BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026921
         (231 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F79|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase Mutant
           (E375q) In Complex With Salicin 6-Phosphate
 pdb|4GPN|A Chain A, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
           Mutant) From Streptococcus Mutans Ua150 In Complex With
           Gentiobiose 6-Phosphate.
 pdb|4GPN|B Chain B, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
           Mutant) From Streptococcus Mutans Ua150 In Complex With
           Gentiobiose 6-Phosphate
          Length = 480

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 25/113 (22%)

Query: 21  VRNAFEGSSLVKVNCKGMHASDYK--KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMY 78
           V+N F   ++ +V   GM   DY+   LGA +KE++  V    D++ + +     W    
Sbjct: 377 VQNGF--GAIDQVEADGMVHDDYRIDYLGAHIKEMIKAV----DEDGVELMGYTPWGC-- 428

Query: 79  PEPPSFSNPVDLDIAGDADGSG------TPSDDPSQGTIRSSPKMISLWKRAI 125
                    +DL  AG  +            DD  +GT++ SPK+   W + +
Sbjct: 429 ---------IDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEV 472


>pdb|4F66|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
           Streptococcus Mutans Ua159 In Complex With
           Beta-D-Glucose-6-Phosphate.
 pdb|4F66|B Chain B, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
           Streptococcus Mutans Ua159 In Complex With
           Beta-D-Glucose-6-Phosphate
          Length = 480

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 25/113 (22%)

Query: 21  VRNAFEGSSLVKVNCKGMHASDYK--KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMY 78
           V N F   ++ +V   GM   DY+   LGA +KE++  V    D++ + +     W    
Sbjct: 377 VENGF--GAIDQVEADGMVHDDYRIDYLGAHIKEMIKAV----DEDGVELMGYTPWGC-- 428

Query: 79  PEPPSFSNPVDLDIAGDADGSG------TPSDDPSQGTIRSSPKMISLWKRAI 125
                    +DL  AG  +            DD  +GT++ SPK+   W + +
Sbjct: 429 ---------IDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEV 472


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 19/100 (19%)

Query: 8   AAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI- 66
            A  G  +  V + +  F    L  V+CK +  SD KK+ A LK  +  V     +E + 
Sbjct: 430 CASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVR 488

Query: 67  ------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 98
                 L W+G  K+W+++          + L +AG A G
Sbjct: 489 NCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 519


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,401,159
Number of Sequences: 62578
Number of extensions: 248127
Number of successful extensions: 413
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)