RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026923
(231 letters)
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 200 bits (511), Expect = 3e-64
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVT---------------- 44
+ G + V FDPLDGSS +D + G+IFG++ +
Sbjct: 96 VEESYSGNYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQR 155
Query: 45 --------GRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLL-LDEGKWQHVKETTEIGE- 94
G + +AA +Y +V+ I G F L G++ +E +I +
Sbjct: 156 CIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGK--GVFVFTLDPLYGEFVLTQENLQIPKS 213
Query: 95 GKMFSPGNLRATFDNPDYDKLINYY-----VKQKYTLRYTGGMVPDVNQIIVKEKGIFTN 149
GK++S + + K I+ + Y+ RY G +V D ++ ++
Sbjct: 214 GKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYP 273
Query: 150 VTSPSSKAKLRLLFEVAPLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEII 209
S KLRLL+E AP+ ++E AGG SDG VLD + R + GS E+
Sbjct: 274 RDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVE 333
Query: 210 RFEETL 215
+ E+ L
Sbjct: 334 KVEKYL 339
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 328
Score = 200 bits (509), Expect = 4e-64
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 18/228 (7%)
Query: 1 MGGPAEGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-------PGDKLTGVTGRDQVAAAM 53
+ G + V FDPLDGSS +D ++GTIFG++ P +K GR+ VAA
Sbjct: 98 VEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGY 157
Query: 54 GIYGPRTTYVIAIKDFPGTHEFLLLDEGKWQHV---KETTEIGEGKMFSPGNLRATFDNP 110
+YG T V+A+ + G + F+L D + + ++ +G ++S A +P
Sbjct: 158 ALYGSATMLVLAMVN--GVNCFML-DPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDP 214
Query: 111 DYDKLINY-----YVKQKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPSSKAKLRLLFEV 165
+ I Y RY G MV DV++ +V S K KLRLL+E
Sbjct: 215 AITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYEC 274
Query: 166 APLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEE 213
P+ ++E AGG ++ GK +VLD V ++ R + GS ++ E
Sbjct: 275 NPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLE 322
>d1xi6a_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 249
Score = 27.7 bits (60), Expect = 1.2
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 163 FEVAPLGLLIENAGGYSSDGKISVLDKVINNLDDRTQVAYGSKN 206
++A ++ + AG D +D N D +A S+
Sbjct: 200 TDIAAGTIIAKEAGALIKDSAGKDIDISFNATDRLDVIAVNSEE 243
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine
encephalitis virus [TaxId: 11036]}
Length = 156
Score = 26.4 bits (58), Expect = 1.9
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
GK+F P ++ DN L KY L Y
Sbjct: 25 GGKLFRPMHVEGKIDNDVLAAL-KTKKASKYDLEY 58
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 26.6 bits (58), Expect = 2.2
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 97 MFSPGNLRATFDNPDYD----KLI--NYYVKQKYTLRYT---GGMVPDVNQIIVK 142
M P NL TF D + + + ++ Y R+ G M +V + I +
Sbjct: 1 MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVRREIFE 55
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus
[TaxId: 11033]}
Length = 149
Score = 25.6 bits (56), Expect = 3.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
K+ P +++ DN D KL + KY L
Sbjct: 19 GDKVMKPAHVKGVIDNADLAKL-AFKKSSKYDLEC 52
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId:
11034]}
Length = 152
Score = 25.7 bits (56), Expect = 3.7
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 94 EGKMFSPGNLRATFDNPDYDKLINYYVKQKYTLRY 128
EGK+ P +++ T D+P KL + Y + +
Sbjct: 21 EGKVMKPLHVKGTIDHPVLSKL-KFTKSSAYDMEF 54
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 25.3 bits (55), Expect = 4.5
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 56 YGPRTTYVIAIKDFPGTHEFLL--LDEGKWQHVKETTEIGEGKMFS------PGNLRATF 107
GP+ + K + E ++ LD K+ + ++F P ++ +
Sbjct: 24 IGPKRAVDLIQKH--KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKW 81
Query: 108 DNPDYDKLINYYVKQK 123
P+ ++LI + +K
Sbjct: 82 SEPNEEELIKFMCGEK 97
>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase
{Saccharopolyspora erythraea [TaxId: 1836]}
Length = 255
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 5/58 (8%)
Query: 35 WPGDKLTGVTGRDQVAAAMGIYGPRTTYVIAIKDFPGTHEFLLLDEGKWQHVKETTEI 92
L G + P + PG H F ++ E H
Sbjct: 196 TGLPTLLVSAGEPMGPWPDDSWKPTWPFEHDTVAVPGDH-FTMVQE----HADAIARH 248
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 24.9 bits (54), Expect = 6.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 154 SSKAKLRLLFEVAPLGLLIENAGGY 178
S + LL +V PL L IE AGG
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGV 25
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.9 bits (53), Expect = 7.2
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 177 GYSSDGKISVLDKVINNLDDRTQVAYGSKNEIIRFEETLYGSSR 220
+S GK ++L K+I L R K+ + G
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDS 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.405
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,959
Number of extensions: 42165
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)