BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026921
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 166/227 (73%), Gaps = 11/227 (4%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
+KNGVY++LV+DVR+AFE SSLVKV+C G+ SDYKK+GAKLKELVPCVLLSFDDEQILM
Sbjct: 343 SKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILM 402
Query: 69 WRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPS---QGTIRSSPKMISLWKRAI 125
WRG++WKS + + P + + + + D S PS++ + T SSPKMISLW+RA+
Sbjct: 403 WRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRAL 462
Query: 126 ESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQS 185
ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS DGA+ + +D S+
Sbjct: 463 ESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSE- 521
Query: 186 ENYDEDEFYPEDDFNDDDEFYDSDSSDVV-PLGSLPVDHIAERLQRK 231
E+Y + D + DDE D +S D V P+GSLPVD I +L+ +
Sbjct: 522 ------EYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLRER 562
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 154/236 (65%), Gaps = 17/236 (7%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
AKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM
Sbjct: 374 AKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILM 433
Query: 69 WRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKR 123
RGK+WKS Y +P + V +L + + S SD +Q IR PKM LWK
Sbjct: 434 HRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKS 493
Query: 124 AIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY 179
A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++ D ++ S+ AEY
Sbjct: 494 AVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEY 553
Query: 180 ---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLPVDHIAERL 228
E + +E + D DD+ F D D VPLGSLP+D + ERL
Sbjct: 554 MNDEPETSVAGNEEGQLEQSPDLRDDEHF-DVDMFERLESSVPLGSLPIDSMIERL 608
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 19/238 (7%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
AKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM
Sbjct: 370 AKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILM 429
Query: 69 WRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKR 123
+RGK+WKS YP+P + + ++ ++ D S +DD + +R PKM LW
Sbjct: 430 FRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTN 489
Query: 124 AIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY 179
AIES+ AL+LD+ L PD LL +VE+F SQ EHS+PA++++ ++ + AEY
Sbjct: 490 AIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEY 549
Query: 180 -----EDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 229
E G+ Q + E EDD +DD +SS VPLG+LP+D + ++L
Sbjct: 550 TEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESS--VPLGALPIDAVVKQLN 605
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 60/73 (82%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
KNGVY LV++V+ AFE LV+++C+GM SD++K+GAKLK+LVPCVL+SF++EQIL+
Sbjct: 383 GKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILI 442
Query: 69 WRGKDWKSMYPEP 81
WRG++WKS P
Sbjct: 443 WRGREWKSSLTTP 455
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
KNGVYL LV+ VR AFE LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILM
Sbjct: 325 GKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILM 384
Query: 69 WRGKDWKSMYP 79
WRG DWKS P
Sbjct: 385 WRGNDWKSSLP 395
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
KNGVY LV VR AFE LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILM
Sbjct: 325 GKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILM 384
Query: 69 WRGKDWKSMYP 79
WRG DWKS P
Sbjct: 385 WRGSDWKSSLP 395
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 55/67 (82%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
AKNG Y +LV VR+AF S LV+++C G+ DYKK+GAKL++LVPC+L++FD EQ+++
Sbjct: 301 AKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVI 360
Query: 69 WRGKDWK 75
WRGKD+K
Sbjct: 361 WRGKDYK 367
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
AKNG Y +LV VR+AF LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++
Sbjct: 299 AKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIV 358
Query: 69 WRGKDW 74
WRGKD+
Sbjct: 359 WRGKDY 364
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/66 (18%), Positives = 36/66 (54%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
++G+ ++ D+ N ++ V+V C G+ D + + +L++ +++ Q+++
Sbjct: 181 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 240
Query: 69 WRGKDW 74
+RG+ +
Sbjct: 241 YRGRHY 246
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
+NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV L F DEQI++
Sbjct: 287 TRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIIL 346
Query: 69 WRGK 72
WRGK
Sbjct: 347 WRGK 350
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 9 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 68
+NGVY+ +V VR FE +V+++C + SD K++G KLKE+VPCV + F DEQI++
Sbjct: 285 TRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIIL 344
Query: 69 WRGK 72
WRGK
Sbjct: 345 WRGK 348
>sp|Q9SR02|MED14_ARATH Mediator of RNA polymerase II transcription subunit 14
OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
Length = 1703
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97 DGSGTPS--DDPSQGTIRSSPKMISLWKRAIESTKALVL-DEINLGPDDLLKKVEEF--- 150
DGSG P +DPS L + I+ + +L D++NL D++K V F
Sbjct: 558 DGSGKPQSFNDPSN----------ILRAKKIDIGQIRILEDDLNLITSDVVKFVSSFSDA 607
Query: 151 EGISQAAEHSYPALV---LSREDGASSSMAEYEDG 182
EGI+QA+ H P LV L+ G+ S + DG
Sbjct: 608 EGINQASGHRQPGLVDEALTEMSGSQLSFSSVVDG 642
>sp|Q42968|SSG1_ORYGL Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza glaberrima GN=WAXY PE=1 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 8 AAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI- 66
A G + V + + F L VNCK + SD KK+ A LK + V +E +
Sbjct: 503 CASTGGLVDTVIEGKTGFHMGRL-SVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVR 561
Query: 67 ------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 98
L W+G K+W+++ + L +AG A G
Sbjct: 562 NCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,709,332
Number of Sequences: 539616
Number of extensions: 4200403
Number of successful extensions: 20291
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 18954
Number of HSP's gapped (non-prelim): 1013
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)