Query 026918
Match_columns 231
No_of_seqs 192 out of 1152
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 01:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ekr_A Molybdenum cofactor bio 100.0 8.1E-79 2.8E-83 511.7 17.1 156 75-230 3-158 (161)
2 2eey_A Molybdopterin biosynthe 100.0 2.4E-78 8.2E-83 509.3 18.9 156 75-230 3-160 (162)
3 2iih_A Molybdenum cofactor bio 100.0 4.4E-78 1.5E-82 505.6 18.1 155 75-230 2-156 (157)
4 2ekn_A Probable molybdenum cof 100.0 3.5E-74 1.2E-78 482.6 15.4 149 75-226 4-159 (159)
5 2ohd_A Probable molybdenum cof 100.0 1.1E-69 3.7E-74 452.3 16.1 139 85-225 4-149 (151)
6 2lqj_A Mg2+ transport protein; 56.5 11 0.00038 28.2 3.8 40 149-191 34-73 (94)
7 2vda_B Maltoporin; sugar trans 39.6 9.1 0.00031 23.3 0.8 15 125-139 11-25 (28)
8 3gva_A Alkyltransferase-like p 23.4 24 0.00083 27.6 0.9 26 110-137 8-33 (116)
9 1zav_U 50S ribosomal protein L 22.2 45 0.0015 20.4 1.8 13 29-41 18-30 (30)
10 1dd4_C 50S ribosomal protein L 21.2 59 0.002 21.1 2.3 17 29-45 18-34 (40)
11 2qsr_A Transcription-repair co 20.2 56 0.0019 26.7 2.5 19 27-45 44-62 (173)
12 2cqa_A RUVB-like 2; TIP48, TIP 20.2 24 0.00083 27.1 0.2 33 96-128 38-70 (95)
No 1
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=100.00 E-value=8.1e-79 Score=511.66 Aligned_cols=156 Identities=49% Similarity=0.709 Sum_probs=141.6
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcc
Q 026918 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLT 154 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt 154 (231)
.|||+|++|+++|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++|||||||||||||+||||||||||+
T Consensus 3 ~ltH~d~~G~a~MVDVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdVl~vAriAgImaAK~T~~LIPlCHpl~lt 82 (161)
T 1ekr_A 3 QLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLS 82 (161)
T ss_dssp --------CCCCCCCCSTTCCEEEEEEEEEEEECCHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHTHHHHSTTCCCCCCS
T ss_pred CCccCCCCCCEEEEEcCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhCcccCcCccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026918 155 HVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 155 ~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
+|+|+|+++++.++|+|+|+|+|.|+||||||||||||+||||||||||++||+|+|++|||++|+|||||+|.|+
T Consensus 83 ~v~v~~~~~~~~~~v~i~~~v~t~gkTGVEMEALtavsvA~LTiYDM~Kavdk~m~I~~irL~~K~GGKSG~~~~~ 158 (161)
T 1ekr_A 83 KVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVE 158 (161)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHGGGCSCCEEEEEEEEEEC---CCBCC--
T ss_pred eEEEEEEEcCCCCEEEEEEEEEEECCCcHHHHHHHHHHHHHHHHHHHHhccCCCcEEeeEEEEEEeCCcccceecC
Confidence 9999999987778999999999999999999999999999999999999999999999999999999999999875
No 2
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.4e-78 Score=509.30 Aligned_cols=156 Identities=42% Similarity=0.696 Sum_probs=153.1
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcc
Q 026918 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLT 154 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt 154 (231)
.|||||++|+++|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++|||||||||||||+||||||||||+
T Consensus 3 ~ltH~d~~G~a~MVDVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdVl~vAriAgImaAK~T~~LIPlCHpl~lt 82 (162)
T 2eey_A 3 SFTHFNEQGRAKMVDITHKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVAGVMAAKKTADLIPMCHPLMLK 82 (162)
T ss_dssp CCSSBCTTSSBCCCCCSSSCCEEEEEEEEEEEEECHHHHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHHHSTTCCCCCCC
T ss_pred CCCcCCCCCCEEEEEcCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhCcccCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCce--EEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026918 155 HVRVDLMLNSKDFS--VDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 155 ~v~V~~~~~~~~~~--v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
+|+|+|+++++.++ |+|+|+|+|.|+||||||||||||+||||||||||++||+|+|++|||++|+|||||+|.|+
T Consensus 83 ~v~v~~~~~~~~~~~~v~i~a~vkt~gkTGVEMEALtavsvA~LTiyDM~Kavdk~m~I~~irL~~K~GGKSG~~~~~ 160 (162)
T 2eey_A 83 GVDIAFAWENDGEAHKLVITATVKTKGSTGVEMEALTAASVCALTVYDMCKALDKGMVIGPTYLVEKTGGKSGHYRRK 160 (162)
T ss_dssp EEEEEEEEECSSSSEEEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHTTTCSCCEECCCEEEEEESSTTCCEECC
T ss_pred eEEEEEEEcCcCCceEEEEEEEEEEecCCChHHHHHHHHHHHHHHHHHHHhccCCCCEEeeEEEEEEeCCcCCceecC
Confidence 99999999877667 99999999999999999999999999999999999999999999999999999999999986
No 3
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=100.00 E-value=4.4e-78 Score=505.57 Aligned_cols=155 Identities=50% Similarity=0.680 Sum_probs=144.7
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcc
Q 026918 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLT 154 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt 154 (231)
.|||+| +|+++|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++|||||||||||||+||||||||||+
T Consensus 2 ~ltH~d-~g~a~MVDVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdVl~vAriAgImaAK~T~~LIPlCHpl~lt 80 (157)
T 2iih_A 2 DLTHFQ-DGRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPLPLT 80 (157)
T ss_dssp ---------CCCCCCCTTSCCEEEEEEEEEEEECCHHHHHHHTTTCSSSCCHHHHHHHHHHHHHHHHHHHSTTCCCCCCS
T ss_pred CCcccC-CCcEEEEEcCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhCcccCccccc
Confidence 599999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026918 155 HVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 155 ~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
+|+|+|+++++.++|+|+|+|+|.|+||||||||||||+||||||||||++||+|+|++|||++|+|||||+|.|+
T Consensus 81 ~v~v~~~~~~~~~~v~i~~~vkt~g~TGVEMEALtavsvA~LTiyDM~Kavdk~m~I~~irL~~K~GGKSG~~~~~ 156 (157)
T 2iih_A 81 GVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRRE 156 (157)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHTTTTTCTTCEEEEEEEEEEECSTTCCEEC-
T ss_pred eEEEEEEEcCCCCEEEEEEEEEEECCCcHHHHHHHHHHHHHHHHHHHHhccCCCcEEEeEEEEEEcCCcCCceecC
Confidence 9999999998888999999999999999999999999999999999999999999999999999999999999885
No 4
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.5e-74 Score=482.60 Aligned_cols=149 Identities=38% Similarity=0.586 Sum_probs=136.5
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcc
Q 026918 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLT 154 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt 154 (231)
.|||+|++| ++|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++|||||||||||||+||||||||||+
T Consensus 4 ~ltH~d~~g-a~MVDVs~K~~t~R~A~A~g~I~~~~~t~~~i~~g~~~KGdVl~vAriAgImaaK~T~~LIPlCHpl~lt 82 (159)
T 2ekn_A 4 GLTHVDEKG-VKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIAGILAVKRTPELIPLCHPIPIT 82 (159)
T ss_dssp --------C-BCCCCCTTSCCEEEEEEEEEEEECCHHHHHHHHHTCCTTCCHHHHHHHHHHHHHHHHHHHSTTCCCCCEE
T ss_pred CCCccCCCC-CEEEEcCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHhhhHHhhCcccCcccce
Confidence 699999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCc-------eEEeeEEEEEeeCCcccc
Q 026918 155 HVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKD-------IQITDVRLDRKTGGKSGD 226 (231)
Q Consensus 155 ~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~-------m~I~~IrL~~K~GGKSg~ 226 (231)
+|+|+|++++ ++|+|+|+|+|.++||||||||||||+||||||||||++||+ |+|++|||++|+|||||+
T Consensus 83 ~v~v~f~~~~--~~v~i~~~vkt~gkTGVEMEALtavsvA~LTiyDM~Kavdk~e~gqyp~m~I~~irl~~K~GGks~~ 159 (159)
T 2ekn_A 83 GVDITFDFGE--DYIEVTCEVRAYYKTGVEMEALTGVTVALLAIWDMVKAVEKDEKGQYPYTRIENVHVVEKVKTHNSQ 159 (159)
T ss_dssp EEEEEEEECS--SEEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSSCEEEEEEEEEEEEEC---
T ss_pred EEEEEEEECC--CEEEEEEEEEEECCCchHHHHHHHHHHHHHHHHHHhheecCCCCCCCCceEEEeEEEEEEeCCCCCC
Confidence 9999999975 689999999999999999999999999999999999999999 999999999999999974
No 5
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=100.00 E-value=1.1e-69 Score=452.28 Aligned_cols=139 Identities=38% Similarity=0.541 Sum_probs=133.5
Q ss_pred eeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEEEEEcC
Q 026918 85 AQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNS 164 (231)
Q Consensus 85 ~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~ 164 (231)
++|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++|||||||||||||+||||||||||++|+|+|++++
T Consensus 4 a~MVDVs~K~~t~R~A~A~g~I~~~~~t~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpl~lt~v~v~f~~~~ 83 (151)
T 2ohd_A 4 AKIVDISSKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTPELIPMCHPIPLEFVDVEIKIEE 83 (151)
T ss_dssp -CBCCCTTCCCEEEEEEEEEEEECCHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEEEET
T ss_pred CEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHhhhHhhhCcccCcCcccEEEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCc-------eEEeeEEEEEeeCCccc
Q 026918 165 KDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKD-------IQITDVRLDRKTGGKSG 225 (231)
Q Consensus 165 ~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~-------m~I~~IrL~~K~GGKSg 225 (231)
++|+|+|+|++.++||||||||||||+||||||||||++||+ |+|++|||++|+|||||
T Consensus 84 --~~v~i~~~vkt~gkTGVEMEALtavsvA~LTiyDM~Kavdk~e~gqyp~m~I~~i~l~~K~GGks~ 149 (151)
T 2ohd_A 84 --EGLRVISTVKAHYKTGVEMEALTATSVALLTIWDMVKKYEKDENGQYPYTEIKSIRVINKIKTYDD 149 (151)
T ss_dssp --TEEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTHHHHCCTTSCCSSCEEEEEEEEEECCC---
T ss_pred --CEEEEEEEEEEECCCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCceEEEeEEEEEEeCCCCC
Confidence 689999999999999999999999999999999999999999 99999999999999995
No 6
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=56.49 E-value=11 Score=28.20 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.0
Q ss_pred ccCCcceEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHH
Q 026918 149 HNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAV 191 (231)
Q Consensus 149 HpipLt~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtav 191 (231)
.++||.+++ .-.++ ++.++|+|++.+..+.+-|||++.+-
T Consensus 34 ~~~~l~~l~-s~~~~--~~~veI~A~L~at~~~~~~Le~iv~r 73 (94)
T 2lqj_A 34 NDITLRGIR-TGPAG--DDNITLTAHLLMVGHTPAKLERLVAE 73 (94)
T ss_dssp HTEEEEEEE-EEECS--SSCEEEEEEEEEESCCHHHHHHHHHH
T ss_pred CCCceeEee-eecCC--CCeEEEEEEEEecCCCHHHHHHHHHH
Confidence 467888888 44443 34699999999999999999998764
No 7
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=39.62 E-value=9.1 Score=23.29 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHhhhh
Q 026918 125 DVLSVAKIAGISGAK 139 (231)
Q Consensus 125 dVL~vAriAgI~aAK 139 (231)
=+|+||-+||||+|.
T Consensus 11 lplavav~agv~~aq 25 (28)
T 2vda_B 11 LPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CTHHHHHHHHTTCCC
T ss_pred CchHHHHHHHHhHhh
Confidence 368999999999875
No 8
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=23.39 E-value=24 Score=27.63 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHhh
Q 026918 110 KKVFDLVLANQLAKGDVLSVAKIAGISG 137 (231)
Q Consensus 110 ~~t~~~I~~~~~~KGdVL~vAriAgI~a 137 (231)
..++++|+ ++|.|.+.+-.+||...+
T Consensus 8 ~~Vw~~l~--~IP~G~v~TYg~IA~~~G 33 (116)
T 3gva_A 8 TKVYDAVC--EIPYGKVSTYGEIARYVG 33 (116)
T ss_dssp HHHHHHHT--TSCTTCBBCHHHHHHHTT
T ss_pred HHHHHHHh--cCCCCCeEeHHHHHHHhC
Confidence 45566665 689999988666665443
No 9
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.22 E-value=45 Score=20.40 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=11.4
Q ss_pred HHHHHHHhHhhhc
Q 026918 29 IVDLNKEMESIFG 41 (231)
Q Consensus 29 i~e~n~emes~Fg 41 (231)
+.||-|.||.-||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4688899999998
No 10
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.16 E-value=59 Score=21.10 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.8
Q ss_pred HHHHHHHhHhhhcCCCC
Q 026918 29 IVDLNKEMESIFGEPPT 45 (231)
Q Consensus 29 i~e~n~emes~Fge~p~ 45 (231)
..||.+.||+.||=++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 47999999999998865
No 11
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=20.25 E-value=56 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.9
Q ss_pred hHHHHHHHHhHhhhcCCCC
Q 026918 27 SAIVDLNKEMESIFGEPPT 45 (231)
Q Consensus 27 ~~i~e~n~emes~Fge~p~ 45 (231)
+.+.++-.||.-+||..|.
T Consensus 44 eel~~l~~EL~DRFG~lP~ 62 (173)
T 2qsr_A 44 VNYEELQEELIDRFGEYPD 62 (173)
T ss_dssp HHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHHCCCCcH
Confidence 6799999999999999998
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=20.16 E-value=24 Score=27.08 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=27.8
Q ss_pred ceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHH
Q 026918 96 SQRTAIANCKVILGKKVFDLVLANQLAKGDVLS 128 (231)
Q Consensus 96 t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~ 128 (231)
+.++.--+-.+.|.+..++.|....+..|||+.
T Consensus 38 tLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~ 70 (95)
T 2cqa_A 38 TLKTTEMETIYDLGTKMIESLTKDKVQAGDVIT 70 (95)
T ss_dssp EEECSSSEEEEEECSHHHHHHHHTTCCTTSEEE
T ss_pred EEEecCCcEEEeCCHHHHHHHHHcCceeCCEEE
Confidence 345555667889999999999999999999975
Done!