Query 026922
Match_columns 231
No_of_seqs 128 out of 424
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kp9_A Vkorc1/thioredoxin doma 100.0 3E-32 1E-36 246.0 15.2 158 62-227 18-179 (291)
2 2zuq_A Disulfide bond formatio 89.0 1.7 5.7E-05 35.8 8.2 61 68-132 79-159 (176)
3 2zuq_A Disulfide bond formatio 16.0 2.2E+02 0.0077 22.8 5.3 26 166-192 30-55 (176)
4 1col_A Colicin A; antibacteria 12.0 1.6E+02 0.0054 25.1 3.3 27 106-132 160-186 (204)
5 3few_X Colicin S4; cell lysis, 11.6 1.2E+02 0.0039 28.9 2.4 27 106-132 455-481 (505)
6 1q90_G Cytochrome B6F complex 10.8 2.1E+02 0.0071 18.0 2.7 16 69-84 16-31 (37)
7 1vf5_G Protein PET G; photosyn 8.1 1.6E+02 0.0056 18.5 1.4 16 69-84 16-31 (37)
8 1a87_A Colicin N; bacteriocin, 8.0 2.6E+02 0.0088 25.3 3.2 26 107-132 278-303 (321)
9 2hlg_A Fruit-specific protein; 7.7 76 0.0026 20.1 -0.3 6 176-181 16-21 (39)
10 2k9h_A Glycoprotein; hantaviru 7.7 69 0.0024 22.0 -0.5 10 174-183 27-36 (57)
No 1
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=99.98 E-value=3e-32 Score=245.98 Aligned_cols=158 Identities=24% Similarity=0.323 Sum_probs=127.9
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHhHhcC-CCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-hcccC
Q 026922 62 PYGWC-AGIGGVGFLETTYLSYLKLTN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF 138 (231)
Q Consensus 62 ~~~wl-lvLa~iGll~S~YLt~~k~~~-~~~~Cdin~isC~~VL~S~yA~lfGiPnallGl~~Y~~vl~Lal~~-~~~rl 138 (231)
..+|+ ++++++|+++|+||+++|+++ +++.||+| .||++|++||||++||+||+++|+++|++++++++.. .+.++
T Consensus 18 ~~~~~~~~l~~iGl~~s~yLt~~~~~~~~~~~C~~~-~sC~~Vl~S~~a~~fGiP~~~~G~~~y~~v~~l~~~~~~~~~~ 96 (291)
T 3kp9_A 18 HSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGD-GGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDGLPLV 96 (291)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHCCCCSCCCC----CCSGGGSSSSEETTEEHHHHHHHHHHHHHHHHHCC--CTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CChhhhcccccHhhcCCcHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34444 677889999999999999887 88999987 7999999999999999999999999999999999863 34556
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHhcccccccchhhhhhHH-HHHH
Q 026922 139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKVCFLCQNFSHFIADSL-LSVD 217 (231)
Q Consensus 139 ~~~~~~~~~rw~~lgl~~~~a~~svyLlyi~~~~vI~alCpyC~vs~~vti~Lf~~s~~~~~~~~~~~~~~~~~l-~~~~ 217 (231)
+++ . ++.+++.++++.+++.||+|++.++ ||++||||+++|++++++|++++.+++| +|++|.+..++ .++.
T Consensus 97 ~~~----~-~~~l~~~~~~~~~fs~yL~y~~~~v-i~a~C~~C~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~~~~~~~ 169 (291)
T 3kp9_A 97 KRW----R-WPALFGLVSAMTAFEMYMLYLMVAV-LRQFCMYCTTAIILVAGLGLVTVLGHRW-LDGGKLAFSYILVAFL 169 (291)
T ss_dssp STT----H-HHHHHHHHHHHHHHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHSSCHH-HHCTHHHHHHHHHHHH
T ss_pred hhH----H-HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHHHhCCCh-hhhhHHHHHHHHHHHH
Confidence 532 1 2234444677888999999998875 9999999999999999999999999999 99999999998 6666
Q ss_pred HHHHhhcccc
Q 026922 218 VVESINYHYR 227 (231)
Q Consensus 218 ~~~~~~~~~~ 227 (231)
+.......|+
T Consensus 170 ~~~~~~~~~~ 179 (291)
T 3kp9_A 170 TLVTTIGVYA 179 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6443333444
No 2
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=88.97 E-value=1.7 Score=35.82 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhH-hcCCCCCCCCC------------------C-CCccccccccchhccCCchhHHHHHHHHHHH
Q 026922 68 GIGGVGFLETTYLSYLK-LTNSDAFCPIG------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVA 127 (231)
Q Consensus 68 vLa~iGll~S~YLt~~k-~~~~~~~Cdin------------------~-isC~~VL~S~yA~lfGiPnallGl~~Y~~vl 127 (231)
..+.+|..++.|=+..+ .++..+.|+.. + .+|+++ +=++||++.|.+-+++|.+++
T Consensus 79 ~~a~~G~~iA~~H~~lq~~p~~~~~C~~~~~~~~~~pl~~~l~~~~~~~g~C~~~----~w~~lGlsmp~wsli~F~~~~ 154 (176)
T 2zuq_A 79 YSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDCAER----QWDFLGLEMPQWLLGIFIAYL 154 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCCCCCC-----CCSSTTCSTTTCCCCCCCSC----CCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhcccCCCHHHHHHHHhcCCCCCccc----cHHHcCCcHHHHHHHHHHHHH
Confidence 34558999998866655 44444789631 4 688886 335899999999999998888
Q ss_pred HHHHH
Q 026922 128 VLGLL 132 (231)
Q Consensus 128 ~Lal~ 132 (231)
++++.
T Consensus 155 ~~~~~ 159 (176)
T 2zuq_A 155 IVAVL 159 (176)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 77755
No 3
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=15.99 E-value=2.2e+02 Score=22.78 Aligned_cols=26 Identities=12% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHHHHHhCccchhhHHHHHHHHHHH
Q 026922 166 LYILSTNFSGATCSYCLTSALLSFSLF 192 (231)
Q Consensus 166 lyi~~~~vI~alCpyC~vs~~vti~Lf 192 (231)
+|+|.+. --.-|+.|+.--....++.
T Consensus 30 l~fQ~v~-gl~PC~LCi~QR~~~~~~~ 55 (176)
T 2zuq_A 30 LWFQHVM-LLKPSVLCIYERVALFGVL 55 (176)
T ss_dssp HHHHHTS-CCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCcHhHHHHHHHHHHHH
Confidence 5777643 4689999998766555543
No 4
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=11.99 E-value=1.6e+02 Score=25.09 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred cchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 106 DYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 106 ~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
.++-.+|+|...+|+++|.++.+++.+
T Consensus 160 a~~~~~g~p~t~~Gi~g~il~a~v~s~ 186 (204)
T 1col_A 160 AYALSLGVPAIAVGIAGILLAAVVGAL 186 (204)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHH
Confidence 356668899999999998666655544
No 5
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=11.57 E-value=1.2e+02 Score=28.92 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=21.1
Q ss_pred cchhccCCchhHHHHHHHHHHHHHHHH
Q 026922 106 DYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 106 ~yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
.+|-.+|+|...+|+++|.++.+++.+
T Consensus 455 AfSlilG~P~taIGIaGiILmAvVgAl 481 (505)
T 3few_X 455 AYALSLGAPAIAVGIVGILLAAVVGAL 481 (505)
T ss_dssp HHHHHCCSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 467778999999999998777666654
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=10.79 E-value=2.1e+02 Score=18.02 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhH
Q 026922 69 IGGVGFLETTYLSYLK 84 (231)
Q Consensus 69 La~iGll~S~YLt~~k 84 (231)
+..+|+.+++|+-|.+
T Consensus 16 vtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 16 VTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3457999999998864
No 7
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=8.07 E-value=1.6e+02 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhH
Q 026922 69 IGGVGFLETTYLSYLK 84 (231)
Q Consensus 69 La~iGll~S~YLt~~k 84 (231)
+..+|+.+++|+-|.+
T Consensus 16 vtl~GLfv~Ay~QyrR 31 (37)
T 1vf5_G 16 ATLGGLFYAAYQQYKR 31 (37)
T ss_dssp HHHHHHTHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4457999999998754
No 8
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=7.98 E-value=2.6e+02 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=19.1
Q ss_pred chhccCCchhHHHHHHHHHHHHHHHH
Q 026922 107 YAVVFGVPLPFIGMFAYGLVAVLGLL 132 (231)
Q Consensus 107 yA~lfGiPnallGl~~Y~~vl~Lal~ 132 (231)
++-.+|+|...+|+++|.++.+++.+
T Consensus 278 f~~~~glp~t~lGI~Giil~a~v~sl 303 (321)
T 1a87_A 278 FLPISGLAVTALGVIGIMTISYLSSF 303 (321)
T ss_dssp TCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccchHHHHHHHHHHHHHHHH
Confidence 45557899999999999666555544
No 9
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=7.69 E-value=76 Score=20.13 Aligned_cols=6 Identities=33% Similarity=1.530 Sum_probs=4.2
Q ss_pred ccchhh
Q 026922 176 ATCSYC 181 (231)
Q Consensus 176 alCpyC 181 (231)
.+|+||
T Consensus 16 TlC~wC 21 (39)
T 2hlg_A 16 TLCQFC 21 (39)
T ss_dssp SSCCEE
T ss_pred Eecccc
Confidence 467777
No 10
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=7.65 E-value=69 Score=22.04 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=7.1
Q ss_pred hCccchhhHH
Q 026922 174 SGATCSYCLT 183 (231)
Q Consensus 174 I~alCpyC~v 183 (231)
.+.-||||+.
T Consensus 27 p~gqCPYC~~ 36 (57)
T 2k9h_A 27 INGQCPYCMT 36 (57)
T ss_dssp TTTBCTTTCC
T ss_pred CCCCCCcccC
Confidence 3667888873
Done!