BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026918
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKR|A Chain A, Moac Protein From E. Coli
Length = 161
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 96/152 (63%)
Query: 76 LTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGI 135
LTHI GEA MVDVS K + R A A V + + +++ + KGDV + A+IAGI
Sbjct: 4 LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63
Query: 136 SGAKHTSSLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAG 195
AK T LIPLCH + L+ V V+L + V IE +GKTGVEMEA+TA +VA
Sbjct: 64 QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 123
Query: 196 LTVYDMCKAASKDIQITDVRLDRKTGGKSGDW 227
LT+YDMCKA KD+ I VRL K+GGKSGD+
Sbjct: 124 LTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDF 155
>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
Length = 161
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 95/152 (62%)
Query: 76 LTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGI 135
LTHI GEA MVDVS K + R A A V + + +++ + KGDV + A+IAGI
Sbjct: 4 LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63
Query: 136 SGAKHTSSLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAG 195
AK T LIPLCH + L+ V V+L + V IE +GKTGVEMEA+TA +VA
Sbjct: 64 QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 123
Query: 196 LTVYDMCKAASKDIQITDVRLDRKTGGKSGDW 227
LT+Y MCKA KD+ I VRL K+GGKSGD+
Sbjct: 124 LTIYAMCKAVQKDMVIGPVRLLAKSGGKSGDF 155
>pdb|2IDE|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IDE|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|2IIH|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
Form)
pdb|3JQJ|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQJ|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8
pdb|3JQK|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
Form)
pdb|3JQM|A Chain A, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|B Chain B, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|C Chain C, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|D Chain D, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|E Chain E, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|F Chain F, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|G Chain G, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|H Chain H, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
pdb|3JQM|I Chain I, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
Protein Moac From Thermus Theromophilus Hb8
Length = 157
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 76 LTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGI 135
LTH + G +MVDV+ K + RTA A V L ++ + + KGD L VA++AGI
Sbjct: 3 LTHF-QDGRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGI 61
Query: 136 SGAKHTSSLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAG 195
AK T+ LIPLCH + LT V V + L + V IE + +TGVEMEAMTA VA
Sbjct: 62 LAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACAVAA 121
Query: 196 LTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCREK 231
LTVYDM KAASK + I+ VRL K GGKSG+W RE+
Sbjct: 122 LTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRREQ 157
>pdb|2EEY|A Chain A, Structure Of Gk0241 Protein From Geobacillus Kaustophilus
Length = 162
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 76 LTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGI 135
TH G A+MVD++ KE++ R A+A V + +++++ + +N + KGDVL+VA++AG+
Sbjct: 4 FTHFNEQGRAKMVDITHKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVAGV 63
Query: 136 SGAKHTSSLIPLCHNITLTHVRVDLML--NSKDFSVDIEGEAVSSGKTGVEMEAMTAVTV 193
AK T+ LIP+CH + L V + + + + I + G TGVEMEA+TA +V
Sbjct: 64 MAAKKTADLIPMCHPLMLKGVDIAFAWENDGEAHKLVITATVKTKGSTGVEMEALTAASV 123
Query: 194 AGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230
LTVYDMCKA K + I L KTGGKSG + R+
Sbjct: 124 CALTVYDMCKALDKGMVIGPTYLVEKTGGKSGHYRRK 160
>pdb|2EKN|A Chain A, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
pdb|2EKN|B Chain B, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
pdb|2EKN|C Chain C, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
Length = 159
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAG 134
GLTH+ G +MV++ K+ R A+A ++ L + L+ ++ KG+VL+ A+IAG
Sbjct: 4 GLTHVDEKG-VKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIAG 62
Query: 135 ISGAKHTSSLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVA 194
I K T LIPLCH I +T VD+ + + +++ E + KTGVEMEA+T VTVA
Sbjct: 63 ILAVKRTPELIPLCHPIPITG--VDITFDFGEDYIEVTCEVRAYYKTGVEMEALTGVTVA 120
Query: 195 GLTVYDMCKAASKD 208
L ++DM KA KD
Sbjct: 121 LLAIWDMVKAVEKD 134
>pdb|2OHD|A Chain A, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|B Chain B, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|C Chain C, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|D Chain D, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|E Chain E, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
pdb|2OHD|F Chain F, Crystal Structure Of Hypothetical Molybdenum Cofactor
Biosynthesis Protein C From Sulfolobus Tokodaii
Length = 151
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 84 EAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSS 143
EA++VD+S K+ R A+ + L K+ + + ++ KGDV++VAK AGI AK T
Sbjct: 3 EAKIVDISSKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTPE 62
Query: 144 LIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCK 203
LIP+CH I L V V++ + + V + KTGVEMEA+TA +VA LT++DM K
Sbjct: 63 LIPMCHPIPLEFVDVEIKIEEEGLRVI--STVKAHYKTGVEMEALTATSVALLTIWDMVK 120
Query: 204 AASKD 208
KD
Sbjct: 121 KYEKD 125
>pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
pdb|3OP2|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
Length = 397
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 6 LAAAFPHSRRFFSSNSNHDFASAIVDLNKEMESIFGEPPTSNGFSGSVSNDFMAQEA 62
L AA PH F +++D + + + ++E+ +PP G + DF+A A
Sbjct: 318 LVAASPHPAXFEWDITHNDLXTRLASYDLKLENGLVQPPQGPGLGFEIDWDFVAAHA 374
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 6 LAAAFPHSRRFFSSNSNHDFASAIVDLNKEMESIFGEPPTSNGFSGSVSNDFMAQEA 62
L AA PH F +++D + + + ++E+ +PP G + DF+A A
Sbjct: 318 LVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFVAAHA 374
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 6 LAAAFPHSRRFFSSNSNHDFASAIVDLNKEMESIFGEPPTSNGFSGSVSNDFMAQEA 62
L AA PH F +++D + + + ++E+ +PP G + DF+A A
Sbjct: 318 LVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFVAAHA 374
>pdb|3H7N|A Chain A, Structure Of Nup120
pdb|3H7N|B Chain B, Structure Of Nup120
pdb|3H7N|C Chain C, Structure Of Nup120
pdb|3H7N|D Chain D, Structure Of Nup120
Length = 729
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 45 TSNGFSGSVSNDFMAQEAQLTSQKICDSTPGLTHIGRTGEAQMVDVSLKENSQRTAIANC 104
T NGF+ ++SND + + S+K D G T + D+ + I N
Sbjct: 512 TLNGFASTLSNDVL----RSISKKFLDIITGELPDSMTTVEKFTDIFKNCLENQFEITNL 567
Query: 105 KVILGK-KVFDL------VLANQLAKG-----DVLSVAKIAGISGAKHTSSLIPLCHNIT 152
K++ + FD+ ++ NQ+ G D +S K G + SL H +
Sbjct: 568 KILFDELNSFDIPVVLNDLINNQMKPGIFWKKDFISAIKFDGFTSIISLESL----HQLL 623
Query: 153 LTHVRVDL--MLNSKDFSVDIE--GEAVSS 178
H R+ L +L F +D E G+ +S+
Sbjct: 624 SIHYRITLQVLLTFVLFDLDTEIFGQHIST 653
>pdb|3F7F|A Chain A, Structure Of Nup120
pdb|3F7F|B Chain B, Structure Of Nup120
pdb|3F7F|C Chain C, Structure Of Nup120
pdb|3F7F|D Chain D, Structure Of Nup120
Length = 729
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 45 TSNGFSGSVSNDFMAQEAQLTSQKICDSTPGLTHIGRTGEAQMVDVSLKENSQRTAIANC 104
T NGF+ ++SND + + S+K D G T + D+ + I N
Sbjct: 512 TLNGFASTLSNDVL----RSISKKFLDIITGELPDSMTTVEKFTDIFKNCLENQFEITNL 567
Query: 105 KVILGK-KVFDL------VLANQLAKG-----DVLSVAKIAGISGAKHTSSLIPLCHNIT 152
K++ + FD+ ++ NQ+ G D +S K G + SL H +
Sbjct: 568 KILFDELNSFDIPVVLNDLINNQMKPGIFWKKDFISAIKFDGFTSIISLESL----HQLL 623
Query: 153 LTHVRVDL--MLNSKDFSVDIE--GEAVSS 178
H R+ L +L F +D E G+ +S+
Sbjct: 624 SIHYRITLQVLLTFVLFDLDTEIFGQHIST 653
>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
Length = 297
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 89 DVSLKENSQRTAIANCKVILGKKVFDLVLAN-QLAKGDVLSVAKIAGISGAK---HTSSL 144
+V+ E+ R ++ K ++G K +VL+ +L GD++S A +A + G TSS
Sbjct: 129 NVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSG 188
Query: 145 IPLCHNITLT 154
+ H T
Sbjct: 189 LGATHATMFT 198
>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
Length = 293
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 89 DVSLKENSQRTAIANCKVILGKKVFDLVLAN-QLAKGDVLSVAKIAGISGAK---HTSSL 144
+V+ E+ R ++ K ++G K +VL+ +L GD++S A +A + G TSS
Sbjct: 130 NVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSG 189
Query: 145 IPLCHNITLT 154
+ H T
Sbjct: 190 LGATHATMFT 199
>pdb|3HXR|A Chain A, Nucleoporin Nup120 From S.Cerevisiae (Aa 1-757)
Length = 761
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 45 TSNGFSGSVSNDFMAQEAQLTSQKICDSTPGLTHIGRTGEAQMVDVSLKENSQRTAIANC 104
T NGF+ ++SND + + S+K D G T + D+ + I N
Sbjct: 516 TLNGFASTLSNDVL----RSISKKFLDIITGELPDSXTTVEKFTDIFKNCLENQFEITNL 571
Query: 105 KVILGK-KVFDL------VLANQLAKG-----DVLSVAKIAGISGAKHTSSLIPLCHNIT 152
K++ + FD+ ++ NQ G D +S K G + SL H +
Sbjct: 572 KILFDELNSFDIPVVLNDLINNQXKPGIFWKKDFISAIKFDGFTSIISLESL----HQLL 627
Query: 153 LTHVRVDL--MLNSKDFSVDIE--GEAVSS 178
H R+ L +L F +D E G+ +S+
Sbjct: 628 SIHYRITLQVLLTFVLFDLDTEIFGQHIST 657
>pdb|1FDH|G Chain G, Structure Of Human Foetal Deoxyhaemoglobin
pdb|1FDH|H Chain H, Structure Of Human Foetal Deoxyhaemoglobin
Length = 147
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 LRRLAAAFPHSRRFFSSNSNHDFASAIV 30
L RL +P ++RFF S N ASAI+
Sbjct: 29 LGRLLVVYPWTQRFFDSFGNLSSASAIM 56
>pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3D|B Chain B, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3E|A Chain A, Human Azido-Met Hemoglobin Bart's (Gamma4)
pdb|1I3E|B Chain B, Human Azido-Met Hemoglobin Bart's (Gamma4)
Length = 146
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 LRRLAAAFPHSRRFFSSNSNHDFASAIV 30
L RL +P ++RFF S N ASAI+
Sbjct: 28 LGRLLVVYPWTQRFFDSFGNLSSASAIM 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,050,872
Number of Sequences: 62578
Number of extensions: 218549
Number of successful extensions: 526
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 22
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)