RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026923
(231 letters)
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 284 bits (730), Expect = 1e-96
Identities = 98/231 (42%), Positives = 141/231 (61%), Gaps = 17/231 (7%)
Query: 6 EGGFSVAFDPLDGSSIVDTNFTVGTIFGVWP----------GDKLTGVTGRDQVAAAMGI 55
G F + +DPLDGSSI+D N+ VG+I +W D L TGR QVA+ + +
Sbjct: 116 NGEFILCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVV 175
Query: 56 YGPRTTYVIAIKDFPG-------THEFLLLDEGKWQHVKETTEIGEGKMFSPGNLRATFD 108
YGPRTT V+A+ G + + D GK+ + + K+FSP NLRA D
Sbjct: 176 YGPRTTGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKPQAKIFSPANLRAAQD 235
Query: 109 NPDYDKLINYYVKQKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPSSKAKLRLLFEVAPL 168
P Y +LI ++++++YTLRYTGG+VPDV QI VK++G+F N S ++ AKLR+ FEV +
Sbjct: 236 LPAYKQLIEFWMEKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAPAKLRMCFEVLAI 295
Query: 169 GLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEETLYGSS 219
L++E AGG +S+G+ S+LD I ++D R+ + GS +EI R EET S
Sbjct: 296 ALVVEAAGGRTSNGQKSLLDVAIEHMDHRSALCCGSADEIKRMEETFAALS 346
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 235 bits (601), Expect = 8e-77
Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 18/228 (7%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTGVTGRDQVAAAM 53
+ G + V FDPLDGSS +D +VGTIFG++ P +K GR+ VAA
Sbjct: 142 VEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGY 201
Query: 54 GIYGPRTTYVIAIKDFPGTHEFLLL-DEGKWQHVKETTEIGE-GKMFSPGNLRATFDNPD 111
+YG T V+A+ G + F+L G++ V + +I + GK++S A +P
Sbjct: 202 ALYGSATMLVLAMDC--GVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPA 259
Query: 112 YDKLINY-----YVKQKYTLRYTGGMVPDVNQIIVKEKGIFTN-VTSPSSKAKLRLLFEV 165
+ I Y RY G MV DV++ +V GIF S KLRLL+E
Sbjct: 260 VTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVY-GGIFLYPANKKSPNGKLRLLYEC 318
Query: 166 APLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEE 213
P+ ++E AGG ++ GK +VLD + ++ R V GS ++++ F +
Sbjct: 319 NPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLK 366
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 234 bits (598), Expect = 9e-77
Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTGVTGRDQVAAAM 53
+ G + V FDPLDGSS +D ++GTIFG++ P +K GR+ VAA
Sbjct: 105 VEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGY 164
Query: 54 GIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE-GKMFSPGNLRATFDNPD 111
+YG T V+A+ + G + F+L G++ V +I + G ++S A +P
Sbjct: 165 ALYGSATMLVLAMVN--GVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPA 222
Query: 112 YDKLINY-----YVKQKYTLRYTGGMVPDVNQIIVKEKGIFTN-VTSPSSKAKLRLLFEV 165
+ I Y RY G MV DV++ +V GIF S K KLRLL+E
Sbjct: 223 ITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVY-GGIFMYPANKKSPKGKLRLLYEC 281
Query: 166 APLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEE 213
P+ ++E AGG ++ GK +VLD V ++ R + GS ++ E
Sbjct: 282 NPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLE 329
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 221 bits (565), Expect = 1e-71
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 35/247 (14%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT---------------- 44
+ G + V FDPLDGSS +D + G+IFG++ +
Sbjct: 113 VEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQR 172
Query: 45 --------GRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE- 94
G + +AA +Y +V+ I G F L G++ +E +I +
Sbjct: 173 CIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGK--GVFVFTLDPLYGEFVLTQENLQIPKS 230
Query: 95 GKMFSPGNLRATFDNPDYDKLINYYVKQ-----KYTLRYTGGMVPDVNQIIVKEKGIFTN 149
GK++S + + K I+ + Y+ RY G +V D ++ ++ GI+
Sbjct: 231 GKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLY-GGIYGY 289
Query: 150 -VTSPSSKAKLRLLFEVAPLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEI 208
S KLRLL+E AP+ ++E AGG SDG VLD + R + GS E+
Sbjct: 290 PRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEV 349
Query: 209 IRFEETL 215
+ E+ L
Sbjct: 350 EKVEKYL 356
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 206 bits (526), Expect = 4e-66
Identities = 70/231 (30%), Positives = 96/231 (41%), Gaps = 21/231 (9%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT---------GRDQVAA 51
G + V DPLDGSS +D N +VGTIF ++ G G QVAA
Sbjct: 97 FEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAA 156
Query: 52 AMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE-GKMFSPGNLRATFDN 109
+YG T V G H F G + +E E GK +S
Sbjct: 157 GYVVYGSSTMLVYTTGC--GVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFP 214
Query: 110 PDYDKLINY------YVKQKYTLRYTGGMVPDVNQIIVKEKGIFTN-VTSPSSKAKLRLL 162
K I + + YT RY G +V D ++ ++K GI+ T+ KLRLL
Sbjct: 215 NGVKKYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLK-GGIYLYPSTASHPDGKLRLL 273
Query: 163 FEVAPLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEE 213
+E P+ L E AGG +SDGK +LD + L R G+ + + E
Sbjct: 274 YECNPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVER 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.21
Identities = 43/264 (16%), Positives = 69/264 (26%), Gaps = 91/264 (34%)
Query: 8 GFSVAFDPLDGSSIVDTNFTVGTI-FGVWPGDKL----------TGVTGRDQVAAAMGIY 56
GFS+ IV N TI FG G ++ T V G+ +
Sbjct: 1658 GFSI-------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 57 GPRTTYVIAIKDFPGTHEFLLLDE-----------GKWQHVKETTEIGEGKMF---SPG- 101
+T F L + ++ +K I F S G
Sbjct: 1711 NEHSTSYT----FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 102 --------------------NLRATFDNPDYDKLINYYVKQKYTLRYTGGMV---PDVNQ 138
R + V + R GM+ P
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRG--------MTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 139 IIVKEKGIFTNVTSPSSKAKLRLLFEVAPLGLLIE----NAGG--YSSDGKISVLDKVIN 192
++ + V + G L+E N Y + G + LD V N
Sbjct: 1819 ASFSQEALQYVVERVGKRT-----------GWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 193 NLDDRTQVAYGSKN-EIIRFEETL 215
L+ + +II +++L
Sbjct: 1868 VLN-----FIKLQKIDIIELQKSL 1886
Score = 27.3 bits (60), Expect = 5.0
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 19/79 (24%)
Query: 151 TSPSSKAKLRLLFEVAPLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIR 210
TS +++ ++ A + G S+LD VINN + T G K + IR
Sbjct: 1638 TSKAAQD----VWNRA-DNHFKDTYG-------FSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 211 -------FEETLYGSSRLK 222
FE + G + +
Sbjct: 1686 ENYSAMIFETIVDGKLKTE 1704
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.31
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 25/105 (23%)
Query: 135 DVNQIIVKEKGIFTN------VTSPSSKAKLRLLFEVAPLGLLIENAGGYSSDGKISVLD 188
D + K I + + S + + LF LL +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMV---------Q 80
Query: 189 KVINNLDDR------TQVAYGSKNEIIRFEETLYGSSRLKGGVPV 227
K + + + + + + + RL V
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.99
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 48 QVAAAMGIYGPRTTYVIAIKDFPGTHE 74
++ A++ +Y + +AIK T E
Sbjct: 24 KLQASLKLYADDSAPALAIK---ATME 47
Score = 28.8 bits (63), Expect = 1.1
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 84 QHVKETTEIGEG--KMFSPGN-----LRATFD 108
Q +K+ + K+++ + ++AT +
Sbjct: 20 QALKKL----QASLKLYADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 3.1
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 6/27 (22%)
Query: 205 KNEIIRFEETLYGSSRLKGGVPVGAAA 231
K + + + + LK A A
Sbjct: 19 KQALKKLQ------ASLKLYADDSAPA 39
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 27.5 bits (60), Expect = 3.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
EGK+ P +++ T D+P KL + Y + +
Sbjct: 133 EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 166
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 26.4 bits (59), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 103 LRATFDNPDYDKLINYYVKQKYTLRYTGGMVPDVNQIIVKEKGIFTN 149
LRA F NPD+ + +V+ R G+ P+ I+V ++G+ +
Sbjct: 233 LRAIFPNPDHTMMPGMFVR----ARLEEGLNPNA--ILVPQQGLEHH 273
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant,
coat protein, viral protein; 2.00A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A
2snv_A 1z8y_Q 1wyk_A
Length = 161
Score = 26.3 bits (57), Expect = 7.9
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
EGK+ P +++ T D+P KL + Y + +
Sbjct: 28 EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 61
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A
{Venezuelan equine encephalitis virus} SCOP: b.47.1.3
PDB: 1ep6_A 3j0c_C
Length = 157
Score = 25.9 bits (56), Expect = 9.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
GK+F P ++ DN L KY L Y
Sbjct: 26 GGKLFRPMHVEGKIDNDVLAAL-KTKKASKYDLEY 59
>1vcp_A Semliki forest virus capsid protein; virus coat protein,
polyprotein, transmembrane, glycoprotein, nucleocapsid
protein, viral protein; 3.00A {Semliki forest virus}
SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Length = 149
Score = 25.8 bits (56), Expect = 9.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
K+ P +++ DN D KL + KY L
Sbjct: 19 GDKVMKPAHVKGVIDNADLAKL-AFKKSSKYDLEC 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.405
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,699,088
Number of extensions: 229694
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 23
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)