)
+.++++++.+.+..-+.+.+ ...+.|+.-||- .-..|++|-..+.+.+...+
T Consensus 50 p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l~~l----a~~aR~~GllaLE~~v~~~~ 105 (282)
T TIGR03818 50 PPKVLKETLKGLPKVFKGSKYGKADYLDLLSLLYEL----LRKARREGLMAIESHIENPE 105 (282)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHhcCHHHHHhhhcCcc
Confidence 67889999988888776542 223444444443 33478888665555444333
No 76
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=59.53 E-value=1.2e+02 Score=27.75 Aligned_cols=48 Identities=6% Similarity=-0.049 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHhHHhhhhhCCCcccccch
Q 026916 104 SEEEIQAARNFLVQKYAGHK-PSIDAIESAHDKIIMQKFYERRNPKIDIKKKV 155 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D~-~~~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~i 155 (231)
+..+++++.+.+..-+++.+ ...+-|+.-||- .-+.|++|-..+.+++
T Consensus 49 p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~~l----a~~aRr~GlLaLE~~~ 97 (254)
T PRK06743 49 RFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDF----SKKSKKHGLLSLEVDG 97 (254)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHHHhcCHHHHHhhc
Confidence 57899999988888776543 333445555554 3347888865544433
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.13 E-value=18 Score=29.89 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh
Q 026916 181 KTSVAFLVIGVLTVL 195 (231)
Q Consensus 181 ~~a~if~~L~~wtl~ 195 (231)
+.+++||+|++++..
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 467788888777554
No 78
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=56.94 E-value=22 Score=27.52 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=26.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCC----hhhHHHHHHHHHHH
Q 026916 97 LGISREASEEEIQAARNFLVQKYAGH----KPSIDAIESAHDKI 136 (231)
Q Consensus 97 LGVs~dAS~eEIk~A~rrL~~qyh~D----~~~~~~IEaAYD~I 136 (231)
-|..|-|++|||+.|-..-+++-.|- ..-.+..+.|-+.|
T Consensus 9 ~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~ev 52 (78)
T PF10041_consen 9 RNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEV 52 (78)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHH
Confidence 36778899999999977777776654 22334444444444
No 79
>PRK09110 flagellar motor protein MotA; Validated
Probab=50.89 E-value=98 Score=28.71 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHhCCC----hhhHHHHHHHHHHHHhHHhhhhhCCCcccccchhhh
Q 026916 104 SEEEIQAARNFLVQKYAGH----KPSIDAIESAHDKIIMQKFYERRNPKIDIKKKVREV 158 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D----~~~~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a 158 (231)
+..+|+.+.+.+..-+.+. +...+.|+.-||-- -..|++|-..+.+.+...
T Consensus 50 p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l~----~~aRk~GllaLE~~v~~~ 104 (283)
T PRK09110 50 PGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELL----RKARQEGMMALEAHIENP 104 (283)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHhcCHHHHHhhhcCc
Confidence 5789999999888877643 22345566655543 347888865555444433
No 80
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=47.09 E-value=18 Score=35.68 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=27.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCChh
Q 026916 94 YKRLGISREASEEEIQAARNFLVQKYAGHKP 124 (231)
Q Consensus 94 Y~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~ 124 (231)
++-.+++.-.+-+.||+||++-+.--|||+.
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccc
Confidence 5667788889999999999999999999974
No 81
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=38.36 E-value=1.2e+02 Score=28.04 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHhhhhhCCCcc--cccc---hhhhh-hhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHhh
Q 026916 130 ESAHDKIIMQKFYERRNPKID--IKKK---VREVR-QSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVL 195 (231)
Q Consensus 130 EaAYD~Ilm~rLr~Rq~Gki~--vs~~---iR~a~-~sp~~~wl~~~~~~Ps~~~i~~~a~if~~L~~wtl~ 195 (231)
+--||.++....++|+-=+-+ .+.+ +-|-. --||..|+. +|..|..+.+-=++++.|+++++.+-
T Consensus 111 ~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~-rf~l~~aE~lNGR~AMiGFvaal~~E 181 (250)
T PLN00014 111 KTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVK-RFHLPEAELLNGRAAMVGFFMAYLVD 181 (250)
T ss_pred CcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHH-hccCchhHhhhhHHHHHHHHHHHHHH
Confidence 345888888888777543211 0111 11111 137777777 88888877777778888877766654
No 82
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=35.89 E-value=3.4e+02 Score=24.71 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHh
Q 026916 106 EEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKF 141 (231)
Q Consensus 106 eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rL 141 (231)
|=|..+-+++...+..|++.-.-+|.+..+|+.++-
T Consensus 22 eyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQk 57 (226)
T COG4858 22 EYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQK 57 (226)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Confidence 334555666777766676666778888888887654
No 83
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=35.82 E-value=56 Score=29.61 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=42.0
Q ss_pred CCCCCCCCCCchhhcCCCCCCCHHHHHH--HHHHHHHHhCCCh-------h----hHHHHHHHHHHHHhHHhhhhhCCCc
Q 026916 83 AIFPRINVRDPYKRLGISREASEEEIQA--ARNFLVQKYAGHK-------P----SIDAIESAHDKIIMQKFYERRNPKI 149 (231)
Q Consensus 83 ~~fpr~~~~dPY~vLGVs~dAS~eEIk~--A~rrL~~qyh~D~-------~----~~~~IEaAYD~Ilm~rLr~Rq~Gki 149 (231)
-+||+-...--=-.-||..|+|.||++. |-..+...+-|=. . ..+.=-.||..|-++|...|..|.-
T Consensus 122 vlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~r 201 (212)
T PTZ00352 122 VLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKK 201 (212)
T ss_pred eeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhHH
Confidence 4577643322222358999999999998 5543321222211 0 2233458999999999999999853
No 84
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=34.73 E-value=62 Score=27.83 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=57.2
Q ss_pred ccccccccCcceeeeecCCCCCCCCCCCCCCC--CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 026916 56 QGCKKQRTYSIKCAMDASYGDMSDGSTAIFPR--INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKPSIDAIESAH 133 (231)
Q Consensus 56 ~~~~~~~~~~~~~~~~a~~G~~a~~~~~~fpr--~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAY 133 (231)
..|.+-..+-++|+. |+=-+.+..+.-.+ ....+=|+.|||+.++.-+-|+.-++.-.+...++.+..++++..+
T Consensus 79 ~aC~RD~~~~LR~it---YailaGd~~~L~~~~L~GlrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yF 155 (167)
T TIGR01337 79 AACLRDIDYYLRYAT---YAIIAGDNSILEERVLNGLKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPF 155 (167)
T ss_pred HHHHHHHHHHhhhhh---eeeecCCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHH
Confidence 347777767777776 43223334443333 2567889999999999999888888877777777666778899999
Q ss_pred HHHHh
Q 026916 134 DKIIM 138 (231)
Q Consensus 134 D~Ilm 138 (231)
|.++.
T Consensus 156 d~li~ 160 (167)
T TIGR01337 156 DYMCS 160 (167)
T ss_pred HHHHH
Confidence 98854
No 85
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=32.71 E-value=1.5e+02 Score=21.87 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHhhhhhCCCcccccchhhhhhhhhhhhhhhcccCCchHHHHHHHHHHHHHHHHHhh
Q 026916 127 DAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVMSRFQTPSTKIIIKTSVAFLVIGVLTVL 195 (231)
Q Consensus 127 ~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a~~sp~~~wl~~~~~~Ps~~~i~~~a~if~~L~~wtl~ 195 (231)
+.-++.|+.++...-..+..-..+ ..+++..|++- .|..-..|...-++.-++++|++.+..++
T Consensus 14 ~~~~~~Y~~Ll~r~~e~~~~~~~~-~~~~~ivd~A~----~P~~P~~P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 14 EIKRELYETLLQRYEEARLSKASN-VSNVRIVDPAI----VPDKPVSPKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCceeccccc----cCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344566777755444444332222 22455555431 12111346666666666666666655543
No 86
>PRK08124 flagellar motor protein MotA; Validated
Probab=32.56 E-value=3.4e+02 Score=24.70 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHh
Q 026916 104 SEEEIQAARNFLVQKY 119 (231)
Q Consensus 104 S~eEIk~A~rrL~~qy 119 (231)
+..+++++.+.+..-+
T Consensus 52 ~~~~~~~~~k~~~~~f 67 (263)
T PRK08124 52 PMSELKKVPKLFKVLF 67 (263)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4556666666666555
No 87
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=29.84 E-value=76 Score=31.01 Aligned_cols=39 Identities=41% Similarity=0.459 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 102 dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
-.|.+||++|++.+ |++..++|+.|++.| .++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999999766 777889999999998 5666666665
No 88
>PRK00907 hypothetical protein; Provisional
Probab=29.81 E-value=82 Score=24.68 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=22.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGH 122 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D 122 (231)
=||++.|... +++.++-...+++|.||
T Consensus 18 fpiKVmG~a~----~~l~~~V~~vv~~h~p~ 44 (92)
T PRK00907 18 FELSAMGTAE----RGLETELPRLLAATGVE 44 (92)
T ss_pred CeEEEEEcCc----hhHHHHHHHHHHHhCCC
Confidence 4899999866 67888888888898885
No 89
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.56 E-value=86 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHhhccCCCCChHH-----HHHHHHHHHHHHHH-hhhhhhhhh
Q 026916 192 LTVLFPTEEGPTLQ-----VAISLIATMYFIHE-RLKSKIRAF 228 (231)
Q Consensus 192 wtl~~p~~~~p~lq-----LAlsl~a~IYfL~~-K~k~f~RA~ 228 (231)
++.+++++++.-|- +.+|+..|+..+++ |.+-+.+.+
T Consensus 37 lI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~~p~m~Ev 79 (165)
T PF11286_consen 37 LIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKTHPFMTEV 79 (165)
T ss_pred HHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHccChHHHHH
Confidence 34455666665444 67778888777773 334444433
No 90
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=28.08 E-value=1.2e+02 Score=30.20 Aligned_cols=38 Identities=37% Similarity=0.435 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 103 AS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
.|.+||.+|++++ |++..++|+.|++.| +.+-++|+.+
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p~ 98 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLPK 98 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCCC
Confidence 6889999998865 667888899999998 6777777763
No 91
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=26.47 E-value=54 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=26.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCh
Q 026916 94 YKRLGISREASEEEIQAARNFLVQKYAGHK 123 (231)
Q Consensus 94 Y~vLGVs~dAS~eEIk~A~rrL~~qyh~D~ 123 (231)
|+.=.++|+-+.||+++|++..-..+|||.
T Consensus 57 yk~G~~~p~~t~~~lW~Akkl~dS~~HPDT 86 (328)
T KOG3767|consen 57 YKAGKVPPGLTDDELWKAKKLYDSTFHPDT 86 (328)
T ss_pred hccCCcCCCCcHHHHHHHHHHHhcccCCCC
Confidence 555577888899999999999999999994
No 92
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=92 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHhhhh
Q 026916 105 EEEIQAARNFLVQKYAGHKP-------------SIDAIESAHDKIIMQKFYER 144 (231)
Q Consensus 105 ~eEIk~A~rrL~~qyh~D~~-------------~~~~IEaAYD~Ilm~rLr~R 144 (231)
++..+.-|..+.+.||||.. ....++.||+.+...-++.-
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~ 69 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAE 69 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34556668888899999852 45789999999977766543
No 93
>PRK08456 flagellar motor protein MotA; Validated
Probab=25.72 E-value=5e+02 Score=23.47 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 026916 104 SEEEIQAARNFLVQKYAG 121 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~ 121 (231)
+..+++++.+.+..-+++
T Consensus 52 ~~~~~~~~~~~~~~~f~~ 69 (257)
T PRK08456 52 HKKYVKAAYKELKIVFKN 69 (257)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 456677776666655543
No 94
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.59 E-value=3.6e+02 Score=21.79 Aligned_cols=29 Identities=0% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhHH
Q 026916 112 RNFLVQKYAGHKPSIDAIESAHDKIIMQK 140 (231)
Q Consensus 112 ~rrL~~qyh~D~~~~~~IEaAYD~Ilm~r 140 (231)
-..++.+.+||++...+.+.+....-+++
T Consensus 3 v~~~~d~~~~~~e~~~~~~~~l~~~~~~~ 31 (123)
T PF11351_consen 3 VGETIDVFRPDPEERAQAKAELQQAALEQ 31 (123)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 35677788888887766666666655554
No 95
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=25.47 E-value=1.7e+02 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 026916 182 TSVAFLVIGVLTVLFPTEEGPTLQVAISLIATMYFIHERLKSKI 225 (231)
Q Consensus 182 ~a~if~~L~~wtl~~p~~~~p~lqLAlsl~a~IYfL~~K~k~f~ 225 (231)
-+.+.++.+|.....-...-|-..+++++...+|++.||.-+..
T Consensus 130 iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~ 173 (293)
T COG2962 130 IAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVD 173 (293)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35556666665555444445777788899999999999976543
No 96
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=24.91 E-value=97 Score=30.53 Aligned_cols=38 Identities=42% Similarity=0.461 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCC
Q 026916 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNP 147 (231)
Q Consensus 102 dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~G 147 (231)
.-|.+||++|+.++ |++..++|+.|++.| .++-++|+.
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~~ 86 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQLP 86 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT--
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 45889999999987 677889999999999 566666663
No 97
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=24.50 E-value=1.7e+02 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 026916 105 EEEIQAARNFLVQKYAGHKPSIDAIESAHDKI 136 (231)
Q Consensus 105 ~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~I 136 (231)
.++|++..+..+..|+.| ..+..++|.|
T Consensus 8 ~~~i~~~l~~~~~~y~~~----~~~~~~~d~i 35 (99)
T cd03166 8 MSEFNDSFNQMISNYNKT----NDFRKILDRM 35 (99)
T ss_pred HHHHHHHHHHHHHHcCCC----HHHHHHHHHH
Confidence 466777778888888865 2477888887
No 98
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=24.48 E-value=1.1e+02 Score=29.97 Aligned_cols=38 Identities=37% Similarity=0.460 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 103 AS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
.|.+||++||.++ |++..+.|+.|++.| +++-++|..+
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I--~~fh~~q~~~ 70 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENI--RAFHEAQLPR 70 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 5789999998764 677889999999998 5566666654
No 99
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=24.41 E-value=2.6e+02 Score=19.71 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 026916 206 VAISLIATMYFIHERLKS 223 (231)
Q Consensus 206 LAlsl~a~IYfL~~K~k~ 223 (231)
|++.++.++|-+.||.++
T Consensus 28 La~fi~lt~yal~r~~~~ 45 (46)
T PF11431_consen 28 LAVFIGLTIYALWRRRRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 777778899999888764
No 100
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=24.29 E-value=1.2e+02 Score=26.34 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=56.6
Q ss_pred ccccccccCcceeeeecCCCCCCCCCCCCCCC--CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHH
Q 026916 56 QGCKKQRTYSIKCAMDASYGDMSDGSTAIFPR--INVRDPYKRLGISREASEEEIQAARNFLVQKYAG-HKPSIDAIESA 132 (231)
Q Consensus 56 ~~~~~~~~~~~~~~~~a~~G~~a~~~~~~fpr--~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~-D~~~~~~IEaA 132 (231)
..|.+-..+-+||+.-+=. +++..+.-.+ ...+.=|..|||+..+.-+-|+.-+..-++...+ |.+..+.|+.-
T Consensus 80 ~aC~RD~~~~LR~itYalv---aGd~~~L~e~~L~GlrE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~y 156 (169)
T CHL00089 80 AACLRDIEYYLRYASYAIV---AGDTNILDERVLDGLKDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEP 156 (169)
T ss_pred HHHHHHHHhhhhheeeeee---cCCchHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4577777777888774322 2233333333 2566789999999999999999888888887774 44557889999
Q ss_pred HHHHHh
Q 026916 133 HDKIIM 138 (231)
Q Consensus 133 YD~Ilm 138 (231)
+|.++.
T Consensus 157 Fd~l~~ 162 (169)
T CHL00089 157 FQYMIK 162 (169)
T ss_pred HHHHHH
Confidence 998753
No 101
>smart00150 SPEC Spectrin repeats.
Probab=24.17 E-value=2.3e+02 Score=19.78 Aligned_cols=10 Identities=0% Similarity=0.398 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 026916 127 DAIESAHDKI 136 (231)
Q Consensus 127 ~~IEaAYD~I 136 (231)
..|+..|+.|
T Consensus 80 ~~l~~~w~~l 89 (101)
T smart00150 80 EELNERWEEL 89 (101)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 102
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=99 Score=24.58 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh------------------------hHHHHHHHHHHH
Q 026916 92 DPYKRLGISREASEEEIQAARNFLVQKYAGHKP------------------------SIDAIESAHDKI 136 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~------------------------~~~~IEaAYD~I 136 (231)
=||++.|....+=.|+| =+++++|.|+.- .++++|++|..|
T Consensus 16 F~~KVmG~a~~~l~~~v----v~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 16 FTYKVMGAAGPELEDQV----VEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred ceeeehcccchhHHHHH----HHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 38999998776555555 457788888742 568899999876
No 103
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=59 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCChh----hHHHHHHHHHHH
Q 026916 88 INVRDPYKRLGISREASEEEIQAARNFLVQKYAGHKP----SIDAIESAHDKI 136 (231)
Q Consensus 88 ~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D~~----~~~~IEaAYD~I 136 (231)
|..+..-.+|+|++.-+-|||.+-|..|.+-....+- --.+|=.|.|.|
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 7788899999999999999999999999986433211 124455555554
No 104
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=22.70 E-value=1.2e+02 Score=29.93 Aligned_cols=39 Identities=38% Similarity=0.509 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 102 dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
..|.+||++||..+ |++..++|+.|++.| +++-++|..+
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~~ 102 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKPE 102 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999998764 667889999999998 6676666654
No 105
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.61 E-value=1.5e+02 Score=26.63 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=28.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHH
Q 026916 92 DPYKRLGISREASEEEIQAARNFLV-QKYAGHKPSIDAIESAHDKI 136 (231)
Q Consensus 92 dPY~vLGVs~dAS~eEIk~A~rrL~-~qyh~D~~~~~~IEaAYD~I 136 (231)
||...|||....+ +=++-|-.|. ++.+-+-++.-+-+.|||+-
T Consensus 38 dPLtaLGIeArsd--~ERrryAEl~vk~E~~rvekeLA~qrayd~A 81 (200)
T TIGR03759 38 DPLTALGIEARSD--EERRRYAELWVKQEAQRVEKELAFQRAYDAA 81 (200)
T ss_pred ChhhhhccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976543 3355555554 34344555666788888875
No 106
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=22.22 E-value=1.3e+02 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 102 EASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 102 dAS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
.-|.+||++||+++ |++..+.|+.|++.| .++.++|..+
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~ 95 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQV--RRFAEAQRDS 95 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHH--HHHHHHhcCC
Confidence 35789999998764 667889999999998 5565665543
No 107
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=22.12 E-value=47 Score=28.65 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 026916 87 RINVRDPYKRLGISREASEEEIQAARNFLVQKYAGH 122 (231)
Q Consensus 87 r~~~~dPY~vLGVs~dAS~eEIk~A~rrL~~qyh~D 122 (231)
+.+.+|==+.||||+.+=.+-+++|-++++..|-++
T Consensus 178 ~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~~ 213 (215)
T COG3413 178 RVSLKDLAKELGISKSTLSEHLRRAERKLIEAYFDE 213 (215)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 367888889999999999999999999999987655
No 108
>PRK13770 histidinol dehydrogenase; Provisional
Probab=21.63 E-value=1.4e+02 Score=29.57 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHhhhhhCCC
Q 026916 103 ASEEEIQAARNFLVQKYAGHKPSIDAIESAHDKIIMQKFYERRNPK 148 (231)
Q Consensus 103 AS~eEIk~A~rrL~~qyh~D~~~~~~IEaAYD~Ilm~rLr~Rq~Gk 148 (231)
-|.+||++|+.++ |++..+.|+.|++.| .++.++|..+
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~ 94 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERI--KAYQESIKQT 94 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 5889999998875 667888999999998 5555555543
No 109
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.79 E-value=3.6e+02 Score=24.36 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHhCCChh-------h----HHHHHHHHHHHHhHHhhhhhCCCcccccchhhhhhhhhhhhhh
Q 026916 104 SEEEIQAARNFLVQKYAGHKP-------S----IDAIESAHDKIIMQKFYERRNPKIDIKKKVREVRQSRVMQAVM 168 (231)
Q Consensus 104 S~eEIk~A~rrL~~qyh~D~~-------~----~~~IEaAYD~Ilm~rLr~Rq~Gki~vs~~iR~a~~sp~~~wl~ 168 (231)
|..++.+ +-.|.+.-|..+. . -..++++.+.++..=|.+..+-.| .|.+||-+ +.|..|+.
T Consensus 87 s~~DleR-FT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQi-WSDKIRr~--STwgT~~l 158 (207)
T PF05546_consen 87 SPADLER-FTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQI-WSDKIRRA--STWGTWGL 158 (207)
T ss_pred ChHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhH--HHHHHHHH
Confidence 4444444 5556555454432 1 134555566655544555555555 56666554 44555544
No 110
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=20.56 E-value=1.1e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCChhhH
Q 026916 97 LGISREASEEEIQAARNFLVQKYAGHKPSI 126 (231)
Q Consensus 97 LGVs~dAS~eEIk~A~rrL~~qyh~D~~~~ 126 (231)
.|-.++++.|+|.++.+..+++++-+...+
T Consensus 8 IGcr~~~~~e~i~~ai~~~L~~~~l~~~si 37 (126)
T PRK07027 8 IGCRRGVPAEQIEAAIRAALAQRPLASADV 37 (126)
T ss_pred eccCCCCCHHHHHHHHHHHHHHcCCCHHHh
Confidence 466789999999999999999977665543
No 111
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=20.03 E-value=2.3e+02 Score=21.92 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q 026916 207 AISLIATMYFIHERL 221 (231)
Q Consensus 207 Alsl~a~IYfL~~K~ 221 (231)
.+|++.+.||..|.+
T Consensus 54 lvGlgyt~wF~~ryL 68 (90)
T PF14159_consen 54 LVGLGYTGWFVYRYL 68 (90)
T ss_pred HHHHHHHhHHHHHHH
Confidence 459999999998854
Done!