Query 026921
Match_columns 231
No_of_seqs 43 out of 45
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 03:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 98.4 1.6E-07 5.3E-12 72.0 3.6 71 2-72 18-88 (98)
2 1rq8_A Conserved hypothetical 98.2 2.8E-06 9.5E-11 66.0 5.8 71 3-73 18-88 (104)
3 1wi9_A Protein C20ORF116 homol 48.3 13 0.00045 27.4 2.9 36 117-152 8-47 (72)
4 2pu9_C TRX-F, thioredoxin F-ty 39.0 84 0.0029 20.9 5.9 51 18-72 46-97 (111)
5 2fcg_F Cationic, antibacterial 38.5 7.8 0.00027 24.1 0.3 13 41-53 3-15 (26)
6 1at3_A Herpes simplex virus ty 35.8 25 0.00084 31.1 3.2 50 110-170 84-134 (247)
7 2vlu_A Thioredoxin, thioredoxi 33.9 1.1E+02 0.0037 20.6 5.8 52 18-73 56-107 (122)
8 2e0q_A Thioredoxin; electron t 32.6 95 0.0033 19.6 5.4 51 17-72 37-88 (104)
9 1faa_A Thioredoxin F; electron 32.2 1.2E+02 0.004 20.5 5.9 51 18-72 59-110 (124)
10 2fcw_A Alpha-2-macroglobulin r 29.3 29 0.00098 27.5 2.3 28 113-149 5-32 (109)
11 1vzv_A Assemblin, varicella-zo 28.6 29 0.001 30.1 2.4 49 110-170 65-115 (221)
12 2j01_J 50S ribosomal protein L 27.1 47 0.0016 26.4 3.2 37 16-52 8-46 (173)
13 1syr_A Thioredoxin; SGPP, stru 26.2 1.5E+02 0.0051 19.8 5.6 51 18-72 48-98 (112)
14 2vim_A Thioredoxin, TRX; thior 24.3 1.4E+02 0.0049 19.0 5.9 50 18-71 41-90 (104)
15 3m6z_A Topoisomerase V; helix- 24.1 22 0.00076 32.2 0.9 32 123-154 347-378 (380)
16 3qfa_C Thioredoxin; protein-pr 22.7 1.7E+02 0.0059 19.9 5.1 52 17-72 52-103 (116)
17 1vhf_A Periplasmic divalent ca 22.4 53 0.0018 25.4 2.6 40 30-72 5-46 (113)
18 1lyp_A CAP18; lipopolysacchari 22.2 18 0.00062 23.2 -0.1 16 40-55 14-29 (32)
19 3gsd_A Divalent-cation toleran 20.8 69 0.0024 25.1 3.0 42 30-73 23-66 (122)
20 2j23_A Thioredoxin; immune pro 20.7 1.9E+02 0.0063 19.8 5.0 50 19-72 56-107 (121)
21 2qxy_A Response regulator; reg 20.2 1.1E+02 0.0038 20.7 3.7 44 8-53 24-72 (142)
22 3hxs_A Thioredoxin, TRXP; elec 20.2 1.9E+02 0.0067 19.9 5.0 51 18-72 73-124 (141)
23 3idv_A Protein disulfide-isome 20.2 88 0.003 23.5 3.4 40 27-71 182-221 (241)
24 2dj1_A Protein disulfide-isome 20.1 1.9E+02 0.0064 19.9 4.9 48 19-71 57-108 (140)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=98.40 E-value=1.6e-07 Score=71.97 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=67.8
Q ss_pred chhhhhhccCceEeehhHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecC
Q 026921 2 LFFLHIAAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 2 l~~l~kL~kNGvY~~lV~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk 72 (231)
|=|+...||||+--+++..+++|++.+|||||-|.+-.+.|.+.+...|.+...|.++..-+..+++||+.
T Consensus 18 l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vLyR~~ 88 (98)
T 1jo0_A 18 LNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPS 88 (98)
T ss_dssp BCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEEECCC
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEccC
Confidence 34778899999999999999999999999999999999999999999999999999999999999999987
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=98.15 E-value=2.8e-06 Score=66.02 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=67.5
Q ss_pred hhhhhhccCceEeehhHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecCC
Q 026921 3 FFLHIAAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKD 73 (231)
Q Consensus 3 ~~l~kL~kNGvY~~lV~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk~ 73 (231)
=|+...||||+--++++.+.+|++.+|||||-|.+-.+.|-+.+...|.+-..|.++..-+..+++||+..
T Consensus 18 kpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR~~~ 88 (104)
T 1rq8_A 18 DPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRESK 88 (104)
T ss_dssp CCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEECCC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEeCCC
Confidence 36778899999999999999999999999999999899999999999999999999999999999999875
No 3
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=48.34 E-value=13 Score=27.43 Aligned_cols=36 Identities=14% Similarity=0.449 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcccceeccC----CCCchhHHHhhhhhhh
Q 026921 117 MISLWKRAIESTKALVLDEI----NLGPDDLLKKVEEFEG 152 (231)
Q Consensus 117 M~~LWk~AieSs~Al~Lde~----~L~PD~LL~~VEef~~ 152 (231)
.+.-|-+.|.+.|.+.|+++ +|.-.+...|+++++.
T Consensus 8 ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~ 47 (72)
T 1wi9_A 8 FLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLT 47 (72)
T ss_dssp HHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHH
Confidence 56778999999999999998 9999999999998864
No 4
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=39.03 E-value=84 Score=20.87 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=31.6
Q ss_pred hHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCce-EEEEecC
Q 026921 18 VRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ-ILMWRGK 72 (231)
Q Consensus 18 V~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eq-IlmWRGk 72 (231)
++.+...+..-.+++|||..-++.=.++.|.+ -+|.+++ |.+.+ +-.+.|.
T Consensus 46 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~---~~Pt~~~-~~~G~~~~~~~G~ 97 (111)
T 2pu9_C 46 YEKLAEEYLDVIFLKLDCNQENKTLAKELGIR---VVPTFKI-LKENSVVGEVTGA 97 (111)
T ss_dssp HHHHHHHCTTSEEEEEECSSTTHHHHHHHCCS---BSSEEEE-ESSSSEEEEEESS
T ss_pred HHHHHHHCCCeEEEEEecCcchHHHHHHcCCC---eeeEEEE-EeCCcEEEEEcCC
Confidence 45566667778899999985455555555542 4898554 54444 3345554
No 5
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=38.55 E-value=7.8 Score=24.12 Aligned_cols=13 Identities=15% Similarity=0.680 Sum_probs=11.2
Q ss_pred hhHHHhhhhhhcc
Q 026921 41 SDYKKLGAKLKEL 53 (231)
Q Consensus 41 sDyKKIGaKLrdL 53 (231)
.++||||.|+||+
T Consensus 3 ~~~kkIgQkIkdF 15 (26)
T 2fcg_F 3 KEFKRIVQRIKDF 15 (26)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999984
No 6
>1at3_A Herpes simplex virus type II protease; serine protease, viral protease, HSV2 protease; HET: DFP; 2.50A {Human herpesvirus 2} SCOP: b.57.1.1
Probab=35.83 E-value=25 Score=31.10 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=32.2
Q ss_pred ccccchhHHHHHHHHHhhcccceeccCCCCchhHHHhhhhhhhhhhhhhcc-cCeEEeecCC
Q 026921 110 TIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHS-YPALVLSRED 170 (231)
Q Consensus 110 ~~~~sPkM~~LWk~AieSs~Al~Lde~~L~PD~LL~~VEef~~~SqA~EHS-~pAl~~s~~~ 170 (231)
-..+||.++.+=++|-..|.+.-..- +|.|+. +++++ =|+ +|+|.+||--
T Consensus 84 G~I~s~~fl~il~~~a~~s~~~~~~~-~L~p~~---~ll~l-------l~~~LPsLSLSS~~ 134 (247)
T 1at3_A 84 GLIACVQLERVLETAASAAIFERRGP-ALSREE---RLLYL-------ITNYLPSVSLSTKR 134 (247)
T ss_dssp EEECCHHHHHHHHHHCCCCC--------CCSHH---HHHHH-------HHHHSCEEEEEEC-
T ss_pred EEeccHHHHHHHHHHhChHHHhhcCC-CCCCCc---chhHH-------hhcccccceeeccc
Confidence 35789999999999998887766543 677774 22222 266 6999999965
No 7
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=33.88 E-value=1.1e+02 Score=20.60 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=30.7
Q ss_pred hHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecCC
Q 026921 18 VRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKD 73 (231)
Q Consensus 18 V~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk~ 73 (231)
++.+...|..-.+++|||.. ++.-.++.|.+ -+|.+++.-+++.+-.+.|..
T Consensus 56 l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~---~~Pt~~~~~~G~~~~~~~G~~ 107 (122)
T 2vlu_A 56 FADLAKKFPNAVFLKVDVDE-LKPIAEQFSVE---AMPTFLFMKEGDVKDRVVGAI 107 (122)
T ss_dssp HHHHHHHCTTSEEEEEETTT-CHHHHHHTTCC---SSSEEEEEETTEEEEEEESSC
T ss_pred HHHHHHHCCCcEEEEEECCC-CHHHHHHcCCC---cccEEEEEeCCEEEEEEeCcC
Confidence 44555667668899999986 33344555542 489876543444333455543
No 8
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=32.58 E-value=95 Score=19.62 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=30.9
Q ss_pred hhHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceE-EEEecC
Q 026921 17 LVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI-LMWRGK 72 (231)
Q Consensus 17 lV~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqI-lmWRGk 72 (231)
.++.+...|..-.+++|||.. ++.-.++.|.+ -+|.+++- .+.++ -.+.|.
T Consensus 37 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~v~---~~Pt~~~~-~~g~~~~~~~g~ 88 (104)
T 2e0q_A 37 IIEELAEDYPQVGFGKLNSDE-NPDIAARYGVM---SLPTVIFF-KDGEPVDEIIGA 88 (104)
T ss_dssp HHHHHHHHCTTSEEEEEETTT-CHHHHHHTTCC---SSCEEEEE-ETTEEEEEEESC
T ss_pred HHHHHHHHcCCceEEEEECCC-CHHHHHhCCcc---ccCEEEEE-ECCeEhhhccCC
Confidence 345666677778899999975 23334444432 38988765 44444 345553
No 9
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=32.22 E-value=1.2e+02 Score=20.54 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=31.8
Q ss_pred hHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceE-EEEecC
Q 026921 18 VRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI-LMWRGK 72 (231)
Q Consensus 18 V~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqI-lmWRGk 72 (231)
++.+...+..-.+++|||..-++.=.++.|.+ -+|.+++ |.+.++ --+.|.
T Consensus 59 l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~---~~Pt~~~-~~~G~~~~~~~G~ 110 (124)
T 1faa_A 59 YEKLAEEYLDVIFLKLDCNQENKTLAKELGIR---VVPTFKI-LKENSVVGEVTGA 110 (124)
T ss_dssp HHHHHHHCTTSEEEEEECSSTTHHHHHHHCCS---SSSEEEE-EETTEEEEEEESS
T ss_pred HHHHHHHCCCCEEEEEecCcchHHHHHHcCCC---eeeEEEE-EeCCcEEEEEcCC
Confidence 45566667778899999985555555666643 4898554 444443 344554
No 10
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=29.32 E-value=29 Score=27.48 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHhhcccceeccCCCCchhHHHhhhh
Q 026921 113 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEE 149 (231)
Q Consensus 113 ~sPkM~~LWk~AieSs~Al~Lde~~L~PD~LL~~VEe 149 (231)
.-||...||+-|.++ |++||+|--.=||
T Consensus 5 ~EPkVq~LW~lA~~~---------NFT~~ELeSlK~E 32 (109)
T 2fcw_A 5 EEPRVIDLWDLAQSA---------NLTDKELEAFREE 32 (109)
T ss_dssp CSHHHHHHHHHHHTS---------CCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc---------CCCHHHHHHHHHH
Confidence 349999999999864 6999998543333
No 11
>1vzv_A Assemblin, varicella-zoster virus protease; hydrolase, serine protease, viral protease, varicella-zoster coat protein; 3.00A {Human herpesvirus 3} SCOP: b.57.1.1
Probab=28.60 E-value=29 Score=30.13 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHhhcccceeccCCCCchh-HHHhhhhhhhhhhhhhcc-cCeEEeecCC
Q 026921 110 TIRSSPKMISLWKRAIESTKALVLDEINLGPDD-LLKKVEEFEGISQAAEHS-YPALVLSRED 170 (231)
Q Consensus 110 ~~~~sPkM~~LWk~AieSs~Al~Lde~~L~PD~-LL~~VEef~~~SqA~EHS-~pAl~~s~~~ 170 (231)
-..+||.++.+=.+|-..|.+.-... +|.|+. ||.. =|+ +|+|.+||--
T Consensus 65 G~I~s~~fl~il~~~a~~s~~~~~~~-~L~p~~~ll~l-----------l~~~LPslSLSS~~ 115 (221)
T 1vzv_A 65 GIVRCPQLHAVLFEAAHSNFFGNRDS-VLSPLERALYL-----------VTNYLPSVSLSSKR 115 (221)
T ss_dssp EEECCHHHHHHHHHHSCTTSSCHHHH-TTCSSHHHHHH-----------HHHHSCEEEEECSC
T ss_pred EEeccHHHHHHHHHHhChHHHHhcCC-CCCCCchhHHH-----------hhcccccceeeccc
Confidence 35789999999999998887765543 688865 3432 256 6999999964
No 12
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=27.13 E-value=47 Score=26.39 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=33.9
Q ss_pred ehhHHHHHhhccCc--eEEEcCCCCCchhHHHhhhhhhc
Q 026921 16 TLVRDVRNAFEGSS--LVKVNCKGMHASDYKKLGAKLKE 52 (231)
Q Consensus 16 ~lV~~VrdAF~~~e--lVrIDC~gl~~sDyKKIGaKLrd 52 (231)
.+|..+++.|+.+. +|-+|++||+..+..++=.+||.
T Consensus 8 ~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 8 ELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999998 88889999999999999999987
No 13
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=26.21 E-value=1.5e+02 Score=19.79 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=29.6
Q ss_pred hHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecC
Q 026921 18 VRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 18 V~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk 72 (231)
++.+...+..-.+++|||.. ++.-.++.|. .-+|.+++.-++..+-.+.|.
T Consensus 48 l~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v---~~~Pt~~~~~~G~~~~~~~G~ 98 (112)
T 1syr_A 48 YEECSKTYTKMVFIKVDVDE-VSEVTEKENI---TSMPTFKVYKNGSSVDTLLGA 98 (112)
T ss_dssp HHHHHHHCTTSEEEEEETTT-THHHHHHTTC---CSSSEEEEEETTEEEEEEESC
T ss_pred HHHHHHHcCCCEEEEEECCC-CHHHHHHcCC---CcccEEEEEECCcEEEEEeCC
Confidence 45566667778899999975 2333444443 358986653233333334453
No 14
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=24.33 E-value=1.4e+02 Score=19.00 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=29.6
Q ss_pred hHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEec
Q 026921 18 VRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 71 (231)
Q Consensus 18 V~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRG 71 (231)
++.+...+..-.+++|||..- +.-.++.|. .-+|.+++.-++..+--+.|
T Consensus 41 l~~~~~~~~~~~~~~v~~~~~-~~~~~~~~v---~~~Pt~~~~~~g~~~~~~~G 90 (104)
T 2vim_A 41 VEALAKEIPEVEFAKVDVDQN-EEAAAKYSV---TAMPTFVFIKDGKEVDRFSG 90 (104)
T ss_dssp HHHHHHHCTTSEEEEEETTTC-HHHHHHTTC---CSSSEEEEEETTEEEEEEES
T ss_pred HHHHHHHCCCCEEEEEeccCC-HHHHHHcCC---ccccEEEEEeCCcEEEEEeC
Confidence 455666677788999999752 223344443 35898655434444444555
No 15
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=24.10 E-value=22 Score=32.24 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=25.7
Q ss_pred HHHhhcccceeccCCCCchhHHHhhhhhhhhh
Q 026921 123 RAIESTKALVLDEINLGPDDLLKKVEEFEGIS 154 (231)
Q Consensus 123 ~AieSs~Al~Lde~~L~PD~LL~~VEef~~~S 154 (231)
..++...|.++|+-||.||+-=+.+|.|+.|.
T Consensus 347 ksvnrtlatlidehglspdaadeliehfesia 378 (380)
T 3m6z_A 347 KSVNRTLATLIDEHGLSPDAADELIEHFESIA 378 (380)
T ss_dssp HHHCHHHHHHHHTTCCCHHHHHHHHHHHC---
T ss_pred HhhhHHHHHHHHhcCCCcchHHHHHHHHHhhc
Confidence 34667789999999999999999999998764
No 16
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=22.75 E-value=1.7e+02 Score=19.89 Aligned_cols=52 Identities=8% Similarity=0.173 Sum_probs=31.6
Q ss_pred hhHHHHHhhccCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecC
Q 026921 17 LVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 17 lV~~VrdAF~~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk 72 (231)
.++.+.+.|..-.+++|||.. ++.=.++.|.+ -+|.+++--+++.+-.+.|.
T Consensus 52 ~l~~l~~~~~~v~~~~vd~d~-~~~l~~~~~v~---~~Pt~~~~~~G~~~~~~~G~ 103 (116)
T 3qfa_C 52 FFHSLSEKYSNVIFLEVDVDD-CQDVASECEVK---SMPTFQFFKKGQKVGEFSGA 103 (116)
T ss_dssp HHHHHHTTCTTSEEEEEETTT-THHHHHHTTCC---SSSEEEEESSSSEEEEEESC
T ss_pred HHHHHHHHCCCCEEEEEECCC-CHHHHHHcCCc---cccEEEEEeCCeEEEEEcCC
Confidence 345566667778899999974 23334444432 38987765455555556664
No 17
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=22.38 E-value=53 Score=25.42 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=30.7
Q ss_pred eEEEcCCCCCchhHHHhhhhhh--cccCeeEEeecCceEEEEecC
Q 026921 30 LVKVNCKGMHASDYKKLGAKLK--ELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 30 lVrIDC~gl~~sDyKKIGaKLr--dLVpCvllsF~~eqIlmWRGk 72 (231)
+|-+.|. +...-++|+..|= .|+.||=|. .=+-+..|.|+
T Consensus 5 ~V~tT~p--~~e~A~~iA~~Lve~rLAACvni~-~i~S~Y~W~G~ 46 (113)
T 1vhf_A 5 LVYSTFP--NEEKALEIGRKLLEKRLIACFNAF-EIRSGYWWKGE 46 (113)
T ss_dssp EEEEEES--SHHHHHHHHHHHHHTTSCSEEEEE-EEEEEEEETTE
T ss_pred EEEEecC--CHHHHHHHHHHHHHCCeEEEEEEe-eeeEEEEECCE
Confidence 3444443 4566789999885 899999887 77889999996
No 18
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=22.16 E-value=18 Score=23.18 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.2
Q ss_pred chhHHHhhhhhhcccC
Q 026921 40 ASDYKKLGAKLKELVP 55 (231)
Q Consensus 40 ~sDyKKIGaKLrdLVp 55 (231)
++..||||.|+.-|.|
T Consensus 14 keklkkigqkiqgllp 29 (32)
T 1lyp_A 14 KEKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4678999999988776
No 19
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=20.81 E-value=69 Score=25.12 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=32.4
Q ss_pred eEEEcCCCCCchhHHHhhhhh--hcccCeeEEeecCceEEEEecCC
Q 026921 30 LVKVNCKGMHASDYKKLGAKL--KELVPCVLLSFDDEQILMWRGKD 73 (231)
Q Consensus 30 lVrIDC~gl~~sDyKKIGaKL--rdLVpCvllsF~~eqIlmWRGk~ 73 (231)
+|-+.|. +...-++|+..| ++|+.||=|.=.-+-+..|.|+-
T Consensus 23 lV~tT~p--~~e~A~~iA~~Lve~rLAACVni~p~i~S~Y~W~G~i 66 (122)
T 3gsd_A 23 VVLCTAP--DEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKL 66 (122)
T ss_dssp EEEEEES--SHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEEETTEE
T ss_pred EEEEecC--CHHHHHHHHHHHHHCCceEEEEecCCeeEEEEECCEE
Confidence 4555554 567889999998 78999997754568899999973
No 20
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=20.71 E-value=1.9e+02 Score=19.81 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHhhcc--CceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecC
Q 026921 19 RDVRNAFEG--SSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 19 ~~VrdAF~~--~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk 72 (231)
+.+.+.|.. -.+++|||.. ++.-+++.|.+ -+|.+++--++..+--+.|.
T Consensus 56 ~~l~~~~~~~~v~~~~vd~d~-~~~~~~~~~v~---~~Pt~~~~~~G~~~~~~~G~ 107 (121)
T 2j23_A 56 EKISDTPAGDKVGFYKVDVDE-QSQIAQEVGIR---AMPTFVFFKNGQKIDTVVGA 107 (121)
T ss_dssp HHHHTSTHHHHSEEEEEETTT-CHHHHHHHTCC---SSSEEEEEETTEEEEEEESS
T ss_pred HHHHHHCcCCcEEEEEEECcC-CHHHHHHcCCC---cccEEEEEECCeEEeeEcCC
Confidence 445555554 7889999975 33344555543 58987664333333344553
No 21
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.21 E-value=1.1e+02 Score=20.68 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=25.6
Q ss_pred hccCceEeehhHHHHHhhc-----cCceEEEcCCCCCchhHHHhhhhhhcc
Q 026921 8 AAKNGVYLTLVRDVRNAFE-----GSSLVKVNCKGMHASDYKKLGAKLKEL 53 (231)
Q Consensus 8 L~kNGvY~~lV~~VrdAF~-----~~elVrIDC~gl~~sDyKKIGaKLrdL 53 (231)
|.+.|+-+..+.+..+|+. .-.+|=+|. ++..+--.+-.+||..
T Consensus 24 L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~~~g~~~~~~l~~~ 72 (142)
T 2qxy_A 24 LEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEGEESLNLIRRIREE 72 (142)
T ss_dssp HGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTTHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCCCcHHHHHHHHHHH
Confidence 4556766655655555554 246777887 6655544555555543
No 22
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=20.18 E-value=1.9e+02 Score=19.87 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=30.7
Q ss_pred hHHHHHhhc-cCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEecC
Q 026921 18 VRDVRNAFE-GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 72 (231)
Q Consensus 18 V~~VrdAF~-~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRGk 72 (231)
++.+...|. .-.+++|||..- +.-+++.|.+ -+|.+++--.+.+++.+.|.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~v~---~~Pt~~~~~~~g~~~~~~G~ 124 (141)
T 3hxs_A 73 LEELSKEYAGKIYIYKVNVDKE-PELARDFGIQ---SIPTIWFVPMKGEPQVNMGA 124 (141)
T ss_dssp HHHHHHHTTTTCEEEEEETTTC-HHHHHHTTCC---SSSEEEEECSSSCCEEEESC
T ss_pred HHHHHHHhcCceEEEEEECCCC-HHHHHHcCCC---CcCEEEEEeCCCCEEEEeCC
Confidence 455555665 478899999753 3334455442 48887664455555555553
No 23
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=20.16 E-value=88 Score=23.54 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred cCceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEec
Q 026921 27 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 71 (231)
Q Consensus 27 ~~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRG 71 (231)
.-.+++|||..- +.=.++.|.+ =+|.+++ |.+.+++-+.|
T Consensus 182 ~v~~~~vd~~~~-~~l~~~~~v~---~~Pt~~~-~~~g~~~~~~g 221 (241)
T 3idv_A 182 PIPLAKVDATAE-TDLAKRFDVS---GYPTLKI-FRKGRPYDYNG 221 (241)
T ss_dssp CCCEEEEETTTC-HHHHHHTTCC---SSSEEEE-EETTEEEECCS
T ss_pred cEEEEEEECCCC-HHHHHHcCCc---ccCEEEE-EECCeEEEecC
Confidence 368999999853 3335555543 3898776 55556655655
No 24
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.15 E-value=1.9e+02 Score=19.86 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHhhcc----CceEEEcCCCCCchhHHHhhhhhhcccCeeEEeecCceEEEEec
Q 026921 19 RDVRNAFEG----SSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 71 (231)
Q Consensus 19 ~~VrdAF~~----~elVrIDC~gl~~sDyKKIGaKLrdLVpCvllsF~~eqIlmWRG 71 (231)
..+.+.+.. -.+++|||..- ..=+++.|.+ -+|.+++- .+.++..+.|
T Consensus 57 ~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~---~~Pt~~~~-~~G~~~~~~g 108 (140)
T 2dj1_A 57 EKIASTLKDNDPPIAVAKIDATSA-SMLASKFDVS---GYPTIKIL-KKGQAVDYDG 108 (140)
T ss_dssp HHHHHHHHSSSSCCEEEEECTTTC-HHHHHHTTCC---SSSEEEEE-ETTEEEECCS
T ss_pred HHHHHHHhccCCceEEEEEeCccc-HHHHHHCCCC---ccCeEEEE-ECCcEEEcCC
Confidence 344444543 67899999753 2333444432 48988765 5555666666
Done!