BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026920
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 92 QKYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHS 151
+KY RP + W+ C+ G EKF ++ L+ + A I S
Sbjct: 23 EKYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKS 80
Query: 152 WAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
A K K + + LS Q+FG+ + +Y + + DLV++
Sbjct: 81 LASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 121
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 93 KYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSW 152
KY RP + W+ C+ G EKF ++ L+ + A I S
Sbjct: 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKSL 58
Query: 153 APKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
A K K + + LS Q+FG+ + +Y + + DLV++
Sbjct: 59 ASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 98
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 98 DDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIH 150
D++Y R Q ++ IPRF + RG+ ++ D++ N A ++H
Sbjct: 141 DEVYSTIRKQEYNGKIPRF------RRIRGESELYTSDTVMQNPQFIKATIVH 187
>pdb|1XHX|A Chain A, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|B Chain B, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|C Chain C, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHX|D Chain D, Phi29 Dna Polymerase, Orthorhombic Crystal Form
pdb|1XHZ|A Chain A, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|B Chain B, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|C Chain C, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XHZ|D Chain D, Phi29 Dna Polymerase, Orthorhombic Crystal Form, Ssdna
Complex
pdb|1XI1|A Chain A, Phi29 Dna Polymerase Ssdna Complex, Monoclinic Crystal
Form
pdb|1XI1|B Chain B, Phi29 Dna Polymerase Ssdna Complex, Monoclinic Crystal
Form
pdb|2EX3|A Chain A, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|C Chain C, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|E Chain E, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|G Chain G, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|I Chain I, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2EX3|K Chain K, Bacteriophage Phi29 Dna Polymerase Bound To Terminal
Protein
pdb|2PY5|A Chain A, Phi29 Dna Polymerase Complexed With Single-stranded Dna
pdb|2PY5|B Chain B, Phi29 Dna Polymerase Complexed With Single-stranded Dna
pdb|2PYJ|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PYJ|B Chain B, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PYL|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
And Incoming Nucleotide Substrates (Ternary Complex)
pdb|2PZS|A Chain A, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|B Chain B, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|C Chain C, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
pdb|2PZS|D Chain D, Phi29 Dna Polymerase Complexed With Primer-Template Dna
(Post-Translocation Binary Complex)
Length = 575
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 61 GKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQK 93
G+ +F+GK+V+D YPL H + EF+ ++
Sbjct: 266 GEPIVFEGKYVWDEDYPL--HIQHIRCEFELKE 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,284,445
Number of Sequences: 62578
Number of extensions: 257681
Number of successful extensions: 591
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 4
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)