Query 026922
Match_columns 231
No_of_seqs 128 out of 424
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 2E-29 4.2E-34 207.1 15.2 130 63-198 5-141 (142)
2 PRK14889 VKOR family protein; 100.0 5.6E-28 1.2E-32 199.5 13.1 132 62-200 7-142 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 6.7E-26 1.5E-30 183.7 12.6 128 65-198 4-137 (137)
4 COG4243 Predicted membrane pro 99.9 1.8E-23 4E-28 174.9 12.8 131 62-201 10-150 (156)
5 PRK00611 putative disulfide ox 94.4 0.33 7.2E-06 40.2 8.7 60 67-132 69-130 (135)
6 PRK03113 putative disulfide ox 94.1 0.3 6.5E-06 40.6 8.0 64 64-132 67-134 (139)
7 PRK01749 disulfide bond format 84.1 8.1 0.00018 33.0 8.6 57 70-130 82-158 (176)
8 PRK02110 disulfide bond format 81.7 8.3 0.00018 32.7 7.7 58 70-132 81-159 (169)
9 PRK04388 disulfide bond format 79.6 9.6 0.00021 32.3 7.4 60 69-132 79-160 (172)
10 PF07098 DUF1360: Protein of u 78.9 3.8 8.2E-05 32.7 4.4 21 177-197 59-79 (105)
11 COG1138 CcmF Cytochrome c biog 52.3 1.5E+02 0.0033 30.7 10.6 65 67-132 124-192 (648)
12 PLN00092 photosystem I reactio 46.7 94 0.002 25.9 6.7 22 109-130 96-117 (137)
13 PLN00077 photosystem II reacti 29.6 60 0.0013 26.8 3.0 67 14-85 22-116 (128)
14 PF07330 DUF1467: Protein of u 27.3 1.4E+02 0.0031 22.9 4.6 10 50-59 38-47 (85)
15 PRK02110 disulfide bond format 25.5 3E+02 0.0064 23.3 6.7 30 163-193 27-56 (169)
16 PRK01749 disulfide bond format 25.4 3.2E+02 0.007 23.2 7.0 43 148-191 12-54 (176)
17 PRK04307 putative disulfide ox 25.2 5E+02 0.011 23.2 8.5 47 148-195 23-70 (218)
18 PF06781 UPF0233: Uncharacteri 22.9 2.2E+02 0.0047 22.1 4.9 9 73-81 46-54 (87)
19 TIGR00353 nrfE c-type cytochro 21.9 6E+02 0.013 25.9 9.1 34 98-132 107-140 (576)
20 PRK04388 disulfide bond format 21.7 4.2E+02 0.0091 22.3 7.0 32 163-195 24-55 (172)
21 PRK10369 heme lyase subunit Nr 20.5 7.3E+02 0.016 25.4 9.4 34 98-132 161-194 (571)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.97 E-value=2e-29 Score=207.13 Aligned_cols=130 Identities=37% Similarity=0.543 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hc
Q 026922 63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (231)
Q Consensus 63 ~~wllvLa~iGll~S~YLt~~k~~~-----~~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~ 135 (231)
..++++++.+|+++|.|++++|.+. +++.||+|+ +||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus 5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~ 84 (142)
T smart00756 5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 3344677889999999999999742 348999998 9999999999999999999999999999999888874 34
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhc
Q 026922 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKV 198 (231)
Q Consensus 136 ~rl~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~ 198 (231)
.+.+++. ++.+...++.+.++++|++|+|.++ ||++||||+++|++++++|+++..+
T Consensus 85 ~~~~~~~-----~~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 85 VTLPRWT-----WRLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred ccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence 4555211 1234445677788999999999885 9999999999999999999998765
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.95 E-value=5.6e-28 Score=199.52 Aligned_cols=132 Identities=23% Similarity=0.362 Sum_probs=103.9
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhhccc
Q 026922 62 PYGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKS 137 (231)
Q Consensus 62 ~~~wl-lvLa~iGll~S~YLt~~k--~~~~~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~~~~r 137 (231)
..+++ ++++.+|+++|.|++++| .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++.....
T Consensus 7 ~~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~- 85 (143)
T PRK14889 7 GILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT- 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-
Confidence 34444 566679999999999877 457789999999 8999999999999999999999999999999988874322
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhccc
Q 026922 138 FPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCF 200 (231)
Q Consensus 138 l~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~ 200 (231)
.+++..+. .|.| ...+.+++.|++|+|.++ ||++||||+++|++++++|++++...+
T Consensus 86 ~~~~~~~~--~~~~---~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~~~ 142 (143)
T PRK14889 86 LKRILGRV--ISLW---SIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIKLK 142 (143)
T ss_pred hhHHHHHH--HHHH---HHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111111 1222 234457899999998875 999999999999999999998877543
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.93 E-value=6.7e-26 Score=183.67 Aligned_cols=128 Identities=35% Similarity=0.601 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCC----CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccC
Q 026922 65 WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF 138 (231)
Q Consensus 65 wllvLa~iGll~S~YLt~~k~~~~----~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~~rl 138 (231)
++.+++.+|+++|.|++++|.+.. ++.||+++ .||++|++||||++||+||+.+|+++|..++.+++.. .+.+.
T Consensus 4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~ 83 (137)
T PF07884_consen 4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRL 83 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccch
Confidence 346788899999999999997644 49999998 9999999999999999999999999999999888763 33344
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhc
Q 026922 139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKV 198 (231)
Q Consensus 139 ~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~ 198 (231)
+++ . ....+..+.++.++++|+.|+|.++ +|++|+||+++|++++.++++++++
T Consensus 84 ~~~----~-~~~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 84 SRW----L-WLLLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp STT----H-HHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred hHH----H-HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 421 1 1233344556667899999998865 9999999999999999999988764
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.90 E-value=1.8e-23 Score=174.86 Aligned_cols=131 Identities=29% Similarity=0.459 Sum_probs=101.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHhH---hcCC--CCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhh
Q 026922 62 PYGWC-AGIGGVGFLETTYLSYLK---LTNS--DAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLA 134 (231)
Q Consensus 62 ~~~wl-lvLa~iGll~S~YLt~~k---~~~~--~~~Cdin~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~~ 134 (231)
..+|. +.++.+|.+.+.-+++++ ++++ ...||.|+ .||++|++||||++|||||+++|+++|.++.++++...
T Consensus 10 ~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all~~ 89 (156)
T COG4243 10 ILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALLGV 89 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 45555 344446555555555555 4443 45678888 99999999999999999999999999999999998753
Q ss_pred cccCCccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhcccc
Q 026922 135 RKSFPIGINESYGRLILLGS---STSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFL 201 (231)
Q Consensus 135 ~~rl~~~~~~~~~rw~~lgl---~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~~ 201 (231)
...++ ||+|.++ ++.+.+++.||+|++.+ ++|++|+||+++|+.++.+|++...++++
T Consensus 90 ~~~l~--------~~~~~~l~v~~~~g~~f~~yLiY~e~~-~~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 90 AGVLE--------RWTWIGLLVGSLVGSAFVPYLIYLELF-VIGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344 3444433 46677889999997766 59999999999999999999999988876
No 5
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=94.38 E-value=0.33 Score=40.23 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhHh-cC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 67 AGIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 67 lvLa~iGll~S~YLt~~k~-~~-~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
+.++..|+.++.|-.+.+. +. ..+.|. +.+|+++ .| .++|++.|.+-+++|..++++.+.
T Consensus 69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~ 130 (135)
T PRK00611 69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence 3456799999999877664 43 235775 4689998 34 789999999999999887766654
No 6
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=94.15 E-value=0.3 Score=40.57 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 64 GWCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 64 ~wllvLa~iGll~S~YLt~~k-~~---~~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
+..+.++..|+.++.|-.+.+ .+ +..+.|. +.+|+++.-.+ +.|+|.|.+-+++|.++.++.+.
T Consensus 67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~ 134 (139)
T PRK03113 67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence 344556679999999887765 34 2235776 35899865443 56699999999999988777655
No 7
>PRK01749 disulfide bond formation protein B; Provisional
Probab=84.13 E-value=8.1 Score=32.96 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHh-cCCCCCCCC------------------CC-CCccccccccchhccCCchhHHHHHHHHHHHHH
Q 026922 70 GGVGFLETTYLSYLKL-TNSDAFCPI------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVL 129 (231)
Q Consensus 70 a~iGll~S~YLt~~k~-~~~~~~Cdi------------------n~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~L 129 (231)
+..|..++.|-...+. +++...|+. .+ .+|+++. -++||++.|.+-+++|.+++++
T Consensus 82 al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~~ 157 (176)
T PRK01749 82 AWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLVV 157 (176)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHHH
Confidence 3489999988765443 222257863 24 6898754 4589999999999999888877
Q ss_pred H
Q 026922 130 G 130 (231)
Q Consensus 130 a 130 (231)
+
T Consensus 158 ~ 158 (176)
T PRK01749 158 A 158 (176)
T ss_pred H
Confidence 5
No 8
>PRK02110 disulfide bond formation protein B; Provisional
Probab=81.69 E-value=8.3 Score=32.71 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCCC--------------------C-CCccccccccchhccCCchhHHHHHHHHHHHH
Q 026922 70 GGVGFLETTYLSYLKLTNSDAFCPIG--------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV 128 (231)
Q Consensus 70 a~iGll~S~YLt~~k~~~~~~~Cdin--------------------~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~ 128 (231)
+..|..++.|-...+.. +...|... + .+|+++ +-++||++.+.+-+++|.++++
T Consensus 81 a~~G~~ia~~h~~~q~~-p~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~~l 155 (169)
T PRK02110 81 ALGGIAVAGRHVYIQLN-PGFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLIAV 155 (169)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHHHH
Confidence 45899999888877642 22667511 2 357663 4458999999999999987766
Q ss_pred HHHH
Q 026922 129 LGLL 132 (231)
Q Consensus 129 Lal~ 132 (231)
+.+.
T Consensus 156 ~~~~ 159 (169)
T PRK02110 156 AVAV 159 (169)
T ss_pred HHHH
Confidence 5433
No 9
>PRK04388 disulfide bond formation protein B; Provisional
Probab=79.64 E-value=9.6 Score=32.29 Aligned_cols=60 Identities=20% Similarity=0.401 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhHh-c-CCCCCCCC-------------------CC-CCccccccccchhccCCchhHHHHHHHHHH
Q 026922 69 IGGVGFLETTYLSYLKL-T-NSDAFCPI-------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126 (231)
Q Consensus 69 La~iGll~S~YLt~~k~-~-~~~~~Cdi-------------------n~-isC~~VL~S~yA~lfGiPnallGl~~Y~~v 126 (231)
.+..|..++.|-...+. + +..+.|+. .+ .+|+++ +=+++|++.|.+-+++|.++
T Consensus 79 ~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~----~w~~lGLSmp~wsll~f~~l 154 (172)
T PRK04388 79 AAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNI----DWRFLGLSMPMWSMVWFVGL 154 (172)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCC----cchhhccCHHHHHHHHHHHH
Confidence 34589999998887764 3 33467841 12 468774 33589999999999999888
Q ss_pred HHHHHH
Q 026922 127 AVLGLL 132 (231)
Q Consensus 127 l~Lal~ 132 (231)
.++++.
T Consensus 155 ~~l~~~ 160 (172)
T PRK04388 155 ALWALY 160 (172)
T ss_pred HHHHHH
Confidence 777654
No 10
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=78.92 E-value=3.8 Score=32.69 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHHHHHh
Q 026922 177 TCSYCLTSALLSFSLFFISLK 197 (231)
Q Consensus 177 lCpyC~vs~~vti~Lf~~s~~ 197 (231)
-||||+..|+.........+.
T Consensus 59 sCpwC~gvWvA~~~~~~~v~~ 79 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYVFA 79 (105)
T ss_pred cChhHHHHHHHHHHHHHHHHh
Confidence 699999999988766554443
No 11
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.31 E-value=1.5e+02 Score=30.73 Aligned_cols=65 Identities=17% Similarity=0.441 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCC--CC--CCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 67 AGIGGVGFLETTYLSYLKLTNSD--AF--CPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 67 lvLa~iGll~S~YLt~~k~~~~~--~~--Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
.+++..|++.++++.+.-+...+ .. =+..+-+=..++| .++-++.-|+=++|-.+|.+....+++
T Consensus 124 ~vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA 192 (648)
T COG1138 124 RVLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVA 192 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHH
Confidence 35666777777777766554211 11 1111134445777 788899999999999999998887766
No 12
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=46.74 E-value=94 Score=25.93 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=16.6
Q ss_pred hccCCchhHHHHHHHHHHHHHH
Q 026922 109 VVFGVPLPFIGMFAYGLVAVLG 130 (231)
Q Consensus 109 ~lfGiPnallGl~~Y~~vl~La 130 (231)
-.||+-|.++|.+.+++..++.
T Consensus 96 lplGlsn~~LgwIL~gVf~lIW 117 (137)
T PLN00092 96 LPFGLSNNLLGWILLGVFGLIW 117 (137)
T ss_pred ccccccCcchhhHHHhHHHHHH
Confidence 3489999999998887765443
No 13
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=29.59 E-value=60 Score=26.83 Aligned_cols=67 Identities=22% Similarity=0.455 Sum_probs=38.0
Q ss_pred ccCCCCCCccccccccccccccCCCCCCCCCCCCCCCC------------CCCC-----------CCC-----CCChhHH
Q 026922 14 ISSLPSLPHRTRLSVLPVKCLSSRQSRDSDSDSDLRTT------------PSPS-----------STS-----GFSPYGW 65 (231)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-----------~~~-----~~r~~~w 65 (231)
+.-|||+..+++ +|.|+-.+++...++.++-++. .+|+ .|. +.....|
T Consensus 22 vlGLP~l~~~~~----~v~Cs~e~k~~~~~~~~~~~~asl~a~~~a~~a~a~PA~AlVDeRlsteGtGl~lGlsn~~Lgw 97 (128)
T PLN00077 22 VLGLPQLRARSE----RVRCSYEKKAANKADVNKLAGASLLVTSAATMAYAHPAFALVDERMSTEGTGLSLGLSNNLLGW 97 (128)
T ss_pred ccCchhhhccCC----ceEEecccCcccccccccchhHHHHHHHHHHHhccccHHHHHhHhhcCCCccccccccCchhhH
Confidence 456777763322 5889998887765555544310 1111 011 1123344
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 026922 66 CAGIGGVGFLETTYLSYLKL 85 (231)
Q Consensus 66 llvLa~iGll~S~YLt~~k~ 85 (231)
..++..|++-+.|.+|.+.
T Consensus 98 -IL~gVf~liw~ly~~~~~~ 116 (128)
T PLN00077 98 -ILLGVFGLIWSLYTTYTSD 116 (128)
T ss_pred -HHHhHHHHHHHHHhheecc
Confidence 3455689999999988774
No 14
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=27.29 E-value=1.4e+02 Score=22.86 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q 026922 50 TTPSPSSTSG 59 (231)
Q Consensus 50 ~~~~~~~~~~ 59 (231)
+.++.+|.++
T Consensus 38 Gt~~sAP~~~ 47 (85)
T PF07330_consen 38 GTDPSAPANP 47 (85)
T ss_pred CCCCCCCCCc
Confidence 3344444443
No 15
>PRK02110 disulfide bond formation protein B; Provisional
Probab=25.52 E-value=3e+02 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Q 026922 163 AYFLYILSTNFSGATCSYCLTSALLSFSLFF 193 (231)
Q Consensus 163 vyLlyi~~~~vI~alCpyC~vs~~vti~Lf~ 193 (231)
+.-+|+|.+. --.-|+.|+..-...+.+.+
T Consensus 27 ~~Al~~Q~~~-g~~PC~LCi~QR~~~~~i~l 56 (169)
T PRK02110 27 GGALYLQYVK-GEDPCPLCIIQRYAFLLIAI 56 (169)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHHH
Confidence 3335777654 56899999977665554433
No 16
>PRK01749 disulfide bond formation protein B; Provisional
Probab=25.44 E-value=3.2e+02 Score=23.16 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Q 026922 148 RLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSL 191 (231)
Q Consensus 148 rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~L 191 (231)
|+.|+.+..+.....+.-+|+|.+. --.-|+.|+..-..-.++
T Consensus 12 r~~~~l~~l~~~~ll~~Al~~Q~~l-gl~PC~LCi~QR~~~~~l 54 (176)
T PRK01749 12 RGAWLLLAFTALALELTALYFQHVM-LLKPCVMCIYERVALFGI 54 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHH
Confidence 4444443322222223335777653 458999999766544433
No 17
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=25.22 E-value=5e+02 Score=23.25 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhCccchhhHHHHHHHHHHHHHH
Q 026922 148 RLILLGSSTSMAAASAYF-LYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (231)
Q Consensus 148 rw~~lgl~~~~a~~svyL-lyi~~~~vI~alCpyC~vs~~vti~Lf~~s 195 (231)
|+.|+.+........+.- +|+|.+. -=+-|+.|+..-...+.+.+..
T Consensus 23 R~~wlll~l~~~~L~~~Al~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~g 70 (218)
T PRK04307 23 RFLWLLMAIAMGGLIILAHSFFQIYL-YMAPCEQCVYIRFAMFVMAIGG 70 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHH
Confidence 444444433333333333 4777654 4589999998876655554443
No 18
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.89 E-value=2.2e+02 Score=22.06 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 026922 73 GFLETTYLS 81 (231)
Q Consensus 73 Gll~S~YLt 81 (231)
-.++..|++
T Consensus 46 ~WiVvyYi~ 54 (87)
T PF06781_consen 46 LWIVVYYIS 54 (87)
T ss_pred HHHhhhhcc
Confidence 345555554
No 19
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=21.89 E-value=6e+02 Score=25.93 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=27.1
Q ss_pred CccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 98 SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 98 sC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
+=...++++|=. +.+|..++|.++|++.+..++.
T Consensus 107 ~lnP~Lq~~~l~-iH~p~~~lgya~~~v~f~~a~~ 140 (576)
T TIGR00353 107 DLNPMLQDPGLI-FHPPLLYMGYVGFSVAFAFALA 140 (576)
T ss_pred CCCchhcCCChh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 344568887544 8899999999999999988876
No 20
>PRK04388 disulfide bond formation protein B; Provisional
Probab=21.75 E-value=4.2e+02 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH
Q 026922 163 AYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (231)
Q Consensus 163 vyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s 195 (231)
+.-+|+|... --.-|+.|+..-..-+++.+..
T Consensus 24 ~~Aly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~ 55 (172)
T PRK04388 24 AYAIFVQLHL-GLEPCPLCIFQRIAFAALALLF 55 (172)
T ss_pred HHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHH
Confidence 3335777654 5689999998765554444333
No 21
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=20.46 E-value=7.3e+02 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred CccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 98 SCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 98 sC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
+=...++++|-. +..|..++|.++|++....++.
T Consensus 161 ~LnP~Lq~~wl~-iHpp~l~lgYa~~~v~fa~a~~ 194 (571)
T PRK10369 161 DLNPMLQHPGLI-FHPPLLYLGYGGLMVAASVALA 194 (571)
T ss_pred CCCchhcCCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344568887665 7789999999999988887765
Done!