BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026922
MASCFRGGSGISSISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGF
SPYGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGM
FAYGLVAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSY
CLTSALLSFSLFFISLKVCFLCQNFSHFIADSLLSVDVVESINYHYRLSFV

High Scoring Gene Products

Symbol, full name Information P value
LTO1
Lumen Thiol Oxidoreductase 1 		protein from Arabidopsis thaliana 1.1e-37

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026922
        (231 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2128028 - symbol:LTO1 "Lumen Thiol Oxidoreduct...   404  1.1e-37   1


>TAIR|locus:2128028 [details] [associations]
            symbol:LTO1 "Lumen Thiol Oxidoreductase 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0003955 "NAD(P)H dehydrogenase (quinone) activity"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0010207
            "photosystem II assembly" evidence=RCA;IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:3.40.30.10
            InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0003955 GO:GO:0010207
            InterPro:IPR012932 Pfam:PF07884 SMART:SM00756 EMBL:AY099728
            EMBL:AY128903 IPI:IPI00540301 RefSeq:NP_567988.1 UniGene:At.43284
            ProteinModelPortal:Q8L540 STRING:Q8L540 PRIDE:Q8L540
            EnsemblPlants:AT4G35760.1 GeneID:829729 KEGG:ath:AT4G35760
            TAIR:At4g35760 HOGENOM:HOG000232446 InParanoid:Q8L540 OMA:YWCPHCH
            PhylomeDB:Q8L540 ProtClustDB:CLSN2689775 Genevestigator:Q8L540
            Uniprot:Q8L540
        Length = 376

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 85/207 (41%), Positives = 105/207 (50%)

Query:    25 RLSVLPVKCLXXX----XXXXXXXXXXXXXXXXXXXXXXXXXYGWCAGIGGVGFLETTYL 80
             R   +P+KC                                 Y W  GIGG+G L+T YL
Sbjct:    38 RFPAIPIKCSSSEPENGEDSAPSLSSSSSSSTSEVSTSNSSTYNWYTGIGGIGMLDTAYL 97

Query:    81 SYLKLTNSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYXXXXXXXXXXXRKSFPI 140
             +YLK+T SDAFCPIGG +CGDVLNSDYAVVFGVPLP IG   Y             + P 
Sbjct:    98 TYLKVTGSDAFCPIGGGTCGDVLNSDYAVVFGVPLPVIGFVMYGVVTALSAELGEGNLPF 157

Query:   141 GINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTXXXXXXXXXXXXXKVCF 200
             GI++S GR  L G +T+MA+ASAYFLYILST  SG++C YCL              K   
Sbjct:   158 GISKSNGRFALFGITTAMASASAYFLYILSTKLSGSSCLYCLVSAFLSFSLFFLSVKDVK 217

Query:   201 LCQNFSHFIADSL-LSVDVVESINYHY 226
             L Q     +   + L++ VV S+   Y
Sbjct:   218 L-QEIQQVVGLQICLAIIVVASLTASY 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.141   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       165   0.00093  107 3  11 22  0.43    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.60u 0.11s 11.71t   Elapsed:  00:00:00
  Total cpu time:  11.60u 0.11s 11.71t   Elapsed:  00:00:00
  Start:  Thu May  9 13:46:42 2013   End:  Thu May  9 13:46:42 2013

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