Query 026925
Match_columns 230
No_of_seqs 107 out of 1135
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 5.9E-42 1.3E-46 289.1 17.3 209 1-229 167-379 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 2.4E-41 5.2E-46 271.3 15.9 207 1-228 131-337 (476)
3 KOG0328 Predicted ATP-dependen 100.0 8.4E-41 1.8E-45 258.5 17.5 207 1-229 97-304 (400)
4 COG0513 SrmB Superfamily II DN 100.0 4.9E-40 1.1E-44 285.5 22.3 209 2-229 102-311 (513)
5 KOG0343 RNA Helicase [RNA proc 100.0 7.2E-39 1.6E-43 266.8 18.5 210 2-229 144-353 (758)
6 KOG0345 ATP-dependent RNA heli 100.0 2.4E-38 5.1E-43 259.3 18.7 213 2-229 82-295 (567)
7 KOG0326 ATP-dependent RNA heli 100.0 3.4E-38 7.3E-43 247.8 11.6 206 1-229 155-360 (459)
8 KOG0338 ATP-dependent RNA heli 100.0 1.6E-37 3.5E-42 256.6 15.1 207 2-229 255-464 (691)
9 PRK11776 ATP-dependent RNA hel 100.0 1.7E-35 3.7E-40 255.7 22.4 207 1-229 74-280 (460)
10 KOG0342 ATP-dependent RNA heli 100.0 1.4E-35 3.1E-40 244.2 20.2 210 2-229 157-368 (543)
11 KOG0339 ATP-dependent RNA heli 100.0 1.9E-35 4.1E-40 244.4 19.5 207 1-229 298-506 (731)
12 KOG0333 U5 snRNP-like RNA heli 100.0 9.1E-36 2E-40 247.0 17.4 207 1-229 324-555 (673)
13 PRK04837 ATP-dependent RNA hel 100.0 1.1E-34 2.4E-39 248.2 22.6 207 1-229 85-293 (423)
14 PRK11634 ATP-dependent RNA hel 100.0 7.9E-35 1.7E-39 257.6 22.2 208 1-229 76-283 (629)
15 PTZ00110 helicase; Provisional 100.0 9.8E-35 2.1E-39 254.4 21.7 208 1-229 205-415 (545)
16 PRK10590 ATP-dependent RNA hel 100.0 2.5E-34 5.5E-39 247.8 21.9 206 2-229 78-283 (456)
17 KOG0335 ATP-dependent RNA heli 100.0 6.3E-35 1.4E-39 243.0 16.5 207 1-229 154-375 (482)
18 PRK04537 ATP-dependent RNA hel 100.0 2.1E-34 4.5E-39 253.3 20.8 208 1-229 86-295 (572)
19 KOG0346 RNA helicase [RNA proc 100.0 1.1E-34 2.3E-39 236.3 15.8 208 1-228 95-305 (569)
20 PLN00206 DEAD-box ATP-dependen 100.0 5.6E-33 1.2E-37 242.5 22.0 207 1-229 198-406 (518)
21 PRK11192 ATP-dependent RNA hel 100.0 9E-33 2E-37 237.3 22.8 206 2-229 76-283 (434)
22 PRK01297 ATP-dependent RNA hel 100.0 9.5E-33 2.1E-37 239.3 22.3 208 1-229 164-373 (475)
23 KOG4284 DEAD box protein [Tran 100.0 7.8E-34 1.7E-38 240.5 14.7 207 1-229 95-310 (980)
24 KOG0327 Translation initiation 100.0 2.5E-33 5.5E-38 225.1 14.9 206 1-229 96-301 (397)
25 KOG0348 ATP-dependent RNA heli 100.0 1.7E-33 3.7E-38 234.0 12.4 228 1-229 213-485 (708)
26 KOG0340 ATP-dependent RNA heli 100.0 3.3E-32 7E-37 216.6 14.0 208 1-229 77-292 (442)
27 KOG0341 DEAD-box protein abstr 100.0 4E-33 8.7E-38 224.3 8.4 207 1-229 248-459 (610)
28 PTZ00424 helicase 45; Provisio 100.0 3.3E-30 7.1E-35 219.4 22.3 206 2-229 99-305 (401)
29 KOG0336 ATP-dependent RNA heli 100.0 7.2E-31 1.6E-35 212.6 16.1 204 2-228 297-502 (629)
30 KOG0334 RNA helicase [RNA proc 100.0 2.5E-31 5.3E-36 235.9 14.5 207 1-228 440-650 (997)
31 KOG0347 RNA helicase [RNA proc 100.0 4.4E-32 9.4E-37 226.3 9.0 207 1-229 265-501 (731)
32 KOG0337 ATP-dependent RNA heli 100.0 6.7E-31 1.5E-35 213.1 13.1 205 2-228 93-298 (529)
33 KOG0332 ATP-dependent RNA heli 100.0 2.9E-30 6.2E-35 206.7 12.1 205 1-229 162-368 (477)
34 KOG0329 ATP-dependent RNA heli 100.0 3.7E-30 8.1E-35 197.1 9.4 184 2-201 113-297 (387)
35 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-27 2.7E-32 197.8 13.1 216 1-228 217-470 (620)
36 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.4E-26 7.4E-31 204.4 20.0 198 2-229 64-308 (844)
37 PRK09401 reverse gyrase; Revie 99.9 5.2E-26 1.1E-30 211.9 20.6 196 1-225 125-365 (1176)
38 TIGR03817 DECH_helic helicase/ 99.9 1.2E-24 2.5E-29 196.4 18.2 204 1-229 83-317 (742)
39 PRK09751 putative ATP-dependen 99.9 2.9E-24 6.2E-29 201.7 21.1 190 1-210 39-267 (1490)
40 TIGR01054 rgy reverse gyrase. 99.9 1.2E-23 2.7E-28 196.3 19.6 197 1-227 123-365 (1171)
41 TIGR00614 recQ_fam ATP-depende 99.9 1.6E-23 3.5E-28 181.4 18.9 200 1-229 53-264 (470)
42 PRK10689 transcription-repair 99.9 3.9E-23 8.5E-28 192.5 20.6 195 1-229 651-849 (1147)
43 PRK14701 reverse gyrase; Provi 99.9 3.4E-23 7.3E-28 197.2 20.2 199 1-225 124-367 (1638)
44 TIGR00580 mfd transcription-re 99.9 7.6E-23 1.7E-27 187.0 19.8 196 1-229 502-700 (926)
45 PRK00254 ski2-like helicase; P 99.9 3.3E-23 7.3E-28 187.6 17.3 198 2-229 71-309 (720)
46 PLN03137 ATP-dependent DNA hel 99.9 6.9E-23 1.5E-27 186.5 18.7 202 1-229 502-718 (1195)
47 PRK13767 ATP-dependent helicas 99.9 7.3E-23 1.6E-27 188.0 18.4 217 1-229 86-328 (876)
48 TIGR01389 recQ ATP-dependent D 99.9 2.2E-22 4.8E-27 178.9 19.1 197 2-229 56-262 (591)
49 PRK02362 ski2-like helicase; P 99.9 1.2E-22 2.5E-27 184.5 17.2 185 2-210 70-266 (737)
50 PRK11057 ATP-dependent DNA hel 99.9 4.2E-22 9.1E-27 177.1 20.0 198 1-229 67-274 (607)
51 KOG0349 Putative DEAD-box RNA 99.9 4.7E-23 1E-27 168.7 10.5 211 1-229 288-546 (725)
52 KOG0344 ATP-dependent RNA heli 99.9 4.9E-23 1.1E-27 173.7 8.8 209 1-229 211-426 (593)
53 COG1202 Superfamily II helicas 99.9 9E-22 1.9E-26 166.0 12.4 199 3-229 265-478 (830)
54 PHA02653 RNA helicase NPH-II; 99.9 5.6E-21 1.2E-25 169.5 17.9 196 1-228 224-434 (675)
55 PRK10917 ATP-dependent DNA hel 99.9 1.2E-20 2.5E-25 169.7 19.3 195 1-229 312-519 (681)
56 PRK01172 ski2-like helicase; P 99.9 4.3E-21 9.2E-26 173.1 16.2 200 2-229 68-299 (674)
57 COG1201 Lhr Lhr-like helicases 99.9 3.8E-21 8.2E-26 171.5 15.5 201 1-229 75-292 (814)
58 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.8E-20 3.9E-25 169.8 20.2 197 1-229 47-250 (819)
59 PRK11664 ATP-dependent RNA hel 99.9 1.8E-20 3.9E-25 170.1 19.6 197 1-229 50-253 (812)
60 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-19 2.4E-24 152.2 21.7 225 2-229 42-312 (357)
61 cd00268 DEADc DEAD-box helicas 99.9 3.4E-20 7.4E-25 143.7 15.6 131 2-135 72-202 (203)
62 TIGR01587 cas3_core CRISPR-ass 99.9 2.4E-20 5.1E-25 156.7 15.4 205 2-229 32-262 (358)
63 TIGR00643 recG ATP-dependent D 99.8 1.8E-19 3.9E-24 160.9 18.8 196 1-229 286-496 (630)
64 COG1204 Superfamily II helicas 99.8 6E-20 1.3E-24 165.0 15.3 186 2-209 79-275 (766)
65 PHA02558 uvsW UvsW helicase; P 99.8 1.4E-19 3.1E-24 157.8 13.2 206 2-229 161-382 (501)
66 PF00270 DEAD: DEAD/DEAH box h 99.8 1.5E-18 3.1E-23 130.5 12.6 120 2-123 47-168 (169)
67 COG0514 RecQ Superfamily II DN 99.8 8.7E-19 1.9E-23 151.5 12.4 200 1-229 59-268 (590)
68 COG1205 Distinct helicase fami 99.8 9.5E-18 2.1E-22 152.8 18.7 210 1-229 117-352 (851)
69 KOG0952 DNA/RNA helicase MER3/ 99.8 1.9E-18 4.1E-23 154.1 13.6 199 2-224 167-386 (1230)
70 PRK12898 secA preprotein trans 99.8 1.9E-17 4.1E-22 145.6 14.8 204 1-229 146-511 (656)
71 PRK09200 preprotein translocas 99.7 1.8E-16 4E-21 142.1 17.3 86 1-89 121-212 (790)
72 PRK13766 Hef nuclease; Provisi 99.7 6.5E-16 1.4E-20 141.7 19.9 113 2-118 61-173 (773)
73 TIGR03714 secA2 accessory Sec 99.7 3.1E-16 6.7E-21 139.6 16.8 86 2-89 114-208 (762)
74 PRK11131 ATP-dependent RNA hel 99.7 4.9E-16 1.1E-20 144.8 17.3 183 8-229 131-327 (1294)
75 KOG0351 ATP-dependent DNA heli 99.7 3.7E-16 7.9E-21 142.3 15.7 202 1-229 306-523 (941)
76 TIGR00963 secA preprotein tran 99.7 8.8E-16 1.9E-20 136.1 15.6 84 1-89 99-189 (745)
77 PRK13104 secA preprotein trans 99.7 1.2E-15 2.6E-20 137.1 16.1 84 2-89 126-215 (896)
78 COG1111 MPH1 ERCC4-like helica 99.7 5.2E-15 1.1E-19 124.0 18.5 120 2-126 61-181 (542)
79 COG1197 Mfd Transcription-repa 99.7 2.7E-15 5.8E-20 136.8 15.6 196 1-229 645-843 (1139)
80 PRK12904 preprotein translocas 99.6 1.2E-14 2.6E-19 130.4 16.3 84 2-89 125-214 (830)
81 KOG0951 RNA helicase BRR2, DEA 99.6 5.1E-15 1.1E-19 134.4 13.5 183 2-208 367-567 (1674)
82 TIGR00595 priA primosomal prot 99.6 6E-13 1.3E-17 116.0 20.0 110 1-123 27-145 (505)
83 PRK09694 helicase Cas3; Provis 99.6 2.8E-13 6.1E-18 123.7 18.6 224 2-228 334-600 (878)
84 COG1200 RecG RecG-like helicas 99.6 4.2E-13 9.2E-18 116.7 18.7 195 1-229 313-521 (677)
85 PRK05580 primosome assembly pr 99.6 6.6E-13 1.4E-17 119.6 20.7 113 1-125 192-312 (679)
86 TIGR01967 DEAH_box_HrpA ATP-de 99.5 8.3E-13 1.8E-17 123.8 18.7 156 49-229 154-320 (1283)
87 KOG0352 ATP-dependent DNA heli 99.5 3.5E-14 7.6E-19 116.8 8.1 198 1-229 63-293 (641)
88 KOG0353 ATP-dependent DNA heli 99.5 2.5E-13 5.5E-18 110.4 12.8 204 1-229 136-355 (695)
89 smart00487 DEXDc DEAD-like hel 99.5 1E-12 2.2E-17 100.4 15.5 135 2-138 57-191 (201)
90 COG4581 Superfamily II RNA hel 99.5 2.5E-12 5.3E-17 117.5 15.8 116 2-128 165-280 (1041)
91 TIGR00603 rad25 DNA repair hel 99.5 5.6E-13 1.2E-17 119.0 11.4 205 2-229 301-529 (732)
92 KOG0947 Cytoplasmic exosomal R 99.5 1.2E-12 2.7E-17 116.6 13.1 113 2-129 343-455 (1248)
93 PRK13107 preprotein translocas 99.4 1.5E-12 3.4E-17 117.2 13.6 85 2-90 126-216 (908)
94 PF06862 DUF1253: Protein of u 99.4 1.6E-11 3.5E-16 103.7 17.7 216 2-229 40-338 (442)
95 COG1061 SSL2 DNA or RNA helica 99.4 1.8E-12 3.9E-17 111.5 11.2 205 2-229 83-320 (442)
96 COG1110 Reverse gyrase [DNA re 99.3 2E-11 4.3E-16 110.0 13.3 193 2-224 128-371 (1187)
97 KOG0948 Nuclear exosomal RNA h 99.3 9.5E-12 2.1E-16 108.7 10.6 177 2-210 175-406 (1041)
98 PRK12899 secA preprotein trans 99.3 6.4E-12 1.4E-16 113.6 9.8 83 2-89 138-228 (970)
99 cd00046 DEXDc DEAD-like helica 99.3 7E-11 1.5E-15 85.1 12.8 112 2-117 33-144 (144)
100 PRK04914 ATP-dependent helicas 99.3 7.5E-11 1.6E-15 108.7 15.3 55 172-229 478-532 (956)
101 COG4098 comFA Superfamily II D 99.1 7.6E-09 1.6E-13 83.6 17.5 187 2-226 147-342 (441)
102 PRK11448 hsdR type I restricti 99.1 2.1E-09 4.6E-14 101.2 15.6 112 2-119 466-596 (1123)
103 PRK12906 secA preprotein trans 99.1 1.3E-09 2.9E-14 98.1 12.7 85 1-89 123-213 (796)
104 KOG0354 DEAD-box like helicase 99.0 1.5E-09 3.2E-14 96.3 9.6 120 2-126 109-230 (746)
105 COG1203 CRISPR-associated heli 98.9 1.6E-08 3.5E-13 92.3 11.4 211 2-228 249-477 (733)
106 KOG0950 DNA polymerase theta/e 98.8 6.3E-09 1.4E-13 93.6 6.9 119 4-130 274-398 (1008)
107 PLN03142 Probable chromatin-re 98.8 1.8E-07 3.9E-12 87.3 14.8 106 2-117 222-329 (1033)
108 COG1643 HrpA HrpA-like helicas 98.8 4.7E-07 1E-11 82.7 16.6 196 3-229 98-301 (845)
109 COG4096 HsdR Type I site-speci 98.8 4.3E-08 9.4E-13 87.4 9.6 103 2-121 218-324 (875)
110 TIGR00348 hsdR type I site-spe 98.8 5.5E-07 1.2E-11 81.5 16.7 106 2-118 296-403 (667)
111 PF04851 ResIII: Type III rest 98.6 1.4E-07 2.9E-12 71.4 8.1 110 2-118 53-183 (184)
112 KOG2340 Uncharacterized conser 98.6 8.4E-08 1.8E-12 81.6 6.5 212 2-227 296-588 (698)
113 PF07652 Flavi_DEAD: Flaviviru 98.6 1.8E-07 4E-12 67.2 6.6 103 2-121 36-140 (148)
114 KOG0385 Chromatin remodeling c 98.6 1.8E-06 3.9E-11 76.6 13.7 97 3-108 221-319 (971)
115 PRK12326 preprotein translocas 98.6 2.7E-06 5.8E-11 76.1 14.8 84 2-89 122-211 (764)
116 PRK13103 secA preprotein trans 98.5 4.8E-06 1E-10 76.1 14.0 85 1-89 125-215 (913)
117 KOG0949 Predicted helicase, DE 98.4 6.9E-07 1.5E-11 81.0 6.7 113 2-119 559-673 (1330)
118 KOG0951 RNA helicase BRR2, DEA 98.3 1.7E-05 3.8E-10 73.9 13.1 180 2-210 1189-1382(1674)
119 CHL00122 secA preprotein trans 98.3 2.8E-05 6.1E-10 70.9 14.3 84 2-89 120-209 (870)
120 COG1198 PriA Primosomal protei 98.2 4.1E-05 9E-10 69.2 14.5 169 1-199 247-432 (730)
121 PF00176 SNF2_N: SNF2 family N 98.2 4E-06 8.6E-11 68.5 7.1 110 2-117 61-172 (299)
122 PRK12902 secA preprotein trans 98.2 6.1E-05 1.3E-09 68.9 14.9 84 2-89 129-218 (939)
123 PF14617 CMS1: U3-containing 9 98.1 5E-06 1.1E-10 65.9 5.7 82 2-86 129-211 (252)
124 KOG0922 DEAH-box RNA helicase 98.1 0.00042 9.2E-09 61.1 17.6 156 50-229 139-304 (674)
125 KOG1123 RNA polymerase II tran 98.0 0.00012 2.6E-09 62.6 12.4 106 2-119 348-460 (776)
126 PRK14873 primosome assembly pr 98.0 0.00037 7.9E-09 63.1 16.0 114 1-125 190-311 (665)
127 KOG0920 ATP-dependent RNA heli 97.9 0.001 2.2E-08 61.5 17.0 171 52-229 265-458 (924)
128 COG0556 UvrB Helicase subunit 97.9 0.00022 4.9E-09 61.4 11.9 136 57-226 320-481 (663)
129 KOG4150 Predicted ATP-dependen 97.9 6.9E-05 1.5E-09 65.0 8.9 192 3-211 335-549 (1034)
130 KOG0389 SNF2 family DNA-depend 97.9 3.8E-05 8.2E-10 68.6 7.1 116 3-125 452-571 (941)
131 KOG0387 Transcription-coupled 97.8 0.0013 2.8E-08 59.3 15.5 53 172-227 529-583 (923)
132 PRK12903 secA preprotein trans 97.8 0.00065 1.4E-08 62.2 13.8 83 3-89 123-211 (925)
133 PF02399 Herpes_ori_bp: Origin 97.8 0.0015 3.2E-08 59.5 15.9 206 2-227 81-318 (824)
134 KOG0384 Chromodomain-helicase 97.7 0.00049 1.1E-08 64.5 11.7 111 3-124 424-543 (1373)
135 TIGR00631 uvrb excinuclease AB 97.7 0.00032 6.9E-09 63.5 9.7 54 171-228 424-479 (655)
136 cd00079 HELICc Helicase superf 97.6 0.00013 2.9E-09 51.7 5.7 61 163-228 3-65 (131)
137 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00033 7.1E-09 62.9 9.2 40 50-90 181-220 (636)
138 KOG0952 DNA/RNA helicase MER3/ 97.6 3.6E-05 7.8E-10 70.7 2.3 192 2-210 976-1176(1230)
139 PRK05298 excinuclease ABC subu 97.4 0.00084 1.8E-08 61.0 9.2 53 172-228 429-483 (652)
140 KOG1000 Chromatin remodeling p 97.4 0.016 3.5E-07 50.0 15.8 212 2-228 244-529 (689)
141 PRK07246 bifunctional ATP-depe 97.4 0.0011 2.5E-08 61.6 9.7 38 51-90 413-450 (820)
142 KOG0925 mRNA splicing factor A 97.4 0.0029 6.3E-08 54.3 10.7 144 57-223 133-294 (699)
143 KOG0923 mRNA splicing factor A 97.4 0.0039 8.4E-08 55.4 11.8 153 52-228 356-519 (902)
144 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0024 5.2E-08 51.4 9.2 84 2-89 121-210 (266)
145 KOG0926 DEAH-box RNA helicase 97.2 0.0026 5.6E-08 57.6 8.7 140 50-210 348-504 (1172)
146 PRK12900 secA preprotein trans 97.0 0.00081 1.8E-08 62.4 4.8 96 109-225 535-632 (1025)
147 KOG0391 SNF2 family DNA-depend 96.9 0.0023 5E-08 60.1 6.7 104 3-116 669-774 (1958)
148 TIGR01407 dinG_rel DnaQ family 96.9 0.0061 1.3E-07 57.3 9.8 39 51-90 416-454 (850)
149 COG0610 Type I site-specific r 96.8 0.01 2.2E-07 56.3 10.1 108 2-118 306-414 (962)
150 KOG0390 DNA repair protein, SN 96.7 0.03 6.5E-07 51.2 11.5 128 2-137 301-436 (776)
151 TIGR02562 cas3_yersinia CRISPR 96.6 0.0031 6.8E-08 59.0 5.1 71 52-123 563-640 (1110)
152 KOG0392 SNF2 family DNA-depend 96.6 0.011 2.4E-07 55.9 8.4 111 2-123 1034-1145(1549)
153 KOG4439 RNA polymerase II tran 96.3 0.0054 1.2E-07 54.8 4.1 85 2-90 386-477 (901)
154 PF13872 AAA_34: P-loop contai 96.2 0.015 3.3E-07 47.3 6.1 115 2-124 94-227 (303)
155 TIGR00596 rad1 DNA repair prot 96.0 0.039 8.4E-07 51.3 8.5 66 52-118 8-73 (814)
156 KOG0388 SNF2 family DNA-depend 95.7 0.017 3.7E-07 52.0 4.6 105 3-117 621-733 (1185)
157 PRK10689 transcription-repair 95.6 0.096 2.1E-06 50.8 9.8 78 1-88 811-891 (1147)
158 KOG1002 Nucleotide excision re 95.4 0.059 1.3E-06 46.7 6.8 83 2-90 234-330 (791)
159 TIGR00580 mfd transcription-re 95.3 0.14 3.1E-06 48.5 9.5 78 1-88 662-742 (926)
160 KOG0924 mRNA splicing factor A 95.2 0.62 1.3E-05 42.3 12.7 149 53-228 447-610 (1042)
161 PRK15483 type III restriction- 94.6 0.25 5.4E-06 46.7 9.2 114 2-119 92-240 (986)
162 TIGR00631 uvrb excinuclease AB 93.9 1.7 3.7E-05 39.8 12.9 112 2-125 445-561 (655)
163 KOG0386 Chromatin remodeling c 93.9 0.092 2E-06 49.1 4.7 81 3-90 448-529 (1157)
164 COG4889 Predicted helicase [Ge 93.5 0.17 3.7E-06 47.0 5.6 86 2-90 209-318 (1518)
165 KOG0953 Mitochondrial RNA heli 93.4 0.29 6.4E-06 43.1 6.7 172 3-228 219-394 (700)
166 COG1197 Mfd Transcription-repa 93.4 0.45 9.8E-06 45.5 8.3 78 1-88 805-885 (1139)
167 TIGR00643 recG ATP-dependent D 93.2 1.3 2.9E-05 40.4 10.9 81 1-88 450-538 (630)
168 KOG1001 Helicase-like transcri 93.1 0.34 7.3E-06 44.3 6.9 99 3-116 193-291 (674)
169 PRK04837 ATP-dependent RNA hel 92.9 0.58 1.3E-05 40.4 8.0 71 2-84 258-331 (423)
170 PF06733 DEAD_2: DEAD_2; Inte 92.7 0.068 1.5E-06 40.2 1.8 41 50-91 118-160 (174)
171 PRK10917 ATP-dependent DNA hel 92.7 1.6 3.5E-05 40.2 10.9 81 1-88 473-561 (681)
172 PRK05580 primosome assembly pr 92.7 2.6 5.5E-05 39.0 12.1 72 10-91 437-513 (679)
173 PRK04537 ATP-dependent RNA hel 92.6 1 2.2E-05 40.7 9.3 73 1-85 259-334 (572)
174 TIGR00595 priA primosomal prot 92.6 2 4.4E-05 38.1 11.0 69 13-91 272-345 (505)
175 PF09848 DUF2075: Uncharacteri 92.4 0.74 1.6E-05 38.8 7.8 75 28-103 31-117 (352)
176 KOG3089 Predicted DEAD-box-con 92.3 0.29 6.3E-06 37.9 4.6 41 42-83 187-227 (271)
177 COG0556 UvrB Helicase subunit 92.3 2.1 4.6E-05 37.9 10.3 110 2-126 449-566 (663)
178 cd01524 RHOD_Pyr_redox Member 91.9 0.25 5.3E-06 32.6 3.5 38 186-227 50-87 (90)
179 TIGR00614 recQ_fam ATP-depende 91.5 1.3 2.7E-05 39.0 8.5 72 2-85 229-303 (470)
180 PRK11192 ATP-dependent RNA hel 91.5 1 2.3E-05 38.9 7.9 69 2-82 248-319 (434)
181 PRK11747 dinG ATP-dependent DN 91.4 0.24 5.2E-06 45.7 3.9 41 50-90 218-260 (697)
182 PRK08074 bifunctional ATP-depe 91.3 0.21 4.6E-06 47.6 3.7 40 50-90 430-469 (928)
183 smart00488 DEXDc2 DEAD-like he 91.2 0.19 4.1E-06 41.1 2.9 40 50-90 210-250 (289)
184 smart00489 DEXDc3 DEAD-like he 91.2 0.19 4.1E-06 41.1 2.9 40 50-90 210-250 (289)
185 COG0513 SrmB Superfamily II DN 91.0 1.6 3.4E-05 38.9 8.6 68 2-81 276-346 (513)
186 PRK10590 ATP-dependent RNA hel 90.9 1.9 4E-05 37.7 8.9 69 2-82 248-319 (456)
187 cd01523 RHOD_Lact_B Member of 90.6 0.41 9E-06 32.1 3.7 38 186-227 60-97 (100)
188 cd00079 HELICc Helicase superf 90.5 3.9 8.5E-05 28.3 8.9 73 2-86 31-106 (131)
189 PTZ00110 helicase; Provisional 90.4 1.9 4.1E-05 38.7 8.7 69 2-82 380-451 (545)
190 smart00450 RHOD Rhodanese Homo 90.3 0.79 1.7E-05 30.0 4.9 39 184-226 53-92 (100)
191 PRK11776 ATP-dependent RNA hel 89.9 2 4.3E-05 37.6 8.3 72 2-85 245-319 (460)
192 KOG0333 U5 snRNP-like RNA heli 89.9 1.9 4.2E-05 38.0 7.8 68 2-81 520-590 (673)
193 COG0553 HepA Superfamily II DN 89.8 0.85 1.8E-05 42.9 6.3 86 2-91 393-487 (866)
194 PRK01297 ATP-dependent RNA hel 89.8 2.6 5.6E-05 37.0 8.9 70 2-83 338-410 (475)
195 KOG0331 ATP-dependent RNA heli 89.7 1.8 3.8E-05 38.3 7.6 68 2-81 344-414 (519)
196 PLN00206 DEAD-box ATP-dependen 89.7 2.4 5.2E-05 37.7 8.7 71 2-83 370-443 (518)
197 KOG0989 Replication factor C, 89.6 0.82 1.8E-05 37.5 5.1 58 73-131 126-186 (346)
198 PF05621 TniB: Bacterial TniB 89.5 0.41 8.9E-06 39.2 3.4 37 74-110 143-181 (302)
199 PRK11634 ATP-dependent RNA hel 89.4 2.7 5.7E-05 38.5 8.8 70 1-82 247-319 (629)
200 PRK11057 ATP-dependent DNA hel 89.1 2.4 5.1E-05 38.6 8.3 69 2-82 239-310 (607)
201 COG4098 comFA Superfamily II D 89.1 4.3 9.2E-05 34.0 8.8 112 2-123 308-422 (441)
202 PRK12900 secA preprotein trans 88.9 0.79 1.7E-05 43.4 5.1 82 4-89 184-271 (1025)
203 PRK05642 DNA replication initi 88.7 1.1 2.4E-05 35.4 5.3 69 50-119 72-141 (234)
204 COG1198 PriA Primosomal protei 88.3 5.6 0.00012 36.9 10.0 71 12-92 493-568 (730)
205 cd01529 4RHOD_Repeats Member o 88.2 0.93 2E-05 30.1 4.0 38 185-226 54-92 (96)
206 PTZ00424 helicase 45; Provisio 87.9 3.7 8E-05 35.0 8.4 71 2-84 270-343 (401)
207 TIGR01389 recQ ATP-dependent D 87.9 3.6 7.7E-05 37.3 8.6 69 2-82 227-298 (591)
208 PRK11664 ATP-dependent RNA hel 87.9 3 6.4E-05 39.4 8.2 71 2-81 215-288 (812)
209 KOG0332 ATP-dependent RNA heli 87.9 3.4 7.3E-05 35.0 7.6 117 1-131 332-458 (477)
210 PRK12899 secA preprotein trans 87.5 3.6 7.9E-05 39.0 8.4 97 108-225 504-602 (970)
211 COG1200 RecG RecG-like helicas 87.4 1.7 3.8E-05 39.4 6.1 81 1-88 475-563 (677)
212 TIGR01054 rgy reverse gyrase. 87.0 2.4 5.3E-05 41.6 7.4 72 2-82 329-404 (1171)
213 PHA02653 RNA helicase NPH-II; 87.0 2.8 6E-05 38.6 7.4 70 2-81 398-469 (675)
214 PRK13767 ATP-dependent helicas 87.0 5.2 0.00011 38.1 9.4 76 2-84 287-366 (876)
215 cd01526 RHOD_ThiF Member of th 86.9 0.76 1.7E-05 32.2 3.1 38 185-226 70-109 (122)
216 TIGR01970 DEAH_box_HrpB ATP-de 86.8 3.8 8.3E-05 38.6 8.3 71 2-81 212-285 (819)
217 PRK09401 reverse gyrase; Revie 86.7 1.5 3.3E-05 42.9 5.9 71 2-82 331-405 (1176)
218 PRK05298 excinuclease ABC subu 86.5 27 0.00058 32.2 14.1 75 2-88 449-526 (652)
219 TIGR01407 dinG_rel DnaQ family 86.2 6.9 0.00015 37.2 9.8 24 186-209 673-696 (850)
220 cd01534 4RHOD_Repeat_3 Member 86.0 1.3 2.9E-05 29.3 3.8 37 186-226 55-91 (95)
221 PF02463 SMC_N: RecF/RecN/SMC 86.0 0.99 2.2E-05 35.0 3.6 40 75-114 157-196 (220)
222 cd01521 RHOD_PspE2 Member of t 86.0 1.3 2.8E-05 30.3 3.8 37 186-226 63-101 (110)
223 PF05127 Helicase_RecD: Helica 85.9 0.79 1.7E-05 34.6 2.8 96 2-118 29-124 (177)
224 cd01518 RHOD_YceA Member of th 85.7 1.9 4.2E-05 28.8 4.5 38 185-226 59-97 (101)
225 PF00308 Bac_DnaA: Bacterial d 85.6 5.2 0.00011 31.2 7.5 114 5-120 12-143 (219)
226 PF03354 Terminase_1: Phage Te 85.6 1.9 4.2E-05 37.9 5.5 102 2-113 57-159 (477)
227 cd01527 RHOD_YgaP Member of th 85.4 1.3 2.9E-05 29.5 3.6 38 185-226 52-90 (99)
228 PF13401 AAA_22: AAA domain; P 85.0 3.2 7E-05 28.9 5.6 33 78-113 89-122 (131)
229 TIGR01587 cas3_core CRISPR-ass 84.8 4.2 9.1E-05 34.1 7.1 71 2-83 225-302 (358)
230 KOG0328 Predicted ATP-dependen 84.5 6.2 0.00013 32.2 7.3 69 1-81 268-339 (400)
231 cd01533 4RHOD_Repeat_2 Member 84.4 1.5 3.2E-05 29.9 3.5 37 186-226 65-103 (109)
232 KOG0344 ATP-dependent RNA heli 84.3 13 0.00028 33.2 9.8 74 2-86 390-466 (593)
233 cd01519 RHOD_HSP67B2 Member of 84.2 1.3 2.9E-05 29.8 3.1 37 186-226 65-102 (106)
234 cd00561 CobA_CobO_BtuR ATP:cor 84.1 2.5 5.4E-05 31.3 4.7 53 74-126 93-147 (159)
235 cd01532 4RHOD_Repeat_1 Member 84.0 2 4.3E-05 28.3 3.9 37 186-226 49-88 (92)
236 TIGR03817 DECH_helic helicase/ 83.9 7.1 0.00015 36.5 8.6 78 1-85 273-356 (742)
237 PRK08727 hypothetical protein; 83.8 2.6 5.6E-05 33.3 5.1 70 49-119 67-138 (233)
238 PF13173 AAA_14: AAA domain 83.7 2.3 5E-05 30.0 4.3 38 76-116 61-98 (128)
239 cd01444 GlpE_ST GlpE sulfurtra 83.7 1.9 4E-05 28.4 3.7 37 186-226 55-92 (96)
240 PRK06893 DNA replication initi 83.6 2.6 5.6E-05 33.2 5.0 70 50-120 66-137 (229)
241 KOG1015 Transcription regulato 83.5 12 0.00025 35.9 9.5 115 2-121 731-864 (1567)
242 cd01520 RHOD_YbbB Member of th 83.4 1.4 3.1E-05 31.1 3.2 37 186-226 85-122 (128)
243 PRK12422 chromosomal replicati 83.2 19 0.0004 31.6 10.4 73 50-122 168-250 (445)
244 PF12340 DUF3638: Protein of u 83.1 4.2 9E-05 32.1 5.8 88 2-90 73-186 (229)
245 KOG0354 DEAD-box like helicase 82.8 2 4.3E-05 39.5 4.5 52 172-224 394-449 (746)
246 PRK12901 secA preprotein trans 82.7 2.2 4.8E-05 40.8 4.8 82 4-89 215-303 (1112)
247 PRK14701 reverse gyrase; Provi 82.7 4.3 9.2E-05 41.3 7.0 71 2-82 333-407 (1638)
248 cd00158 RHOD Rhodanese Homolog 82.3 2.9 6.3E-05 26.8 4.2 39 184-226 47-86 (89)
249 COG1199 DinG Rad3-related DNA 82.1 1.3 2.9E-05 40.5 3.2 40 50-90 193-234 (654)
250 cd01449 TST_Repeat_2 Thiosulfa 82.0 1.6 3.4E-05 30.1 2.9 46 177-226 65-114 (118)
251 cd01448 TST_Repeat_1 Thiosulfa 81.3 2.7 6E-05 29.1 4.0 37 186-226 78-116 (122)
252 cd01447 Polysulfide_ST Polysul 81.2 1.8 3.8E-05 29.0 2.8 37 186-226 60-97 (103)
253 cd01528 RHOD_2 Member of the R 81.2 2.6 5.6E-05 28.2 3.7 37 186-226 57-94 (101)
254 PRK09694 helicase Cas3; Provis 81.1 10 0.00023 36.1 8.6 75 2-86 563-648 (878)
255 PRK08084 DNA replication initi 81.0 13 0.00029 29.3 8.2 67 50-118 72-141 (235)
256 PRK05320 rhodanese superfamily 80.7 3.7 8E-05 33.0 4.9 38 185-226 173-211 (257)
257 PHA02544 44 clamp loader, smal 80.4 3.2 7E-05 34.1 4.7 41 75-115 99-139 (316)
258 PF13086 AAA_11: AAA domain; P 80.4 2.7 5.9E-05 32.4 4.1 35 50-89 169-205 (236)
259 TIGR00708 cobA cob(I)alamin ad 80.1 3.2 6.9E-05 31.2 4.1 54 74-127 95-150 (173)
260 KOG0964 Structural maintenance 80.1 1.2 2.6E-05 41.8 2.1 53 77-131 1120-1172(1200)
261 TIGR00604 rad3 DNA repair heli 79.8 1.2 2.6E-05 41.3 2.1 39 51-90 195-234 (705)
262 PF02302 PTS_IIB: PTS system, 79.4 8.6 0.00019 25.0 5.7 56 2-62 2-58 (90)
263 TIGR03420 DnaA_homol_Hda DnaA 79.3 27 0.00058 27.0 9.5 45 74-118 88-133 (226)
264 PRK05728 DNA polymerase III su 79.1 5 0.00011 29.1 4.8 45 166-210 6-52 (142)
265 PRK12901 secA preprotein trans 79.0 2.9 6.3E-05 40.0 4.3 96 109-225 565-662 (1112)
266 cd01525 RHOD_Kc Member of the 78.8 3.9 8.5E-05 27.4 4.0 36 187-226 65-101 (105)
267 KOG0991 Replication factor C, 78.5 4.2 9.1E-05 32.3 4.4 43 73-116 110-152 (333)
268 PLN03137 ATP-dependent DNA hel 77.9 13 0.00028 36.4 8.1 68 2-81 683-753 (1195)
269 cd01522 RHOD_1 Member of the R 77.9 4.6 0.0001 28.0 4.2 40 185-228 62-102 (117)
270 PRK07413 hypothetical protein; 77.6 26 0.00056 30.0 9.1 54 74-127 123-178 (382)
271 PRK06646 DNA polymerase III su 77.5 6.9 0.00015 28.8 5.1 46 165-210 5-52 (154)
272 PRK05986 cob(I)alamin adenolsy 76.9 5.1 0.00011 30.7 4.4 54 74-127 113-168 (191)
273 PRK14873 primosome assembly pr 76.1 4.6 9.9E-05 37.2 4.6 56 171-229 170-228 (665)
274 KOG0347 RNA helicase [RNA proc 75.9 3.3 7.1E-05 36.8 3.5 38 190-227 266-303 (731)
275 COG1435 Tdk Thymidine kinase [ 75.9 11 0.00024 28.9 5.9 74 28-104 32-109 (201)
276 PRK07414 cob(I)yrinic acid a,c 75.7 5.6 0.00012 30.1 4.3 53 74-126 113-167 (178)
277 KOG2170 ATPase of the AAA+ sup 75.5 4 8.8E-05 33.5 3.7 130 74-210 176-322 (344)
278 cd01535 4RHOD_Repeat_4 Member 75.4 8.6 0.00019 27.9 5.2 47 176-226 37-85 (145)
279 PRK10287 thiosulfate:cyanide s 75.2 5.7 0.00012 27.1 3.9 37 186-226 59-95 (104)
280 COG3587 Restriction endonuclea 75.2 17 0.00036 34.3 7.7 40 79-122 208-247 (985)
281 COG0653 SecA Preprotein transl 75.0 6.6 0.00014 36.8 5.3 82 4-89 126-213 (822)
282 COG1110 Reverse gyrase [DNA re 74.9 8 0.00017 37.1 5.8 74 2-85 338-415 (1187)
283 KOG0330 ATP-dependent RNA heli 74.5 9.5 0.00021 32.5 5.7 52 176-227 118-169 (476)
284 TIGR00596 rad1 DNA repair prot 74.4 6 0.00013 37.3 5.0 40 170-209 267-317 (814)
285 PRK11131 ATP-dependent RNA hel 74.0 15 0.00032 36.5 7.6 71 2-81 289-360 (1294)
286 KOG0933 Structural maintenance 73.9 4 8.6E-05 38.7 3.6 78 30-116 1067-1144(1174)
287 PF05876 Terminase_GpA: Phage 73.9 8.9 0.00019 34.6 5.8 80 2-90 65-148 (557)
288 PRK04914 ATP-dependent helicas 73.7 22 0.00049 34.3 8.6 71 2-83 496-571 (956)
289 PRK08903 DnaA regulatory inact 73.6 40 0.00087 26.1 10.7 64 50-119 69-133 (227)
290 PF13177 DNA_pol3_delta2: DNA 73.5 6.4 0.00014 29.1 4.2 68 50-118 66-143 (162)
291 PF02572 CobA_CobO_BtuR: ATP:c 73.3 6.2 0.00013 29.7 4.0 53 74-126 94-148 (172)
292 PRK14087 dnaA chromosomal repl 73.3 29 0.00063 30.4 8.7 68 51-118 171-250 (450)
293 PRK13766 Hef nuclease; Provisi 73.3 25 0.00054 33.0 8.9 83 2-100 368-461 (773)
294 TIGR03158 cas3_cyano CRISPR-as 72.7 14 0.0003 31.2 6.5 68 2-83 275-342 (357)
295 TIGR01967 DEAH_box_HrpA ATP-de 71.9 19 0.00042 35.8 7.8 71 2-81 282-353 (1283)
296 PLN03025 replication factor C 71.8 6.6 0.00014 32.5 4.3 39 75-114 98-136 (319)
297 PRK01415 hypothetical protein; 71.7 7.5 0.00016 31.1 4.4 38 185-226 169-207 (247)
298 TIGR02981 phageshock_pspE phag 71.5 7.8 0.00017 26.2 3.9 37 186-226 57-93 (101)
299 PF04364 DNA_pol3_chi: DNA pol 71.2 9.5 0.00021 27.4 4.5 45 166-210 6-52 (137)
300 cd00133 PTS_IIB PTS_IIB: subun 71.2 22 0.00048 22.1 6.6 53 2-60 2-55 (84)
301 PRK07764 DNA polymerase III su 71.1 6.6 0.00014 37.1 4.5 39 75-114 119-157 (824)
302 PRK06526 transposase; Provisio 71.1 15 0.00032 29.5 6.0 70 49-118 124-202 (254)
303 PRK14958 DNA polymerase III su 70.9 5.4 0.00012 35.5 3.7 39 75-114 118-156 (509)
304 PRK06835 DNA replication prote 70.8 62 0.0013 27.1 11.3 110 9-119 162-290 (329)
305 PLN02160 thiosulfate sulfurtra 70.7 7.4 0.00016 27.9 3.8 37 186-226 80-117 (136)
306 PHA02558 uvsW UvsW helicase; P 70.6 24 0.00053 31.3 7.8 71 2-83 347-420 (501)
307 COG2109 BtuR ATP:corrinoid ade 70.3 13 0.00029 28.3 5.2 53 75-127 121-175 (198)
308 cd01530 Cdc25 Cdc25 phosphatas 70.2 6.6 0.00014 27.4 3.4 42 186-227 67-118 (121)
309 cd00268 DEADc DEAD-box helicas 70.0 13 0.00028 28.2 5.3 42 186-227 68-109 (203)
310 COG1199 DinG Rad3-related DNA 69.9 43 0.00093 30.8 9.5 34 176-210 469-502 (654)
311 PRK07003 DNA polymerase III su 69.1 6.3 0.00014 36.8 3.8 39 75-114 118-156 (830)
312 PF00270 DEAD: DEAD/DEAH box h 68.6 23 0.0005 25.7 6.3 41 186-226 43-83 (169)
313 PRK12323 DNA polymerase III su 68.6 7.9 0.00017 35.6 4.2 41 74-115 122-162 (700)
314 KOG0921 Dosage compensation co 67.8 5.9 0.00013 37.5 3.3 61 54-118 475-536 (1282)
315 TIGR00604 rad3 DNA repair heli 67.3 28 0.0006 32.5 7.7 25 186-210 521-545 (705)
316 PRK00162 glpE thiosulfate sulf 67.1 6.8 0.00015 26.5 2.9 37 186-226 57-94 (108)
317 PRK09751 putative ATP-dependen 66.8 41 0.00088 34.2 8.9 76 2-84 247-353 (1490)
318 COG1196 Smc Chromosome segrega 66.8 6.4 0.00014 38.8 3.6 79 49-129 1047-1139(1163)
319 KOG0990 Replication factor C, 66.4 5.9 0.00013 32.9 2.8 38 76-114 131-168 (360)
320 PF13604 AAA_30: AAA domain; P 65.7 58 0.0013 24.8 10.0 39 74-116 91-130 (196)
321 TIGR03865 PQQ_CXXCW PQQ-depend 64.9 10 0.00022 28.1 3.6 38 185-226 114-153 (162)
322 TIGR00362 DnaA chromosomal rep 64.8 46 0.00099 28.6 8.1 67 51-118 166-242 (405)
323 PF00581 Rhodanese: Rhodanese- 64.0 9 0.00019 25.7 3.1 37 186-226 66-108 (113)
324 PF13245 AAA_19: Part of AAA d 63.7 15 0.00033 23.3 3.8 52 167-223 16-74 (76)
325 PF02562 PhoH: PhoH-like prote 63.5 13 0.00027 28.9 4.0 35 78-116 121-155 (205)
326 PHA03368 DNA packaging termina 63.4 28 0.00061 32.2 6.6 100 2-116 287-389 (738)
327 PF13514 AAA_27: AAA domain 63.3 16 0.00034 36.0 5.6 54 80-135 1055-1108(1111)
328 PF15586 Imm47: Immunity prote 63.3 7.9 0.00017 27.0 2.6 35 50-86 43-77 (116)
329 PRK08181 transposase; Validate 63.0 43 0.00093 27.2 7.2 69 49-118 132-209 (269)
330 KOG1132 Helicase of the DEAD s 62.9 7.1 0.00015 36.6 2.9 40 50-90 221-261 (945)
331 COG4555 NatA ABC-type Na+ tran 62.6 18 0.00039 28.2 4.6 54 74-127 149-202 (245)
332 PRK10536 hypothetical protein; 62.3 14 0.0003 29.9 4.1 33 78-114 178-210 (262)
333 COG0593 DnaA ATPase involved i 62.2 55 0.0012 28.3 7.9 117 3-122 89-223 (408)
334 PRK00142 putative rhodanese-re 62.0 14 0.0003 30.7 4.3 38 185-226 169-207 (314)
335 cd05563 PTS_IIB_ascorbate PTS_ 61.8 35 0.00076 21.9 5.5 52 2-60 2-54 (86)
336 KOG0335 ATP-dependent RNA heli 61.8 33 0.00071 30.2 6.5 71 2-84 340-413 (482)
337 cd05566 PTS_IIB_galactitol PTS 61.2 39 0.00086 21.8 5.7 54 2-60 3-57 (89)
338 PF00004 AAA: ATPase family as 61.0 19 0.00041 24.8 4.4 16 77-92 59-74 (132)
339 PHA02533 17 large terminase pr 60.8 32 0.0007 30.9 6.6 102 2-117 107-210 (534)
340 PRK11747 dinG ATP-dependent DN 60.7 67 0.0014 30.0 8.8 31 178-210 527-557 (697)
341 COG0607 PspE Rhodanese-related 60.6 10 0.00022 25.4 2.9 38 185-226 59-97 (110)
342 PRK06620 hypothetical protein; 60.5 13 0.00028 28.9 3.7 105 3-119 18-124 (214)
343 PRK10875 recD exonuclease V su 60.3 48 0.001 30.4 7.7 39 74-116 263-301 (615)
344 TIGR00678 holB DNA polymerase 60.2 12 0.00026 28.2 3.4 39 74-113 94-132 (188)
345 PRK04132 replication factor C 60.1 22 0.00048 33.8 5.6 38 76-114 630-667 (846)
346 TIGR03117 cas_csf4 CRISPR-asso 59.8 81 0.0018 29.1 9.0 45 176-225 460-504 (636)
347 PRK14960 DNA polymerase III su 59.7 17 0.00037 33.6 4.6 39 75-114 117-155 (702)
348 PRK01172 ski2-like helicase; P 59.6 42 0.00091 31.0 7.4 79 1-87 238-339 (674)
349 PRK00440 rfc replication facto 59.4 32 0.00069 28.1 6.1 39 75-114 101-139 (319)
350 cd01445 TST_Repeats Thiosulfat 58.8 16 0.00035 26.2 3.7 46 177-226 82-134 (138)
351 PRK04195 replication factor C 58.4 1.3E+02 0.0029 26.5 11.7 80 10-90 21-112 (482)
352 PRK00149 dnaA chromosomal repl 58.4 9.4 0.0002 33.3 2.9 68 51-119 178-255 (450)
353 COG2812 DnaX DNA polymerase II 58.2 7.3 0.00016 34.6 2.1 25 74-98 117-141 (515)
354 PF05707 Zot: Zonular occluden 58.2 14 0.0003 28.2 3.4 51 76-127 79-135 (193)
355 PRK09112 DNA polymerase III su 57.9 15 0.00032 31.1 3.8 39 75-114 140-178 (351)
356 COG4408 Uncharacterized protei 57.6 1.2E+02 0.0025 25.7 14.2 132 3-139 7-147 (431)
357 PRK14956 DNA polymerase III su 57.2 12 0.00027 33.0 3.3 18 75-92 120-137 (484)
358 PRK14952 DNA polymerase III su 57.1 23 0.00049 32.2 5.1 40 74-114 116-155 (584)
359 COG1203 CRISPR-associated heli 57.0 37 0.00081 31.8 6.6 53 2-59 443-502 (733)
360 PRK08074 bifunctional ATP-depe 57.0 64 0.0014 31.2 8.3 25 186-210 751-775 (928)
361 cd00009 AAA The AAA+ (ATPases 56.8 17 0.00036 25.2 3.5 30 74-104 82-111 (151)
362 COG2927 HolC DNA polymerase II 56.6 34 0.00074 24.9 4.9 46 165-210 5-52 (144)
363 PRK08451 DNA polymerase III su 56.5 17 0.00036 32.7 4.0 40 74-114 115-154 (535)
364 PRK14951 DNA polymerase III su 56.5 18 0.00039 33.1 4.3 39 75-114 123-161 (618)
365 PRK08691 DNA polymerase III su 56.5 17 0.00037 33.6 4.2 39 75-114 118-156 (709)
366 PRK11493 sseA 3-mercaptopyruva 56.4 25 0.00053 28.6 4.8 47 176-226 217-267 (281)
367 PRK14961 DNA polymerase III su 56.1 19 0.0004 30.5 4.2 39 75-114 118-156 (363)
368 COG4626 Phage terminase-like p 56.0 38 0.00083 30.3 6.1 100 2-115 121-223 (546)
369 PRK04296 thymidine kinase; Pro 55.7 17 0.00038 27.5 3.6 53 56-116 62-114 (190)
370 PRK14964 DNA polymerase III su 55.5 23 0.00049 31.5 4.7 62 51-113 84-152 (491)
371 PRK14969 DNA polymerase III su 55.3 14 0.00031 33.1 3.5 40 74-114 117-156 (527)
372 KOG0741 AAA+-type ATPase [Post 54.5 47 0.001 29.9 6.3 108 28-140 255-397 (744)
373 PRK14949 DNA polymerase III su 54.5 19 0.00042 34.4 4.2 38 75-113 118-155 (944)
374 TIGR01448 recD_rel helicase, p 54.5 20 0.00044 33.4 4.5 38 75-116 415-452 (720)
375 PF12846 AAA_10: AAA-like doma 54.1 16 0.00036 29.3 3.5 32 75-106 219-251 (304)
376 PRK05597 molybdopterin biosynt 53.9 19 0.00041 30.4 3.9 37 186-226 313-350 (355)
377 cd00046 DEXDc DEAD-like helica 53.9 47 0.001 22.5 5.5 56 171-227 10-69 (144)
378 CHL00181 cbbX CbbX; Provisiona 53.9 23 0.0005 29.0 4.3 48 78-125 124-177 (287)
379 cd01443 Cdc25_Acr2p Cdc25 enzy 53.7 38 0.00081 23.0 4.8 39 185-227 64-110 (113)
380 PRK08116 hypothetical protein; 53.4 60 0.0013 26.2 6.6 70 50-120 141-224 (268)
381 PRK10869 recombination and rep 53.3 20 0.00042 32.4 4.0 44 76-121 452-495 (553)
382 PF01182 Glucosamine_iso: Gluc 53.3 26 0.00056 26.9 4.2 58 9-86 3-62 (199)
383 PHA03333 putative ATPase subun 53.1 1.5E+02 0.0032 27.8 9.4 23 2-24 219-241 (752)
384 PRK14974 cell division protein 53.1 32 0.00069 28.9 5.0 55 75-129 221-276 (336)
385 TIGR02881 spore_V_K stage V sp 52.9 33 0.00071 27.4 5.0 46 78-123 107-157 (261)
386 TIGR01198 pgl 6-phosphoglucono 52.9 55 0.0012 25.8 6.2 35 172-208 168-202 (233)
387 PF00271 Helicase_C: Helicase 52.8 53 0.0012 20.3 5.8 51 28-85 7-60 (78)
388 TIGR01447 recD exodeoxyribonuc 52.7 23 0.00051 32.2 4.4 39 74-116 257-295 (586)
389 cd01446 DSP_MapKP N-terminal r 52.7 37 0.0008 23.8 4.8 42 184-226 72-122 (132)
390 KOG0341 DEAD-box protein abstr 52.3 60 0.0013 28.0 6.4 85 2-106 424-511 (610)
391 PF13304 AAA_21: AAA domain; P 52.2 23 0.0005 27.2 4.0 40 78-119 259-299 (303)
392 PRK14957 DNA polymerase III su 52.0 20 0.00043 32.3 3.8 40 74-114 117-156 (546)
393 PRK07994 DNA polymerase III su 51.9 18 0.00038 33.3 3.5 38 75-113 118-155 (647)
394 COG2909 MalT ATP-dependent tra 51.2 24 0.00052 33.3 4.2 41 78-118 131-171 (894)
395 COG0514 RecQ Superfamily II DN 50.1 62 0.0013 29.5 6.5 53 2-59 233-288 (590)
396 PF01637 Arch_ATPase: Archaeal 50.0 31 0.00068 26.3 4.4 40 78-117 120-165 (234)
397 TIGR02621 cas3_GSU0051 CRISPR- 49.9 58 0.0012 31.1 6.5 37 1-44 274-310 (844)
398 cd01120 RecA-like_NTPases RecA 49.9 21 0.00045 25.5 3.2 45 74-118 83-137 (165)
399 PRK12402 replication factor C 49.6 25 0.00053 29.0 3.9 39 75-114 124-162 (337)
400 TIGR00634 recN DNA repair prot 49.4 24 0.00051 31.9 4.0 85 76-184 462-546 (563)
401 COG3973 Superfamily I DNA and 49.0 67 0.0015 29.4 6.5 38 173-210 641-678 (747)
402 PRK04841 transcriptional regul 49.0 24 0.00053 33.5 4.2 42 77-118 122-163 (903)
403 COG0497 RecN ATPase involved i 48.7 34 0.00073 30.8 4.6 85 76-184 453-537 (557)
404 PRK09200 preprotein translocas 48.3 74 0.0016 30.2 7.0 53 2-59 431-484 (790)
405 PRK14965 DNA polymerase III su 48.3 32 0.0007 31.2 4.6 40 74-114 117-156 (576)
406 PRK09111 DNA polymerase III su 48.2 35 0.00076 31.1 4.8 40 74-114 130-169 (598)
407 PRK07413 hypothetical protein; 48.2 33 0.00071 29.4 4.4 53 75-127 304-359 (382)
408 PRK08058 DNA polymerase III su 48.0 64 0.0014 26.9 6.1 62 52-114 78-147 (329)
409 PF10740 DUF2529: Protein of u 47.8 38 0.00083 25.4 4.1 33 186-222 81-115 (172)
410 PRK14959 DNA polymerase III su 47.7 29 0.00063 31.8 4.2 16 75-90 118-133 (624)
411 KOG0442 Structure-specific end 47.5 1E+02 0.0022 29.3 7.5 62 41-105 91-152 (892)
412 COG2842 Uncharacterized ATPase 47.4 26 0.00056 28.8 3.5 29 74-103 163-191 (297)
413 KOG0339 ATP-dependent RNA heli 47.3 28 0.0006 31.0 3.8 43 186-228 295-337 (731)
414 COG1875 NYN ribonuclease and A 47.2 27 0.00058 29.8 3.6 33 78-114 353-385 (436)
415 PF05872 DUF853: Bacterial pro 47.1 27 0.00057 30.7 3.7 43 74-116 252-299 (502)
416 PRK14086 dnaA chromosomal repl 46.6 21 0.00046 32.6 3.2 70 51-120 344-423 (617)
417 TIGR03714 secA2 accessory Sec 46.5 84 0.0018 29.6 7.0 53 2-59 427-480 (762)
418 COG0470 HolB ATPase involved i 46.0 33 0.00071 28.0 4.1 61 52-114 74-146 (325)
419 COG1444 Predicted P-loop ATPas 45.7 74 0.0016 29.9 6.4 95 2-119 264-358 (758)
420 PLN02723 3-mercaptopyruvate su 45.7 50 0.0011 27.5 5.1 47 176-226 255-305 (320)
421 KOG1513 Nuclear helicase MOP-3 45.4 25 0.00055 33.1 3.4 118 3-127 322-467 (1300)
422 cd03239 ABC_SMC_head The struc 45.4 33 0.00072 25.7 3.7 39 75-113 115-154 (178)
423 PRK08762 molybdopterin biosynt 45.3 30 0.00066 29.4 3.8 37 186-226 56-93 (376)
424 PRK07399 DNA polymerase III su 45.3 94 0.002 25.8 6.6 39 75-115 123-161 (314)
425 PF02608 Bmp: Basic membrane p 45.0 1.5E+02 0.0033 24.3 7.9 69 16-85 22-94 (306)
426 cd01400 6PGL 6PGL: 6-Phosphogl 45.0 59 0.0013 25.3 5.1 36 172-209 162-197 (219)
427 COG1054 Predicted sulfurtransf 44.9 57 0.0012 26.9 5.0 47 175-225 160-207 (308)
428 PRK11493 sseA 3-mercaptopyruva 44.8 30 0.00064 28.1 3.6 47 176-226 73-124 (281)
429 PRK09087 hypothetical protein; 44.8 36 0.00078 26.7 3.9 39 78-118 89-127 (226)
430 KOG0338 ATP-dependent RNA heli 44.7 49 0.0011 29.6 4.9 42 186-227 251-292 (691)
431 PRK12898 secA preprotein trans 44.6 40 0.00087 31.1 4.6 54 175-228 131-185 (656)
432 TIGR02673 FtsE cell division A 44.6 29 0.00063 26.6 3.4 52 74-125 153-204 (214)
433 KOG1133 Helicase of the DEAD s 44.5 17 0.00038 33.4 2.3 39 51-90 323-362 (821)
434 PRK05707 DNA polymerase III su 44.4 69 0.0015 26.8 5.7 40 74-114 104-143 (328)
435 PRK07471 DNA polymerase III su 44.2 30 0.00066 29.4 3.6 42 74-116 139-180 (365)
436 COG1485 Predicted ATPase [Gene 44.1 29 0.00062 29.3 3.3 47 74-121 128-175 (367)
437 COG0653 SecA Preprotein transl 44.0 63 0.0014 30.6 5.8 48 170-221 410-459 (822)
438 PRK14088 dnaA chromosomal repl 44.0 43 0.00093 29.3 4.6 76 51-126 160-246 (440)
439 TIGR03167 tRNA_sel_U_synt tRNA 43.4 54 0.0012 27.2 4.9 34 188-225 75-109 (311)
440 cd06353 PBP1_BmpA_Med_like Per 43.0 1.4E+02 0.003 23.8 7.1 65 18-84 22-89 (258)
441 COG1111 MPH1 ERCC4-like helica 42.9 1.4E+02 0.003 26.7 7.3 74 2-86 369-453 (542)
442 PRK11784 tRNA 2-selenouridine 42.7 34 0.00074 28.9 3.7 37 186-226 87-124 (345)
443 KOG0340 ATP-dependent RNA heli 42.6 28 0.00062 29.5 3.1 53 175-227 59-115 (442)
444 smart00382 AAA ATPases associa 42.2 46 0.001 22.5 3.9 19 77-95 79-97 (148)
445 KOG0018 Structural maintenance 41.9 34 0.00074 33.0 3.8 35 79-115 1076-1110(1141)
446 cd00860 ThrRS_anticodon ThrRS 41.0 93 0.002 19.7 7.1 50 2-53 4-53 (91)
447 PRK13341 recombination factor 41.0 48 0.001 31.0 4.7 40 76-120 109-148 (725)
448 PRK06964 DNA polymerase III su 40.8 95 0.0021 26.2 6.0 40 74-114 130-169 (342)
449 COG4588 AcfC Accessory coloniz 40.8 1.8E+02 0.0038 22.8 7.6 90 18-111 38-129 (252)
450 cd03278 ABC_SMC_barmotin Barmo 40.8 54 0.0012 25.0 4.3 38 75-112 134-171 (197)
451 KOG0327 Translation initiation 40.7 1E+02 0.0022 26.4 6.0 69 1-81 265-336 (397)
452 PF04273 DUF442: Putative phos 40.4 72 0.0016 21.9 4.4 46 160-206 56-105 (110)
453 PRK11034 clpA ATP-dependent Cl 40.2 41 0.00088 31.7 4.1 43 78-120 280-326 (758)
454 PRK07940 DNA polymerase III su 40.2 41 0.00089 28.9 3.8 63 52-115 85-155 (394)
455 PHA00350 putative assembly pro 40.1 44 0.00095 28.8 3.9 15 77-91 82-96 (399)
456 PLN02723 3-mercaptopyruvate su 39.7 40 0.00086 28.0 3.6 47 176-226 89-140 (320)
457 cd03216 ABC_Carb_Monos_I This 39.3 41 0.0009 24.6 3.4 52 74-125 98-149 (163)
458 KOG0996 Structural maintenance 39.2 36 0.00079 33.3 3.5 80 49-130 1176-1269(1293)
459 cd00267 ABC_ATPase ABC (ATP-bi 39.1 38 0.00082 24.5 3.1 49 74-122 96-144 (157)
460 PRK14953 DNA polymerase III su 39.0 57 0.0012 29.0 4.6 38 74-112 117-154 (486)
461 PRK13770 histidinol dehydrogen 38.9 74 0.0016 27.6 5.1 27 1-27 254-280 (416)
462 PRK06871 DNA polymerase III su 38.9 91 0.002 26.1 5.6 40 74-114 105-144 (325)
463 PRK07878 molybdopterin biosynt 38.9 43 0.00093 28.8 3.8 37 186-226 342-379 (392)
464 PRK07276 DNA polymerase III su 38.8 89 0.0019 25.7 5.4 65 51-116 71-143 (290)
465 PRK14955 DNA polymerase III su 38.6 54 0.0012 28.2 4.4 39 74-113 125-163 (397)
466 PRK00411 cdc6 cell division co 38.6 38 0.00083 28.7 3.5 26 77-102 139-164 (394)
467 PRK07411 hypothetical protein; 38.5 43 0.00092 28.8 3.7 37 186-226 341-377 (390)
468 cd03215 ABC_Carb_Monos_II This 38.2 41 0.00088 25.1 3.2 52 74-125 120-171 (182)
469 cd03229 ABC_Class3 This class 38.1 36 0.00079 25.3 2.9 49 74-122 116-165 (178)
470 PF02863 Arg_repressor_C: Argi 37.9 43 0.00094 20.9 2.8 24 186-209 46-69 (70)
471 COG1131 CcmA ABC-type multidru 37.8 34 0.00075 28.0 2.9 54 74-127 152-206 (293)
472 PRK05600 thiamine biosynthesis 37.8 63 0.0014 27.6 4.6 37 186-226 331-369 (370)
473 cd03263 ABC_subfamily_A The AB 37.7 46 0.001 25.6 3.6 51 74-125 149-199 (220)
474 cd03269 ABC_putative_ATPase Th 37.6 48 0.001 25.3 3.6 53 74-126 144-196 (210)
475 PF09413 DUF2007: Domain of un 37.5 68 0.0015 19.4 3.7 32 189-224 1-32 (67)
476 cd01531 Acr2p Eukaryotic arsen 37.4 46 0.001 22.5 3.2 41 186-226 61-107 (113)
477 PRK00254 ski2-like helicase; P 37.3 1.2E+02 0.0027 28.3 6.8 74 1-82 240-345 (720)
478 PHA03372 DNA packaging termina 37.2 49 0.0011 30.2 3.9 43 70-116 293-336 (668)
479 cd03226 ABC_cobalt_CbiO_domain 37.1 39 0.00084 25.7 3.0 51 74-124 142-192 (205)
480 TIGR00963 secA preprotein tran 37.0 68 0.0015 30.1 4.9 53 176-228 85-138 (745)
481 PRK06645 DNA polymerase III su 37.0 68 0.0015 28.7 4.8 18 74-91 126-143 (507)
482 PRK05563 DNA polymerase III su 36.9 44 0.00095 30.3 3.7 38 74-112 117-154 (559)
483 PF10100 DUF2338: Uncharacteri 36.6 2.9E+02 0.0062 24.1 16.2 132 3-139 4-145 (429)
484 PF13307 Helicase_C_2: Helicas 36.5 41 0.00089 24.9 3.0 78 2-87 12-92 (167)
485 cd03274 ABC_SMC4_euk Eukaryoti 36.3 57 0.0012 25.2 3.8 39 76-114 149-187 (212)
486 TIGR02169 SMC_prok_A chromosom 36.2 44 0.00095 32.8 3.9 42 75-116 1095-1136(1164)
487 PRK13342 recombination factor 36.1 64 0.0014 27.9 4.4 37 76-117 92-128 (413)
488 PRK11264 putative amino-acid A 35.8 53 0.0011 25.9 3.7 51 75-125 161-211 (250)
489 cd03273 ABC_SMC2_euk Eukaryoti 35.7 66 0.0014 25.5 4.2 42 75-116 187-228 (251)
490 PRK14962 DNA polymerase III su 35.7 42 0.00091 29.7 3.3 17 74-90 115-131 (472)
491 TIGR00069 hisD histidinol dehy 35.6 1E+02 0.0022 26.5 5.4 67 1-81 233-299 (393)
492 PRK00877 hisD bifunctional his 35.4 97 0.0021 27.0 5.3 67 1-81 264-330 (425)
493 cd03262 ABC_HisP_GlnQ_permease 35.3 46 0.00099 25.4 3.2 52 74-125 151-202 (213)
494 PF03129 HGTP_anticodon: Antic 35.2 1.2E+02 0.0027 19.5 7.1 49 1-51 1-52 (94)
495 KOG1802 RNA helicase nonsense 35.2 1.6E+02 0.0035 27.5 6.7 74 2-85 457-577 (935)
496 PRK07993 DNA polymerase III su 35.1 98 0.0021 26.0 5.3 63 51-114 73-145 (334)
497 PRK11124 artP arginine transpo 35.1 47 0.001 26.0 3.3 53 74-126 157-209 (242)
498 cd06296 PBP1_CatR_like Ligand- 35.0 2.2E+02 0.0047 22.2 14.5 34 176-210 167-200 (270)
499 PRK14950 DNA polymerase III su 34.9 63 0.0014 29.4 4.4 38 74-112 118-155 (585)
500 cd06572 Histidinol_dh Histidin 34.9 81 0.0018 27.1 4.7 27 1-27 237-263 (390)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-42 Score=289.06 Aligned_cols=209 Identities=33% Similarity=0.503 Sum_probs=192.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||||||.|+.+++..++..+ .++..+++||.+...|...+ +.+.||+|+||+++.+++.. +..+++++.++
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~-g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEE-GSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHc-CCccccceeEE
Confidence 47999999999999999999999887 68999999999999999999 68999999999999999999 99999999999
Q ss_pred EEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||+|++.||.++++.|++.+ +...|+++||||||.+++.++..|+.+|..+.+..... ....
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------------~~a~ 310 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------------LKAN 310 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------------hhhh
Confidence 999999999999999999999999 55668999999999999999999999999988865511 4567
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++.|....++...|...+..+|... ...|+||||+|++.|+++++.|... |+++.++||+.+|+|
T Consensus 311 ~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~e 379 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSE 379 (519)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHH
Confidence 88899999999989999999988755 4569999999999999999999988 899999999999976
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=271.26 Aligned_cols=207 Identities=36% Similarity=0.623 Sum_probs=199.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++||+||||||.||..+++.|+... ++++..+.||.....+...+ .++|||||+||++|.+++.+++.|+++.++++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L-~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQL-SKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHh-hcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 58999999999999999999999888 99999999999999888888 68999999999999999998799999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++++..|.+.+..|++.+|..+|+++||||++..+.++....+.+|+.+.+... +.+.+
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------------y~tv~ 273 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------------YQTVD 273 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccch---------------hcchH
Confidence 999999999999999999999999999999999999999999999999999999999888 88999
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++|+|..++..+|...|.++++...+.+.||||+|...++.++-.|+.. |+.+..+||+|+|+
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l----g~~a~~LhGqmsq~ 337 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL----GFQAIPLHGQMSQS 337 (476)
T ss_pred HhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc----CcceecccchhhHH
Confidence 99999999999999999999999998899999999999999999999999 99999999999986
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-41 Score=258.47 Aligned_cols=207 Identities=32% Similarity=0.488 Sum_probs=198.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||+|++||||||.|+.+++..++.+. ++.+..+.||.+..++++.+ .-|++++.|||+++.+++++ +.+.-+.++++
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmikr-~~L~tr~vkml 173 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIKR-RSLRTRAVKML 173 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHHh-ccccccceeEE
Confidence 68999999999999999999999988 89999999999999999988 58999999999999999999 99999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++.+|.+.+..|.+++|+..|++++|||+|.++.++.++|+.+|+.+.+.+. ..+.+
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd---------------eltlE 238 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD---------------ELTLE 238 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC---------------CCchh
Confidence 999999999999999999999999999999999999999999999999999999999888 67889
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++++|+.++.++ |.+.|++|.....-.+++|||||++.++.|...+++. ++.+.++||+|+|+|
T Consensus 239 gIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~----nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMEQKE 304 (400)
T ss_pred hhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh----CceeeeccCCcchhH
Confidence 9999999999877 9999999999998899999999999999999999998 999999999999987
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-40 Score=285.47 Aligned_cols=209 Identities=35% Similarity=0.581 Sum_probs=194.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||||||.|+++++++++...+++++..++||.+...+...+ +.++||+||||+++++++.. +.+++++++++|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l-~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lV 179 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL-KRGVDIVVATPGRLLDLIKR-GKLDLSGVETLV 179 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH-hcCCCEEEECccHHHHHHHc-CCcchhhcCEEE
Confidence 7999999999999999999999876468999999999999999888 45799999999999999999 799999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||.|++.||.+++..|++.+|.+.|+++||||+++.+..+.+.++.+|..+.+..... ......
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~-------------~~~~~~ 246 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL-------------ERTLKK 246 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------------cccccC
Confidence 9999999999999999999999999999999999999999999999999999888875511 237899
Q ss_pred ceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.|+++.++..+ |...|..++......++||||+|+..|++++..|... |+++..+||+|+|++
T Consensus 247 i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~ 311 (513)
T COG0513 247 IKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEE 311 (513)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHH
Confidence 999999999876 9999999999888889999999999999999999998 999999999999874
No 5
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-39 Score=266.76 Aligned_cols=210 Identities=39% Similarity=0.607 Sum_probs=198.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
||||+||||||.|++.++.+.+.+. ++..+++.||.....+..++ .+.+|+||||++|+++|+.+..+..++++++|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi--~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI--SQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh--hcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 7999999999999999999999887 89999999999988777777 67999999999999999988889999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++++.||...+..|++++|..+|+++||||.+..+..+++..+.+|..|.++.... ..+|++
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~-------------~atP~~ 287 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV-------------AATPSN 287 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc-------------ccChhh
Confidence 9999999999999999999999999999999999999999999999999999999875522 579999
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++|+|+.++..+|+++|+..++.+...++|||.+|.+.+..++..|.++ .+|++..++||.|.|+.
T Consensus 288 L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl--rpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 288 LQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL--RPGIPLLALHGTMSQKK 353 (758)
T ss_pred hhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc--CCCCceeeeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999999863
No 6
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-38 Score=259.29 Aligned_cols=213 Identities=61% Similarity=0.967 Sum_probs=199.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~l 80 (230)
+|||+||||||.||..++..|...++++.+.++.||.+.+++++.+.+++++|+||||++|.+++++ ...+++++++++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 7999999999999999999999998899999999999999999999999999999999999999987 344567799999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++++.||...++.|++.+|+.+++.+||||.+..+..+...+++||+.+.+..... ..+|+
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------------~~tPS 228 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------------SATPS 228 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeeccccc-------------ccCch
Confidence 99999999999999999999999999999999999999999999999999999999888732 33899
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+..+|+.|++.+|...+.++|.+...+++|||.+|-.+++..+..|... .++.+..++||.|.+++
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~--l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL--LKKREIFSIHGKMSQKA 295 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH--hCCCcEEEecchhcchh
Confidence 99999999999999999999999999999999999999999999999988 56889999999999873
No 7
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-38 Score=247.77 Aligned_cols=206 Identities=31% Similarity=0.466 Sum_probs=196.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
|++|++||||||.|+...+.+++..+ +++++.-+||.+..+++-++ ..+.|++||||++++++++. +.-.+++..++
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl-~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~l 231 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL-NQTVHLVVGTPGRILDLAKK-GVADLSDCVIL 231 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee-cCceEEEEcCChhHHHHHhc-ccccchhceEE
Confidence 58999999999999999999999998 89999999999999888888 78999999999999999998 88889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.+++..|.+.+++++..+|+++|++++|||+|-.+..+..+++.+|..|..-.+ .++.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------------Ltl~ 295 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------------LTLK 295 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh----------------hhhc
Confidence 999999999999999999999999999999999999999999999999999999987666 6889
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+|..+++..|.--|..|+.+..-.++||||||.+++|-+|+.+.+. |+++..+|+.|.|+.
T Consensus 296 GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel----GyscyyiHakM~Q~h 360 (459)
T KOG0326|consen 296 GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL----GYSCYYIHAKMAQEH 360 (459)
T ss_pred chhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc----cchhhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 999999999998763
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=256.63 Aligned_cols=207 Identities=33% Similarity=0.524 Sum_probs=193.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||||||.|++.+.++++.+. ++.++++.||-+...|...+ +..|||+|+||+++.++++++..|.+.++..+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~L-Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVL-RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHH-hhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 7999999999999999999999887 89999999999998888777 789999999999999999999999999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||+|++.+|.+.+..|++.+|+++|+++||||+++.+..++...+..|+.|.+.+. ..++..
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~---------------~~~a~~ 397 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN---------------KDTAPK 397 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc---------------cccchh
Confidence 99999999999999999999999999999999999999999999999999999999888 678889
Q ss_pred ceEEEEEcCC---CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEP---DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.|-|+.+.+ ..+-..+..++...-..+++||+.|++.|.++.-.|--. |+++.-+||+|+|.|
T Consensus 398 LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl----gl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 398 LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL----GLKAGELHGSLTQEQ 464 (691)
T ss_pred hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh----hchhhhhcccccHHH
Confidence 9988887764 357788888888777789999999999999999999877 999999999999976
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-35 Score=255.68 Aligned_cols=207 Identities=34% Similarity=0.578 Sum_probs=189.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++||++||+|||.|+.+.++.++...+++++..++||.+...+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~l 151 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-EHGAHIIVGTPGRILDHLRK-GTLDLDALNTL 151 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCccHHHCCEE
Confidence 47999999999999999999998877679999999999988888777 58899999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++.+|...+..+++.++...|+++||||+++.+..+...++.+|..+.+... ....
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~----------------~~~~ 215 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST----------------HDLP 215 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC----------------CCCC
Confidence 999999999999999999999999999999999999999999999999999998877554 2345
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.++++.++..+|...+..++......++||||+|++.|+.++..|.+. |+++..+||+|+++|
T Consensus 216 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~e 280 (460)
T PRK11776 216 AIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRD 280 (460)
T ss_pred CeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHH
Confidence 58888999998889999999999888889999999999999999999988 999999999999864
No 10
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=244.19 Aligned_cols=210 Identities=40% Similarity=0.625 Sum_probs=193.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
|+|++||||||.|++.+++.+..+.+++.+..+.||.....+...+. ++++|+|+||++|.+++++++.+..++++++|
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhh-ccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 79999999999999999999999887899999999999888888884 59999999999999999997888899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC-CCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++++.||.+++++|++.+|..+|+++||||.++.++.+++--+. +|..+.+.+... ..+.+
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------------~~The 302 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------------RETHE 302 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------------cchhh
Confidence 9999999999999999999999999999999999999999999998877 588888766643 56788
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCC-CeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKS-KKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|.++.++...+...+..+|+++.. .++||||+|...+..++..|... .+++..+||+++|..
T Consensus 303 ~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~----dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 303 RLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI----DLPVLEIHGKQKQNK 368 (543)
T ss_pred cccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc----CCchhhhhcCCcccc
Confidence 899999999998899999999998765 89999999999999999999988 999999999999864
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=244.37 Aligned_cols=207 Identities=31% Similarity=0.487 Sum_probs=187.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++||+|||||||.||+.++++|+..+ ++++++++||-+..+|.+.|. .+|.|+|+||++|.++++- +..++.++.+|
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm-Katn~~rvS~L 374 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM-KATNLSRVSYL 374 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh-hcccceeeeEE
Confidence 47999999999999999999999888 999999999999999999995 9999999999999999998 89999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++.||.+.++.|...+++.+|.++||||++..++.+++.++.+|+.+....- .....
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v---------------gean~ 439 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV---------------GEANE 439 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh---------------hcccc
Confidence 999999999999999999999999999999999999999999999999999998776554 34567
Q ss_pred cceEEEEEcCC-CCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEP-DEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.|.|.+..+.. ..|+.+++.-|-. ....++|||+.-+..+++++..|.-. |+++..+||+|.|.|
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk----~~~v~llhgdkdqa~ 506 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK----GFNVSLLHGDKDQAE 506 (731)
T ss_pred chhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc----cceeeeecCchhhHH
Confidence 78887777765 4577777665554 35579999999999999999999987 999999999998754
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.1e-36 Score=246.97 Aligned_cols=207 Identities=32% Similarity=0.514 Sum_probs=194.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||||+||...-.+|+..+ +++++.+.||-+.+++--.+ +.+|+|+|+||++|.+.+.+ ..+-++++.++
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 58999999999999999999999988 89999999999998876666 78999999999999999998 88889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCC-------------------------CcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKL-------------------------RRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~-------------------------~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
|+||||.|++.||.+++..|+.++|.. +|+++||||.++.+..+++.||.+|+.+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999999731 6999999999999999999999999999
Q ss_pred EEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCC
Q 026925 136 EVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKS 215 (230)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g 215 (230)
..+.. ....+-++|.++.+...+|...|.+++++...+|+|||+|+++.|+.+++.|.+. |
T Consensus 481 tig~~---------------gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----g 541 (673)
T KOG0333|consen 481 TIGSA---------------GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----G 541 (673)
T ss_pred EeccC---------------CCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----c
Confidence 99888 5677888999999999999999999999888889999999999999999999999 9
Q ss_pred ceEEeccCCCCCCC
Q 026925 216 LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 ~~~~~lh~~~~~~e 229 (230)
+++..+||+-+|+|
T Consensus 542 ~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQ 555 (673)
T ss_pred ceEEEeeCCccHHH
Confidence 99999999999876
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-34 Score=248.17 Aligned_cols=207 Identities=33% Similarity=0.438 Sum_probs=185.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|++++++.++... ++++..+.||.....+...+ ..++||+|+||+++.+++.. +.+.+++++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 37999999999999999999998877 89999999998887777777 57899999999999999987 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||||++++++|..++..+++.++. ..|.++||||++..+..+...++.+|..+.+... ...
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~---------------~~~ 226 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE---------------QKT 226 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC---------------CcC
Confidence 99999999999999999999999984 5678999999999999999999999998877665 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.....+|...+..++......++||||+++..|+.++..|... |+++..+||+|+++|
T Consensus 227 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 227 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKK 293 (423)
T ss_pred CCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhH
Confidence 5667777777777889999999998877889999999999999999999988 999999999999865
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.9e-35 Score=257.60 Aligned_cols=208 Identities=30% Similarity=0.466 Sum_probs=190.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|++..+.++...++++++..++|+.+...+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~l 153 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-RQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGL 153 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 47999999999999999999998887789999999999888887777 57899999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++++|..++..|+..+|...|+++||||+|+.+..+...|+.+|..+.+... .....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~---------------~~~~~ 218 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS---------------VTTRP 218 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999988877655 44566
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.++.+...+|...+..++......++||||+|+..|++++..|.+. |+.+.++||+|++++
T Consensus 219 ~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~ 283 (629)
T PRK11634 219 DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQAL 283 (629)
T ss_pred ceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHH
Confidence 78888888888899999999999888889999999999999999999988 999999999999864
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.8e-35 Score=254.41 Aligned_cols=208 Identities=32% Similarity=0.487 Sum_probs=184.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|+.+.+++++... ++++..++|+.+...+...+ ..+++|+|+||++|.+++.. +...+++++++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLES-NVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHc-CCCChhhCcEE
Confidence 37999999999999999999998776 78999999999888877777 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC-CCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||+|++++|.+.+..|+..++..+|+++||||+++.+..++..++. ++..+.+.... ....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------------l~~~ 347 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------------LTAC 347 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------------cccC
Confidence 99999999999999999999999999999999999999999999998886 57666654431 1344
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++.+.+..+++.+|...+..++... ...++||||+|++.|+.++..|... |+++.++||+++++|
T Consensus 348 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~e 415 (545)
T PTZ00110 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEE 415 (545)
T ss_pred CCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHH
Confidence 67788888888888999999988765 5679999999999999999999987 999999999999865
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-34 Score=247.81 Aligned_cols=206 Identities=29% Similarity=0.512 Sum_probs=186.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||+|||.|+.+.++.+.... ++++..+.|+.+...+...+ .++++|+|+||+++++++.. ..+.+++++++|
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lV 154 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKL-RGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILV 154 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHH-cCCCcEEEEChHHHHHHHHc-CCcccccceEEE
Confidence 7999999999999999999998776 78999999999888777776 57899999999999999887 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++++++|...+..++..++...|+++||||+++.+..+...++.+|..+.+... ......
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~~~~~~ 219 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR---------------NTASEQ 219 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc---------------cccccc
Confidence 99999999999999999999999999999999999999999999999999988877655 445677
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.+.+..++...|...+..++.....+++||||+++..|+.++..|... |+++..+||+|+++|
T Consensus 220 i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~ 283 (456)
T PRK10590 220 VTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGA 283 (456)
T ss_pred eeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHH
Confidence 8888888888888888888888877889999999999999999999988 999999999998754
No 17
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-35 Score=243.00 Aligned_cols=207 Identities=35% Similarity=0.519 Sum_probs=189.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||||||.|++++++++.... .++...++|+.+...+...+ .++|||+|+||++|.+++.. +.+.+.+++++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~-~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFI-KRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhh-ccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 37999999999999999999998766 79999999998888888888 68999999999999999999 99999999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCC----CCcEEEEeecCchHHHHHHHhccCC-CeEEEEeccCcccccccchhccc
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPK----LRRTGLFSATQTEAVEELSKAGLRN-PVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~----~~q~i~~SAt~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
|+||||+|++ .+|.+++++|+.+... +.|.++||||+|..+..++..++.+ ...+.+...
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-------------- 296 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-------------- 296 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--------------
Confidence 9999999999 8999999999988753 7899999999999999999999886 777777777
Q ss_pred cCCCCccceEEEEEcCCCCcHHHHHHHHHhCC---------CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 155 SSKTPLGLHLEYLECEPDEKPSQLVDLLIKNK---------SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---------~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....+++.|.+..+.+.+|...|++++.+.. .++++|||+|++.|.+++.+|... |+++..+||+.
T Consensus 297 -g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~----~~~~~sIhg~~ 371 (482)
T KOG0335|consen 297 -GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN----GYPAKSIHGDR 371 (482)
T ss_pred -ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC----CCCceeecchh
Confidence 6789999999999999999999999998543 238999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+|.|
T Consensus 372 tq~e 375 (482)
T KOG0335|consen 372 TQIE 375 (482)
T ss_pred hhhH
Confidence 8876
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-34 Score=253.26 Aligned_cols=208 Identities=32% Similarity=0.500 Sum_probs=186.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||+|||.|+++.+.+++... ++++..++|+.....+...+ ..++||+|+||++|++++...+.+.+++++++
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 37999999999999999999998876 89999999999887777666 57899999999999999987345779999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||||||+|++++|..++..|++.++. ..|+++||||+++.+..+...++.+|..+.+... ...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---------------~~~ 228 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---------------TIT 228 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---------------ccc
Confidence 99999999999999999999999986 6899999999999999999999999887766555 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.....+|...+..++......++||||||+..|+.++..|.+. |+++..+||+|+++|
T Consensus 229 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~e 295 (572)
T PRK04537 229 AARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKK 295 (572)
T ss_pred ccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHH
Confidence 6678888888888889999999998888889999999999999999999988 999999999999754
No 19
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=236.29 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=184.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc-ccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~-~~~~~l~ 78 (230)
.++|||||||||+|+++++.++...++ .+++.-+.++.+-......+ ...|||+|+||++++.++.. +. ..+..++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~ 172 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAA-GVLEYLDSLS 172 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhh-ccchhhhhee
Confidence 379999999999999999999988775 57777666555544444444 68899999999999999988 55 6789999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
++|+||||.+++.||.+++..+.+++|+..|..++|||+++++..+.+.++++|.++.+.++. ...
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--------------l~~ 238 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--------------LPN 238 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999887774 346
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+++++|+++.|++.+|...+..+++ +.=.+++|||+||..+|-+|.-+|... |++.+++.|.||.+
T Consensus 239 ~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF----GiksciLNseLP~N 305 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF----GIKSCILNSELPAN 305 (569)
T ss_pred cccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh----CcHhhhhccccccc
Confidence 7999999999999999999888887 334468999999999999999999988 99999999999975
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.6e-33 Score=242.48 Aligned_cols=207 Identities=26% Similarity=0.454 Sum_probs=182.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||||||.|+++.++.+.... ++++..+.||.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 37999999999999999999998877 68889999998888887777 57899999999999999988 78889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++++|.+.+..|+..++ ..|+++||||+++.++.++..++.++..+.+... .....
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~---------------~~~~~ 338 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP---------------NRPNK 338 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC---------------CCCCc
Confidence 9999999999999999999999885 6899999999999999999999999988877655 34456
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.+..++..+|...+.+++... ...++||||+++..|+.++..|.... |+++..+||+|+++|
T Consensus 339 ~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~---g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 339 AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT---GLKALSIHGEKSMKE 406 (518)
T ss_pred ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---CcceEEeeCCCCHHH
Confidence 6788888888888888899988754 33689999999999999999997643 899999999998764
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9e-33 Score=237.26 Aligned_cols=206 Identities=30% Similarity=0.453 Sum_probs=183.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||+|||.|+++.++.++... ++++..++|+.....+...+ .++++|+|+||+++.+++.. +.+.+++++++|
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lV 152 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKE-ENFDCRAVETLI 152 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877 89999999998887776666 57899999999999999988 888999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch-HHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||+|++++|...+..+...++...|+++||||++. .+..+...++.+|..+..... .....
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~ 217 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---------------RRERK 217 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---------------ccccc
Confidence 99999999999999999999999989999999999985 588888888889988877665 45566
Q ss_pred cceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.+.++.++. ..|...+..+++.....++||||+++++|+.++..|... |+++..+||+|+++|
T Consensus 218 ~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~ 283 (434)
T PRK11192 218 KIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAK 283 (434)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHH
Confidence 77787777764 668899999998777789999999999999999999987 999999999998764
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.5e-33 Score=239.35 Aligned_cols=208 Identities=31% Similarity=0.443 Sum_probs=185.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|+++.++.+.... ++++..+.||.+...+...+..++++|+|+||++|+.++.. +...+++++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 37999999999999999999998776 78999999998888787777667899999999999998887 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||||+|++++++|...+.++++.++. ..|++++|||++.++..+...++.+|..+.+... ...
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 306 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE---------------NVA 306 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC---------------cCC
Confidence 99999999999999999999999864 5799999999999999999999999988877655 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.+...+|...+..++......++||||+++++|+.++..|.+. |+++..+||++++++
T Consensus 307 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 307 SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHK 373 (475)
T ss_pred CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 5667777888888889999999998888889999999999999999999887 999999999998754
No 23
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.8e-34 Score=240.48 Aligned_cols=207 Identities=25% Similarity=0.432 Sum_probs=191.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||+|.||...+.+++..+.|.++....||++...+..++ ++++|+||||+++..++.. +.++.+.++++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl--k~~rIvIGtPGRi~qL~el-~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL--KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--hhceEEecCchHHHHHHHh-cCCCccceeEE
Confidence 47999999999999999999999988899999999999988888887 6788999999999999999 99999999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||.|++ ..|..++..|.+.+|..+|+++||||++..+..++.+||++|..+..... +...
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~---------------d~~L 236 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD---------------DVQL 236 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC---------------Ccee
Confidence 9999999998 56999999999999999999999999999999999999999999988777 5667
Q ss_pred ccceEEEEEcCCC--------CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPD--------EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~--------~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
-.++|+++..... .|...|-++++..+..+.||||+..-+|+-++.+|... |+++.++.|.|+|+|
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss----G~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS----GLDVTFISGAMSQKD 310 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc----CCCeEEeccccchhH
Confidence 7788888877653 37788888899999999999999999999999999988 999999999999976
No 24
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-33 Score=225.05 Aligned_cols=206 Identities=32% Similarity=0.514 Sum_probs=192.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|++++||||||.|+.++.+.+.... ++++..+.||.....+...+...+++|+||||+++.+++.. +.+....++++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmf 173 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMF 173 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEE
Confidence 57899999999999999999999887 89999999999888676677677899999999999999998 78888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++.||.+.+..|.+.+|++.|++++|||.|.++....++|+.+|+.+.+... ..+.+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~---------------~ltl~ 238 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD---------------ELTLE 238 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch---------------hhhhh
Confidence 999999999999999999999999999999999999999999999999999999999888 57899
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+++.+.+++|++.++.+.+ .....+|||||++.+..+...|... |+...++||+|+|.|
T Consensus 239 gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~----~~~~s~~~~d~~q~~ 301 (397)
T KOG0327|consen 239 GIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH----GFTVSAIHGDMEQNE 301 (397)
T ss_pred heeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC----CceEEEeecccchhh
Confidence 99999999999999999999998 6678999999999999999999877 999999999999875
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=233.97 Aligned_cols=228 Identities=32% Similarity=0.537 Sum_probs=188.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|||||||||||.|+|+.+.+|...+.=+-.+.++||.....+..++ ++|++|+||||++|.+.+.++..+.+++++.+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL-RKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL-RKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH-hcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 68999999999999999999999877456777889999988888888 79999999999999999999888999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCC-------------CCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc-----Cc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-------------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE-----SK 142 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-------------~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~-----~~ 142 (230)
|+||+|++++.||.+++..|++.+. ...|-+++|||+++.+.++++.-+.+|+.|..... ++
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999987772 23688999999999999999999999999983221 11
Q ss_pred ccccccchh-----ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC----CCCeEEEEcCchhHHHHHHHHhhhhhcc
Q 026925 143 SHHVSASSQ-----QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN----KSKKIIIYFMTCACVDYWGVVLPRLAVL 213 (230)
Q Consensus 143 ~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~~~~ 213 (230)
...+..... ..+....|+++.++|..+++.-++..|..+|.+. ..+++|||+++.+.++.=+..|....-.
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 111111111 1233668899999999999999998888888643 6679999999999999999888765311
Q ss_pred ------------------CCceEEeccCCCCCCC
Q 026925 214 ------------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ------------------~g~~~~~lh~~~~~~e 229 (230)
-+.++.-+||+|+|+|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 1347888999999875
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=216.58 Aligned_cols=208 Identities=30% Similarity=0.412 Sum_probs=185.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC---CcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~---~~~~~~~l 77 (230)
|++|++||||||.|+...+.-++... ++++..+.||.+.-.+...+ ..++|++|+||+++..++.++ ..+.++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 68999999999999999999998877 89999999999988777777 689999999999999999874 23458999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCC--eEEEEeccCcccccccchhcccc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNP--VRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
+++|+||||++++.+|.+.+..+.+-+|..+|..+||||+++.+.++...-...+ ..+...+.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~--------------- 219 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG--------------- 219 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC---------------
Confidence 9999999999999999999999999999999999999999999888887666553 33344333
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+++.+.+.|+.++...|..++.++|+.. +...++||+|+..+|+.++..|.+. ++++.++||.|+|+|
T Consensus 220 vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l----e~r~~~lHs~m~Q~e 292 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL----EVRVVSLHSQMPQKE 292 (442)
T ss_pred CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----ceeeeehhhcchHHH
Confidence 678899999999999999999999999854 4579999999999999999999999 999999999999986
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=224.34 Aligned_cols=207 Identities=31% Similarity=0.519 Sum_probs=184.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhh-----hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIS-----TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
+.|||||+||||+|+++.+..+.. .+|.++...+.||.+..++...+ +.+.||+|+||++|.+++.. +...+.
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 479999999999999999999876 44778999999999999998888 79999999999999999998 888899
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
-.+++.+||||+|++.||.+++++|++++...+|+++||||+|..+..+++.-+-.|+++.+...+
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-------------- 391 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-------------- 391 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998884
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...-++.|.+-.+..+.|+.++++-|-+. ..|+||||..+.+++.++.||.-. |+.+..+|||-+|++
T Consensus 392 -AAsldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlK----GVEavaIHGGKDQed 459 (610)
T KOG0341|consen 392 -AASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLK----GVEAVAIHGGKDQED 459 (610)
T ss_pred -ccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHc----cceeEEeecCcchhH
Confidence 23344444455567778888888777444 369999999999999999999988 999999999999875
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=3.3e-30 Score=219.40 Aligned_cols=206 Identities=33% Similarity=0.538 Sum_probs=179.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++||.|+.+.+..++... ++.+..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+++++++|
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvV 175 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFI 175 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHh-CCcccccccEEE
Confidence 7999999999999999999998765 78888888988877777666 46789999999999999987 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|++.+++|...+..+++.++...|++++|||+++.+..+...++.+|..+.+... ......
T Consensus 176 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 240 (401)
T PTZ00424 176 LDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---------------ELTLEG 240 (401)
T ss_pred EecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---------------CcccCC
Confidence 99999999999999999999999999999999999999999999999999887766554 334566
Q ss_pred ceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.+++..++. ..+...+..++......++||||+|+++|+.++..|.+. |+++..+||+|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~ 305 (401)
T PTZ00424 241 IRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKD 305 (401)
T ss_pred ceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHH
Confidence 7777777665 347777888888777789999999999999999999887 999999999998764
No 29
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.2e-31 Score=212.61 Aligned_cols=204 Identities=29% Similarity=0.414 Sum_probs=183.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||||||.|+.-++.+..- .+.+.++++|+....++.+.+ +++.+|+++||++|.++.-. +.++++++-++|
T Consensus 297 ~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~l-krgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDL-KRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHH-hcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 68999999999999999998853 388999999999999999999 69999999999999999887 889999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC-Cc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT-PL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (230)
+||||+|++.||.+.+++|+=.+++.+|+++.|||||+.++.++..|+.+|..+.+..- +.. ..
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsL---------------dL~a~~ 437 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSL---------------DLVAVK 437 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEeccc---------------ceeeee
Confidence 99999999999999999999999999999999999999999999999999999888766 233 35
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++|.++...+.+|...+..++... ...++||||.++..|+.|...|.-. |+.+.++||+-+|.
T Consensus 438 sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~----gi~~q~lHG~r~Q~ 502 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK----GISSQSLHGNREQS 502 (629)
T ss_pred eeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc----ccchhhccCChhhh
Confidence 5677777777888998888888766 5579999999999999999999877 99999999998875
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.5e-31 Score=235.87 Aligned_cols=207 Identities=33% Similarity=0.491 Sum_probs=188.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~~~l~ 78 (230)
+++|++||||||.||++++++|+... +++++.++|++...+++..+ +.++.|+|+||++..+++..+ +...+.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiael-kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAEL-KRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHH-hcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 58999999999999999999999987 99999999999999999999 466999999999999987651 223466677
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
++|+||||+|++.+|.+.+..|++++++.+|+++||||++..++.+++..+..|+.+.+... ...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~---------------svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR---------------SVV 582 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc---------------eeE
Confidence 99999999999999999999999999999999999999999999999999999999888766 567
Q ss_pred CccceEEEEEcC-CCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECE-PDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+++.+..+. +.+|+..|++||... ...++||||.+++.|+.|...|.+. |+.+..+|||.+|.
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a----g~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA----GYNCDSLHGGVDQH 650 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc----CcchhhhcCCCchH
Confidence 888988888888 889999999999744 4679999999999999999999988 99999999999984
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.4e-32 Score=226.30 Aligned_cols=207 Identities=28% Similarity=0.505 Sum_probs=176.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~l~ 78 (230)
++||++||||||-|+.+++..++... ++++..++||-....|.+-+ +..+||+|+||++|+.++..... -.+++++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL-~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLL-NQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHH-hcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 48999999999999999999999865 99999999999988887777 67899999999999999987333 2589999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCch---------------------HHHHHHHh--ccC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTE---------------------AVEELSKA--GLR 130 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~---------------------~~~~~~~~--~~~ 130 (230)
++|+||||+|+..|+...+..|+..+. +.+|++.||||++- .++.++.. +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999998885 35799999999751 13333333 344
Q ss_pred CCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 131 NPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.|.+|...+. ..+.+.+....+.|+..+|.-.+.++|-..+ +++|||||+...+.+|+.+|...
T Consensus 423 kpkiiD~t~q---------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 423 KPKIIDLTPQ---------------SATASTLTESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred CCeeEecCcc---------------hhHHHHHHHHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhc
Confidence 7788888777 5677888888999999999888888776555 68999999999999999999998
Q ss_pred hccCCceEEeccCCCCCCC
Q 026925 211 AVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 211 ~~~~g~~~~~lh~~~~~~e 229 (230)
+++...+|+.|.|++
T Consensus 487 ----~i~p~~LHA~M~QKq 501 (731)
T KOG0347|consen 487 ----DIPPLPLHASMIQKQ 501 (731)
T ss_pred ----CCCCchhhHHHHHHH
Confidence 999999999998864
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.7e-31 Score=213.14 Aligned_cols=205 Identities=34% Similarity=0.503 Sum_probs=191.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||+|||.|+.+..+.++... +++..+++|+.+.+++...+ .+++|||++||+++..+.-. -.+.++.+.++|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l-~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILL-NENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHh-ccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 6899999999999999999999887 89999999999999998888 68899999999999887766 558899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||.++..||.+.+..+++.+|..+|+++||||+|..+-.+++..+.+|..+.+..+ ....+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve---------------tkise~ 234 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE---------------TKISEL 234 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh---------------hhcchh
Confidence 99999999999999999999999999999999999999999999999999999998777 678899
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++..|+.+.+.+|..+|+.++... ..++++|||.|+.+|+.+...|... |+.+..+.|.|++.
T Consensus 235 lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~----g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF----GGEGSDIYSSLDQE 298 (529)
T ss_pred hhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc----CCCccccccccChH
Confidence 999999999999999999999866 4578999999999999999999998 99999999999874
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.9e-30 Score=206.72 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=181.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++.|+||||||.|+..++.+.+++. ++.......+....+.. . -..+|++|||+.+.+++...+.++++.++.+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~---i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-K---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-c---chhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 57889999999999999999999887 78888777666332211 1 1257999999999999877677889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||.|++ .||.++-.+|++.+|++.|.++||||+.+.+..++.+..+++..+.+..+ ....
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e---------------el~L 301 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE---------------ELAL 301 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh---------------hccc
Confidence 9999999996 57999999999999999999999999999999999999999999999888 6788
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+++++++.|.. .+|...+..+.....-.++||||.|+..|..++..+.+. |+.+.++||+|+-+|
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~----Gh~V~~l~G~l~~~~ 368 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE----GHQVSLLHGDLTVEQ 368 (477)
T ss_pred cchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc----CceeEEeeccchhHH
Confidence 999999998864 679999999998888889999999999999999999999 999999999998654
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.7e-30 Score=197.10 Aligned_cols=184 Identities=26% Similarity=0.469 Sum_probs=171.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|+|.|||||-||.+.+.+|..++|++++....||.+...+.+.+. +-|+|+||||++++.+.++ +.+.+++++++|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 68999999999999999999999999999999999999988888884 5899999999999999999 999999999999
Q ss_pred Eecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||+|.|+.+ ..+.+++.|.+.-|+..|+++||||++++++...++||.+|..|.+.++. -.+.-
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~--------------KLtLH 256 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA--------------KLTLH 256 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh--------------hhhhh
Confidence 9999999865 57889999999999999999999999999999999999999999998885 46778
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHH
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVD 201 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 201 (230)
.++|+|+.+++.+|...+.+||+.....+++||+.+.++..
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh
Confidence 89999999999999999999999999999999999988744
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=197.77 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=182.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCC----cEEEEcChHHHHHHhhCCcccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGA----NLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
.||||+||++|+.|+++++..++... ++.|+.+.|..+.+.+...+.+..+ ||+|+||+||.+++.+.+.|.+++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48999999999999999999999987 8999999999999999999976666 999999999999999878999999
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhCCC----------------------------------CCcEEEEeecCchHHH
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRLPK----------------------------------LRRTGLFSATQTEAVE 122 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l~~----------------------------------~~q~i~~SAt~~~~~~ 122 (230)
++++||||||+|++..|...+-.++..+.. ..+.+.+|||++....
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 999999999999998777766555433321 1246889999988888
Q ss_pred HHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHH
Q 026925 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDY 202 (230)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~ 202 (230)
.+...-++.|....+.... +.....|..+.|+.+.++...|...+..+++..+..++|+|+|++..+.+
T Consensus 376 Kl~~l~l~~Prl~~v~~~~-----------~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKPL-----------IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred HHhhhhcCCCceEEeeccc-----------ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 8888888888766554210 11167889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCceEEeccCCCCCC
Q 026925 203 WGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 203 l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+++.|.-.+...+.++..++|++.++
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k 470 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGK 470 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHH
Confidence 99999855445677888888888764
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=3.4e-26 Score=204.37 Aligned_cols=198 Identities=18% Similarity=0.185 Sum_probs=154.1
Q ss_pred eEE-EeCChhhHHHHHHHHHHhhhhCC----------------------CceEEEEEcCcchHHHHHHHHhcCCcEEEEc
Q 026925 2 GMI-ISPTRELSSQIYHVAQPFISTLP----------------------DVKSVLLVGGVEVKADVKKIEEEGANLLIGT 58 (230)
Q Consensus 2 ~li-l~Pt~eLa~q~~~~~~~l~~~~~----------------------~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~T 58 (230)
+|| ++||||||.|+++.+++++..++ ++++..++||.+...+...+ ..+++|||||
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l-~~~p~IIVgT 142 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD-PHRPAVIVGT 142 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc-CCCCcEEEEC
Confidence 455 66999999999999999998653 38899999999988888888 6889999999
Q ss_pred ChHHHHHHhhCCcc----------------cCCcccEEEEeccccccccccHHHHHHHHHhC--CC---CCcEEEEeecC
Q 026925 59 PGRLYDIMERMDVL----------------DFRNLEILVLDEADRLLDMGFQKQISYIISRL--PK---LRRTGLFSATQ 117 (230)
Q Consensus 59 P~~l~~~l~~~~~~----------------~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l--~~---~~q~i~~SAt~ 117 (230)
+ +++.+ +.+ .+++++++|+|||| ++.+|.+.+..|++.+ +. ..|+++||||+
T Consensus 143 ~----D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~ 215 (844)
T TIGR02621 143 V----DMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATS 215 (844)
T ss_pred H----HHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCC
Confidence 5 44444 443 26889999999999 6788999999999975 43 26999999999
Q ss_pred chHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH---hCCCCeEEEEc
Q 026925 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI---KNKSKKIIIYF 194 (230)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~---~~~~~~~lIF~ 194 (230)
+..+..+...++.++..+.+... ......+.++ +..+...|...+...+. ...++++||||
T Consensus 216 p~ei~~l~~~~~~~p~~i~V~~~---------------~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~ 279 (844)
T TIGR02621 216 RTDGPDRTTLLSAEDYKHPVLKK---------------RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFC 279 (844)
T ss_pred CccHHHHHHHHccCCceeecccc---------------cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 99888888888877776555433 3344555664 44454555544443322 34567899999
Q ss_pred CchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 195 MTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 195 ~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
||+++|+.++..|.+. ++ ..+||+|++++
T Consensus 280 NTv~~Aq~L~~~L~~~----g~--~lLHG~m~q~d 308 (844)
T TIGR02621 280 RTVKHVRKVFAKLPKE----KF--ELLTGTLRGAE 308 (844)
T ss_pred CCHHHHHHHHHHHHhc----CC--eEeeCCCCHHH
Confidence 9999999999999887 66 89999998864
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=5.2e-26 Score=211.91 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=154.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc-----hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
.++||+||++||.|+.+.++.++... ++.+..+.++.. ..+....+.++.++|+|+||+++.+.+. .+...
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~ 200 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKK 200 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcccc
Confidence 47999999999999999999999876 677777776543 2333445544679999999999998875 35567
Q ss_pred cccEEEEeccccccc-----------cccH-HHHHHHHHhCCC------------------------CCcEEEEeecCch
Q 026925 76 NLEILVLDEADRLLD-----------MGFQ-KQISYIISRLPK------------------------LRRTGLFSATQTE 119 (230)
Q Consensus 76 ~l~~lVvDEad~l~~-----------~~~~-~~~~~i~~~l~~------------------------~~q~i~~SAt~~~ 119 (230)
+++++|+||||+|++ .||. +++..+++.++. ..|+++||||.++
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 799999999999996 4674 678888877764 6899999999987
Q ss_pred H-HHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchh
Q 026925 120 A-VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCA 198 (230)
Q Consensus 120 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~ 198 (230)
. +.. ..+.++..+.+... .....++.+.++.++ +|...+..+++..+ .++||||++++
T Consensus 281 ~~~~~---~l~~~ll~~~v~~~---------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~ 339 (1176)
T PRK09401 281 RGNRV---KLFRELLGFEVGSP---------------VFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDK 339 (1176)
T ss_pred cchHH---HHhhccceEEecCc---------------ccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEeccc
Confidence 4 332 23445554555444 345678888888766 78888888887765 58999999988
Q ss_pred H---HHHHHHHhhhhhccCCceEEeccCCC
Q 026925 199 C---VDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 199 ~---~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
. |++++.+|... |+++..+||+|
T Consensus 340 ~~~~ae~l~~~L~~~----gi~v~~~hg~l 365 (1176)
T PRK09401 340 GKEYAEELAEYLEDL----GINAELAISGF 365 (1176)
T ss_pred ChHHHHHHHHHHHHC----CCcEEEEeCcH
Confidence 7 99999999998 99999999998
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.93 E-value=1.2e-24 Score=196.38 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=141.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC---cccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~---~~~~~~l 77 (230)
.+|||+||||||+|+.+.++++. . .++++..+.|+.+.. +...+ ..+++|+|+||+++...+.... ...++++
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~~~-~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTPTE-ERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCCHH-HHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 37999999999999999999997 2 378888888887644 33444 5679999999999875332101 1237899
Q ss_pred cEEEEeccccccccccHHHHHHHHHh-------CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISR-------LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~-------l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++|+||||.+.+ .|+..+..++++ .+.+.|++++|||+++..+ ++..++..|..+ +...
T Consensus 159 ~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~---------- 225 (742)
T TIGR03817 159 RYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTED---------- 225 (742)
T ss_pred CEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCC----------
Confidence 9999999999865 366655444433 4567899999999998754 677778777544 2222
Q ss_pred hccccCCCCcc-ceEEEEEcC----------------CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhcc
Q 026925 151 QQLASSKTPLG-LHLEYLECE----------------PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVL 213 (230)
Q Consensus 151 ~~~~~~~~~~~-i~~~~~~~~----------------~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~ 213 (230)
..+.. ....+.... ..++...+..+++. +.++||||||++.|+.++..|.+.+..
T Consensus 226 ------~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~ 297 (742)
T TIGR03817 226 ------GSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGE 297 (742)
T ss_pred ------CCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 11111 122111111 01344556666653 569999999999999999998875211
Q ss_pred ----CCceEEeccCCCCCCC
Q 026925 214 ----KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ----~g~~~~~lh~~~~~~e 229 (230)
.+.++..+||+++++|
T Consensus 298 ~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 298 VDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred hccccccchhheecCCCHHH
Confidence 1567889999999864
No 39
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.93 E-value=2.9e-24 Score=201.71 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=130.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhh-----------hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIS-----------TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~-----------~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~ 69 (230)
.+|||+|+|+|++|+++.++.... ..+++++...+|+.+..++.+.+ ++++||||+||+++..++.+.
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll-~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT-RNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh-cCCCCEEEecHHHHHHHHhhh
Confidence 379999999999999999875221 12378999999999887766555 578999999999999988752
Q ss_pred CcccCCcccEEEEeccccccccc----cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcc
Q 026925 70 DVLDFRNLEILVLDEADRLLDMG----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKS 143 (230)
Q Consensus 70 ~~~~~~~l~~lVvDEad~l~~~~----~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~ 143 (230)
....+++++++||||+|.+.+.. +...++++...++.+.|+|++|||+++ .+.+.+ |+. .+..+...+.
T Consensus 118 ~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~~~~--- 192 (1490)
T PRK09751 118 ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTVVNPPA--- 192 (1490)
T ss_pred hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEEECCCC---
Confidence 33468999999999999998653 345667777777788999999999987 456654 443 3444432111
Q ss_pred cccccchhccccCCCCccceEEEEEcCCC--------------------CcHH-HHHHHHHh-CCCCeEEEEcCchhHHH
Q 026925 144 HHVSASSQQLASSKTPLGLHLEYLECEPD--------------------EKPS-QLVDLLIK-NKSKKIIIYFMTCACVD 201 (230)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~k~~-~l~~ll~~-~~~~~~lIF~~t~~~~~ 201 (230)
..+..+. .++...+. .... ....++.. ...+++||||||++.|+
T Consensus 193 -------------~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE 258 (1490)
T PRK09751 193 -------------MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAE 258 (1490)
T ss_pred -------------CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHH
Confidence 1111122 11111110 0001 11123321 24578999999999999
Q ss_pred HHHHHhhhh
Q 026925 202 YWGVVLPRL 210 (230)
Q Consensus 202 ~l~~~L~~~ 210 (230)
.++..|++.
T Consensus 259 ~La~~L~~~ 267 (1490)
T PRK09751 259 KLTARLNEL 267 (1490)
T ss_pred HHHHHHHHh
Confidence 999999875
No 40
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.2e-23 Score=196.34 Aligned_cols=197 Identities=21% Similarity=0.237 Sum_probs=145.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEE---EEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV---LLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~---~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
.++||+||++||.|+++.+++++... ++++. .++|+.+..++. ..+.+++++|+||||+++.+.+.. +..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~ 198 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP 198 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC
Confidence 47999999999999999999998765 55433 467877665443 344445699999999999888765 222
Q ss_pred CcccEEEEeccccccc-----------cccHHH-HHHHH----------------------HhCCCCCc--EEEEeec-C
Q 026925 75 RNLEILVLDEADRLLD-----------MGFQKQ-ISYII----------------------SRLPKLRR--TGLFSAT-Q 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~-----------~~~~~~-~~~i~----------------------~~l~~~~q--~i~~SAt-~ 117 (230)
+++++|+||||+|++ .||.++ +..++ +.++...| +++|||| .
T Consensus 199 -~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 199 -KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred -CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 899999999999998 467653 45543 33455555 5779999 5
Q ss_pred chHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCch
Q 026925 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTC 197 (230)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~ 197 (230)
|..+.. .++.++..+.+... .....++.+.+...+. +...+.++++..+ .++||||+|+
T Consensus 278 p~~~~~---~l~r~ll~~~v~~~---------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~ 336 (1171)
T TIGR01054 278 PRGKRA---KLFRELLGFEVGGG---------------SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSID 336 (1171)
T ss_pred ccccHH---HHcccccceEecCc---------------cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEecc
Confidence 654332 34556555665544 4566788887775443 3566778887664 6899999999
Q ss_pred ---hHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 198 ---ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 198 ---~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.|++++..|.+. |+++..+||++++
T Consensus 337 ~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 337 YGKEKAEEIAEFLENH----GVKAVAYHATKPK 365 (1171)
T ss_pred ccHHHHHHHHHHHHhC----CceEEEEeCCCCH
Confidence 9999999999988 9999999999964
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.6e-23 Score=181.40 Aligned_cols=200 Identities=17% Similarity=0.178 Sum_probs=141.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL-DFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~ 76 (230)
.+|||+||++|+.|....+..+ ++.+..+.++....+.. ..+..+.++|+++||+++....+....+ ...+
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~ 127 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKG 127 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCC
Confidence 3799999999999988777654 67777787776654332 2334567899999999975422110122 5688
Q ss_pred ccEEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccc
Q 026925 77 LEILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSAS 149 (230)
Q Consensus 77 l~~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~ 149 (230)
++++||||||++.+|| |++.+..+ ...+ +..+++++|||.++.+.......+. +|..+....
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---------- 196 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---------- 196 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC----------
Confidence 9999999999999987 67776654 3344 4678999999999988776666543 444432211
Q ss_pred hhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 150 SQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...++...+.. ...+....+..++. ...++++||||+|+++|+.++..|.+. |+++..+||+|+++
T Consensus 197 --------~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~ 263 (470)
T TIGR00614 197 --------DRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEIS 263 (470)
T ss_pred --------CCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHH
Confidence 12333322222 22245566677776 456667799999999999999999988 99999999999976
Q ss_pred C
Q 026925 229 G 229 (230)
Q Consensus 229 e 229 (230)
|
T Consensus 264 e 264 (470)
T TIGR00614 264 A 264 (470)
T ss_pred H
Confidence 4
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=3.9e-23 Score=192.47 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=146.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++||+||++||.|+++.+++....+ ++++..+.++.+..++...+ ..+++||+||||+.+ . ..+.++++
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L 723 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDL 723 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhC
Confidence 58999999999999999999877666 68888888887766655443 236799999999632 2 44678899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++||||+|++ ++. ....++.++.+.|+++||||..+....+...++.++..+...+.
T Consensus 724 ~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~----------------- 781 (1147)
T PRK10689 724 GLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 781 (1147)
T ss_pred CEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC-----------------
Confidence 99999999997 332 24456778889999999999988888888888889888765443
Q ss_pred CCccceEEEEEcCCC-CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPD-EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....+++++...... .+...+.++. .+++++||||+++.++.++..|.+. .++.++.++||+|+++|
T Consensus 782 ~r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~--~p~~~v~~lHG~m~q~e 849 (1147)
T PRK10689 782 RRLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERE 849 (1147)
T ss_pred CCCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHh--CCCCcEEEEeCCCCHHH
Confidence 122345544443221 1222233332 3568999999999999999999987 46789999999999864
No 43
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=3.4e-23 Score=197.23 Aligned_cols=199 Identities=21% Similarity=0.170 Sum_probs=150.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
++|||+||++|+.|+.+.++.++.... ++++..++|+.+..++.. .+.++.++|+|+||+++.+.+.. . ...+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l--~~~~ 200 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-M--KHLK 200 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-H--hhCC
Confidence 479999999999999999999987652 567788889887765533 34445699999999999887764 2 2278
Q ss_pred ccEEEEecccccccc-----------ccHHHHHH----HHH----------------------hCCCCCc-EEEEeecCc
Q 026925 77 LEILVLDEADRLLDM-----------GFQKQISY----IIS----------------------RLPKLRR-TGLFSATQT 118 (230)
Q Consensus 77 l~~lVvDEad~l~~~-----------~~~~~~~~----i~~----------------------~l~~~~q-~i~~SAt~~ 118 (230)
++++||||||+|++| ||.+++.. |++ .++...| .+++|||.+
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 999999999999873 77777754 332 2345556 677999998
Q ss_pred hHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchh
Q 026925 119 EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCA 198 (230)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~ 198 (230)
+. .....++.++..+.+... .....++.+.++..+..+| ..+.++++.. +..+||||+|++
T Consensus 281 ~r--~~~~~l~~~~l~f~v~~~---------------~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~ 341 (1638)
T PRK14701 281 AK--GDRVKLYRELLGFEVGSG---------------RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDE 341 (1638)
T ss_pred ch--hHHHHHhhcCeEEEecCC---------------CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccc
Confidence 63 222234567776666555 4466788888887765555 5788888876 468999999987
Q ss_pred H---HHHHHHHhhhhhccCCceEEeccCCC
Q 026925 199 C---VDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 199 ~---~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
. |++++..|.+. |+++..+||+.
T Consensus 342 ~~e~ae~la~~L~~~----Gi~a~~~h~~R 367 (1638)
T PRK14701 342 GAEKAEEIEKYLLED----GFKIELVSAKN 367 (1638)
T ss_pred cchHHHHHHHHHHHC----CCeEEEecchH
Confidence 5 58999999998 99999999973
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=7.6e-23 Score=186.97 Aligned_cols=196 Identities=18% Similarity=0.257 Sum_probs=143.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|++..++++...+ ++++..+.|+.+..+. ...+..+++||+||||. ++. +.+.++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~--~~v~f~~L 574 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQ--KDVKFKDL 574 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hhh--CCCCcccC
Confidence 58999999999999999999988877 6898888887664433 33444467999999994 232 55778999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++||||+|++ .......++.++...|+++||||..+....+....+.++..+...+. .
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~---------------~- 633 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE---------------D- 633 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC---------------C-
Confidence 99999999985 33345566777888999999999887777776667777777665433 1
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+++.......-...+...+ ..+++++||||+.++++.++..|.+. .+++++..+||+|+++|
T Consensus 634 -R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~--~p~~~v~~lHG~m~~~e 700 (926)
T TIGR00580 634 -RLPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLREL--VPEARIAIAHGQMTENE 700 (926)
T ss_pred -ccceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHh--CCCCeEEEecCCCCHHH
Confidence 123444444322211112222222 24578999999999999999999986 45889999999999764
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=99.91 E-value=3.3e-23 Score=187.62 Aligned_cols=198 Identities=16% Similarity=0.206 Sum_probs=141.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+|+|+++||.|+++.+..+. .+ ++++..++|+.+...+ . .++++|+|+||+++..++++ +...+++++++|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~-g~~v~~~~Gd~~~~~~---~-~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvV 143 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KL-GLRVAMTTGDYDSTDE---W-LGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVV 143 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hc-CCEEEEEeCCCCCchh---h-hccCCEEEEcHHHHHHHHhC-CchhhhcCCEEE
Confidence 7999999999999999999874 34 7899999998765332 2 25789999999999999887 666789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.+.+++..++.++..++...|++++|||+++ ...+.. |+...... .. ..|..
T Consensus 144 iDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~---~~----------------~rpv~ 202 (720)
T PRK00254 144 ADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV---SD----------------WRPVK 202 (720)
T ss_pred EcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc---CC----------------CCCCc
Confidence 99999998888999999999999989999999999986 355554 55432211 01 01111
Q ss_pred c-----eEEEEEcCCC--Cc-----HHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc----c------------
Q 026925 162 L-----HLEYLECEPD--EK-----PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV----L------------ 213 (230)
Q Consensus 162 i-----~~~~~~~~~~--~k-----~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~----~------------ 213 (230)
+ .+.+...... .+ ...+.+++. .++++||||+|++.|+.++..|..... .
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (720)
T PRK00254 203 LRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADS 280 (720)
T ss_pred ceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1 1111111111 11 123334443 457999999999999998877754210 0
Q ss_pred -------------CCceEEeccCCCCCCC
Q 026925 214 -------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 -------------~g~~~~~lh~~~~~~e 229 (230)
-+..++++||+|++++
T Consensus 281 ~~~~~~~~~L~~~l~~gv~~hHagl~~~e 309 (720)
T PRK00254 281 LEENPTNEKLKKALRGGVAFHHAGLGRTE 309 (720)
T ss_pred HhcCCCcHHHHHHHhhCEEEeCCCCCHHH
Confidence 0235899999999764
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=6.9e-23 Score=186.46 Aligned_cols=202 Identities=18% Similarity=0.178 Sum_probs=141.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-----cCCcEEEEcChHHHH---HHhhCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYD---IMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~~Iiv~TP~~l~~---~l~~~~~~ 72 (230)
++|||+|+++|+.+....+.. . ++++..+.++....++...+.. ++++||++||+++.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~---~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQ---A--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHh---C--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 479999999999753333332 2 7889999998887766555432 578999999999853 22210111
Q ss_pred -cCCcccEEEEeccccccccc--cHHHHHHH--HHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccc
Q 026925 73 -DFRNLEILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVS 147 (230)
Q Consensus 73 -~~~~l~~lVvDEad~l~~~~--~~~~~~~i--~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 147 (230)
....+.++||||||++++|| |++.+..+ +.......+++++|||.++.+.......+.....+.+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S------- 649 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS------- 649 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-------
Confidence 23558899999999999998 88887764 3344457889999999999988866665543322222222
Q ss_pred cchhccccCCCCccceEEEEEcCCCC-cHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 148 ASSQQLASSKTPLGLHLEYLECEPDE-KPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....++...+ .+... ....+..++... ...+.||||+|++.|+.++..|... |+++..+||+|
T Consensus 650 ---------f~RpNL~y~V--v~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~----Gika~~YHAGL 714 (1195)
T PLN03137 650 ---------FNRPNLWYSV--VPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF----GHKAAFYHGSM 714 (1195)
T ss_pred ---------cCccceEEEE--eccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC----CCCeeeeeCCC
Confidence 1223443322 23332 245666666543 3568999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
++++
T Consensus 715 s~ee 718 (1195)
T PLN03137 715 DPAQ 718 (1195)
T ss_pred CHHH
Confidence 8754
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=7.3e-23 Score=188.03 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=136.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHh-------h----hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC
Q 026925 1 MGMIISPTRELSSQIYHVAQPF-------I----STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l-------~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~ 69 (230)
++|||+|||+||+|+++.+... + ..++++++...+|+.+..+....+ ..+++|+|+||+++..++..
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l-~~~p~IlVtTPE~L~~ll~~- 163 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML-KKPPHILITTPESLAILLNS- 163 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-hCCCCEEEecHHHHHHHhcC-
Confidence 3799999999999998866532 2 233467889999998876665555 67899999999999888865
Q ss_pred Ccc--cCCcccEEEEeccccccccccHHHH----HHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC-----CeEEEEe
Q 026925 70 DVL--DFRNLEILVLDEADRLLDMGFQKQI----SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN-----PVRVEVR 138 (230)
Q Consensus 70 ~~~--~~~~l~~lVvDEad~l~~~~~~~~~----~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~-----~~~i~~~ 138 (230)
+.+ .+++++++|+||+|.+.+..++..+ .++....+...|++++|||+++ ...+....... +..+.+.
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv 242 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV 242 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE
Confidence 444 4789999999999999876655544 4444444467899999999986 24444332211 2111111
Q ss_pred ccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhcc--C
Q 026925 139 AESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVL--K 214 (230)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~--~ 214 (230)
.....+...... ..+ ... ............+...+.. ...+++||||||++.|+.++..|.+.... .
T Consensus 243 ~~~~~k~~~i~v------~~p--~~~-l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~ 313 (876)
T PRK13767 243 DARFVKPFDIKV------ISP--VDD-LIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYD 313 (876)
T ss_pred ccCCCccceEEE------ecc--Ccc-ccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhcc
Confidence 110000000000 000 000 0111112222222233321 23568999999999999999999875211 2
Q ss_pred CceEEeccCCCCCCC
Q 026925 215 SLSLIPLHGKMKQVG 229 (230)
Q Consensus 215 g~~~~~lh~~~~~~e 229 (230)
+..+.++||+|++++
T Consensus 314 ~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 314 EDNIGAHHSSLSREV 328 (876)
T ss_pred ccceeeeeCCCCHHH
Confidence 478999999999764
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=2.2e-22 Score=178.89 Aligned_cols=197 Identities=19% Similarity=0.201 Sum_probs=147.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++||+|+++|+.|..+.++.+ ++.+..+.++.+..+... .+..++.+|+++||+++...... ..+...+++
T Consensus 56 ~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 56 TVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 689999999999988877764 678888888776554333 34457899999999998653322 334567899
Q ss_pred EEEEeccccccccc--cHHHHHHHH---HhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMG--FQKQISYII---SRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~--~~~~~~~i~---~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++||||||++.+|| |++.+..+. ..++ ..+++++|||.++.+......++. ++..+. ..
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~----------- 195 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI--TS----------- 195 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cC-----------
Confidence 99999999999887 777776654 3444 445999999999998877777665 333222 11
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....++. +......++...+..++....+.++||||+|++.|+.++..|... |+++..+||+|++++
T Consensus 196 -----~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~ 262 (591)
T TIGR01389 196 -----FDRPNLR--FSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKV 262 (591)
T ss_pred -----CCCCCcE--EEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHH
Confidence 1223333 223345567788888888777889999999999999999999988 999999999998753
No 49
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=1.2e-22 Score=184.54 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=125.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.++++.. + ++++..++|+.....+ . .+.++|+|+||+++..++++ +...+++++++|
T Consensus 70 al~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~--l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvV 142 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--W--LGDNDIIVATSEKVDSLLRN-GAPWLDDITCVV 142 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--c--cCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEE
Confidence 79999999999999999998753 3 7899999998764332 2 25689999999999999987 556689999999
Q ss_pred EeccccccccccHHHHHHHHHhC---CCCCcEEEEeecCchHHHHHHHhccCC--------CeEEEEeccCcccccccch
Q 026925 82 LDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRN--------PVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l---~~~~q~i~~SAt~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~ 150 (230)
+||+|.+.+.+++..++.++.++ +...|++++|||+++. ..+.. |+.. |+.+...... ...
T Consensus 143 iDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~------~~~ 214 (737)
T PRK02362 143 VDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFY------GGA 214 (737)
T ss_pred EECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEec------CCe
Confidence 99999998888888888776554 4678999999999863 44443 3321 1111100000 000
Q ss_pred hccccCCCCccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 151 QQLASSKTPLGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..... .+..+.... ......+.+.++ .++++||||+|++.|+.++..|...
T Consensus 215 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 215 -----IHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred -----ecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 00000 111111111 122333444443 5579999999999999999998765
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=4.2e-22 Score=177.07 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=142.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||++|+++|+.|+.+.+..+ ++.+..+.++....+... .+..+..+++++||+++....-. ..+...++
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l 140 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNP 140 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCC
Confidence 3789999999999988887764 567777777766554433 33346789999999998632111 22445678
Q ss_pred cEEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhcc--CCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++||||||++.+|| |.+.+..+ ...+ +..+++++|||.++.+.......+ .+|..... .
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~---------- 207 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--S---------- 207 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--C----------
Confidence 999999999999987 66665544 3344 478899999999988766444443 34443221 1
Q ss_pred hccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 151 QQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....++. +.......+...+...+....++++||||+|+++|+.++..|.+. |+++..+||+|++++
T Consensus 208 ------~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~ 274 (607)
T PRK11057 208 ------FDRPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDV 274 (607)
T ss_pred ------CCCCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHH
Confidence 1122332 233344556677788888778889999999999999999999988 999999999998753
No 51
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.89 E-value=4.7e-23 Score=168.65 Aligned_cols=211 Identities=27% Similarity=0.431 Sum_probs=173.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhC--CCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTL--PDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
.+||+-|+||||+|+++.+++|.-.. |.++-.++.||.-...|-+.+ ..+.||+||||+++.+++.. +.+.+..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql-~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQL-KDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHh-hcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 37999999999999999998886544 556777888888888888888 58899999999999999998 889999999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCC------CCcEEEEeecCc-hHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPK------LRRTGLFSATQT-EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~------~~q~i~~SAt~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++|+||+|.++..+|-+.+.++...+|+ ..|.+.+|||+. -++..+.++.|+-|..+....+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge----------- 434 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE----------- 434 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-----------
Confidence 9999999999999999999999888873 568999999985 3577788888899998888777
Q ss_pred ccccCCCCccceEEEEEcCCC------------------------------CcH---------HHHHHHHHhCCCCeEEE
Q 026925 152 QLASSKTPLGLHLEYLECEPD------------------------------EKP---------SQLVDLLIKNKSKKIII 192 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~------------------------------~k~---------~~l~~ll~~~~~~~~lI 192 (230)
+..|+.++|.+..+.+. +.. +.-...++++...++||
T Consensus 435 ----D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 435 ----DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred ----cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 67777777766655421 111 22233445678889999
Q ss_pred EcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 193 YFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 193 F~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
||.|+.+|+.|.+++.+.. ...+.+.|+||+..+.|
T Consensus 511 fcrtk~dcDnLer~~~qkg-g~~~scvclhgDrkP~E 546 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKG-GKHYSCVCLHGDRKPDE 546 (725)
T ss_pred EEeccccchHHHHHHHHcC-CccceeEEEecCCChhH
Confidence 9999999999999999874 45689999999996544
No 52
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=4.9e-23 Score=173.74 Aligned_cols=209 Identities=24% Similarity=0.286 Sum_probs=172.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhh--hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFI--STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~--~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~ 76 (230)
+++|+.|||+||.|++.+++++. ... +.++...............+....+|++++||.++..++.. +. ++++.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~ 288 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSK 288 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhhe
Confidence 47999999999999999999997 444 45555554443333333444456789999999999999987 44 78999
Q ss_pred ccEEEEecccccccc-ccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccc
Q 026925 77 LEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 77 l~~lVvDEad~l~~~-~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
+..+|+||||++++. .|...+-.|.+.+. +...+-+||||++.++++++...+.++..+.++..
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------- 354 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------- 354 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------
Confidence 999999999999998 89999999988875 46788999999999999999999999998887766
Q ss_pred cCCCCccceEEEEEc-CCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 155 SSKTPLGLHLEYLEC-EPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
......+.|....+ .+..|...+..++...-..|++||+.+.++|..|...|.. ..++++.++||+.++.|
T Consensus 355 -~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 355 -NSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQ 426 (593)
T ss_pred -hhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhH
Confidence 44456665555555 5677999999999988888999999999999999999941 34999999999988765
No 53
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.87 E-value=9e-22 Score=165.96 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=150.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
|+|+|.-+||+|-+..++.--+.+ ++++..-.|.+-...... .-....+||||||.+-+..+++. + -++.++.+
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-Ccccccce
Confidence 789999999999999999877776 777765555332222111 00124589999999999988886 4 78999999
Q ss_pred EEEeccccccccccHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccC
Q 026925 80 LVLDEADRLLDMGFQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (230)
+||||+|.+-+...++.+.-+ ++++.+..|++.+|||..+. .++++.+--.++...
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-------------------- 400 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-------------------- 400 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--------------------
Confidence 999999988775544444333 34455689999999999865 777777644544432
Q ss_pred CCCccc-eEEEEEcCCCCcHHHHHHHHHhC--------CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 157 KTPLGL-HLEYLECEPDEKPSQLVDLLIKN--------KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 157 ~~~~~i-~~~~~~~~~~~k~~~l~~ll~~~--------~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..|-.+ .|.++.-++.+|++.+..+.+.. -..+||||++|++.|.+++.+|... |+++.++|+||++
T Consensus 401 ~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k----G~~a~pYHaGL~y 476 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK----GLKAAPYHAGLPY 476 (830)
T ss_pred CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC----CcccccccCCCcH
Confidence 234444 56666666899999999998632 3358999999999999999999988 9999999999997
Q ss_pred CC
Q 026925 228 VG 229 (230)
Q Consensus 228 ~e 229 (230)
.|
T Consensus 477 ~e 478 (830)
T COG1202 477 KE 478 (830)
T ss_pred HH
Confidence 65
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.87 E-value=5.6e-21 Score=169.55 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=138.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhh--CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIST--LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+++|++||+|||.|+...+.+..+. +++..+....||.+. ...... .++.+|+|+|+.. ....+++++
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~-~k~~~Ilv~T~~L--------~l~~L~~v~ 293 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTN-PKPYGLVFSTHKL--------TLNKLFDYG 293 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcc-cCCCCEEEEeCcc--------cccccccCC
Confidence 3789999999999999998876643 335677788888763 222222 2478999999852 112478899
Q ss_pred EEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
++|+||||.+...+ +.+..+++.. +..+|+++||||+++++..+ ..++++|..+.+...
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----------------- 353 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----------------- 353 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC-----------------
Confidence 99999999987664 4445555444 34469999999999888877 578889888776422
Q ss_pred CCccceEEEEEcCC----------CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 158 TPLGLHLEYLECEP----------DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 158 ~~~~i~~~~~~~~~----------~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
+...+++++..... .++...+..+... ..++++||||+++++|+.++..|.+. ..|+++.++||+|
T Consensus 354 t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~--~~~~~v~~LHG~L 431 (675)
T PHA02653 354 TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKR--LPIYDFYIIHGKV 431 (675)
T ss_pred cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhh--cCCceEEeccCCc
Confidence 23455665554321 1122222222221 23468999999999999999999876 2368999999999
Q ss_pred CCC
Q 026925 226 KQV 228 (230)
Q Consensus 226 ~~~ 228 (230)
+++
T Consensus 432 sq~ 434 (675)
T PHA02653 432 PNI 434 (675)
T ss_pred CHH
Confidence 974
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=1.2e-20 Score=169.68 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=131.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++++..+ ++++..++|+.+..+. ...+.++.++|+||||+.+. ..+.++++
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l 384 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNL 384 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhccc
Confidence 48999999999999999999999877 7999999999875433 33454567999999998753 34567899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++- ......+...+...+++++|||..+....+......++..+...+.
T Consensus 385 ~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~----------------- 442 (681)
T PRK10917 385 GLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP----------------- 442 (681)
T ss_pred ceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC-----------------
Confidence 999999999862 2223334444567899999999876554444322223223221111
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....+...+... ++...+...+.. ..+++++|||++. ..++.++..|.+. ..++++..+||+|++
T Consensus 443 ~r~~i~~~~~~~---~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~m~~ 517 (681)
T PRK10917 443 GRKPITTVVIPD---SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHGRMKP 517 (681)
T ss_pred CCCCcEEEEeCc---ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeCCCCH
Confidence 122344443332 222333333332 3567999999954 4567788888876 345899999999987
Q ss_pred CC
Q 026925 228 VG 229 (230)
Q Consensus 228 ~e 229 (230)
+|
T Consensus 518 ~e 519 (681)
T PRK10917 518 AE 519 (681)
T ss_pred HH
Confidence 64
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.87 E-value=4.3e-21 Score=173.06 Aligned_cols=200 Identities=17% Similarity=0.208 Sum_probs=135.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++|+++||.|+++.+.++.. . +.++...+|+...... . .+.+||+|+||+++..++.+ ....+++++++|
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~--~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvV 140 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--F--IKRYDVVILTSEKADSLIHH-DPYIINDVGLIV 140 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--h--hccCCEEEECHHHHHHHHhC-ChhHHhhcCEEE
Confidence 78999999999999999998753 3 7888888887654322 1 25689999999999998877 556689999999
Q ss_pred EeccccccccccHHHHHHHHHh---CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISR---LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~---l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.+.+.+++..++.++.. ++...|++++|||+++ ...+.+ |+..+.. . .. ..
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~-~--~~----------------~r 199 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLI-K--SN----------------FR 199 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCcc-C--CC----------------CC
Confidence 9999999887777777776544 4567899999999986 355554 4432211 0 00 01
Q ss_pred CccceEEE-----EEcCCCCc-HHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccC----------------
Q 026925 159 PLGLHLEY-----LECEPDEK-PSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLK---------------- 214 (230)
Q Consensus 159 ~~~i~~~~-----~~~~~~~k-~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~---------------- 214 (230)
+..+.... ...+...+ ...+..++.. ..++++||||++++.|+.++..|.+.....
T Consensus 200 ~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 279 (674)
T PRK01172 200 PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDS 279 (674)
T ss_pred CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHH
Confidence 11111000 00111111 1113333332 356799999999999999999987652100
Q ss_pred -----CceEEeccCCCCCCC
Q 026925 215 -----SLSLIPLHGKMKQVG 229 (230)
Q Consensus 215 -----g~~~~~lh~~~~~~e 229 (230)
...++++||+|+++|
T Consensus 280 L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 280 LNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred HHHHHhcCEEEecCCCCHHH
Confidence 124788999999864
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.87 E-value=3.8e-21 Score=171.46 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=149.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc--CCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~ 78 (230)
.+|+|+|-|+|.+.+...++..+..+ |+.+...+|+.+..+..... .++|||+++|||+|..++.. +.+. +++++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPEsL~lll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPESLAILLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChhHHHHHhcC-HHHHHHhcCCc
Confidence 37999999999999999999999988 99998888888876666555 78999999999999888876 4443 89999
Q ss_pred EEEEeccccccccccHH----HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC--CeEEEEeccCcccccccchhc
Q 026925 79 ILVLDEADRLLDMGFQK----QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~----~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 152 (230)
++||||+|.+.....+. .++++...-+ ..|.|++|||..+ ....++...+. +..|.-...
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~------------ 217 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA------------ 217 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc------------
Confidence 99999999998654333 3455554455 8999999999985 35555554444 333322222
Q ss_pred cccCCCCccceEEEEEcCC---------CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 153 LASSKTPLGLHLEYLECEP---------DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
..+....+..... ......+.++++++. .+|||+||+..||.++..|++.. +..+..+||
T Consensus 218 ------~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~---~~~i~~HHg 286 (814)
T COG1201 218 ------AKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG---PDIIEVHHG 286 (814)
T ss_pred ------CCcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc---CCceeeecc
Confidence 1122222222221 123455666666655 89999999999999999999983 489999999
Q ss_pred CCCCCC
Q 026925 224 KMKQVG 229 (230)
Q Consensus 224 ~~~~~e 229 (230)
++++++
T Consensus 287 SlSre~ 292 (814)
T COG1201 287 SLSREL 292 (814)
T ss_pred cccHHH
Confidence 999764
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=1.8e-20 Score=169.85 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=142.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|+.|||++|.|+++.+.+..+...+..++...++... . +.+.+|+|+||+.+++++.. ...+++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~------~-s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~V 117 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK------V-SRRTRLEVVTEGILTRMIQD--DPELDGVGAL 117 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc------c-CCCCcEEEECCcHHHHHHhh--CcccccCCEE
Confidence 3799999999999999988654432225566665554321 1 45678999999999999875 3578999999
Q ss_pred EEeccc-cccccccHH-HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEAD-RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad-~l~~~~~~~-~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||+| ++++.++.- .+..+.+.++.+.|+++||||++... ...|+.++..+.+...
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr------------------ 176 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR------------------ 176 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc------------------
Confidence 999999 577765543 33556667788999999999999753 3567776655554322
Q ss_pred CccceEEEEEcCCCCcH-----HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKP-----SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...++++|......++. ..+..++.. ..+++||||+++++++.++..|.+.. ..++.+.++||+|+++|
T Consensus 177 ~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~-~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 177 SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL-DSDVLICPLYGELSLAA 250 (819)
T ss_pred ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc-CCCcEEEEecCCCCHHH
Confidence 12356666666555443 234444443 35689999999999999999998742 23799999999999754
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.86 E-value=1.8e-20 Score=170.06 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=142.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++|||++|.|+.+.+.+..+...+..++...++.+.. +.+.+|+|+||+++.+++.. ...+++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~I 120 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQR--DPELSGVGLV 120 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEE
Confidence 37999999999999999986554332366777777665421 34567999999999999875 3579999999
Q ss_pred EEecccc-cccccc-HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~-l~~~~~-~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||+|. .++..+ ...+..+.+.++++.|+++||||++.. . ...++.++..+.+...
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~gr------------------ 179 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEGR------------------ 179 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH--H-HHHhcCCCCEEEecCc------------------
Confidence 9999996 444332 233455677788899999999999864 2 3567776665544322
Q ss_pred CccceEEEEEcCCCCcHH-----HHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPS-----QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++|...+..++.. .+..++.. ..+.+||||+++++++.++..|.+.. ..++.+..+||+|+++|
T Consensus 180 ~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 180 SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRV-ASDVLLCPLYGALSLAE 253 (812)
T ss_pred cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhc-cCCceEEEeeCCCCHHH
Confidence 123566676666555553 34444443 35789999999999999999998731 23789999999999753
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.86 E-value=1.1e-19 Score=152.16 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=140.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhC---CCceEEEEEcCcchHH-H------------------HHHHHhcCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTL---PDVKSVLLVGGVEVKA-D------------------VKKIEEEGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~---~~~~v~~~~~~~~~~~-~------------------~~~l~~~~~~Iiv~TP 59 (230)
+++++|+++|++|+++.++++...+ .+..+..+.|...... . .......+++|+++||
T Consensus 42 ~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p 121 (357)
T TIGR03158 42 TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNP 121 (357)
T ss_pred EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecH
Confidence 6899999999999999999987543 2466666666532210 0 0111124789999999
Q ss_pred hHHHHHHhhC---Ccc----cCCcccEEEEecccccccccc-----HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 60 GRLYDIMERM---DVL----DFRNLEILVLDEADRLLDMGF-----QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 60 ~~l~~~l~~~---~~~----~~~~l~~lVvDEad~l~~~~~-----~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
+.+..+++.. +.. .+.+++++|+||+|.+-.++. .-....+++......+++++|||+++.+...+..
T Consensus 122 ~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 122 DIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHh
Confidence 9998776531 111 157899999999998764431 1233334444444579999999999988887766
Q ss_pred c--cCCCeEEEEeccCcc---cccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-------hCCCCeEEEEcC
Q 026925 128 G--LRNPVRVEVRAESKS---HHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-------KNKSKKIIIYFM 195 (230)
Q Consensus 128 ~--~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lIF~~ 195 (230)
. ++.+.....+..-.. ..+.......+-......+.+.+.. ....|...+..+++ ...++++|||||
T Consensus 202 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~n 280 (357)
T TIGR03158 202 AKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILD 280 (357)
T ss_pred ccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEEC
Confidence 4 455543322221000 0000000000000111356666665 44455554444333 235679999999
Q ss_pred chhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 196 TCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 196 t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
|++.|++++..|++. ..++++..+||.+++++
T Consensus 281 t~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 281 SLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKD 312 (357)
T ss_pred CHHHHHHHHHHHhhh--CCCceEEeeecCCCHHH
Confidence 999999999999976 22468889999998753
No 61
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.85 E-value=3.4e-20 Score=143.67 Aligned_cols=131 Identities=46% Similarity=0.767 Sum_probs=118.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+.+.++.+.... ++++..+.|+.+..+....+ .++++|+|+||+++..++.. ....+++++++|
T Consensus 72 viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lI 148 (203)
T cd00268 72 ALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLER-GKLDLSKVKYLV 148 (203)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCCChhhCCEEE
Confidence 7999999999999999999998765 78999999998877776666 46899999999999999987 668899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
+||+|.+.+.++...+..+.+.++...|++++|||++++...+...++.+|..+
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998889999999999999999999999999999999999999988765
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.4e-20 Score=156.67 Aligned_cols=205 Identities=16% Similarity=0.081 Sum_probs=130.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH------------HHHHHHHh-----cCCcEEEEcChHHHH
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK------------ADVKKIEE-----EGANLLIGTPGRLYD 64 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~------------~~~~~l~~-----~~~~Iiv~TP~~l~~ 64 (230)
+++++|+++|+.|+++.+..+.+. .+..++++.... ........ ..++|+|+||+++..
T Consensus 32 ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 32 VIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred EEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 789999999999999999997532 334444432210 11111101 236799999999988
Q ss_pred HHhh-CCc--ccCC--cccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 65 IMER-MDV--LDFR--NLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 65 ~l~~-~~~--~~~~--~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
.+.. .+. ..+. ..+++|+||+|.+.++++.. +..+++.++ .+.|++++|||+++.+..+...+...+......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~ 186 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD 186 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC
Confidence 7654 111 1122 23789999999998765443 555555554 478999999999987777776654332111110
Q ss_pred ccCcccccccchhccccCCCCccceEEEEEc--CCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCC
Q 026925 139 AESKSHHVSASSQQLASSKTPLGLHLEYLEC--EPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKS 215 (230)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g 215 (230)
.. .......+.+..+ ....+...+..+++.. .++++||||||+++|+.++..|.+. ..+
T Consensus 187 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~--~~~ 248 (358)
T TIGR01587 187 LK----------------EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN--APE 248 (358)
T ss_pred Cc----------------cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhh--cCC
Confidence 00 0001112222222 2345667777777643 5679999999999999999999887 122
Q ss_pred ceEEeccCCCCCCC
Q 026925 216 LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 ~~~~~lh~~~~~~e 229 (230)
.++..+||++++++
T Consensus 249 ~~~~~~h~~~~~~~ 262 (358)
T TIGR01587 249 EEIMLLHSRFTEKD 262 (358)
T ss_pred CeEEEEECCCCHHH
Confidence 36999999998753
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=1.8e-19 Score=160.94 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=129.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH---HHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++++..+ ++++..++|+....+ ....+.+++++|+||||+.+. ..+.++++
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l 358 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRL 358 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------cccccccc
Confidence 58999999999999999999998877 799999999877654 334454567999999998753 23567899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
+++|+||+|++-... . ..+....+ ...+++++|||..+....+.....-+...+...+.
T Consensus 359 ~lvVIDEaH~fg~~q-r---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--------------- 419 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQ-R---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--------------- 419 (630)
T ss_pred ceEEEechhhccHHH-H---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC---------------
Confidence 999999999863221 1 22333332 26789999999766444333211111112211111
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....+...+.. ...+ ..+...+.. ..+++++|||++. ..|+.++..|.+. ..++++..+||+|
T Consensus 420 --~r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m 492 (630)
T TIGR00643 420 --GRKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRM 492 (630)
T ss_pred --CCCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCC
Confidence 11223333332 2222 344444432 2567899999875 5677888888765 3588999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+++|
T Consensus 493 ~~~e 496 (630)
T TIGR00643 493 KSDE 496 (630)
T ss_pred CHHH
Confidence 8764
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.84 E-value=6e-20 Score=165.04 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=135.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|++||+|+||.|.+..++++.. + |+++...+|+.+... +.+ .+++|+|+|||++..++++ .......++++|
T Consensus 79 ~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~--~~l--~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvV 151 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDD--ERL--ARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVV 151 (766)
T ss_pred EEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccch--hhh--ccCCEEEEchHHhhHhhhc-CcchhhcccEEE
Confidence 79999999999999999996654 4 899999999987544 222 6799999999999999998 656889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCC---CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPK---LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~---~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.+.+...++.++.|..+++. ..|++++|||+++ ...++.+.-.++..-.+.+.+ ...
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~--------------l~~ 216 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVP--------------LRR 216 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcc--------------ccc
Confidence 9999988777677777777766653 4799999999996 466666543344422222221 223
Q ss_pred CccceEEEEEcCCCCc-------HHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 159 PLGLHLEYLECEPDEK-------PSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k-------~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
+......++......| ...+...+.. ..++++||||+|++.+...++.+..
T Consensus 217 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 217 GVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred CCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 3334445555554333 2333333333 3667999999999999999999984
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.82 E-value=1.4e-19 Score=157.80 Aligned_cols=206 Identities=12% Similarity=0.115 Sum_probs=127.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+.+.+++++.. +...+..+.+|... ..+++|+|+||+++.+... ..+++++++|
T Consensus 161 vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~~~i~~g~~~--------~~~~~I~VaT~qsl~~~~~----~~~~~~~~iI 227 (501)
T PHA02558 161 VLIIVPTTSLVTQMIDDFVDYRLF-PREAMHKIYSGTAK--------DTDAPIVVSTWQSAVKQPK----EWFDQFGMVI 227 (501)
T ss_pred EEEEECcHHHHHHHHHHHHHhccc-cccceeEEecCccc--------CCCCCEEEeeHHHHhhchh----hhccccCEEE
Confidence 799999999999999999998643 24455556666543 1457899999999865432 2468899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH--HhccCCCeEEEEeccC--cccccccch-----hc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS--KAGLRNPVRVEVRAES--KSHHVSASS-----QQ 152 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~--~~~~~~~~~i~~~~~~--~~~~~~~~~-----~~ 152 (230)
+||||++.+.. +..++..+++..++++||||+.+...... ..+++ |....+.... ..+.+.... ..
T Consensus 228 vDEaH~~~~~~----~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 228 VDECHLFTGKS----LTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred EEchhcccchh----HHHHHHhhhccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEecc
Confidence 99999997644 45677778778899999999875322111 11122 2221111110 000000000 00
Q ss_pred cccCCCC----ccceE-EEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 153 LASSKTP----LGLHL-EYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 153 ~~~~~~~----~~i~~-~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....... ...+. .....+...|...+..++.. ..+.+++|||++.++|+.++..|.+. |.++..+||+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~----g~~v~~i~G~~ 378 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV----YDKVYYVSGEV 378 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 0000000 00000 00111233455555555442 24578999999999999999999998 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+++|
T Consensus 379 ~~~e 382 (501)
T PHA02558 379 DTED 382 (501)
T ss_pred CHHH
Confidence 9764
No 66
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.79 E-value=1.5e-18 Score=130.49 Aligned_cols=120 Identities=33% Similarity=0.530 Sum_probs=102.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++|++|+.+.+.++.... ++++..+.++.....+......++++|+|+||+++.+++.. +...+.+++++|
T Consensus 47 ~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iV 124 (169)
T PF00270_consen 47 VLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIV 124 (169)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEE
T ss_pred EEEEeeccccccccccccccccccc-ccccccccccccccccccccccccccccccCcchhhccccc-cccccccceeec
Confidence 7999999999999999999998763 78999999988766444444367899999999999999987 555778899999
Q ss_pred EeccccccccccHHHHHHHHHhCC--CCCcEEEEeecCchHHHH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~ 123 (230)
+||+|.+.++++...+..+++.+. .+.|++++|||+++.++.
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHH
T ss_pred cCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhh
Confidence 999999998888889999988874 368999999999976654
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=8.7e-19 Score=151.45 Aligned_cols=200 Identities=18% Similarity=0.192 Sum_probs=140.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
..|||+|.-.|-+ ++...+... |+++..+++.-+.++... .+..+..++++-+||++..---. ..+.-..+
T Consensus 59 ~TLVVSPLiSLM~---DQV~~l~~~--Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i 132 (590)
T COG0514 59 LTLVVSPLISLMK---DQVDQLEAA--GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPI 132 (590)
T ss_pred CEEEECchHHHHH---HHHHHHHHc--CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCC
Confidence 3689999666654 455555444 789999888755544333 44456689999999997553111 22335778
Q ss_pred cEEEEeccccccccc--cHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccchh
Q 026925 78 EILVLDEADRLLDMG--FQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 78 ~~lVvDEad~l~~~~--~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 151 (230)
.+++|||||++..|| |++++.++..... ++..++++|||.++.+...+...+. .+..+....
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf------------ 200 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF------------ 200 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC------------
Confidence 899999999999998 9999988754432 2788999999999999887777655 444443322
Q ss_pred ccccCCCCccceEEEEEcC-CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECE-PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+|+...+.... ...+...+.. ......+..||||.|++.|++++..|... |+++..+||||+.+|
T Consensus 201 ------dRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----g~~a~~YHaGl~~~e 268 (590)
T COG0514 201 ------DRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN----GISAGAYHAGLSNEE 268 (590)
T ss_pred ------CCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC----CCceEEecCCCCHHH
Confidence 2345543333332 2233332222 12556678999999999999999999998 999999999998754
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.79 E-value=9.5e-18 Score=152.81 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=148.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC---cccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~---~~~~~~ 76 (230)
.||+|.||++||+.....++++...++ ++.+...+|+.+..+....+ .++|+||+|||.++..++-..+ .+.+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~-~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAII-RNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHH-hCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 379999999999999999999999986 58888888888766554444 7999999999999988554312 234788
Q ss_pred ccEEEEeccccccccccHHHHHHHHHh-------CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccc
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISR-------LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSAS 149 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~-------l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 149 (230)
+++||+||+| .....|+.++--++++ .+...|+|+.|||+.+. .++...++.......+..+
T Consensus 196 Lk~lVvDElH-tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~--------- 264 (851)
T COG1205 196 LKYLVVDELH-TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED--------- 264 (851)
T ss_pred CcEEEEecce-eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC---------
Confidence 9999999999 5665555554333333 34578999999999875 6666666665554433222
Q ss_pred hhccccCCCCccceEEEEEcC---------CCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCC---
Q 026925 150 SQQLASSKTPLGLHLEYLECE---------PDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKS--- 215 (230)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g--- 215 (230)
..+....+++..-+ ..++......+... ..+-++|+|+.+++.|+.++..........+
T Consensus 265 -------g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l 337 (851)
T COG1205 265 -------GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKL 337 (851)
T ss_pred -------CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhh
Confidence 35555565555555 23455555555443 3667999999999999999744333332235
Q ss_pred -ceEEeccCCCCCCC
Q 026925 216 -LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 -~~~~~lh~~~~~~e 229 (230)
..+...+|+|..+|
T Consensus 338 ~~~v~~~~~~~~~~e 352 (851)
T COG1205 338 LDAVSTYRAGLHREE 352 (851)
T ss_pred hhheeeccccCCHHH
Confidence 67888999987654
No 69
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=1.9e-18 Score=154.10 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=145.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC--cccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~--~~~~~~l~~ 79 (230)
+|+|+|+|+||.++.+.+.+-...+ |+++..++|+.+..+.. + ..++|||+|||+..-.-+... .-.++.+++
T Consensus 167 iVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L 241 (1230)
T KOG0952|consen 167 IVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRL 241 (1230)
T ss_pred EEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeeeeccchhhhhheee
Confidence 5899999999999888888777777 89999999998866544 3 458999999999655444311 123688999
Q ss_pred EEEeccccccccccHHHHHHHHHhC-------CCCCcEEEEeecCchHHHHHHHhccCCC--eEEEEeccCcccccccch
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNP--VRVEVRAESKSHHVSASS 150 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l-------~~~~q~i~~SAt~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 150 (230)
+|+||+|. +....++.++.|+.+. ....+++++|||+|+. + -...|++-+ .-+..-+.
T Consensus 242 viIDEVHl-Lhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-e-DvA~fL~vn~~~glfsFd~---------- 308 (1230)
T KOG0952|consen 242 VIIDEVHL-LHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-E-DVARFLRVNPYAGLFSFDQ---------- 308 (1230)
T ss_pred EEeeeehh-hcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-H-HHHHHhcCCCccceeeecc----------
Confidence 99999995 4555677777776554 3467899999999974 3 334455532 23333334
Q ss_pred hccccCCCCccceEEEEEcCCCCcHHHHH---------HHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEe
Q 026925 151 QQLASSKTPLGLHLEYLECEPDEKPSQLV---------DLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIP 220 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~---------~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~ 220 (230)
...|-.+.+.++.++.. |...-. +.++ -..+++++|||.++..+.+.|+.|.+.....|....+
T Consensus 309 -----~yRPvpL~~~~iG~k~~-~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f 382 (1230)
T KOG0952|consen 309 -----RYRPVPLTQGFIGIKGK-KNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLF 382 (1230)
T ss_pred -----cccccceeeeEEeeecc-cchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCccccc
Confidence 57888899999998876 221111 1112 1367899999999999999999999997777888777
Q ss_pred ccCC
Q 026925 221 LHGK 224 (230)
Q Consensus 221 lh~~ 224 (230)
+|+.
T Consensus 383 ~~~~ 386 (1230)
T KOG0952|consen 383 LPSP 386 (1230)
T ss_pred CCCh
Confidence 7765
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.9e-17 Score=145.61 Aligned_cols=204 Identities=17% Similarity=0.142 Sum_probs=146.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC---------
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD--------- 70 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~--------- 70 (230)
+++|++||++||.|.+.++.++...+ +++++.+.|+.+.. .... ..++||++||...+ -++++.+-
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~ 221 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDA 221 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccccccccccccch
Confidence 47999999999999999999999887 89999999997653 2333 36799999999987 44454310
Q ss_pred ---------------cccCCcccEEEEecccccc-ccc-----------------cHHHHHHHHHhCCC-----------
Q 026925 71 ---------------VLDFRNLEILVLDEADRLL-DMG-----------------FQKQISYIISRLPK----------- 106 (230)
Q Consensus 71 ---------------~~~~~~l~~lVvDEad~l~-~~~-----------------~~~~~~~i~~~l~~----------- 106 (230)
..-.+.+.+.||||+|.++ |.. .......+...+..
T Consensus 222 ~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~ 301 (656)
T PRK12898 222 RLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEK 301 (656)
T ss_pred hhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCC
Confidence 0113668899999999886 311 00001111110000
Q ss_pred ---------------------------------------------C----------------------------------
Q 026925 107 ---------------------------------------------L---------------------------------- 107 (230)
Q Consensus 107 ---------------------------------------------~---------------------------------- 107 (230)
+
T Consensus 302 ~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQai 381 (656)
T PRK12898 302 RIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMI 381 (656)
T ss_pred eEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHH
Confidence 0
Q ss_pred ---------------------------CcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 108 ---------------------------RRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 108 ---------------------------~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
..+.+||||.+....++...|.-++..|-.... ...
T Consensus 382 eaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp-----------------~~r 444 (656)
T PRK12898 382 EAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP-----------------SQR 444 (656)
T ss_pred HHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC-----------------ccc
Confidence 135699999998888888888777665543222 122
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.+...+|+..+.++++.. .++++||||+|++.++.++..|.+. |+++.++||+++++|
T Consensus 445 ~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~----gi~~~~Lhg~~~~rE 511 (656)
T PRK12898 445 RHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA----GLPHQVLNAKQDAEE 511 (656)
T ss_pred eecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----CCCEEEeeCCcHHHH
Confidence 2344556667788999999999764 3578999999999999999999988 999999999876543
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.8e-16 Score=142.13 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=69.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|.|++||++||.|.+.++.++...+ +++++.+.|+.+..++.+.. .++||++|||+++ .++++.. ....+
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~ 197 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQ 197 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcc
Confidence 47899999999999999999999988 99999999998733333332 5699999999998 4555431 11346
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.++|+||||.|+
T Consensus 198 r~~~~~IvDEaDsiL 212 (790)
T PRK09200 198 RPLNYAIIDEIDSIL 212 (790)
T ss_pred cccceEEEeccccce
Confidence 889999999999996
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.72 E-value=6.5e-16 Score=141.75 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+...++++... ++.++..++|+.+..+....+ .+++|+|+||+.+...+.. +.+.+.+++++|
T Consensus 61 vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~r~~~~--~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liV 136 (773)
T PRK13766 61 VLILAPTKPLVEQHAEFFRKFLNI-PEEKIVVFTGEVSPEKRAELW--EKAKVIVATPQVIENDLIA-GRISLEDVSLLI 136 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhCC-CCceEEEEeCCCCHHHHHHHH--hCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 799999999999999999988643 245788888887765443333 5689999999999887766 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++........+...........+++++|||..
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~ 173 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPG 173 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence 9999998754323333333333345677999999974
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.72 E-value=3.1e-16 Score=139.64 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----Ccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~ 72 (230)
++|++||++||.|...++..+...+ ++++....++.. ...+.... ..++||++|||+++ .++++.. ...
T Consensus 114 V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~ 191 (762)
T TIGR03714 114 AMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGK 191 (762)
T ss_pred eEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhc
Confidence 6899999999999999999999888 899888776522 11222232 36799999999999 4555431 234
Q ss_pred cCCcccEEEEecccccc
Q 026925 73 DFRNLEILVLDEADRLL 89 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~ 89 (230)
.++++.++|+||||.|+
T Consensus 192 ~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 192 FLRPFNYVIVDEVDSVL 208 (762)
T ss_pred ccccCcEEEEecHhhHh
Confidence 47889999999999995
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.71 E-value=4.9e-16 Score=144.76 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=121.5
Q ss_pred ChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc-
Q 026925 8 TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD- 86 (230)
Q Consensus 8 t~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad- 86 (230)
+++||.|+..++..-.+...|..+ .. ..+. ..+++|+|+||++|++.+.. .. .+++++++||||||
T Consensus 131 ArsLA~RVA~El~~~lG~~VGY~v----rf---~~~~----s~~t~I~v~TpG~LL~~l~~-d~-~Ls~~~~IIIDEAHE 197 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCVGYKV----RF---NDQV----SDNTMVKLMTDGILLAEIQQ-DR-LLMQYDTIIIDEAHE 197 (1294)
T ss_pred HHHHHHHHHHHHhhhhcceeceee----cC---cccc----CCCCCEEEEChHHHHHHHhc-CC-ccccCcEEEecCccc
Confidence 579999998888753222113221 11 1111 35689999999999999876 43 48999999999999
Q ss_pred cccccccHH-HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEE
Q 026925 87 RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLE 165 (230)
Q Consensus 87 ~l~~~~~~~-~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (230)
++++.+|.. .+..++... ++.|++++|||++. ..+.+.|...| .+.+... . ..+.++
T Consensus 198 RsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr----------------~--~pVei~ 255 (1294)
T PRK11131 198 RSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGR----------------T--YPVEVR 255 (1294)
T ss_pred cccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCc----------------c--ccceEE
Confidence 688877654 344444332 46799999999975 46666555555 3444332 1 124455
Q ss_pred EEEcCCCC---cHHHHHHHH---H---hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc---eEEeccCCCCCCC
Q 026925 166 YLECEPDE---KPSQLVDLL---I---KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL---SLIPLHGKMKQVG 229 (230)
Q Consensus 166 ~~~~~~~~---k~~~l~~ll---~---~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~---~~~~lh~~~~~~e 229 (230)
+......+ +.+.+..++ . ..+.+.+||||+++++++.++..|.+. ++ .+.++||+|+++|
T Consensus 256 y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~----~~~~~~VlpLhg~Ls~~e 327 (1294)
T PRK11131 256 YRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL----NLRHTEILPLYARLSNSE 327 (1294)
T ss_pred EeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc----CCCcceEeecccCCCHHH
Confidence 55543322 233333332 2 345678999999999999999999886 55 4778999999754
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.70 E-value=3.7e-16 Score=142.29 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=145.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc--CCcEEEEcChHHHHHHhhC-CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYDIMERM-DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~--~~~Iiv~TP~~l~~~l~~~-~~~~~ 74 (230)
+.|||.|-..| +.++...+... ++....+.++-...++.. .+.++ ..+|+.-|||++...-... ....+
T Consensus 306 itvVISPL~SL---m~DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 306 VTVVISPLISL---MQDQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred ceEEeccHHHH---HHHHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 35899995555 56677777443 788888888766653333 33344 6899999999976532210 22234
Q ss_pred Cc---ccEEEEeccccccccc--cHHHHHHHHHhC--CCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccc
Q 026925 75 RN---LEILVLDEADRLLDMG--FQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHH 145 (230)
Q Consensus 75 ~~---l~~lVvDEad~l~~~~--~~~~~~~i~~~l--~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 145 (230)
.. +..+||||||++..|| |+++++++.... ...+.++++|||.+..++.-....++ ++..+. .
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~------ 452 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK--S------ 452 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec--c------
Confidence 44 8999999999999998 999988864332 23478999999999999887777655 555332 2
Q ss_pred cccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 146 VSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+.|+...+..-........+...++ .+..+.+||||.++++|+.++..|+.. |.++..+|+|
T Consensus 453 ----------sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~----~~~a~~YHAG 518 (941)
T KOG0351|consen 453 ----------SFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL----GKSAAFYHAG 518 (941)
T ss_pred ----------cCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----chhhHhhhcC
Confidence 2345666665555443444444445554 457789999999999999999999999 9999999999
Q ss_pred CCCCC
Q 026925 225 MKQVG 229 (230)
Q Consensus 225 ~~~~e 229 (230)
|+.++
T Consensus 519 l~~~~ 523 (941)
T KOG0351|consen 519 LPPKE 523 (941)
T ss_pred CCHHH
Confidence 99764
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=8.8e-16 Score=136.12 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC------ccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~------~~~ 73 (230)
.+.|++||++||.|.+.++.++...+ ++++..+.|+.+..++...+ .+||++|||++| .++++. + ...
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd-~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRD-NMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhc-ccccchhhhh
Confidence 37899999999999999999999888 89999999998765544433 489999999999 888876 3 346
Q ss_pred CCcccEEEEecccccc
Q 026925 74 FRNLEILVLDEADRLL 89 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~ 89 (230)
++++.++||||+|.++
T Consensus 174 ~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 174 QRPFHFAIIDEVDSIL 189 (745)
T ss_pred ccccceeEeecHHHHh
Confidence 7999999999999996
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.2e-15 Score=137.11 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=72.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccC-----C
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF-----R 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~-----~ 75 (230)
+.|++||++||.|.+.++..+...+ ++++..+.|+.+..++...+ .+||++|||++| .++++.+-.+++ +
T Consensus 126 V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r 201 (896)
T PRK13104 126 VHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQR 201 (896)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhcc
Confidence 7899999999999999999999888 89999999998776655444 589999999999 888887324444 6
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.++||||||.|+
T Consensus 202 ~l~~~IvDEaDsiL 215 (896)
T PRK13104 202 ELNFAIVDEVDSIL 215 (896)
T ss_pred ccceEEeccHhhhh
Confidence 89999999999997
No 78
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.68 E-value=5.2e-15 Score=123.96 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=96.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++||+-|+.|....|+++++- |.-.++.++|....++....+. +.+|+|+||+.+..-+.. +.+++.++.++|
T Consensus 61 vlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ltGev~p~~R~~~w~--~~kVfvaTPQvveNDl~~-Grid~~dv~~li 136 (542)
T COG1111 61 VLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAALTGEVRPEEREELWA--KKKVFVATPQVVENDLKA-GRIDLDDVSLLI 136 (542)
T ss_pred EEEecCCchHHHHHHHHHHHHhCC-ChhheeeecCCCChHHHHHHHh--hCCEEEeccHHHHhHHhc-CccChHHceEEE
Confidence 789999999999999999999853 4568889999999988888874 467999999999988888 999999999999
Q ss_pred Eeccccccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 82 LDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 82 vDEad~l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
+||||+-...- |....+..++ ...++.++++|||...+.+...+
T Consensus 137 fDEAHRAvGnyAYv~Va~~y~~-~~k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 137 FDEAHRAVGNYAYVFVAKEYLR-SAKNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred echhhhccCcchHHHHHHHHHH-hccCceEEEEecCCCCCHHHHHH
Confidence 99999976542 4443343333 33577899999998766555444
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=2.7e-15 Score=136.78 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=152.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
||.|||||--||+|.++.++.-..++ ++++..+..=.+..++.. .+.+++.||+|||.. ++. +.+.++++
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~--kdv~FkdL 717 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS--KDVKFKDL 717 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC--CCcEEecC
Confidence 68999999999999999999988888 699988876555544444 455688999999984 333 67889999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
.++||||=|++ +-.-+.-++.+..+.-++-+|||.-|....+....+++-..|...+.
T Consensus 718 GLlIIDEEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~----------------- 775 (1139)
T COG1197 718 GLLIIDEEQRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE----------------- 775 (1139)
T ss_pred CeEEEechhhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC-----------------
Confidence 99999999985 44444556677789999999999988899999999999998877666
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..-.++.++..-++.--.+.+++-+ ..++++..-+|.+++.++++..|++. -+..++++.||.|+.+|
T Consensus 776 ~R~pV~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~L--VPEarI~vaHGQM~e~e 843 (1139)
T COG1197 776 DRLPVKTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVESIEKKAERLREL--VPEARIAVAHGQMRERE 843 (1139)
T ss_pred CCcceEEEEecCChHHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHh--CCceEEEEeecCCCHHH
Confidence 2333444444433332223333222 25678999999999999999999999 78999999999999765
No 80
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.2e-14 Score=130.44 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=71.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCc-----ccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-----LDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~-----~~~~ 75 (230)
+-|++||..||.|.+.++..+...+ +++++.+.|+.+..++...+ .+||++|||++| .++++..-. ...+
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r 200 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQR 200 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhccc
Confidence 5689999999999999999999888 99999999998877665554 489999999999 888876221 2368
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||||.|+
T Consensus 201 ~~~~aIvDEaDsiL 214 (830)
T PRK12904 201 GLNYAIVDEVDSIL 214 (830)
T ss_pred ccceEEEechhhhe
Confidence 89999999999986
No 81
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=5.1e-15 Score=134.39 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=130.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+++++|+++||+.+-..+.+-...+ +++|...+|+.....+. -.+.+|||||||+..-.-++++.. ..+-++.+
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHH
Confidence 5799999999999888877777777 99999999987644332 256789999999954444432211 24567899
Q ss_pred EEeccccccccccHHHHHHHHHhCC-------CCCcEEEEeecCchHHHHHHHhccC-CC-eEEEEeccCcccccccchh
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLR-NP-VRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-------~~~q~i~~SAt~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~ 151 (230)
|+||+|. +....++.++.|..+.. ..++.+++|||+|+. .-...|++ ++ ...... .
T Consensus 442 IIDEIHL-LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd-~----------- 506 (1674)
T KOG0951|consen 442 IIDEIHL-LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFD-S----------- 506 (1674)
T ss_pred hhhhhhh-cccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccC-c-----------
Confidence 9999995 44445777777765442 357899999999975 22333333 22 233332 2
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHH--------HHHHHHhCCCCeEEEEcCchhHHHHHHHHhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQ--------LVDLLIKNKSKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~--------l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
..+|..+.|.++.+.+.+.... +.+.++..+..++|||+-+++++-+.|++++
T Consensus 507 ----syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 507 ----SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred ----ccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHH
Confidence 4788999999999987654432 3345555566899999999999999999887
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=6e-13 Score=115.95 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=77.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+|+.|+.+.+++.. +.++..++|+.+..+... .+.++.++|+|||+..+. ..++++
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf--------~p~~~l 94 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF--------LPFKNL 94 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc--------CcccCC
Confidence 48999999999999999988753 557788888776554433 344567899999998652 246789
Q ss_pred cEEEEeccccccccc-----c-HHHHHHHHHhCCCCCcEEEEeecCchHHHH
Q 026925 78 EILVLDEADRLLDMG-----F-QKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 78 ~~lVvDEad~l~~~~-----~-~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~ 123 (230)
+++||||.|...-++ | ..++-..... ..+.+++++|||.+.+...
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYH 145 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHH
Confidence 999999999876332 1 1222222233 3578999999996644333
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=2.8e-13 Score=123.67 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=122.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHHH--------------------HHHh---c---CCcE
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADVK--------------------KIEE---E---GANL 54 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~--------------------~l~~---~---~~~I 54 (230)
+++..||+++++|++..++++... +++..+..++|......... .... + -.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 578899999999999999876543 22456777776543211110 1111 1 1689
Q ss_pred EEEcChHHHHHHhhCCcccCCcc----cEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHH-HHhc
Q 026925 55 LIGTPGRLYDIMERMDVLDFRNL----EILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEEL-SKAG 128 (230)
Q Consensus 55 iv~TP~~l~~~l~~~~~~~~~~l----~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~-~~~~ 128 (230)
+|||+.+++..+-..+...++.+ +.+||||+|.. +.-....+..+++.+. ....+|++|||+|...+.. .+.|
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 99999998755433133333333 48999999976 4333445555665543 3567999999999877654 3333
Q ss_pred cCC-Ce-------EEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCc-HHHHHHHHHh-CCCCeEEEEcCchh
Q 026925 129 LRN-PV-------RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEK-PSQLVDLLIK-NKSKKIIIYFMTCA 198 (230)
Q Consensus 129 ~~~-~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~ll~~-~~~~~~lIF~~t~~ 198 (230)
-.. +. .++................ .....+..+.-.......... ...+..+++. ..+++++|||||++
T Consensus 493 ~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~ 571 (878)
T PRK09694 493 GGHDPVELSSAYPLITWRGVNGAQRFDLSAHP-EQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVD 571 (878)
T ss_pred ccccccccccccccccccccccceeeeccccc-cccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 111 10 0000000000000000000 000000111100111111122 2333334432 35679999999999
Q ss_pred HHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 199 CVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 199 ~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.|+++++.|++.. ..+.++..+||.+++.
T Consensus 572 ~Aq~ly~~L~~~~-~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 572 DAQKLYQRLKELN-NTQVDIDLFHARFTLN 600 (878)
T ss_pred HHHHHHHHHHhhC-CCCceEEEEeCCCCHH
Confidence 9999999999762 1136899999998764
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=4.2e-13 Score=116.71 Aligned_cols=195 Identities=16% Similarity=0.269 Sum_probs=135.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|+..++||--||+|.+..+.++...+ ++++..++|..... +..+.+.++..||+|||.+- +. ....++++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ--d~V~F~~L 385 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ--DKVEFHNL 385 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh--cceeecce
Confidence 67899999999999999999999988 89999999876543 44456666779999999974 33 45778999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (230)
.++|+||-|++ +-.=+..+..-.. ....+.||||.-+ +.++...+.+-..=.+ ++. +
T Consensus 386 gLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIP--RTLAlt~fgDldvS~I-dEl--------------P 443 (677)
T COG1200 386 GLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIP--RTLALTAFGDLDVSII-DEL--------------P 443 (677)
T ss_pred eEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCch--HHHHHHHhccccchhh-ccC--------------C
Confidence 99999999985 4433444444445 6788999999766 4555555554332111 220 1
Q ss_pred CCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 157 KTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 157 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.-...|+.+++.. ++...+.+.+++ .+++++-+-|+-. +.|+.++..|+.. .+++++..+||.|+
T Consensus 444 ~GRkpI~T~~i~~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~--~~~~~vgL~HGrm~ 518 (677)
T COG1200 444 PGRKPITTVVIPH---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF--LPELKVGLVHGRMK 518 (677)
T ss_pred CCCCceEEEEecc---ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH--cccceeEEEecCCC
Confidence 1223345444443 333333333332 2677899999853 4678888999865 67889999999999
Q ss_pred CCC
Q 026925 227 QVG 229 (230)
Q Consensus 227 ~~e 229 (230)
.+|
T Consensus 519 ~~e 521 (677)
T COG1200 519 PAE 521 (677)
T ss_pred hHH
Confidence 765
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.56 E-value=6.6e-13 Score=119.58 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=80.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++|||+||++|+.|+.+.+++.. +.++..++|+.+..+... .+..+.++|+||||..+. ..++++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l 259 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNL 259 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCC
Confidence 47999999999999999888753 568888999877654443 334567899999997642 346889
Q ss_pred cEEEEecccccccccc---HHHHHH--HHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 78 EILVLDEADRLLDMGF---QKQISY--IISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~---~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
+++|+||+|...-++. ..+.+. +......+.+++++|||.+.+.....
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 9999999997653321 111122 23334468899999999775544444
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.53 E-value=8.3e-13 Score=123.82 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=106.9
Q ss_pred hcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc-cccccccHHH-HHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD-RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad-~l~~~~~~~~-~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
+.+..|.++||+.|++.+.. . -.+++++++|||||| ++++.++.-. ++.++... +..|++++|||++. ..+.+
T Consensus 154 s~~T~I~~~TdGiLLr~l~~-d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~ 228 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQ-D-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSR 228 (1283)
T ss_pred CCCceeeeccccHHHHHhhh-C-cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHH
Confidence 45678999999999998876 3 348999999999999 6888776653 56666554 47899999999974 56666
Q ss_pred hccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCC------CCcHHHHHHHHH---hCCCCeEEEEcCch
Q 026925 127 AGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEP------DEKPSQLVDLLI---KNKSKKIIIYFMTC 197 (230)
Q Consensus 127 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~---~~~~~~~lIF~~t~ 197 (230)
.|...|. +.+... .. .+..+|..... .++...+...+. ....+.+|||++++
T Consensus 229 ~F~~apv-I~V~Gr----------------~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 229 HFNNAPI-IEVSGR----------------TY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred HhcCCCE-EEECCC----------------cc--cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 5544443 444322 11 12333333321 123344444333 23557899999999
Q ss_pred hHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 198 ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 198 ~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++++.++..|.+.. .++..+.++||+|+++|
T Consensus 290 ~EI~~l~~~L~~~~-~~~~~VlpLhg~Ls~~e 320 (1283)
T TIGR01967 290 REIRDAAEILRKRN-LRHTEILPLYARLSNKE 320 (1283)
T ss_pred HHHHHHHHHHHhcC-CCCcEEEeccCCCCHHH
Confidence 99999999998762 23457899999999754
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.52 E-value=3.5e-14 Score=116.77 Aligned_cols=198 Identities=18% Similarity=0.132 Sum_probs=134.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hhc--CCcEEEEcChHHHH-----HHhhCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEE--GANLLIGTPGRLYD-----IMERMD 70 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~--~~~Iiv~TP~~l~~-----~l~~~~ 70 (230)
+.+|+.|.-+|....-+++.+| .+++..+++.-+..+..+.+ ... ...++.-|||.... ++. +
T Consensus 63 ITIV~SPLiALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn--~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN--G 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH--H
Confidence 3589999888887777777766 57777777776655444433 223 35789999998432 221 2
Q ss_pred cccCCcccEEEEeccccccccc--cHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHh--ccCCCeEEEEeccCccc
Q 026925 71 VLDFRNLEILVLDEADRLLDMG--FQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKA--GLRNPVRVEVRAESKSH 144 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 144 (230)
...-.-+.++||||||++..|| |++++.++-.... .....++++||.++.+.+-.-. -+++|+.+.-.+.
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~---- 211 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT---- 211 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc----
Confidence 2234667899999999999998 8999888744332 4678899999999998885544 4568886643222
Q ss_pred ccccchhccccCCCCccceEEEEEcCCC----CcH----HHHHHHHHhC---------CCCeEEEEcCchhHHHHHHHHh
Q 026925 145 HVSASSQQLASSKTPLGLHLEYLECEPD----EKP----SQLVDLLIKN---------KSKKIIIYFMTCACVDYWGVVL 207 (230)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~k~----~~l~~ll~~~---------~~~~~lIF~~t~~~~~~l~~~L 207 (230)
-..+.|+.+.-. +-. +.-..-|.++ -.+-.||||.|++.||+++-.|
T Consensus 212 ----------------FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 212 ----------------FRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred ----------------hhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 223333332211 112 2222222211 2246799999999999999999
Q ss_pred hhhhccCCceEEeccCCCCCCC
Q 026925 208 PRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 208 ~~~~~~~g~~~~~lh~~~~~~e 229 (230)
... |+++..+|.|+...|
T Consensus 276 ~~~----Gi~A~AYHAGLK~~E 293 (641)
T KOG0352|consen 276 EIA----GIPAMAYHAGLKKKE 293 (641)
T ss_pred hhc----CcchHHHhcccccch
Confidence 988 999999999998765
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=110.44 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=146.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHH--hcCCcEEEEcChHHHHH---Hhh-CCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIE--EEGANLLIGTPGRLYDI---MER-MDV 71 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~--~~~~~Iiv~TP~~l~~~---l~~-~~~ 71 (230)
++||++|.-.|.....-+++++ ++....+...+++++... .+. .+...+|..||+++... +.. .+.
T Consensus 136 ~alvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 5799999777776655555555 677777877777653322 221 24578999999998652 221 245
Q ss_pred ccCCcccEEEEeccccccccc--cHHHHHH--HHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccc
Q 026925 72 LDFRNLEILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVS 147 (230)
Q Consensus 72 ~~~~~l~~lVvDEad~l~~~~--~~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 147 (230)
+....+..+-+||+|+-..|| |++++.. |+++..+...+++++||.+.++..-++..+.-....++...
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~------- 283 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG------- 283 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-------
Confidence 667888999999999999997 7887765 45666678889999999999988877776553333333333
Q ss_pred cchhccccCCCCccceEEEEEcCC--CCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 148 ASSQQLASSKTPLGLHLEYLECEP--DEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+++...+..-+. ++-++-+..+++ ...++..||||-++++|+.++..|++. |+.+..+|..
T Consensus 284 ---------fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~----gi~a~~yha~ 350 (695)
T KOG0353|consen 284 ---------FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH----GIHAGAYHAN 350 (695)
T ss_pred ---------cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc----Cccccccccc
Confidence 234555554444332 234455666665 447889999999999999999999999 9999999999
Q ss_pred CCCCC
Q 026925 225 MKQVG 229 (230)
Q Consensus 225 ~~~~e 229 (230)
|.++.
T Consensus 351 lep~d 355 (695)
T KOG0353|consen 351 LEPED 355 (695)
T ss_pred cCccc
Confidence 98764
No 89
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=1e-12 Score=100.41 Aligned_cols=135 Identities=37% Similarity=0.592 Sum_probs=107.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||+.++.|+.+.+..+.... ........++....+....+..+..+++++||+.+...+.. ......+++++|
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iI 134 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVI 134 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEE
Confidence 6899999999999999999887553 22334444554444555555333349999999999999887 556788899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
+||+|.+....+...+..++..++...+++++|||.++........++.+...+...
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999987678888899998888889999999999999999999888866665543
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.46 E-value=2.5e-12 Score=117.48 Aligned_cols=116 Identities=26% Similarity=0.252 Sum_probs=98.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++.+|.|+|.+|.+..+....... .-.+++++|+.+. +..+.++|+|-|-|..|+.. +...+..+..+|
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee--------CCCCceEEeeHHHHHHHhcc-CcccccccceEE
Confidence 5789999999999998887765432 1245777887665 67788999999999999998 888899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~ 128 (230)
+||+|.|-+...+..++.++-.+|...+++++|||+++. .++..+.
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi 280 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWI 280 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHH
Confidence 999999999888999999999999999999999999975 5555554
No 91
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=5.6e-13 Score=118.96 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=115.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------CcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~~ 74 (230)
+|||||+.+|+.|+.+.+.+++.. +...+..+.|+... .. ....+|+|+|++.+.....++ ..+.-
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~l-~~~~I~~~tg~~k~-----~~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWSTI-DDSQICRFTSDAKE-----RF-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCC-CCceEEEEecCccc-----cc-ccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 689999999999999999998633 24566666664321 11 234789999998765322110 11223
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH--HHHHHHhccCCCeEEEEec--cCcccccccch
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA--ESKSHHVSASS 150 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~ 150 (230)
..++++|+||+|++.+.. +..++..+. ....+++|||...+ ....+..++ .|......- -...+.+..-.
T Consensus 374 ~~~gLII~DEvH~lpA~~----fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~ 447 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAM----FRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQ 447 (732)
T ss_pred ccCCEEEEEccccccHHH----HHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccce
Confidence 567899999999985544 444565564 44568999997522 111122222 222211111 00001110000
Q ss_pred ----------hccccCCCC-ccceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCce
Q 026925 151 ----------QQLASSKTP-LGLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS 217 (230)
Q Consensus 151 ----------~~~~~~~~~-~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~ 217 (230)
..+.+.... ..... ........|...+..+++.+ .++++||||++...++.++..| +
T Consensus 448 ~~ev~v~~t~~~~~~yl~~~~~~k~-~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------~-- 517 (732)
T TIGR00603 448 CAEVWCPMTPEFYREYLRENSRKRM-LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------G-- 517 (732)
T ss_pred EEEEEecCCHHHHHHHHHhcchhhh-HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-------C--
Confidence 000000000 00000 11112345777777788755 6789999999999988888876 2
Q ss_pred EEeccCCCCCCC
Q 026925 218 LIPLHGKMKQVG 229 (230)
Q Consensus 218 ~~~lh~~~~~~e 229 (230)
+..+||++++.|
T Consensus 518 ~~~I~G~ts~~E 529 (732)
T TIGR00603 518 KPFIYGPTSQQE 529 (732)
T ss_pred CceEECCCCHHH
Confidence 245899998754
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=1.2e-12 Score=116.60 Aligned_cols=113 Identities=25% Similarity=0.241 Sum_probs=94.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++=+|-++|.+|-++.++...+. +..++|+.+. +..+..+|+|-|-|..|+.+ +.--.+++..+|
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF~D-----vgLlTGDvqi--------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VI 408 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETFGD-----VGLLTGDVQI--------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVI 408 (1248)
T ss_pred eEecchhhhhccchHHHHHHhccc-----cceeecceee--------CCCcceEeehHHHHHHHHhc-ccchhhccceEE
Confidence 577889999999988888776433 2378887654 45578999999999999998 777789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~ 129 (230)
+||+|.+.+...+..++.++=++|++.++|++|||.|+. .+++.+..
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~-~EFA~WIG 455 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT-LEFADWIG 455 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCCh-HHHHHHhh
Confidence 999999999988888999999999999999999999975 66666543
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1.5e-12 Score=117.19 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=70.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccC-----C
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF-----R 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~-----~ 75 (230)
|.|++||.+||.|...++..+...+ |+++.++.++.+..+... .-+|||++|||..| .++++.+-.+.. +
T Consensus 126 VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r~~---~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr 201 (908)
T PRK13107 126 VHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEKKA---AYNADITYGTNNEFGFDYLRDNMAFSPQERVQR 201 (908)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHHHh---cCCCCeEEeCCCcccchhhhccCccchhhhhcc
Confidence 6899999999999999999999988 999999988877543322 23699999999999 888876213333 7
Q ss_pred cccEEEEeccccccc
Q 026925 76 NLEILVLDEADRLLD 90 (230)
Q Consensus 76 ~l~~lVvDEad~l~~ 90 (230)
.+.+.||||+|.++-
T Consensus 202 ~~~~aIvDEvDsiLi 216 (908)
T PRK13107 202 PLHYALIDEVDSILI 216 (908)
T ss_pred ccceeeecchhhhcc
Confidence 889999999999973
No 94
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.43 E-value=1.6e-11 Score=103.73 Aligned_cols=216 Identities=17% Similarity=0.212 Sum_probs=147.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCc----eEEEEEc--------------CcchHHHHHHHHhc-------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVG--------------GVEVKADVKKIEEE------------- 50 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~----~v~~~~~--------------~~~~~~~~~~l~~~------------- 50 (230)
+|||+|+|.-|.++-+.+.+++.....+ +...-.| ...++++...+..+
T Consensus 40 VLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGik~t 119 (442)
T PF06862_consen 40 VLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGIKFT 119 (442)
T ss_pred EEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeEEEe
Confidence 7999999999999998888886541000 0000001 11222333333221
Q ss_pred -----------CCcEEEEcChHHHHHHhh----CCccc-CCcccEEEEecccccc--ccccHHHHHHHHHhCCCC-----
Q 026925 51 -----------GANLLIGTPGRLYDIMER----MDVLD-FRNLEILVLDEADRLL--DMGFQKQISYIISRLPKL----- 107 (230)
Q Consensus 51 -----------~~~Iiv~TP~~l~~~l~~----~~~~~-~~~l~~lVvDEad~l~--~~~~~~~~~~i~~~l~~~----- 107 (230)
++||||++|--|...+.. ....+ ++++.++|+|.||.|+ +|.+...+...+...|.+
T Consensus 120 rk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~D 199 (442)
T PF06862_consen 120 RKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTD 199 (442)
T ss_pred cCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCC
Confidence 389999999999888873 12233 8999999999999887 455555555555555532
Q ss_pred ----------------CcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEcC
Q 026925 108 ----------------RRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECE 170 (230)
Q Consensus 108 ----------------~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (230)
+|++++|+..++++..+.+..+.|.. .+.+...... ...-......+.|.|...+
T Consensus 200 fsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 200 FSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------SGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred HHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--------ceeeeccccCCceEEEEec
Confidence 69999999999999999999777654 4554444211 0001345567788888765
Q ss_pred CCC-------cH----HHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDE-------KP----SQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~-------k~----~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+ +. ..++.-+. ......+|||++|.-+--++.++|.+. ++.+..+|...++++
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----~~sF~~i~EYts~~~ 338 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----NISFVQISEYTSNSD 338 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----CCeEEEecccCCHHH
Confidence 432 22 33445555 567789999999999999999999987 999999999887764
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=1.8e-12 Score=111.52 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=114.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||||||++|+.|+.+.+.+.... +-.++.+.|+.... .+..|.|+|-+.+...-.. ..+...+..++|
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~--------~~~~i~vat~qtl~~~~~l-~~~~~~~~~liI 151 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKEL--------EPAKVTVATVQTLARRQLL-DEFLGNEFGLII 151 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceecc--------CCCcEEEEEhHHHhhhhhh-hhhcccccCEEE
Confidence 699999999999998766666422 12344444443221 1146999999998774211 234445789999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH--------------------HHHHH-hccCCCeEEEEecc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV--------------------EELSK-AGLRNPVRVEVRAE 140 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~--------------------~~~~~-~~~~~~~~i~~~~~ 140 (230)
+||+|++.+..|......+.... .++++|||.+..- ..+.. .++..+..+.+...
T Consensus 152 ~DE~Hh~~a~~~~~~~~~~~~~~----~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~ 227 (442)
T COG1061 152 FDEVHHLPAPSYRRILELLSAAY----PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT 227 (442)
T ss_pred EEccccCCcHHHHHHHHhhhccc----ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec
Confidence 99999998776665433333222 2899999965221 11111 11112211111111
Q ss_pred CcccccccchhccccCCCCcc-----------ceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhh
Q 026925 141 SKSHHVSASSQQLASSKTPLG-----------LHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
............ ...... -...........+...+..++..+ ...+++|||.++.+++.++..|.
T Consensus 228 ~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~ 304 (442)
T COG1061 228 LTEDEEREYAKE---SARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFL 304 (442)
T ss_pred cchHHHHHhhhh---hhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhc
Confidence 000000000000 000000 000011111233445555566555 57799999999999999999999
Q ss_pred hhhccCCceEEeccCCCCCCC
Q 026925 209 RLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 209 ~~~~~~g~~~~~lh~~~~~~e 229 (230)
.. |. +..+.|+.+++|
T Consensus 305 ~~----~~-~~~it~~t~~~e 320 (442)
T COG1061 305 AP----GI-VEAITGETPKEE 320 (442)
T ss_pred CC----Cc-eEEEECCCCHHH
Confidence 87 67 888999888764
No 96
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.34 E-value=2e-11 Score=109.95 Aligned_cols=193 Identities=21% Similarity=0.243 Sum_probs=126.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEE-EEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVL-LVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~-~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++||+||..|+.|+++.+++++.......+.. .++..+. ++....+.++..||+|+|.+-+..-.+. +.-.++
T Consensus 128 ~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kF 204 (1187)
T COG1110 128 VYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKF 204 (1187)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCC
Confidence 68999999999999999999987552133333 4444333 3444566677899999999877766654 222468
Q ss_pred cEEEEeccccccccc-----------cHHH-H------HHHHHhC------------------------CCCCcEEEEee
Q 026925 78 EILVLDEADRLLDMG-----------FQKQ-I------SYIISRL------------------------PKLRRTGLFSA 115 (230)
Q Consensus 78 ~~lVvDEad~l~~~~-----------~~~~-~------~~i~~~l------------------------~~~~q~i~~SA 115 (230)
+++.+|++|.++..+ |-+. + ..+...+ .+..+++..||
T Consensus 205 dfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSA 284 (1187)
T COG1110 205 DFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSA 284 (1187)
T ss_pred CEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeec
Confidence 899999999998643 2111 0 1111111 12357899999
Q ss_pred cCchHH--HHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEE
Q 026925 116 TQTEAV--EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIY 193 (230)
Q Consensus 116 t~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 193 (230)
|..+.- ..+.+..++ ..++.. .....|+...+... +-...+..++++.+. =.|||
T Consensus 285 Tg~~rg~R~~LfReLlg----FevG~~---------------~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIf 341 (1187)
T COG1110 285 TGKPRGSRLKLFRELLG----FEVGSG---------------GEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIF 341 (1187)
T ss_pred cCCCCCchHHHHHHHhC----CccCcc---------------chhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEE
Confidence 986532 122222222 122222 34556777666665 444555556665554 47999
Q ss_pred cCc---hhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 194 FMT---CACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 194 ~~t---~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
++. ++.|++++.+|..+ |+++..+|++
T Consensus 342 V~~d~G~e~aeel~e~Lr~~----Gi~a~~~~a~ 371 (1187)
T COG1110 342 VPIDYGREKAEELAEYLRSH----GINAELIHAE 371 (1187)
T ss_pred EEcHHhHHHHHHHHHHHHhc----CceEEEeecc
Confidence 999 99999999999999 9999999986
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=9.5e-12 Score=108.68 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=130.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++=+|-++|.+|-++.+.. .|. -|++.+|+... +-.+--+|+|-|-|..|+.+ +.--.+.+.-+|
T Consensus 175 VIYTSPIKALSNQKYREl~~---EF~--DVGLMTGDVTI--------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVI 240 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLE---EFK--DVGLMTGDVTI--------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVI 240 (1041)
T ss_pred EEeeChhhhhcchhHHHHHH---Hhc--ccceeecceee--------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEE
Confidence 67888999999997776654 332 45666776554 34456889999999999998 877889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC---CCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.|=+...+-.++.-+=.+|.+.+.+++|||+|+. .+++++... .|..+.-. +..
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYT-----------------dyR 302 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYT-----------------DYR 302 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEee-----------------cCC
Confidence 999999998877776666666789999999999999974 777776432 55443322 346
Q ss_pred CccceEEEEEcCCC--------------C--------------------------------------cHHHHHHHHHhCC
Q 026925 159 PLGLHLEYLECEPD--------------E--------------------------------------KPSQLVDLLIKNK 186 (230)
Q Consensus 159 ~~~i~~~~~~~~~~--------------~--------------------------------------k~~~l~~ll~~~~ 186 (230)
|..++|+.+..... + -+..+...+-...
T Consensus 303 PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~ 382 (1041)
T KOG0948|consen 303 PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERN 382 (1041)
T ss_pred CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhc
Confidence 77788876664410 0 0112233333456
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhh
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..|+|||+-++++||.+|..+.++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccC
Confidence 679999999999999999999876
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=6.4e-12 Score=113.59 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=73.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccCC-----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFR----- 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~~----- 75 (230)
++||+||++||.|+..++..+...+ ++++..+.||.+..++...+ +|||+||||++| .++++. +.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd-~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRD-NSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhC-CCCCcCHHHhh
Confidence 6899999999999999999999887 89999999999888776554 599999999999 999987 656655
Q ss_pred --cccEEEEecccccc
Q 026925 76 --NLEILVLDEADRLL 89 (230)
Q Consensus 76 --~l~~lVvDEad~l~ 89 (230)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999997
No 99
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.31 E-value=7e-11 Score=85.11 Aligned_cols=112 Identities=38% Similarity=0.609 Sum_probs=83.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|++.++.|....+...... +..+..+.++.......... ..+.+|+++|++.+...+.. ........+++|
T Consensus 33 ~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~ii 108 (144)
T cd00046 33 VLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL-SGKTDIVVGTPGRLLDELER-LKLSLKKLDLLI 108 (144)
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-cCCCCEEEECcHHHHHHHHc-CCcchhcCCEEE
Confidence 689999999999999999988753 46677777766554444333 57899999999999888776 445567889999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+||+|.+....+...............+++++|||.
T Consensus 109 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 109 LDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999876654443222334445678899999994
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.30 E-value=7.5e-11 Score=108.75 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..|...+.++++....+|+||||+++..|..++..|.... |+++..+||+|++.|
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~---Gi~~~~ihG~~s~~e 532 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE---GIRAAVFHEGMSIIE 532 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc---CeeEEEEECCCCHHH
Confidence 3477788899988888999999999999999999995433 999999999999754
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.14 E-value=7.6e-09 Score=83.60 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=121.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+.|.+|--+.|.+++..++... ++..+..++|+++.. ...+++|+|-..++++-+. ++++|
T Consensus 147 vciASPRvDVclEl~~Rlk~aF---~~~~I~~Lyg~S~~~--------fr~plvVaTtHQLlrFk~a--------FD~li 207 (441)
T COG4098 147 VCIASPRVDVCLELYPRLKQAF---SNCDIDLLYGDSDSY--------FRAPLVVATTHQLLRFKQA--------FDLLI 207 (441)
T ss_pred EEEecCcccchHHHHHHHHHhh---ccCCeeeEecCCchh--------ccccEEEEehHHHHHHHhh--------ccEEE
Confidence 3567888899999888888764 356788889887642 3367888888777665543 55999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
|||+|.+.-..-...-....+......-+|.+|||.++.++.-.... +-..+.+.... +..|-.
T Consensus 208 IDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~Rf--------------H~~pLp 271 (441)
T COG4098 208 IDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARF--------------HGKPLP 271 (441)
T ss_pred EeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhh--------------cCCCCC
Confidence 99999875332222223334445567788999999987666555432 33334443331 223333
Q ss_pred ceEEEEEcCCC------CcH-HHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 162 LHLEYLECEPD------EKP-SQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 162 i~~~~~~~~~~------~k~-~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.. |+.+..- .|+ ..+...|+++ .+.|++||+++.+..++++..|++.+ +....+++|+.-.
T Consensus 272 vPk-f~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~ 342 (441)
T COG4098 272 VPK-FVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQ 342 (441)
T ss_pred CCc-eEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCc
Confidence 332 3333322 223 3666777655 55899999999999999999997763 3445688887643
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.12 E-value=2.1e-09 Score=101.19 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=72.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC----CcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~----~~~~~~~l 77 (230)
+|+|||+++|+.|..+.+..+.... ...+..+.+.... ..........|+|+|.+++...+... ..+.+.+.
T Consensus 466 VLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i~~L---~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f 541 (1123)
T PRK11448 466 ILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDIKGL---EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY 541 (1123)
T ss_pred EEEEecHHHHHHHHHHHHHhccccc-ccchhhhhchhhh---hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc
Confidence 6899999999999999998874221 1111111111100 11111345789999999987764321 12457888
Q ss_pred cEEEEecccccccc---------------ccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 78 EILVLDEADRLLDM---------------GFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 78 ~~lVvDEad~l~~~---------------~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
++||+||||+-... .+...++.++.++. .-.++||||...
T Consensus 542 dlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r 596 (1123)
T PRK11448 542 DCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPAL 596 (1123)
T ss_pred cEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCcc
Confidence 99999999996421 12456777888763 467999999753
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=1.3e-09 Score=98.11 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~ 74 (230)
.+-|++||--||.|-+.++.++...+ |++++.+.++.+..+.... -.+||+.||...+- ++++.+ ...-.
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r~~~---y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~ 198 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEKRAA---YNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHH---hcCCCeecCCccccccchhhccccchhhhhc
Confidence 36799999999999999999999998 9999999887666554433 35899999998863 234331 11124
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.+.||||+|.++
T Consensus 199 r~~~~aIvDEvDSiL 213 (796)
T PRK12906 199 RPLNYAIVDEVDSIL 213 (796)
T ss_pred cCcceeeeccchhee
Confidence 578899999999886
No 104
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=96.25 Aligned_cols=120 Identities=14% Similarity=0.212 Sum_probs=86.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc-CCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~-~~~l~~l 80 (230)
+|+++||+-|+.|..+.+...+.+ ..+....||.........+ -...+|+|.||+.+...++. +..+ ++++.++
T Consensus 109 iVF~aP~~pLv~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i-~~s~~vff~TpQil~ndL~~-~~~~~ls~fs~i 183 (746)
T KOG0354|consen 109 VVFLAPTRPLVNQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEI-VASKRVFFRTPQILENDLKS-GLHDELSDFSLI 183 (746)
T ss_pred EEEeeCCchHHHHHHHHHhhccCc---ccceeeccCccCCCchhhh-hcccceEEeChHhhhhhccc-ccccccceEEEE
Confidence 689999999999988766666533 3555555553333222233 25689999999999999887 4444 6999999
Q ss_pred EEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 81 VLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 81 VvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
||||||+-... .|...++..+..-....|++++|||.....+...+
T Consensus 184 v~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~ 230 (746)
T KOG0354|consen 184 VFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQN 230 (746)
T ss_pred EEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHH
Confidence 99999998755 36666656665555566999999998865554443
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.89 E-value=1.6e-08 Score=92.29 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=117.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH-------------HHHhcCCcEEEEcChHHHHHHhh
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK-------------KIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-------------~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
.+.+.|++.+++++++.+++..... .+.....++......... .....-..+.++||.........
T Consensus 249 ~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~ 327 (733)
T COG1203 249 VIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK 327 (733)
T ss_pred EEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc
Confidence 5789999999999999999876543 222221233222111100 00011234555555554442111
Q ss_pred CCccc-C--CcccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCccc
Q 026925 69 MDVLD-F--RNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSH 144 (230)
Q Consensus 69 ~~~~~-~--~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 144 (230)
...+. + -....+|+||+|.+.+......+..++..+. ....++++|||+|+...+.....+.....+........
T Consensus 328 ~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~- 406 (733)
T COG1203 328 GFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCP- 406 (733)
T ss_pred ccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccc-
Confidence 01111 1 2346799999998766533444444444443 36788999999999999988888776655443211000
Q ss_pred ccccchhccccCCCCccceEEEEEcCCCCcHHHHHH-HHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 145 HVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD-LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
. ..-+..................... ......+++++|-|||+..|.+++..|+.. +.++..+||
T Consensus 407 -------~---~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----~~~v~LlHS 472 (733)
T COG1203 407 -------K---EDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----GPKVLLLHS 472 (733)
T ss_pred -------c---ccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----CCCEEEEec
Confidence 0 0000000000000000000011111 112346789999999999999999999998 558999999
Q ss_pred CCCCC
Q 026925 224 KMKQV 228 (230)
Q Consensus 224 ~~~~~ 228 (230)
.+...
T Consensus 473 Rf~~~ 477 (733)
T COG1203 473 RFTLK 477 (733)
T ss_pred ccchh
Confidence 98753
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.84 E-value=6.3e-09 Score=93.56 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEEEE
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEILVL 82 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVv 82 (230)
.+.|--.-++.-...+..+.... |+.+-...|..++.... +.-++-|+|-|+-+.++.. -..-++..++++||
T Consensus 274 lilp~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvV 347 (1008)
T KOG0950|consen 274 LILPYVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVV 347 (1008)
T ss_pred EecceeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEE
Confidence 33343334444444555555555 67776666666554332 3457999999997666543 12235778999999
Q ss_pred eccccccccccHHHHHHHHHhC---C--CCCcEEEEeecCchHHHHHHHhccC
Q 026925 83 DEADRLLDMGFQKQISYIISRL---P--KLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~i~~~l---~--~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
||.|.+.+.+.+..++.++..+ . ...|+|++|||+++ ..++..|+.
T Consensus 348 dElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~ 398 (1008)
T KOG0950|consen 348 DELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN--NSLLQDWLD 398 (1008)
T ss_pred eeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC--hHHHHHHhh
Confidence 9999999998888888877554 2 23579999999997 455555555
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.79 E-value=1.8e-07 Score=87.27 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=69.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
.|||||.. +..|+.+.+.+++ |.+++..+.|......... .+..++++|+|+|++.+..... .+.--+.++
T Consensus 222 ~LIVvP~S-lL~nW~~Ei~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~ 294 (1033)
T PLN03142 222 HMVVAPKS-TLGNWMNEIRRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRY 294 (1033)
T ss_pred EEEEeChH-HHHHHHHHHHHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCE
Confidence 58999965 5567888888875 4567777777654322211 1223578999999998765432 233345789
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+|+||||++-+.. ......+..+... ..+++|+|.
T Consensus 295 VIvDEAHrIKN~~--Sklskalr~L~a~-~RLLLTGTP 329 (1033)
T PLN03142 295 IIIDEAHRIKNEN--SLLSKTMRLFSTN-YRLLITGTP 329 (1033)
T ss_pred EEEcCccccCCHH--HHHHHHHHHhhcC-cEEEEecCC
Confidence 9999999986542 3344455556433 456778994
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.77 E-value=4.7e-07 Score=82.69 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=122.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
.+.-|-|--|.-+...+..-...-+|-.|+.-....+.. +..-.|-++|.+.|++.+.. ...++.++++|+
T Consensus 98 ~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~-------s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIi 168 (845)
T COG1643 98 GCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV-------SPRTRIKVMTDGILLREIQN--DPLLSGYSVVII 168 (845)
T ss_pred EecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC-------CCCceeEEeccHHHHHHHhh--CcccccCCEEEE
Confidence 344566644444444444333222243444443322221 34567999999999999985 345899999999
Q ss_pred ecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 83 DEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 83 DEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
||+|.=. +.. -...+..++...+....+|.+|||+.. +.+.. ++.+.-.+.+... ..
T Consensus 169 DEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~--~rfs~-~f~~apvi~i~GR----------------~f-- 227 (845)
T COG1643 169 DEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA--ERFSA-YFGNAPVIEIEGR----------------TY-- 227 (845)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH--HHHHH-HcCCCCEEEecCC----------------cc--
Confidence 9999632 222 233455667777778999999999985 44544 5555444444333 12
Q ss_pred cceEEEEEcC-CCC-cHHHHHHHHH---hCCCCeEEEEcCchhHHHHHHHHhhh-hhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECE-PDE-KPSQLVDLLI---KNKSKKIIIYFMTCACVDYWGVVLPR-LAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~-~~~-k~~~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~-~~~~~g~~~~~lh~~~~~~e 229 (230)
.++-+|.... ..+ -.+.+...+. ..+.+.+|||.+-+++.+.++..|.+ .+ .....+.++||.|+.+|
T Consensus 228 PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l-~~~~~i~PLy~~L~~~e 301 (845)
T COG1643 228 PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAEL-GDDLEILPLYGALSAEE 301 (845)
T ss_pred ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccc-cCCcEEeeccccCCHHH
Confidence 2232332222 222 2233333333 44678999999999999999999998 22 13689999999999764
No 109
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.77 E-value=4.3e-08 Score=87.40 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC----CcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~----~~~~~~~l 77 (230)
+|.|+-.+.|+.|.+..++.+... -.......+... ...++|-++|..++..-+... ..+....+
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~P~---~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFLPF---GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhCCC---ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 688999999999999888887543 233322222211 134789999999988877652 24556779
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
++||+||||+ |.....+.|+.++....|.+ +||..+..
T Consensus 287 DlIvIDEaHR----gi~~~~~~I~dYFdA~~~gL--TATP~~~~ 324 (875)
T COG4096 287 DLIVIDEAHR----GIYSEWSSILDYFDAATQGL--TATPKETI 324 (875)
T ss_pred eEEEechhhh----hHHhhhHHHHHHHHHHHHhh--ccCccccc
Confidence 9999999998 45555567888885444333 78865533
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.76 E-value=5.5e-07 Score=81.54 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcc-cE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNL-EI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l-~~ 79 (230)
+|+|+|+.+|..|+.+.+..+.... .. +..+...-...+......|+|+|.+++...+.. ...+...+- .+
T Consensus 296 vl~lvdR~~L~~Q~~~~f~~~~~~~--~~-----~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 296 VFFVVDRRELDYQLMKEFQSLQKDC--AE-----RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred EEEEECcHHHHHHHHHHHHhhCCCC--Cc-----ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 6899999999999999999875321 11 111122222333334578999999999864432 011221111 28
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+|+||||+.-..++... +.+.+| +...++||||.-
T Consensus 369 vIvDEaHrs~~~~~~~~---l~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKN---LKKALK-NASFFGFTGTPI 403 (667)
T ss_pred EEEEcCccccchHHHHH---HHhhCC-CCcEEEEeCCCc
Confidence 99999999754433332 224454 567899999974
No 111
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.65 E-value=1.4e-07 Score=71.39 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE-----------EcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL-----------VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~-----------~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+++++|+..|+.|+.+.+..+.... ...... ..................+++++|.+++........
T Consensus 53 ~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 53 VLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred eeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 6899999999999999997765432 111110 001010111122224678999999999988875411
Q ss_pred ----------cccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 71 ----------VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 71 ----------~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
.......+++|+||||+..+..- ...++. .....++++|||..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp -------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 12345678999999999754431 344444 55777899999965
No 112
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=8.4e-08 Score=81.59 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=128.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE--------EcC--------cchHHHHHHHHh----------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL--------VGG--------VEVKADVKKIEE---------------- 49 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~--------~~~--------~~~~~~~~~l~~---------------- 49 (230)
+||+||+|+-|-.+-+.+..++.+.-+-+...+ ++| .+.+++.+.+..
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 799999999999999999988543311111111 111 112222222211
Q ss_pred --------cCCcEEEEcChHHHHHHhhC----Cccc-CCcccEEEEeccccccccccHHHHHHHHHhC---CCC------
Q 026925 50 --------EGANLLIGTPGRLYDIMERM----DVLD-FRNLEILVLDEADRLLDMGFQKQISYIISRL---PKL------ 107 (230)
Q Consensus 50 --------~~~~Iiv~TP~~l~~~l~~~----~~~~-~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l---~~~------ 107 (230)
...||||++|--|..++.+. ..++ ++++.++|||.||.++... -+++..|++++ |..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 24899999999988878631 1233 7999999999999887543 23444555444 322
Q ss_pred ---------------CcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEc--
Q 026925 108 ---------------RRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLEC-- 169 (230)
Q Consensus 108 ---------------~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 169 (230)
+|+++||+-..+....+...++.+.- .+........+ +. ....-.+.|.|..+
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g----si-----~~v~~~l~Qvf~ri~~ 525 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG----SI-----SNVGIPLCQVFQRIEV 525 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC----ch-----hhccchhhhhhhheec
Confidence 48999999999989999988887653 44433331100 00 11111222222222
Q ss_pred CC-----CCcHHH----HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 170 EP-----DEKPSQ----LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 170 ~~-----~~k~~~----l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+. ..+... ++.-+.+....-+|||.++.-+-.++.+++.+. ++.+.-+|...++
T Consensus 526 ~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e----~i~F~~i~EYssk 588 (698)
T KOG2340|consen 526 KSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE----EISFVMINEYSSK 588 (698)
T ss_pred cCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh----hcchHHHhhhhhH
Confidence 21 122222 222233334556899999999999999999988 7777666654443
No 113
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.58 E-value=1.8e-07 Score=67.20 Aligned_cols=103 Identities=10% Similarity=0.100 Sum_probs=63.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+|||.++..+.+.++.. ++++..-..+. .. .++.-|-++|.+.+...+-+ .....+.+++|
T Consensus 36 vLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~-------~~-~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II 100 (148)
T PF07652_consen 36 VLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR-------TH-FGSSIIDVMCHATYGHFLLN--PCRLKNYDVII 100 (148)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEE
T ss_pred EEEecccHHHHHHHHHHHhcC-----CcccCceeeec-------cc-cCCCcccccccHHHHHHhcC--cccccCccEEE
Confidence 699999999999877777643 34433111110 11 36667889999998887754 45578999999
Q ss_pred Eeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 82 LDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 82 vDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
+||+|-.-... +...+.+.- .. ....+|++|||.|...
T Consensus 101 ~DEcH~~Dp~sIA~rg~l~~~~-~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 101 MDECHFTDPTSIAARGYLRELA-ES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ECTTT--SHHHHHHHHHHHHHH-HT-TS-EEEEEESS-TT--
T ss_pred EeccccCCHHHHhhheeHHHhh-hc-cCeeEEEEeCCCCCCC
Confidence 99999654332 333333332 22 3467999999988754
No 114
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.57 E-value=1.8e-06 Score=76.64 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=64.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH--HHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV--KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||++|-..|.+ ++..+.+..|+++++.+.|+....... ..+..++.||+|||.+....- . ..+.--+.+++
T Consensus 221 LVi~P~StL~N----W~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k-~~lk~~~W~yl 293 (971)
T KOG0385|consen 221 LVIAPKSTLDN----WMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--K-SFLKKFNWRYL 293 (971)
T ss_pred EEEeeHhhHHH----HHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--H-HHHhcCCceEE
Confidence 79999888765 445555556788999999986433222 123346899999999986443 1 33444667899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLR 108 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~ 108 (230)
||||||++-+. ...+..+++.+....
T Consensus 294 vIDEaHRiKN~--~s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 294 VIDEAHRIKNE--KSKLSKILREFKTDN 319 (971)
T ss_pred Eechhhhhcch--hhHHHHHHHHhcccc
Confidence 99999999664 233345555554333
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=2.7e-06 Score=76.07 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~ 75 (230)
+-|++||--||.|-+.++.++...+ |+++..+.++.+..+....+ .|||..||...+- ++++.+ ...-.+
T Consensus 122 VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R 197 (764)
T PRK12326 122 VHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSP 197 (764)
T ss_pred eEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCC
Confidence 6789999999999999999999988 99999998887766544444 5899999998752 233320 112246
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 198 ~~~faIVDEvDSiL 211 (764)
T PRK12326 198 NPDVAIIDEADSVL 211 (764)
T ss_pred ccceeeecchhhhe
Confidence 68899999999886
No 116
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.47 E-value=4.8e-06 Score=76.11 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=66.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.+-|++||--||.|-+.++..+...+ |+++.++.++.+..+....+ .+||++||...+ -++|+.+ ...-.
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vq 200 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQ 200 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcc
Confidence 36799999999999999999999888 99999998887766555444 389999999886 2233321 11124
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.+.||||+|.++
T Consensus 201 r~l~~aIVDEvDsiL 215 (913)
T PRK13103 201 RELNFAVIDEVDSIL 215 (913)
T ss_pred cccceeEechhhhee
Confidence 889999999999986
No 117
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.39 E-value=6.9e-07 Score=81.01 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=77.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~~~l~~ 79 (230)
+|+++||++|++|+...+....+.-.-.+...+.|....+.++. .-.|+|+|+-|+++-.++-.. ..-..+++++
T Consensus 559 VIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 559 VIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 68899999999999877765542111123334445444333332 236999999999998887651 2234789999
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
+|+||+|.+-+..-.-.++.++... .+.++++|||+.+
T Consensus 636 iIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN 673 (1330)
T KOG0949|consen 636 IIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGN 673 (1330)
T ss_pred EEechhhhccccccchHHHHHHHhc--CCCeeEEecccCC
Confidence 9999999886554444445555444 5778999999975
No 118
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.28 E-value=1.7e-05 Score=73.93 Aligned_cols=180 Identities=17% Similarity=0.310 Sum_probs=113.4
Q ss_pred eEEEeCChhhHHHHHHHH-HHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVA-QPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++++|..+.+...+..+ .+|... -|.+++.++|..+..-. + ....+|+|+||++...+ + ..+.+++.
T Consensus 1189 ~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk---l-~~~~~vii~tpe~~d~l-q-----~iQ~v~l~ 1257 (1674)
T KOG0951|consen 1189 AVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK---L-LQKGQVIISTPEQWDLL-Q-----SIQQVDLF 1257 (1674)
T ss_pred EEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH---H-hhhcceEEechhHHHHH-h-----hhhhcceE
Confidence 689999999996555444 444444 37888888887665322 2 24568999999997555 3 36889999
Q ss_pred EEeccccccccccHH------HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccc
Q 026925 81 VLDEADRLLDMGFQK------QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 81 VvDEad~l~~~~~~~------~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
|.||+|.+-+. +++ .++.|.+.+-++.+++++|..+.+. +.+ .++.....+.+.++.
T Consensus 1258 i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~------------- 1320 (1674)
T KOG0951|consen 1258 IVDELHLIGGV-YGAVYEVICSMRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSV------------- 1320 (1674)
T ss_pred eeehhhhhccc-CCceEEEEeeHHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCccc-------------
Confidence 99999966532 221 1566677777889999999988753 444 344455555555441
Q ss_pred cCCCCccceEEEEEcCC-CCcH-HHHHH---HHH--hCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 155 SSKTPLGLHLEYLECEP-DEKP-SQLVD---LLI--KNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~~~-~~k~-~~l~~---ll~--~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|-.++-.-+.... ..++ .+... .+. ....++++||.++++.|..++..|...
T Consensus 1321 -R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~ 1382 (1674)
T KOG0951|consen 1321 -RPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTF 1382 (1674)
T ss_pred -CCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchh
Confidence 1222223222222221 1121 22222 222 236679999999999999998877654
No 119
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.28 E-value=2.8e-05 Score=70.92 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=65.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~ 75 (230)
|-|++++..||.+-+.++..+...+ |+.++...++.+..+....+ .+||+.||...+- ++++.+ ...-.+
T Consensus 120 VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 120 VHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhcc
Confidence 5689999999999999999999998 99999988887766554444 4899999998653 333321 111246
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 196 ~~~faIVDEvDSiL 209 (870)
T CHL00122 196 PFNYCIIDEVDSIL 209 (870)
T ss_pred ccceeeeecchhhe
Confidence 78899999999986
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.24 E-value=4.1e-05 Score=69.22 Aligned_cols=169 Identities=16% Similarity=0.248 Sum_probs=104.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+||||+|-..|--|+.+.++... +.++..++++-+..+... .+.++...|+|||=..+ + ..++++
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---F-----~Pf~~L 314 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---F-----LPFKNL 314 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh---c-----Cchhhc
Confidence 58999999999999888888764 568888888766554444 44568899999986432 1 247889
Q ss_pred cEEEEeccccccc---cc---cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 78 EILVLDEADRLLD---MG---FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 78 ~~lVvDEad~l~~---~~---~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
.+|||||=|--.= .+ +..++--... -..++.+++-|||.+ ++.+.+.--+....+.......
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~--------- 382 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-KKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAG--------- 382 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHH-HHhCCCEEEecCCCC--HHHHHhhhcCceEEEEcccccc---------
Confidence 9999999997641 11 2222222222 235889999999955 5555554323333444433310
Q ss_pred ccccCCCCccceEEEEEcCC--CCcH----HHHHHHHHh--CCCCeEEEEcCchhH
Q 026925 152 QLASSKTPLGLHLEYLECEP--DEKP----SQLVDLLIK--NKSKKIIIYFMTCAC 199 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~--~~k~----~~l~~ll~~--~~~~~~lIF~~t~~~ 199 (230)
...+..+. ++.+.. .+.. ..+++.+++ ..++++|+|.|++--
T Consensus 383 ----~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGy 432 (730)
T COG1198 383 ----RARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGY 432 (730)
T ss_pred ----ccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCc
Confidence 11122222 333322 2221 455555543 377899999998753
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.22 E-value=4e-06 Score=68.47 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=66.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh--CCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~--~~~~~~~~l~~ 79 (230)
+||++|+ .+..|+..++.+++... ..++....++.......... ....+++++|.+.+...-.. ...+.--+.+.
T Consensus 61 ~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 61 TLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ-LPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred eeEeecc-chhhhhhhhhccccccc-cccccccccccccccccccc-cccceeeecccccccccccccccccccccccee
Confidence 6999999 77789999999987542 56777776665222221111 35689999999998711000 01122245889
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+|+||+|.+-+.. ......+..+. ....+++|||.
T Consensus 138 vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-
T ss_pred EEEeccccccccc--ccccccccccc-cceEEeecccc
Confidence 9999999884332 22233344454 66678889994
No 122
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=6.1e-05 Score=68.88 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-----HHHHhh-CCcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-----YDIMER-MDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-----~~~l~~-~~~~~~~ 75 (230)
|-|++++--||..=..++..+...+ |+.++...++.+..+.... -.|||++||+..+ .+.+.. ....-.+
T Consensus 129 VhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 129 VHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEERKKN---YACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred eEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHHHHHh---cCCCeEEecCCcccccchhhhhcccccccccC
Confidence 5689999999999999999999988 9999998877665544333 4699999999987 444432 1223357
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 88999999999986
No 123
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.13 E-value=5e-06 Score=65.86 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=66.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcC-cchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG-VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|||+.+-.-|..+.+.++.|... +..++.+.+- ...+++...+.+...+|.||||+|+..++.. +.+.++++.+|
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccCeEE
Confidence 688888888888888888877422 3455555554 4677888888667899999999999999988 99999999999
Q ss_pred EEeccc
Q 026925 81 VLDEAD 86 (230)
Q Consensus 81 VvDEad 86 (230)
|+|--|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999754
No 124
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.12 E-value=0.00042 Score=61.11 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=97.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
..-.|.+.|-+.|++-+-. .-.+++.+.+|+||||-=. .-+ ....++.|++.. ....+|.+|||+.. .....
T Consensus 139 ~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda---~kfS~ 212 (674)
T KOG0922|consen 139 KDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDA---EKFSE 212 (674)
T ss_pred CceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecH---HHHHH
Confidence 3456999999998886653 3457899999999999521 000 222333333333 35689999999983 34455
Q ss_pred ccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcH-H---HHHHHHHhCCCCeEEEEcCchhHHHHH
Q 026925 128 GLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKP-S---QLVDLLIKNKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~---~l~~ll~~~~~~~~lIF~~t~~~~~~l 203 (230)
||.+...+.+... .-.+...|..-+..+=+ + .+.++-...+.+-+|||-+.+++.+.+
T Consensus 213 yF~~a~i~~i~GR------------------~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 213 YFNNAPILTIPGR------------------TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred HhcCCceEeecCC------------------CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 6666555555443 12233334443332222 2 222222345667899999999999999
Q ss_pred HHHhhhhhccCCce----EEeccCCCCCCC
Q 026925 204 GVVLPRLAVLKSLS----LIPLHGKMKQVG 229 (230)
Q Consensus 204 ~~~L~~~~~~~g~~----~~~lh~~~~~~e 229 (230)
+..|.+.....+.. ..++||.|+.+|
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~ 304 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEE 304 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHH
Confidence 99998873222222 468999999765
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.04 E-value=0.00012 Score=62.59 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------CcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~~ 74 (230)
+|||+.+.--+.|+..++..++.-- +-.++-.+++... ....++.|+|+|...+..-=+++ .-+.-
T Consensus 348 clvLcts~VSVeQWkqQfk~wsti~-d~~i~rFTsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRFTSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcccC-ccceEEeeccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 6899999999999999999987543 3455555554321 11578899999997653311110 01224
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
....++++||+|.+.+.=|+..+.-+..+. .++++||+-.
T Consensus 421 ~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvR 460 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVR 460 (776)
T ss_pred CeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEee
Confidence 678899999999887766766555554444 3677899743
No 126
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.02 E-value=0.00037 Score=63.11 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=76.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++|||+|...|+.|+.+.++...+ +-.+..++++.+..+... .+.++...|+|||-..+. ..++++
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF--------aP~~~L 258 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF--------APVEDL 258 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE--------eccCCC
Confidence 489999999999999998887542 256788888877665554 344577899999986431 247889
Q ss_pred cEEEEecccccc-ccc--cHHHHHHH--HHhCCCCCcEEEEeecCchHHHHHH
Q 026925 78 EILVLDEADRLL-DMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 78 ~~lVvDEad~l~-~~~--~~~~~~~i--~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
.+|||||=|.-. ..+ -..+.+.+ ++.-.....+++-|||.+-+.....
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 999999998653 211 11122222 2222357889999999775544443
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.92 E-value=0.001 Score=61.52 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=99.8
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
.-++++|-+-|++.+.. .-.+.++.++|+||+|-=- +..|.-.+.+.+-..++..++|++|||+. .+....|+.
T Consensus 265 t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d---ae~fs~YF~ 339 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD---AELFSDYFG 339 (924)
T ss_pred eeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc---hHHHHHHhC
Confidence 56999999999998864 4457899999999999642 33344433333333346889999999988 344445565
Q ss_pred CCeEEEEeccCc-ccccc-cch-hccccCCCCccceEE------------EEEcCCCCcHHHHHHHHH----hCCCCeEE
Q 026925 131 NPVRVEVRAESK-SHHVS-ASS-QQLASSKTPLGLHLE------------YLECEPDEKPSQLVDLLI----KNKSKKII 191 (230)
Q Consensus 131 ~~~~i~~~~~~~-~~~~~-~~~-~~~~~~~~~~~i~~~------------~~~~~~~~k~~~l~~ll~----~~~~~~~l 191 (230)
+.-.+.+..... ..... ++. ... ......-.++ .....++...+.+..++. ....+.+|
T Consensus 340 ~~pvi~i~grtfpV~~~fLEDil~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaIL 417 (924)
T KOG0920|consen 340 GCPVITIPGRTFPVKEYFLEDILSKT--GYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAIL 417 (924)
T ss_pred CCceEeecCCCcchHHHHHHHHHHHh--cccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEE
Confidence 554444432211 00000 000 000 0000000000 111112234445555544 33567999
Q ss_pred EEcCchhHHHHHHHHhhhhhccC---CceEEeccCCCCCCC
Q 026925 192 IYFMTCACVDYWGVVLPRLAVLK---SLSLIPLHGKMKQVG 229 (230)
Q Consensus 192 IF~~t~~~~~~l~~~L~~~~~~~---g~~~~~lh~~~~~~e 229 (230)
||-+...+...+...|....... .+-+.++|+.|+..|
T Consensus 418 VFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~e 458 (924)
T KOG0920|consen 418 VFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEE 458 (924)
T ss_pred EEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHH
Confidence 99999999999999997532112 367889999998753
No 128
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.00022 Score=61.45 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=81.0
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc--c-cHHH---HHHHHHh---CC---------------CCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--G-FQKQ---ISYIISR---LP---------------KLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~--~-~~~~---~~~i~~~---l~---------------~~~q~i~ 112 (230)
-+|-+|.+++.. =-++++||-|..+.. | |..+ -+.+..+ +| ...|+++
T Consensus 320 e~P~tL~DYfp~--------d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~ 391 (663)
T COG0556 320 EPPYTLFDYFPD--------DFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIY 391 (663)
T ss_pred cCCCcHHHhCCc--------ceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEE
Confidence 467777776643 127999999988642 1 2222 2223222 22 1369999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~ 190 (230)
+|||..+.-.+... -.-...+ +.+.+ ...+. +..-+....++-|+.-++. ..+.++
T Consensus 392 VSATPg~~E~e~s~--~~vveQi-IRPTG---------------LlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRv 449 (663)
T COG0556 392 VSATPGDYELEQSG--GNVVEQI-IRPTG---------------LLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERV 449 (663)
T ss_pred EECCCChHHHHhcc--CceeEEe-ecCCC---------------CCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeE
Confidence 99998764333322 1111122 11221 11111 1122333444444444432 366899
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
||-+-|+++||.|..+|.+. |+++..+|+++.
T Consensus 450 LVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdid 481 (663)
T COG0556 450 LVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDID 481 (663)
T ss_pred EEEeehHHHHHHHHHHHHhc----CceEEeeeccch
Confidence 99999999999999999999 999999999875
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.91 E-value=6.9e-05 Score=65.02 Aligned_cols=192 Identities=8% Similarity=-0.041 Sum_probs=113.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEE-EcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CC--cccCCccc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLL-VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MD--VLDFRNLE 78 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~-~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~--~~~~~~l~ 78 (230)
+++.||+++++...+-+.-.....|..+...+ +.+...+.....+.+.+..+|++.|..+...+-- +. ...+-...
T Consensus 335 ~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~ 414 (1034)
T KOG4150|consen 335 LLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEEL 414 (1034)
T ss_pred ecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHH
Confidence 56778888876533322222222221111111 2222223344566678999999999987665432 11 11245567
Q ss_pred EEEEecccccccc--ccHH-HHHHHHHhC-----CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 79 ILVLDEADRLLDM--GFQK-QISYIISRL-----PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 79 ~lVvDEad~l~~~--~~~~-~~~~i~~~l-----~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+.++||+|..+.. .... .++++++.+ ..+.|++-.|||+-+.++.+...+--+...+...+.
T Consensus 415 ~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG---------- 484 (1034)
T KOG4150|consen 415 CKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG---------- 484 (1034)
T ss_pred HhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC----------
Confidence 8999999965432 2222 333333333 236799999999998888777766545444433333
Q ss_pred hccccCCCCccceEEEEEcCC---------CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhh
Q 026925 151 QQLASSKTPLGLHLEYLECEP---------DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLA 211 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~ 211 (230)
.|..-++++..-++ ++++.-..+++.. ..+-++|-||.+++-|+-+-...++.+
T Consensus 485 -------SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~ 549 (1034)
T KOG4150|consen 485 -------SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREIL 549 (1034)
T ss_pred -------CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHH
Confidence 57777888877663 1233333333332 366799999999999998877766553
No 130
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.89 E-value=3.8e-05 Score=68.64 Aligned_cols=116 Identities=15% Similarity=0.233 Sum_probs=72.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-c--CCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-E--GANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-~--~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
||+||+..|- +|++.|...+|.+++...+|.-...++.+.... . ++|||++|......--....-+.-.++++
T Consensus 452 LVVvPsSTle----NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~ 527 (941)
T KOG0389|consen 452 LVVVPSSTLE----NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNY 527 (941)
T ss_pred EEEecchhHH----HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccE
Confidence 7999998875 456666666678899888887765555554432 2 68999999976532111101123477889
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHHHH
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELS 125 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~~~ 125 (230)
+|+||.|.+-+.+ -+.+.++++ ++ ..+.++++.| +-+++.++.
T Consensus 528 viyDEgHmLKN~~-SeRy~~LM~-I~-An~RlLLTGTPLQNNL~ELi 571 (941)
T KOG0389|consen 528 VIYDEGHMLKNRT-SERYKHLMS-IN-ANFRLLLTGTPLQNNLKELI 571 (941)
T ss_pred EEecchhhhhccc-hHHHHHhcc-cc-ccceEEeeCCcccccHHHHH
Confidence 9999999775543 333444432 33 4455666666 344444443
No 131
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.83 E-value=0.0013 Score=59.29 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 172 DEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 172 ~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..|+.++..+|+.. .+.++|.|..++.+.+.+-.+|... +||...-+-|..+.
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~---~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA---KGYSYLRMDGTTPA 583 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc---CCceEEEecCCCcc
Confidence 35788888888743 5679999999999999999999842 29999998887764
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.81 E-value=0.00065 Score=62.24 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=61.2
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH-HHhhCC-----cccCCc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERMD-----VLDFRN 76 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~-~l~~~~-----~~~~~~ 76 (230)
=|++.+--||..=..++..+...+ |++++....+.+..+....+ .|||.+||...|-- +++.+- ..-.+.
T Consensus 123 hVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~ 198 (925)
T PRK12903 123 IVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRG 198 (925)
T ss_pred EEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcc
Confidence 467777889988888888888888 99999888776665544443 58999999988632 444311 112477
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
+.+.||||+|.++
T Consensus 199 ~~faIVDEVDSIL 211 (925)
T PRK12903 199 LNFCLIDEVDSIL 211 (925)
T ss_pred cceeeeccchhee
Confidence 8899999999986
No 133
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.81 E-value=0.0015 Score=59.46 Aligned_cols=206 Identities=12% Similarity=0.131 Sum_probs=117.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++..+.|+.++...+.... ++++....-.++. .+.....+-++...++|.++-. -.+.+.+++|
T Consensus 81 VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~-------~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVI 147 (824)
T PF02399_consen 81 VLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDY-------IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVI 147 (824)
T ss_pred EEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccc-------cccccccCeEEEEehhhhhccc----ccccccCEEE
Confidence 6889999999999888887652 2132211111111 1112346777887777655432 2466789999
Q ss_pred EeccccccccccHHHH-------HHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeE-EEEeccCcccccccch---
Q 026925 82 LDEADRLLDMGFQKQI-------SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR-VEVRAESKSHHVSASS--- 150 (230)
Q Consensus 82 vDEad~l~~~~~~~~~-------~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~--- 150 (230)
+||+...+..=|.+.+ ..+...+.....+|++-|++++..-.++..+.++... +....-...++....-
T Consensus 148 IDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~ 227 (824)
T PF02399_consen 148 IDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFL 227 (824)
T ss_pred EehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEe
Confidence 9999988764332222 2233445567789999999999999998887664433 2222211111211100
Q ss_pred ---------h--cccc---CC------CCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 151 ---------Q--QLAS---SK------TPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 151 ---------~--~~~~---~~------~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
. +..+ +. .+......-+. .+.....-.|+... .++++-|||+|...++.++.+...
T Consensus 228 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~ 304 (824)
T PF02399_consen 228 RSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS---NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCAR 304 (824)
T ss_pred cccCcHHHHHHhCCcccccccCCCcCCCCccccccccc---cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh
Confidence 0 0000 00 00111111111 22333444444433 567888999999999999999887
Q ss_pred hhccCCceEEeccCCCCC
Q 026925 210 LAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 210 ~~~~~g~~~~~lh~~~~~ 227 (230)
. +.++..+.|+-+.
T Consensus 305 ~----~~~Vl~l~s~~~~ 318 (824)
T PF02399_consen 305 F----TKKVLVLNSTDKL 318 (824)
T ss_pred c----CCeEEEEcCCCCc
Confidence 7 8888888776543
No 134
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.73 E-value=0.00049 Score=64.46 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hhc-----CCcEEEEcChHHHHHHhhCCcccC
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~-----~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
||++|..-+.. +.+.++.++ ++++++.+|+....+.+..+ .+. +++++++|.+.++.-- .-+.-
T Consensus 424 lvvvplst~~~-W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---~~L~~ 495 (1373)
T KOG0384|consen 424 LVVVPLSTITA-WEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---AELSK 495 (1373)
T ss_pred EEEeehhhhHH-HHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH---hhhcc
Confidence 78999777665 356666665 57888889887766555544 223 5899999999865422 12223
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHHH
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEEL 124 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~~ 124 (230)
-...++++||||+|-+.. ..+...+..+..+.++++ +.| +-+++.++
T Consensus 496 i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~~rlli-tgTPlQNsikEL 543 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLKNDE--SKLYESLNQFKMNHRLLI-TGTPLQNSLKEL 543 (1373)
T ss_pred CCcceeeecHHhhcCchH--HHHHHHHHHhcccceeee-cCCCccccHHHH
Confidence 446799999999997542 222233555554555444 444 33344443
No 135
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.67 E-value=0.00032 Score=63.49 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 171 PDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 171 ~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+++.+..-++. ..+.+++|||+|++.|+.++..|.+. |+++..+||++++.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 479 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTL 479 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHH
Confidence 34566666666653 35679999999999999999999988 99999999998863
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.65 E-value=0.00013 Score=51.65 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 163 HLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+++... +..|...+..++.+. ..+++||||++...++.++..|.+. +.++..+||+++.+
T Consensus 3 ~~~~~~~-~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~ 65 (131)
T cd00079 3 KQYVLPV-EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP----GIKVAALHGDGSQE 65 (131)
T ss_pred EEEEEEC-CHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc----CCcEEEEECCCCHH
Confidence 3444443 337888888888866 3789999999999999999999986 89999999998754
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.64 E-value=0.00033 Score=62.85 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.5
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||+|+++..|...++. ..-.+...+++||||||++.+
T Consensus 181 ~~AdivItNHalL~~~~~~-~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRD-KWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhh-hcCCCCCCCEEEEeCCcchHH
Confidence 5579999999988876655 323456689999999999975
No 138
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.57 E-value=3.6e-05 Score=70.70 Aligned_cols=192 Identities=17% Similarity=0.145 Sum_probs=108.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-CcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-~~~~~~~l~~l 80 (230)
+++++|.++|+..-.+...+... .||+++.-++|+...+ ...+ ..++++|+||++.....++- +.-.+.++..+
T Consensus 976 vvyIap~kalvker~~Dw~~r~~-~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~i 1050 (1230)
T KOG0952|consen 976 VVYIAPDKALVKERSDDWSKRDE-LPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTRKYVQSVSLI 1050 (1230)
T ss_pred EEEEcCCchhhcccccchhhhcc-cCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccchhhhccccce
Confidence 68999999999887777776643 3488999988887654 3333 56899999999977766631 33347899999
Q ss_pred EEeccccccccccHHHHHHHHHhC-------CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQL 153 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-------~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 153 (230)
|+||.|. +..++++.++.+.... ++..+.+++|.-+. +...++++.-..+. ....+.. ..++.....
T Consensus 1051 v~de~hl-lg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf~~sv--rpvp~~~~i- 1124 (1230)
T KOG0952|consen 1051 VLDEIHL-LGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM-YNFRPSV--RPVPLEVHI- 1124 (1230)
T ss_pred eeccccc-ccCCCcceEEEEeeccccCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCCCccc--ccCCceEee-
Confidence 9999995 4555566554443332 33456666543332 23344433211111 1110000 000000000
Q ss_pred ccCCCCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 154 ASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+..|. +++ +. .-..+..--...++.+ +.+|++||+++++....-+..|...
T Consensus 1125 --~gfp~--~~~-cp-rm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~ 1176 (1230)
T KOG0952|consen 1125 --DGFPG--QHY-CP-RMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIAS 1176 (1230)
T ss_pred --cCCCc--hhc-ch-hhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhh
Confidence 01111 111 11 1123333344455544 6689999999988766655555544
No 139
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.44 E-value=0.00084 Score=60.98 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 172 DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 172 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..++..+...++. ..+.+++|||+|++.|+.++..|.+. |+++..+||++++.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~ 483 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTL 483 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHH
Confidence 3456666666653 25679999999999999999999988 99999999998863
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.42 E-value=0.016 Score=50.00 Aligned_cols=212 Identities=13% Similarity=0.115 Sum_probs=116.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
.||+||..-+ .-+.+.+++|....- .+..+.++.+..... .....|.|.+.+.+..+- ..+.-...+.+|
T Consensus 244 lliVcPAsvr-ftWa~al~r~lps~~--pi~vv~~~~D~~~~~----~t~~~v~ivSye~ls~l~---~~l~~~~~~vvI 313 (689)
T KOG1000|consen 244 LLIVCPASVR-FTWAKALNRFLPSIH--PIFVVDKSSDPLPDV----CTSNTVAIVSYEQLSLLH---DILKKEKYRVVI 313 (689)
T ss_pred EEEEecHHHh-HHHHHHHHHhccccc--ceEEEecccCCcccc----ccCCeEEEEEHHHHHHHH---HHHhcccceEEE
Confidence 3788896543 445666777665432 244444544332211 233568888887754433 234445688999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecC-------------------chHHHHHHHhccCCCe-EEEEeccC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-------------------TEAVEELSKAGLRNPV-RVEVRAES 141 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~-------------------~~~~~~~~~~~~~~~~-~i~~~~~~ 141 (230)
+||.|++-+.. ....+.++.-+....++|++|.|. -++-.++...|...-. -+.....+
T Consensus 314 ~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg 392 (689)
T KOG1000|consen 314 FDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKG 392 (689)
T ss_pred Eechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCC
Confidence 99999775443 333555555555566778888873 2233444444443111 11111111
Q ss_pred ccccccc-----------chhccccCCCCccceEEEEEcCC-------------------------------------CC
Q 026925 142 KSHHVSA-----------SSQQLASSKTPLGLHLEYLECEP-------------------------------------DE 173 (230)
Q Consensus 142 ~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-------------------------------------~~ 173 (230)
-.+.... +.+.-.-...|...+..++.+.. .-
T Consensus 393 ~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgia 472 (689)
T KOG1000|consen 393 CTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIA 472 (689)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhccc
Confidence 0000000 00111112334444444444442 12
Q ss_pred cHHHHHHHHHh------CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 174 KPSQLVDLLIK------NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 174 k~~~l~~ll~~------~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
|....++.|.. .+..+.+|||--....+.+..++.+. ++...-+-|..+..
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r----~vg~IRIDGst~s~ 529 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR----KVGSIRIDGSTPSH 529 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc----CCCeEEecCCCCch
Confidence 23333333332 36679999999999999999999988 89888888887753
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.40 E-value=0.0011 Score=61.61 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+||+|+...-|...+.. .. .+...+++||||||++.+
T Consensus 413 ~AdivItNHall~~~~~~-~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 413 TARLLITNHAYFLTRVQD-DK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred hCCEEEEchHHHHHHHhh-cc-CCCCCCEEEEECcchhHH
Confidence 479999999877776644 22 256789999999999964
No 142
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.36 E-value=0.0029 Score=54.26 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=86.6
Q ss_pred EcChHHHHHHhh-------CCcccCCcccEEEEeccccc-ccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 57 GTPGRLYDIMER-------MDVLDFRNLEILVLDEADRL-LDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 57 ~TP~~l~~~l~~-------~~~~~~~~l~~lVvDEad~l-~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
+||..+++++.. ...-.+.+.+.+|+||||-= ++. -....++.+....| +..++.+|||+. ....+.
T Consensus 133 ~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~---a~Kfq~ 208 (699)
T KOG0925|consen 133 TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLD---AEKFQR 208 (699)
T ss_pred CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccc---hHHHHH
Confidence 456666554422 01223788999999999953 111 13344455555554 888999999976 345566
Q ss_pred ccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHH----HhCCCCeEEEEcCchhHHHHH
Q 026925 128 GLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLL----IKNKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll----~~~~~~~~lIF~~t~~~~~~l 203 (230)
|+.++-.+.+... ..+.-+|..-.+.+..+..++.+ .....+-+++|-...++.+..
T Consensus 209 yf~n~Pll~vpg~-------------------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~a 269 (699)
T KOG0925|consen 209 YFGNAPLLAVPGT-------------------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDA 269 (699)
T ss_pred HhCCCCeeecCCC-------------------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHH
Confidence 7777776665432 12232343334444444444333 234567899999999999888
Q ss_pred HHHhhhhhc-----cCCceEEeccC
Q 026925 204 GVVLPRLAV-----LKSLSLIPLHG 223 (230)
Q Consensus 204 ~~~L~~~~~-----~~g~~~~~lh~ 223 (230)
++.+..... ....++.++|.
T Consensus 270 C~~i~re~~~L~~~~g~l~v~PLyP 294 (699)
T KOG0925|consen 270 CRKISREVDNLGPQVGPLKVVPLYP 294 (699)
T ss_pred HHHHHHHHHhhccccCCceEEecCc
Confidence 888774311 12346777773
No 143
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.36 E-value=0.0039 Score=55.37 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=96.9
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~ 129 (230)
--|=++|-+.|++-+. ...++.+...+||||||-=- .-. ....+..|.+. ++...+++.|||+.. +.+.. |+
T Consensus 356 TvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~DA--ekFS~-fF 429 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATMDA--EKFSA-FF 429 (902)
T ss_pred eeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcceEEeeccccCH--HHHHH-hc
Confidence 3467899999877665 45789999999999999521 111 22333444443 467889999999874 45544 55
Q ss_pred CCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHH
Q 026925 130 RNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGV 205 (230)
Q Consensus 130 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~ 205 (230)
.+.-...+... .-.+..+|...++.+=+++....+. ..+.+-+|||-.-+++.+....
T Consensus 430 DdapIF~iPGR------------------RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e 491 (902)
T KOG0923|consen 430 DDAPIFRIPGR------------------RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKE 491 (902)
T ss_pred cCCcEEeccCc------------------ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHH
Confidence 54444333222 2234445566666555544433333 2355789999999988888777
Q ss_pred HhhhhhccCC-----ceEEeccCCCCCC
Q 026925 206 VLPRLAVLKS-----LSLIPLHGKMKQV 228 (230)
Q Consensus 206 ~L~~~~~~~g-----~~~~~lh~~~~~~ 228 (230)
.|.+....-| +-+.++|+.||++
T Consensus 492 ~l~~~~~~LGski~eliv~PiYaNLPse 519 (902)
T KOG0923|consen 492 NLKERCRRLGSKIRELIVLPIYANLPSE 519 (902)
T ss_pred HHHHHHHHhccccceEEEeeccccCChH
Confidence 7766532223 3578899999875
No 144
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.29 E-value=0.0024 Score=51.36 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=63.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH-HHhhC----Ccc-cCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERM----DVL-DFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~-~l~~~----~~~-~~~ 75 (230)
|=|++.+.-||..=+.++..+...+ |+++....++.+.++....+ .+||+.+|...+.- +++.. ... ..+
T Consensus 121 V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r 196 (266)
T PF07517_consen 121 VHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQR 196 (266)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SS
T ss_pred cEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccC
Confidence 4578999999999999999999998 99999999988866555444 36899999998754 44431 111 157
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.++||||+|.++
T Consensus 197 ~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 197 GFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSEEEECTHHHHT
T ss_pred CCCEEEEeccceEE
Confidence 88999999999986
No 145
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0026 Score=57.61 Aligned_cols=140 Identities=19% Similarity=0.154 Sum_probs=82.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc--cHHHHHHHH---HhCCC------CCcEEEEeecCc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG--FQKQISYII---SRLPK------LRRTGLFSATQT 118 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~--~~~~~~~i~---~~l~~------~~q~i~~SAt~~ 118 (230)
....|-++|-+-|++-+.+ .|.+.....||+||||-=.=.. ...-+.+|+ +...+ ....|++|||+.
T Consensus 348 e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 348 EDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred CCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 3456999999999888874 6888999999999999632110 122223332 22222 345899999974
Q ss_pred hHHHHHH--HhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHH---HhCCCCeEEE
Q 026925 119 EAVEELS--KAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLL---IKNKSKKIII 192 (230)
Q Consensus 119 ~~~~~~~--~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll---~~~~~~~~lI 192 (230)
- ..+. ++.|+.|- .+.+... ..|-.| |+--..+...-.++....+ ++.+.+-+||
T Consensus 426 V--sDFtenk~LFpi~pPlikVdAR----------------QfPVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 426 V--SDFTENKRLFPIPPPLIKVDAR----------------QFPVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILV 486 (1172)
T ss_pred e--cccccCceecCCCCceeeeecc----------------cCceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEE
Confidence 2 2222 22333222 3444332 222222 2211112222223333333 2457789999
Q ss_pred EcCchhHHHHHHHHhhhh
Q 026925 193 YFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 193 F~~t~~~~~~l~~~L~~~ 210 (230)
|+.-+++++.++..|++.
T Consensus 487 FvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred EEeChHHHHHHHHHHHhh
Confidence 999999999999999987
No 146
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.05 E-value=0.00081 Score=62.44 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=65.8
Q ss_pred cEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--C
Q 026925 109 RTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--K 186 (230)
Q Consensus 109 q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 186 (230)
++.++|.|......++...|--+.+. +++.. +........ .+.....+|...+...+... .
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~--IPTnr--------------P~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~ 597 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVV--IPTNK--------------PIVRKDMDD-LVYKTRREKYNAIVLKVEELQKK 597 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEE--CCCCC--------------CcceecCCC-eEecCHHHHHHHHHHHHHHHhhC
Confidence 56788888877666766554323222 22220 112222222 23345667999999988643 7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
++|+||||+|++.++.++..|... |++..++|+.-
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~----gI~h~vLnakq 632 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAK----RIAHNVLNAKQ 632 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc----CCCceeecCCH
Confidence 789999999999999999999998 99999999853
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.95 E-value=0.0023 Score=60.11 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=68.9
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH-HHHHHH-hcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA-DVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~l~-~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||+|||.-+.+. .-+++++ +|++++...+|.-.... ....+. .+-+||.|++...+.+-+ ..|..++++++
T Consensus 669 LIVVpTsviLnW-EMElKRw---cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrkrWqyL 741 (1958)
T KOG0391|consen 669 LIVVPTSVILNW-EMELKRW---CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRKRWQYL 741 (1958)
T ss_pred eEEeechhhhhh-hHHHhhh---CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH---HHHHhhcccee
Confidence 799999887653 4445555 56789988888543221 111221 134799999998876655 45778899999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
|+||||.+-++. ...++.++..- ..+.++++.|
T Consensus 742 vLDEaqnIKnfk-sqrWQAllnfn--sqrRLLLtgT 774 (1958)
T KOG0391|consen 742 VLDEAQNIKNFK-SQRWQALLNFN--SQRRLLLTGT 774 (1958)
T ss_pred ehhhhhhhcchh-HHHHHHHhccc--hhheeeecCC
Confidence 999999997764 34455555433 3445666666
No 148
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.95 E-value=0.0061 Score=57.26 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+||+|+...-+...+.. ....+.+-+++||||||++.+
T Consensus 416 ~AdivItNHa~L~~~~~~-~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 416 QAQILITNHAYLITRLVD-NPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCEEEecHHHHHHHhhc-ccccCCCCCEEEEECcchHHH
Confidence 478999999877665543 222334457999999999975
No 149
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.82 E-value=0.01 Score=56.32 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=69.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccC-CcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDF-RNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~-~~l~~l 80 (230)
+++|+-.++|-.|+.+.+..+..... ... ...+..+-.+.+....-.|+|+|-++|...+........ .+=-.+
T Consensus 306 v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 306 VLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEE
Confidence 68999999999999999999976542 111 222333333344323348999999999998876211112 222368
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
|+||||+- .++..-..+...++ +...++||.|.-
T Consensus 381 I~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 381 IIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred EEechhhc---cccHHHHHHHHHhc-cceEEEeeCCcc
Confidence 89999985 34443334444443 488899999963
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=96.67 E-value=0.03 Score=51.22 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=78.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch-HHHHHHHH-----hcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-KADVKKIE-----EEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~l~-----~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
+||++|.. |+.-+++++.++.... .+....+++.... ......+. ....-|++-+.+.+.+..+. +...
T Consensus 301 ~lVV~P~s-Lv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 301 PLVVAPSS-LVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred cEEEccHH-HHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 58999965 6666788888887542 5666666666552 11111111 12346788888888777654 5678
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC-chHHHHHHHh-ccCCCeEEEE
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSKA-GLRNPVRVEV 137 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~-~~~~~~~~~~-~~~~~~~i~~ 137 (230)
.++++|.||.|.+-+. ...+...+..+.-. +.+++|.|. -+++.++... .+-+|..+..
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs 436 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGS 436 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccc
Confidence 8899999999998544 23334445556434 445567774 4455554443 3456665544
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.63 E-value=0.0031 Score=59.05 Aligned_cols=71 Identities=23% Similarity=0.068 Sum_probs=46.2
Q ss_pred CcEEEEcChHHHHHHhh--CCcccCC--c--ccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHH
Q 026925 52 ANLLIGTPGRLYDIMER--MDVLDFR--N--LEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~--~~~~~~~--~--l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~ 123 (230)
..++|||+..++..... .+...+. . =+.+||||+|.. +......+.+++.-.. -...++++|||+|+.+..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 68999999999887632 1222221 1 257999999965 3333344555554332 257889999999987655
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.60 E-value=0.011 Score=55.89 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+||+ .|+-.+..++.+++.. +++....|+.......+.- -++++|+|++.+-+..-+.. +.-.+..++|
T Consensus 1034 SLIVCPs-TLtGHW~~E~~kf~pf---L~v~~yvg~p~~r~~lR~q-~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1034 SLIVCPS-TLTGHWKSEVKKFFPF---LKVLQYVGPPAERRELRDQ-YKNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred eEEECCc-hhhhHHHHHHHHhcch---hhhhhhcCChHHHHHHHhh-ccccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 6899995 5888888888887644 5666666654332222221 25689999999887644432 2234567999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEE 123 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~ 123 (230)
+||=|.+-+. ...+...++.+..+++.|+ |.| +-+++.+
T Consensus 1106 LDEGHVikN~--ktkl~kavkqL~a~hRLIL-SGTPIQNnvle 1145 (1549)
T KOG0392|consen 1106 LDEGHVIKNS--KTKLTKAVKQLRANHRLIL-SGTPIQNNVLE 1145 (1549)
T ss_pred ecCcceecch--HHHHHHHHHHHhhcceEEe-eCCCcccCHHH
Confidence 9999977544 4445555677766666666 666 3343333
No 153
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.25 E-value=0.0054 Score=54.81 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=53.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH----HHhh---CCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD----IMER---MDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~----~l~~---~~~~~~ 74 (230)
.|||||-+- .-|+++++.+-.... .++|...+|....+-..+.+ ..+||+|+|..-+.. -.+. +..+.-
T Consensus 386 TLII~PaSl-i~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 386 TLIICPASL-IHQWEAEVARRLEQN-ALSVYLYHGPNKREISAKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred eEEeCcHHH-HHHHHHHHHHHHhhc-ceEEEEecCCccccCCHHHH--hhcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 489999664 556666666555554 68988888876433333333 679999999976544 1111 011112
Q ss_pred CcccEEEEeccccccc
Q 026925 75 RNLEILVLDEADRLLD 90 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~ 90 (230)
-....+|+||||.+-+
T Consensus 462 I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 462 IAWSRVILDEAHNIRN 477 (901)
T ss_pred hhHHHhhhhhhhhhcc
Confidence 2346799999998754
No 154
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.17 E-value=0.015 Score=47.27 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=70.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccC-----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDF----- 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~----- 74 (230)
+|-++.+.+|-....+.++.++.. .+.+..+..- +.. ... .-+-.|+++|...|..--... ..-++
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~-~~~-~~~---~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKF-KYG-DII---RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC--cccceechhh-ccC-cCC---CCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 577888999999989999988754 3444433221 000 001 223459999998876654310 11111
Q ss_pred ----CcccEEEEeccccccccc--------cHHHHHHHHHhCCCCCcEEEEeecCchHHHHH
Q 026925 75 ----RNLEILVLDEADRLLDMG--------FQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (230)
Q Consensus 75 ----~~l~~lVvDEad~l~~~~--------~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~ 124 (230)
..=..||+||+|..-+.. -...+..+.+.+|+ .+++.+|||--.+.+.+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRNM 227 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCcee
Confidence 112489999999986543 23456667777864 45999999976554444
No 155
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.97 E-value=0.039 Score=51.30 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=52.2
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..|++.||.-+..-+-. +.++++.+..+||||||++....-..-+-++.+.-.+..-+.+|||...
T Consensus 8 ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 45999999887666655 8899999999999999999766545555556655566778999999865
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.65 E-value=0.017 Score=51.96 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=66.0
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH--------HhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI--------EEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l--------~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
||++|...|- ++...+.+++|++++.-.-|+.+........ ...+.||+|+|.+.+.. +. +.+.-
T Consensus 621 LVVtpaStL~----NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--De-ky~qk 693 (1185)
T KOG0388|consen 621 LVVTPASTLH----NWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DE-KYLQK 693 (1185)
T ss_pred EEeehHHHHh----HHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hH-HHHHh
Confidence 7888977764 4555666667788887766665433222221 13578999999987532 11 22333
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
-..++.|+|||..+-+.. ...++.++++-.+++ ++++.|.
T Consensus 694 vKWQYMILDEAQAIKSSs-S~RWKtLLsF~cRNR--LLLTGTP 733 (1185)
T KOG0388|consen 694 VKWQYMILDEAQAIKSSS-SSRWKTLLSFKCRNR--LLLTGTP 733 (1185)
T ss_pred hhhhheehhHHHHhhhhh-hhHHHHHhhhhccce--eeecCCc
Confidence 456799999999876543 455666666554443 5666664
No 157
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.60 E-value=0.096 Score=50.75 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=60.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+-+..+.+.+.++ +|+.++..++|+.+..+... .+.+++.+|+|+|- .+. ..+++.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie--rGIDIP~v 880 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 880 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh--cccccccC
Confidence 4789999999888877777765 45678889999876654333 44568899999996 443 57899999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999875
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.42 E-value=0.059 Score=46.69 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=56.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCccc-------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLD------- 73 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~------- 73 (230)
.||++|+-+|. |+.+++.++.+. ..++...+|. ......+.+ .++|++.+|..-+-...+. ...++
T Consensus 234 tLVvaP~VAlm-QW~nEI~~~T~g--slkv~~YhG~-~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 234 TLVVAPTVALM-QWKNEIERHTSG--SLKVYIYHGA-KRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred eeEEccHHHHH-HHHHHHHHhccC--ceEEEEEecc-cccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 58999999874 678888888764 5676666553 333444555 5799999999877665543 11111
Q ss_pred ----CCcc--cEEEEeccccccc
Q 026925 74 ----FRNL--EILVLDEADRLLD 90 (230)
Q Consensus 74 ----~~~l--~~lVvDEad~l~~ 90 (230)
+.++ -.+|+||||.+-+
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred ccchhhhceeeeeehhhhccccc
Confidence 3333 4599999999875
No 159
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.27 E-value=0.14 Score=48.52 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=61.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+-+..++..++++ +|++++..++|+.+..+... .+.+++.+|+|+|- .+. ..+++.++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie--~GIDIp~v 731 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE--TGIDIPNA 731 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cccccccC
Confidence 4789999999888888887775 35789999999876554443 44567899999996 444 57899999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|++.+|+.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999874
No 160
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.25 E-value=0.62 Score=42.25 Aligned_cols=149 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred cEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-c-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC
Q 026925 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-G-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 53 ~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
.|=++|-+-|++-.- ..-.+.+...+|+||||-=.-. . ....++..+.. +.+..+|..|||+.. ..+.+-|-.
T Consensus 447 ~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a--~kf~nfFgn 521 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDA--QKFSNFFGN 521 (1042)
T ss_pred eEEEeccchHHHHHh--hhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccH--HHHHHHhCC
Confidence 466778877655322 2235778899999999964211 1 12222223332 347789999999874 566665443
Q ss_pred CCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh-------CCCCeEEEEcCchhHHHHH
Q 026925 131 NPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK-------NKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-------~~~~~~lIF~~t~~~~~~l 203 (230)
.|.. .+... ..|-.+-+ .. ..--+++...+++ ...+.+|||..-++..+-.
T Consensus 522 ~p~f-~IpGR----------------TyPV~~~~--~k---~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 522 CPQF-TIPGR----------------TYPVEIMY--TK---TPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred Ccee-eecCC----------------ccceEEEe--cc---CchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 5543 32222 12222221 11 1112333333331 2446899999988776665
Q ss_pred HHHhhhh----hccC--CceEEeccCCCCCC
Q 026925 204 GVVLPRL----AVLK--SLSLIPLHGKMKQV 228 (230)
Q Consensus 204 ~~~L~~~----~~~~--g~~~~~lh~~~~~~ 228 (230)
+..++.. ...+ +..+.++.+.||++
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 5555443 3333 66788888888764
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=94.65 E-value=0.25 Score=46.69 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred eEEEeCChhhHHHHHHHHH--H----hhhhCCC--ceEEEEEcCc-------chHHHHHHHHhc------CCcEEEEcCh
Q 026925 2 GMIISPTRELSSQIYHVAQ--P----FISTLPD--VKSVLLVGGV-------EVKADVKKIEEE------GANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~--~----l~~~~~~--~~v~~~~~~~-------~~~~~~~~l~~~------~~~Iiv~TP~ 60 (230)
.||+||+.+.-..+.+-+. . |...+.+ ++...+.++. .....+..+... ..+|+|+|-+
T Consensus 92 fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niq 171 (986)
T PRK15483 92 FIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAG 171 (986)
T ss_pred EEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehH
Confidence 5899999888777766554 1 1111212 4444455433 223444444333 4799999999
Q ss_pred HHHHHHh----------h-C-Cccc-CCcc-cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 61 RLYDIME----------R-M-DVLD-FRNL-EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 61 ~l~~~l~----------~-~-~~~~-~~~l-~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
.|..-.- . . .+++ ++.. -.+|+||.|++-..+ .....| ..+.+.. ++.+|||+++
T Consensus 172 a~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 172 MLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 8866211 0 0 0111 2222 258999999996532 233444 4454333 5669999986
No 162
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.90 E-value=1.7 Score=39.83 Aligned_cols=112 Identities=12% Similarity=0.202 Sum_probs=71.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|+++|+.-|..+...+... ++.+..++++.+..+... .+..++.+|+|||- .+. .++++.+++
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~--rGfDiP~v~ 512 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLPEVS 512 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc--CCeeeCCCc
Confidence 689999999999888888764 677888888765443333 34457799999983 443 578999999
Q ss_pred EEEEeccccccccc-cHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHH
Q 026925 79 ILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 79 ~lVvDEad~l~~~~-~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~ 125 (230)
++|+-++|..--.. ....+.++-+.-+ .....+++--..+..+...+
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHH
Confidence 99999998752221 2223333322221 23456666555655444433
No 163
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=93.89 E-value=0.092 Score=49.05 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=51.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+||+.-|.+. ...+..++ |.+......|....... ...+..++++|+++|.+.+.. +. ..+.--+..++|
T Consensus 448 LvivPlstL~NW-~~Ef~kWa---PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk-~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 448 LIIVPLSTLVNW-SSEFPKWA---PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DK-ALLSKISWKYMI 520 (1157)
T ss_pred EEeccccccCCc-hhhccccc---cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CH-HHHhccCCccee
Confidence 799999999875 45555554 34555555554332211 123334789999999987644 11 223345567999
Q ss_pred Eeccccccc
Q 026925 82 LDEADRLLD 90 (230)
Q Consensus 82 vDEad~l~~ 90 (230)
|||-|+|-+
T Consensus 521 IDEGHRmKN 529 (1157)
T KOG0386|consen 521 IDEGHRMKN 529 (1157)
T ss_pred ecccccccc
Confidence 999999954
No 164
>COG4889 Predicted helicase [General function prediction only]
Probab=93.50 E-value=0.17 Score=47.01 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=56.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH----------------HH--------HhcCCcEEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK----------------KI--------EEEGANLLIG 57 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~----------------~l--------~~~~~~Iiv~ 57 (230)
+|.|||+-.|..|..+.+..-.. . +++...++++.......+ .+ ...+--|+++
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 68999999999998777765432 2 567776665433211100 00 1134578999
Q ss_pred cChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 58 TPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 58 TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
|.+++...-.. ...-+..++++|-||||+...
T Consensus 287 TYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 287 TYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccchHHHHHH-HHcCCCCccEEEecchhcccc
Confidence 99987665443 334477889999999999864
No 165
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=93.40 E-value=0.29 Score=43.09 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=99.4
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
++--|.|.||.++++.+... ++.+-.++|.......-+ ...++.+=+|-|+. .- -...+.-|+
T Consensus 219 vycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~---~~~a~hvScTVEM~----sv-----~~~yeVAVi 281 (700)
T KOG0953|consen 219 VYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN---GNPAQHVSCTVEMV----SV-----NTPYEVAVI 281 (700)
T ss_pred eecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC---CCcccceEEEEEEe----ec-----CCceEEEEe
Confidence 55679999999999999887 667777777433211110 12366777777753 11 133568999
Q ss_pred eccccccccccHHHHHH-HHHhCCCCCcEEEEeecCchHHHHHHHhccC---CCeEEEEeccCcccccccchhccccCCC
Q 026925 83 DEADRLLDMGFQKQISY-IISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~-i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||+..|-+.+.+-.+.+ ++.....+.+.++= +.+..+.++.+. +.+.+.
T Consensus 282 DEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~i~k~TGd~vev~---------------------- 334 (700)
T KOG0953|consen 282 DEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRKILKMTGDDVEVR---------------------- 334 (700)
T ss_pred hhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHHHHhhcCCeeEEE----------------------
Confidence 99998887654444443 33333344444442 233334433322 222221
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.|-...+-.-.+.+..-++....+-|+| |=|++..-.+-..+.+.. +.+++++.|++|++
T Consensus 335 ------~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g---~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 335 ------EYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAG---NHKCAVIYGSLPPE 394 (700)
T ss_pred ------eecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhc---CcceEEEecCCCCc
Confidence 1222222222234455555555555555 446777888888888872 45699999999985
No 166
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.36 E-value=0.45 Score=45.52 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=61.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|+-+|.|--+=..++...++.+ .|..+++..+|.-...+..+ .+.++.+||+|+|- .+. ..++..+.
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIE--tGIDIPnA 874 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIE--TGIDIPNA 874 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eee--cCcCCCCC
Confidence 4678888777777777777776 57889999999876554433 44568899999986 454 57999999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
.++|||-||++
T Consensus 875 NTiIIe~AD~f 885 (1139)
T COG1197 875 NTIIIERADKF 885 (1139)
T ss_pred ceEEEeccccc
Confidence 99999999987
No 167
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.15 E-value=1.3 Score=40.42 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred CeEEEeCChhh-----HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTREL-----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eL-----a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
+++|++|+.+- .......++.+...+++.++..++|+.+..+... .+.+++.+|+|+|. .+. ..+
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gv 522 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE--VGV 522 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee--cCc
Confidence 46888987532 1222233334433345789999999876554433 34457899999996 333 568
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
++.+++++|+..++..
T Consensus 523 DiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 523 DVPNATVMVIEDAERF 538 (630)
T ss_pred ccCCCcEEEEeCCCcC
Confidence 8999999999888864
No 168
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.08 E-value=0.34 Score=44.32 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=56.6
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
||++|+-.+ .|+...+.+....- .+.+...+| ...+...+ .++||+++||..+.. ..+..-..-.+|+
T Consensus 193 Livcp~s~~-~qW~~elek~~~~~-~l~v~v~~g---r~kd~~el--~~~dVVltTy~il~~-----~~l~~i~w~Riil 260 (674)
T KOG1001|consen 193 LIVCPTSLL-TQWKTELEKVTEED-KLSIYVYHG---RTKDKSEL--NSYDVVLTTYDILKN-----SPLVKIKWLRIVL 260 (674)
T ss_pred eEecchHHH-HHHHHHHhccCCcc-ceEEEEecc---cccccchh--cCCceEEeeHHHhhc-----ccccceeEEEEEe
Confidence 678887655 55566666665543 566666666 12222232 678999999986652 1122233457999
Q ss_pred eccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 83 DEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
||||.+....-. .......+...++.++ ++|
T Consensus 261 dea~~ikn~~tq--~~~a~~~L~a~~RWcL-tgt 291 (674)
T KOG1001|consen 261 DEAHTIKNKDTQ--IFKAVCQLDAKYRWCL-TGT 291 (674)
T ss_pred ccccccCCcchH--hhhhheeeccceeeee-cCC
Confidence 999988655322 2222333444555555 444
No 169
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.92 E-value=0.58 Score=40.38 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=53.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+...+... ++++..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~--rGiDip~v~ 325 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA--RGLHIPAVT 325 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh--cCCCccccC
Confidence 799999999998888777653 678889999876554443 34467899999995 333 568889999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 887443
No 170
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.74 E-value=0.068 Score=40.18 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=26.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCcc--cCCcccEEEEecccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVL--DFRNLEILVLDEADRLLDM 91 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~--~~~~l~~lVvDEad~l~~~ 91 (230)
..+||+|++..-|.+-.-. ..+ ...+-..+||||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~-~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIR-KSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHH-HHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHH-hhhccccccCcEEEEecccchHHH
Confidence 4589999999876654322 111 1234468999999998654
No 171
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.67 E-value=1.6 Score=40.23 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=54.9
Q ss_pred CeEEEeCChhh-----HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTREL-----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eL-----a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
+++|++|+.+= .......++.+...++++++..++|+.+..+... .+.+++.+|+|+|. .+. ..+
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gi 545 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE--VGV 545 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee--eCc
Confidence 47899996431 1122334444444455688999999876554444 34456789999996 333 568
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
++.+++++|+..++++
T Consensus 546 Dip~v~~VIi~~~~r~ 561 (681)
T PRK10917 546 DVPNATVMVIENAERF 561 (681)
T ss_pred ccCCCcEEEEeCCCCC
Confidence 8999999999998864
No 172
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.66 E-value=2.6 Score=38.96 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHhhhhCCCceEEEEEcCcc-----hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEec
Q 026925 10 ELSSQIYHVAQPFISTLPDVKSVLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (230)
Q Consensus 10 eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDE 84 (230)
.-++++...++++ +|+.++..++++.. .++....+.+++++|+|||.- +. +.+++.++.++++-.
T Consensus 437 ~G~e~~~e~l~~~---fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----ia--kG~d~p~v~lV~il~ 506 (679)
T PRK05580 437 PGTERLEEELAEL---FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM-----LA--KGHDFPNVTLVGVLD 506 (679)
T ss_pred ccHHHHHHHHHHh---CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh-----hc--cCCCCCCcCEEEEEc
Confidence 3445555555554 67788888887754 223345665678999999993 33 568899999999999
Q ss_pred ccccccc
Q 026925 85 ADRLLDM 91 (230)
Q Consensus 85 ad~l~~~ 91 (230)
+|..+..
T Consensus 507 aD~~l~~ 513 (679)
T PRK05580 507 ADLGLFS 513 (679)
T ss_pred CchhccC
Confidence 9988754
No 173
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.61 E-value=1 Score=40.67 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=55.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||+++|++.|.++++.+.+. ++.+..++|+.+..+... .+.++..+|||+|- .+. ..+++.++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip~V 326 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHIDGV 326 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCccCC
Confidence 3799999999999988888764 678899999877654443 34457799999995 343 46888999
Q ss_pred cEEEEecc
Q 026925 78 EILVLDEA 85 (230)
Q Consensus 78 ~~lVvDEa 85 (230)
+++|.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 98886443
No 174
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.56 E-value=2 Score=38.12 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEcCcch-----HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccc
Q 026925 13 SQIYHVAQPFISTLPDVKSVLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (230)
Q Consensus 13 ~q~~~~~~~l~~~~~~~~v~~~~~~~~~-----~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~ 87 (230)
+++...+.+ .+|+.++..++++... +.....+.+++++|+|||+- +. +.+++.++.+++|=.+|.
T Consensus 272 e~~~e~l~~---~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i~--kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 272 EQVEEELAK---LFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----IA--KGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHh---hCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----cc--cCCCCCcccEEEEEcCcc
Confidence 444445554 4677888888887543 33455665678999999994 33 568899999999999998
Q ss_pred cccc
Q 026925 88 LLDM 91 (230)
Q Consensus 88 l~~~ 91 (230)
.+..
T Consensus 342 ~l~~ 345 (505)
T TIGR00595 342 GLHS 345 (505)
T ss_pred cccC
Confidence 7653
No 175
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.42 E-value=0.74 Score=38.76 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=40.3
Q ss_pred CceEEEEEcCcchHHHHHHHHhcCC-----cEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc-------cHH
Q 026925 28 DVKSVLLVGGVEVKADVKKIEEEGA-----NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-------FQK 95 (230)
Q Consensus 28 ~~~v~~~~~~~~~~~~~~~l~~~~~-----~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~-------~~~ 95 (230)
+-++..+.+..+............. ...+..|..+...... ......+.+++||||||++...+ ...
T Consensus 31 ~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~ 109 (352)
T PF09848_consen 31 GKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPN 109 (352)
T ss_pred CCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHH
Confidence 3455555555444332322222221 3344555554443331 22446788999999999998732 245
Q ss_pred HHHHHHHh
Q 026925 96 QISYIISR 103 (230)
Q Consensus 96 ~~~~i~~~ 103 (230)
.+..+++.
T Consensus 110 ~L~~i~~~ 117 (352)
T PF09848_consen 110 QLDEIIKR 117 (352)
T ss_pred HHHHHHhc
Confidence 66666665
No 176
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=92.32 E-value=0.29 Score=37.87 Aligned_cols=41 Identities=32% Similarity=0.620 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEe
Q 026925 42 ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLD 83 (230)
Q Consensus 42 ~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvD 83 (230)
.+.+....+..++-||||.|+..++.. +.|.++.+.++|+|
T Consensus 187 ~~~k~~k~~~v~~gIgTp~Ri~~lv~~-~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 187 AQVKLLKKRVVHLGIGTPGRIKELVKQ-GGFNLSPLKFIILD 227 (271)
T ss_pred HHHHHHhhcceeEeecCcHHHHHHHHh-cCCCCCcceeEEee
Confidence 444445456688999999999999998 77999999999877
No 177
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.30 E-value=2.1 Score=37.86 Aligned_cols=110 Identities=15% Similarity=0.312 Sum_probs=80.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.+-|+-+|.++-+-+..+ |+++..++++...-+....+ ..+.+|++||- .+++ ..+++..+.
T Consensus 449 vLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR--EGLDiPEVs 516 (663)
T COG0556 449 VLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLPEVS 516 (663)
T ss_pred EEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh--ccCCCccee
Confidence 578888888888777766665 89999999998876665544 34779999993 3666 468999999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCchHHHHHHH
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~~~~~~~~ 126 (230)
++.|=+||. .||...-+.++..+. .+-++|+..-.+++.+.....
T Consensus 517 LVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 517 LVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAID 566 (663)
T ss_pred EEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHH
Confidence 999888886 466554444444442 356788888888877665443
No 178
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=91.87 E-value=0.25 Score=32.57 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..+++++||++-..+...+..|+.. |+++..+.||+..
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~----G~~v~~l~GG~~~ 87 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQN----GFKVKNLDGGYKT 87 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHC----CCCEEEecCCHHH
Confidence 4578999999988899999999887 8899999999853
No 179
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.52 E-value=1.3 Score=38.97 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=54.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.++...+++. ++++..++++.+..+... .+.++..+|||+|-. +. ..+++.+++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~~--~GID~p~V~ 296 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----FG--MGINKPDVR 296 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCCcccce
Confidence 589999999999988888764 678888999877654443 344678999999963 22 468888999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-..
T Consensus 297 ~VI~~~~ 303 (470)
T TIGR00614 297 FVIHYSL 303 (470)
T ss_pred EEEEeCC
Confidence 9885544
No 180
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.47 E-value=1 Score=38.94 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..+...++.. ++++..++|+.+..+... .+.++..+|||+|- .+. ..+++.+++
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~--~GiDip~v~ 315 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA--RGIDIDDVS 315 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCccCCCCC
Confidence 699999999999988888763 678888999877655544 34457899999994 332 567889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 9874
No 181
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.36 E-value=0.24 Score=45.70 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=29.3
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccC-CcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDF-RNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~-~~l~~lVvDEad~l~~ 90 (230)
..+||+|+...-|..-+.. .+.+.. -+.+++||||||++.+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 5689999999987765532 122222 2578899999999975
No 182
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.34 E-value=0.21 Score=47.59 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||+|+...-|...+.. +.-.+...+++||||||++.+
T Consensus 430 ~~AdivItNHalLl~dl~~-~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTS-EEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhh-hcccCCCCCeEEEECCchHHH
Confidence 3479999999987776643 222345679999999999974
No 183
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=91.22 E-value=0.19 Score=41.13 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=27.8
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||||++..-|.+-... .-...+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3489999999887654422 112233 468999999999864
No 184
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=91.22 E-value=0.19 Score=41.13 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=27.8
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||||++..-|.+-... .-...+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3489999999887654422 112233 468999999999864
No 185
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.02 E-value=1.6 Score=38.90 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=54.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++.|+..|..+...+... ++++..++|+.+..+....+ .++..+|+|+|--- . ..+++.++.
T Consensus 276 ~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-----a--RGiDi~~v~ 343 (513)
T COG0513 276 VIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-----A--RGLDIPDVS 343 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-----h--ccCCccccc
Confidence 799999999999977666664 68999999998876555544 45789999999743 2 578888888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 344 ~Vi 346 (513)
T COG0513 344 HVI 346 (513)
T ss_pred eeE
Confidence 885
No 186
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.93 E-value=1.9 Score=37.74 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=52.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..+...+.+. ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 248 ~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~--rGiDip~v~ 315 (456)
T PRK10590 248 VLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA--RGLDIEELP 315 (456)
T ss_pred EEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh--cCCCcccCC
Confidence 699999999999888777653 678888999877654443 34456789999995 333 468888898
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8873
No 187
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=90.57 E-value=0.41 Score=32.11 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.++++++|.+-.++...+..|.+. |+++..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~----G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER----GYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----CceeEEeCCcHHh
Confidence 5579999999988899999999988 9999999999853
No 188
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=90.53 E-value=3.9 Score=28.25 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=51.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+.++.+.+++. +..+..+.|+.+..+.. ..+.++...|+++|.. +. ..+++...+
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~--~G~d~~~~~ 98 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IA--RGIDLPNVS 98 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hh--cCcChhhCC
Confidence 589999999999988888772 56778888876543332 2344456789999863 22 456777888
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|+.+.+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88877764
No 189
>PTZ00110 helicase; Provisional
Probab=90.41 E-value=1.9 Score=38.66 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=52.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|+|+.-|..+...++.. ++.+..++|+.+..+... .+.++...|||+|- .+. ..+++.+++
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~--rGIDi~~v~ 447 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS--RGLDVKDVK 447 (545)
T ss_pred EEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh--cCCCcccCC
Confidence 799999999999888877642 567888899877665443 44456789999996 333 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 9885
No 190
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=90.26 E-value=0.79 Score=30.04 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.8
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+..++++||++-..+..++..|... |++ +..+.||+.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~----G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLREL----GFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHc----CCCceEEecCCHH
Confidence 346689999999999999999999988 887 888898875
No 191
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.95 E-value=2 Score=37.59 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..++..+... ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~--rGiDi~~v~ 312 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA--RGLDIKALE 312 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc--cccchhcCC
Confidence 689999999999988887664 678889999877665444 33356789999995 333 468888999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-+.
T Consensus 313 ~VI~~d~ 319 (460)
T PRK11776 313 AVINYEL 319 (460)
T ss_pred eEEEecC
Confidence 8885443
No 192
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.90 E-value=1.9 Score=37.97 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|++.++.-|.-+.+.+.++ ++++..++|+...++....| ..+..+|+|+|--. . ..++..++.
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA------g-RGIDIpnVS 587 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA------G-RGIDIPNVS 587 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc------c-cCCCCCccc
Confidence 589999999999988888887 57999999998876555544 34678999999742 2 568889998
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 876
No 193
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.83 E-value=0.85 Score=42.92 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcch----HHHHHHHHhcC----CcEEEEcChHHHHHHhhCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEV----KADVKKIEEEG----ANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~----~~~~~~l~~~~----~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
++|++|+..+ .++.+.+.++.. .++ +....|.... .+....+.... .+++++|.+.+.........+
T Consensus 393 ~liv~p~s~~-~nw~~e~~k~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 393 ALIVVPASLL-SNWKREFEKFAP---DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred eEEEecHHHH-HHHHHHHhhhCc---cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 5788887654 445666666654 445 6666665541 33333443322 799999999887732111345
Q ss_pred cCCcccEEEEecccccccc
Q 026925 73 DFRNLEILVLDEADRLLDM 91 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~ 91 (230)
.-.....+|+||+|.+.+.
T Consensus 469 ~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhceeeeeehhhHHHHhhh
Confidence 5677889999999996543
No 194
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.75 E-value=2.6 Score=37.03 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=52.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-|..++..+.+. ++.+..++|+.+..++.. .+.++...|||+|. .+. ..+++.+++
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~--~GIDi~~v~ 405 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG--RGIHIDGIS 405 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCCcccCCC
Confidence 799999999999888777653 567888888877665544 33356789999995 333 568889999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.-
T Consensus 406 ~VI~~ 410 (475)
T PRK01297 406 HVINF 410 (475)
T ss_pred EEEEe
Confidence 99854
No 195
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.73 E-value=1.8 Score=38.28 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---hcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~---~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|-|+.-|.++...++.. +..+..++|+.+..+....|. ++.+.|+|+|--. . ..+++.+++
T Consensus 344 vIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA------a-RGLDi~dV~ 411 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA------A-RGLDVPDVD 411 (519)
T ss_pred EEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc------c-ccCCCcccc
Confidence 789999999999887777764 468899999998777666553 5679999999732 2 678889999
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 412 lVI 414 (519)
T KOG0331|consen 412 LVI 414 (519)
T ss_pred EEE
Confidence 887
No 196
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=89.65 E-value=2.4 Score=37.74 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+.+.+.... ++++..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~----g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~--rGiDip~v~ 438 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVT----GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG--RGVDLLRVR 438 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhcc----CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh--ccCCcccCC
Confidence 6899999999988777776532 678888999877655444 33457789999997 333 568899999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.=
T Consensus 439 ~VI~~ 443 (518)
T PLN00206 439 QVIIF 443 (518)
T ss_pred EEEEe
Confidence 99853
No 197
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.55 E-value=0.82 Score=37.51 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=38.5
Q ss_pred cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC---chHHHHHHHhccCC
Q 026925 73 DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ---TEAVEELSKAGLRN 131 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~---~~~~~~~~~~~~~~ 131 (230)
.....+.+|+||||.|-... ...+++.+...++...+++...-+ ++.+..-..+|...
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 35667999999999887654 455677777777777777765553 34444444444433
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.47 E-value=0.41 Score=39.17 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.4
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcE
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRT 110 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~ 110 (230)
--+++++||||+|.++..+. ...+...++++.+..++
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 35689999999999988763 33455567777665543
No 199
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.42 E-value=2.7 Score=38.47 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=51.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||+|+|+.-+.++...+... ++.+..++|+.+..+... .+.+++.+|||+|- .+. ..+++.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a--rGIDip~V 314 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA--RGLDVERI 314 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh--cCCCcccC
Confidence 3799999999999988877653 578888898876654433 44457899999995 333 35677777
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 77664
No 200
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=89.13 E-value=2.4 Score=38.62 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=51.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.+++..+++. ++++..++++.+..+... .+..+..+|+|+|.. +. ..+++.+++
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~~--~GIDip~V~ 306 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----FG--MGINKPNVR 306 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----hh--ccCCCCCcC
Confidence 689999999999988887764 678888999877654443 334567899999973 22 457778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 8774
No 201
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=89.08 E-value=4.3 Score=34.04 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc-hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|.+|+-+-.+|....+++. +|..++..+.+... ..+....+.++..+|+|+|- .+. ..+-+.+++..
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~---~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE--RGVTfp~vdV~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKK---LPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE--RGVTFPNVDVF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhh---CCccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh--cccccccceEE
Confidence 589999999999998888554 33557677776554 44666677678899999986 444 46788999999
Q ss_pred EEeccccccccccHHH-HHHHHHhCC-CCCcEEEEeecCchHHHH
Q 026925 81 VLDEADRLLDMGFQKQ-ISYIISRLP-KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 81 VvDEad~l~~~~~~~~-~~~i~~~l~-~~~q~i~~SAt~~~~~~~ 123 (230)
|++--|.++.....-. --+.-+.+. +.--+++|.--.+..+..
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 9998888765432211 112222222 234567776666655443
No 202
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.87 E-value=0.79 Score=43.45 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=57.4
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCCcc
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRNL 77 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~~l 77 (230)
|++.+-=||..=..++..+...+ |+.|+++..+.+..+.... -.|||.+||..-|- ++|+.+ ...-.+.+
T Consensus 184 vVTvNDYLA~RDaewm~p~y~fl-GLtVg~i~~~~~~~~Rr~a---Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~ 259 (1025)
T PRK12900 184 VVTVNDYLAQRDKEWMNPVFEFH-GLSVGVILNTMRPEERREQ---YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDF 259 (1025)
T ss_pred EEeechHhhhhhHHHHHHHHHHh-CCeeeeeCCCCCHHHHHHh---CCCcceecCCCccccccchhccccchhhhhccCC
Confidence 55666668877778888888887 9999998776555444333 46999999998752 233321 11124778
Q ss_pred cEEEEecccccc
Q 026925 78 EILVLDEADRLL 89 (230)
Q Consensus 78 ~~lVvDEad~l~ 89 (230)
.+.||||+|.++
T Consensus 260 ~faIVDEvDSvL 271 (1025)
T PRK12900 260 YFAIVDEVDSVL 271 (1025)
T ss_pred ceEEEechhhhh
Confidence 899999999886
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=88.68 E-value=1.1 Score=35.41 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=45.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
.+..+++.+.+.+...... -.-.+.+.+++++|++|.+... .+...+.++++.+......++++++.++
T Consensus 72 ~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 72 RGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4678888888776543211 0112556789999999977543 3466678888777655455666777654
No 204
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.27 E-value=5.6 Score=36.90 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEcCcchH-----HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc
Q 026925 12 SSQIYHVAQPFISTLPDVKSVLLVGGVEVK-----ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (230)
Q Consensus 12 a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad 86 (230)
.+++..++.++ +|+.++.-+.++.... .....+.++++||+|||+ ++. +..++.++.++.|=.+|
T Consensus 493 terieeeL~~~---FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia--KG~~fp~vtLVgvl~aD 562 (730)
T COG1198 493 TERIEEELKRL---FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA--KGHDFPNVTLVGVLDAD 562 (730)
T ss_pred HHHHHHHHHHH---CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh--cCCCcccceEEEEEech
Confidence 45566666665 6788998888876643 234455578899999998 443 45889999999999999
Q ss_pred cccccc
Q 026925 87 RLLDMG 92 (230)
Q Consensus 87 ~l~~~~ 92 (230)
..+...
T Consensus 563 ~~L~~~ 568 (730)
T COG1198 563 TGLGSP 568 (730)
T ss_pred hhhcCC
Confidence 988654
No 205
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=88.15 E-value=0.93 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
...++++++|++-..+...+..|... |+ ++..+.||+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLAL----GGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHc----CCCCEEEeCCCHH
Confidence 35678999999988889999999777 88 6888999875
No 206
>PTZ00424 helicase 45; Provisional
Probab=87.87 E-value=3.7 Score=34.99 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=52.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.++|++-|..+...+... ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~--~GiDip~v~ 337 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA--RGIDVQQVS 337 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc--CCcCcccCC
Confidence 689999999888877766543 578888999877655443 33456799999996 333 568889999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-.
T Consensus 338 ~VI~~~ 343 (401)
T PTZ00424 338 LVINYD 343 (401)
T ss_pred EEEEEC
Confidence 988533
No 207
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.86 E-value=3.6 Score=37.30 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=51.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+..|.++...+... ++++..++++.+..+... .+.++..+|||+|-. +. ..++..+++
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a-----~~--~GID~p~v~ 294 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA-----FG--MGIDKPNVR 294 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCcCCCCC
Confidence 589999999999988887653 678888998877654443 334578999999973 22 456778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 295 ~VI~ 298 (591)
T TIGR01389 295 FVIH 298 (591)
T ss_pred EEEE
Confidence 8774
No 208
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=87.86 E-value=3 Score=39.35 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=53.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---hcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~---~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++|++.=+.++.+.+++... .++.+..++|+.+..++...+. ++...|||+|. ... ..+++.+++
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE--rsLtIp~V~ 285 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE--TSLTIEGIR 285 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH--hcccccCce
Confidence 69999999999998888886322 2678899999988877776663 24578999998 333 567788888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 665
No 209
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.85 E-value=3.4 Score=34.96 Aligned_cols=117 Identities=13% Similarity=0.142 Sum_probs=72.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|+|.||.-|..++..++.- |-.|.+++|+-...+... .+..+...++|+|.-. . ..++...+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~-----A--RGiDv~qV 399 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC-----A--RGIDVAQV 399 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh-----h--cccccceE
Confidence 5799999999999999888875 567888888766554433 3345678999999843 2 46788888
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCC----cEEEEe---ecCchHHHHHHHhccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLR----RTGLFS---ATQTEAVEELSKAGLRN 131 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~----q~i~~S---At~~~~~~~~~~~~~~~ 131 (230)
.++|= .|.-.+.+-.++.+..+.++.+.- .-++++ .-++.++......++..
T Consensus 400 s~VvN--ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 400 SVVVN--YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred EEEEe--cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 88773 332223222344444454454322 223332 33445555555666643
No 210
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=87.53 E-value=3.6 Score=39.04 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=60.6
Q ss_pred CcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--C
Q 026925 108 RRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--N 185 (230)
Q Consensus 108 ~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~ 185 (230)
..+.++|.|......++...| +-++. .+++.. +........ .+.....+|+..+..-+.. .
T Consensus 504 ~kl~GmTGTa~~e~~Ef~~iY-~l~v~-~iPt~k--------------p~~r~d~~d-~iy~t~~~k~~ai~~ei~~~~~ 566 (970)
T PRK12899 504 EKLAGMTGTAITESREFKEIY-NLYVL-QVPTFK--------------PCLRIDHND-EFYMTEREKYHAIVAEIASIHR 566 (970)
T ss_pred chhcccCCCCHHHHHHHHHHh-CCCEE-ECCCCC--------------CceeeeCCC-cEecCHHHHHHHHHHHHHHHHh
Confidence 367788999876666665544 32232 222220 111111111 2233445777766665543 2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
.++|+||-|.|.+..+.++..|.+. |++..++...-
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~----gi~h~vLNak~ 602 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQN----RIEHTVLNAKN 602 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc----CCcceecccch
Confidence 6689999999999999999999988 88877776653
No 211
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.45 E-value=1.7 Score=39.37 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=57.1
Q ss_pred CeEEEeCChhhH-----HHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTRELS-----SQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eLa-----~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
||.+|||--|=. .-....+..+...+|+.++..++|.-+.. +-...+.++..||+|+|- .+. -.+
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIE--VGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIE--VGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEE--ecc
Confidence 577888864322 12334455555567788999999976544 444455567899999986 333 567
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
+..+..+.||..|+++
T Consensus 548 dVPnATvMVIe~AERF 563 (677)
T COG1200 548 DVPNATVMVIENAERF 563 (677)
T ss_pred cCCCCeEEEEechhhh
Confidence 8899999999999997
No 212
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.03 E-value=2.4 Score=41.55 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=52.5
Q ss_pred eEEEeCCh---hhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTR---ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~---eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+ +-|.++...+++. ++++..++|+.+ ....+.+.+++.+|+|||-. ..+.+. ..+++.+ +
T Consensus 329 ~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~-~~~l~~Fr~G~~~vLVata~-~tdv~a--RGIDip~~V 399 (1171)
T TIGR01054 329 GIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKP-KEDYEKFAEGEIDVLIGVAS-YYGTLV--RGLDLPERV 399 (1171)
T ss_pred EEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCC-HHHHHHHHcCCCCEEEEecc-ccCccc--ccCCCCccc
Confidence 68999999 8888887777654 688899999875 35667777889999999741 111222 4577776 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 400 ~~vI~ 404 (1171)
T TIGR01054 400 RYAVF 404 (1171)
T ss_pred cEEEE
Confidence 88887
No 213
>PHA02653 RNA helicase NPH-II; Provisional
Probab=87.00 E-value=2.8 Score=38.61 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=51.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-HHHH-HhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-VKKI-EEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~l-~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+||.+|+++-+..+.+.+++.. +++.+..++|+.+..++ ...+ .+++..|+|+|. ... ..++..++.+
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IAE--RGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YLE--SSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hhh--ccccccCeeE
Confidence 6999999998888777776543 36788999998776533 2444 346789999998 333 5688888877
Q ss_pred EE
Q 026925 80 LV 81 (230)
Q Consensus 80 lV 81 (230)
+|
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 76
No 214
>PRK13767 ATP-dependent helicase; Provisional
Probab=86.97 E-value=5.2 Score=38.13 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=54.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+||+++|+..|..++..+++.... +.+..+...+|+.+..+.. +.+.++...++|+|.- +. ..+++.++
T Consensus 287 ~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le--~GIDip~V 359 (876)
T PRK13767 287 TLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE--LGIDIGYI 359 (876)
T ss_pred EEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH--hcCCCCCC
Confidence 689999999999998888875431 1135677788887765443 3455678899999983 32 35778888
Q ss_pred cEEEEec
Q 026925 78 EILVLDE 84 (230)
Q Consensus 78 ~~lVvDE 84 (230)
+++|.-.
T Consensus 360 d~VI~~~ 366 (876)
T PRK13767 360 DLVVLLG 366 (876)
T ss_pred cEEEEeC
Confidence 8888543
No 215
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=86.86 E-value=0.76 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc--eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL--SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~--~~~~lh~~~~ 226 (230)
.+.+++++||++-.++...+..|... |+ ++..+.||+.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~----G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKEL----GLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHc----CCccceeeecchHH
Confidence 35678999999988999999999988 99 6899999874
No 216
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=86.79 E-value=3.8 Score=38.63 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh---cCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~---~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++|+++-+.++...+++... +++.+..++|+-+..++...+.. +...|||+|. ... ..+++.+++
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAE--rgItIp~V~ 282 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAE--TSLTIEGIR 282 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHh--hcccccCce
Confidence 69999999999888888876432 26899999999888777776642 3468999997 222 567777787
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 283 ~VI 285 (819)
T TIGR01970 283 VVI 285 (819)
T ss_pred EEE
Confidence 665
No 217
>PRK09401 reverse gyrase; Reviewed
Probab=86.70 E-value=1.5 Score=42.89 Aligned_cols=71 Identities=17% Similarity=0.438 Sum_probs=50.8
Q ss_pred eEEEeCChhh---HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTREL---SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~eL---a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+.- |..+.+.++.. ++++..++|+. ......+.++..+|+|||..- .+.+. ..+++.+ +
T Consensus 331 ~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a--RGIDiP~~I 400 (1176)
T PRK09401 331 GLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV--RGIDLPERI 400 (1176)
T ss_pred EEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee--ecCCCCcce
Confidence 6899999655 87777776654 78999999987 445577778899999997421 11222 4567666 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 401 ryVI~ 405 (1176)
T PRK09401 401 RYAIF 405 (1176)
T ss_pred eEEEE
Confidence 88876
No 218
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=86.50 E-value=27 Score=32.25 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=55.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|+++|+.-|..+...+... ++++..++|+.+..+... .+..++.+|+|||- .+. .++++.+++
T Consensus 449 viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~--rGfdlp~v~ 516 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDIPEVS 516 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh--CCccccCCc
Confidence 789999999998887777654 678888888765443333 34456789999984 333 568899999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+=|++..
T Consensus 517 lVii~d~eif 526 (652)
T PRK05298 517 LVAILDADKE 526 (652)
T ss_pred EEEEeCCccc
Confidence 9998888754
No 219
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=86.15 E-value=6.9 Score=37.20 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
..+++|||++|.+..+.++..|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhh
Confidence 446999999999999999999976
No 220
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.99 E-value=1.3 Score=29.29 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
...++++||.+-..+...+..|... |+++..+.||+.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~----G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQM----GWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHc----CCEEEEecCcHH
Confidence 3568999999987888888888777 999888899875
No 221
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=85.97 E-value=0.99 Score=35.05 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=31.9
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
...-++|+||+|.=+|......+..++..+.+..|+++.|
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T 196 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT 196 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4456899999999999988888888888888889999864
No 222
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=85.97 E-value=1.3 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCCeEEEEcCch--hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTC--ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~--~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+..++++||++- ..+...+..|... |+++..+.||+.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~----G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAEL----GFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHc----CCeEEEecCCHH
Confidence 567999999975 4788888999888 999889998874
No 223
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=85.86 E-value=0.79 Score=34.60 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=37.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|-+|+.+=++.+++.+..-.... +.+. ...........+...+..|-+-.|..+...- ...+.+|
T Consensus 29 I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~--------~~~Dlli 95 (177)
T PF05127_consen 29 ILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQIIKLRFNKQRIEFVAPDELLAEK--------PQADLLI 95 (177)
T ss_dssp EEEE-SS--S-HHHHHCC-------------------------------CCC--B--HHHHCCT------------SCEE
T ss_pred EEEecCCHHHHHHHHHHHHhhcccc-cccc----ccccccccccccccccceEEEECCHHHHhCc--------CCCCEEE
Confidence 5777899998887777766554433 2222 0000001111121235667777776532221 2347999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
||||=.+ -.+.+..++ +....++||.|+.
T Consensus 96 VDEAAaI----p~p~L~~ll----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLL----RRFPRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHH----CCSSEEEEEEEBS
T ss_pred EechhcC----CHHHHHHHH----hhCCEEEEEeecc
Confidence 9999976 234444443 2334567788874
No 224
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=85.68 E-value=1.9 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.++++|+|.+=.++...+..|... |++ +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER----GFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh----CCcceeeechhHH
Confidence 46679999999987888888888877 995 888988874
No 225
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.64 E-value=5.2 Score=31.24 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=61.7
Q ss_pred EeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc--hHHHHHHH----Hh--cCCcEEEEcChHHHHHHhh---CCcc-
Q 026925 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE--VKADVKKI----EE--EGANLLIGTPGRLYDIMER---MDVL- 72 (230)
Q Consensus 5 l~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~l----~~--~~~~Iiv~TP~~l~~~l~~---~~~~- 72 (230)
..+..++|......+..-... ......++|+.- +..-...+ .+ .+..|+..+.+.+...+.. .+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~--~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~ 89 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGE--RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIE 89 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTT--SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHH
T ss_pred cCCcHHHHHHHHHHHHhcCCC--CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccch
Confidence 445666666544444332111 234556666442 33222222 11 3577999998887553321 0211
Q ss_pred ----cCCcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCchH
Q 026925 73 ----DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEA 120 (230)
Q Consensus 73 ----~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~~ 120 (230)
.+.+.+++++|++|.+.... ....+.++++.+.. ..++++.|...|..
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 26789999999999886543 45666667766644 44666655555543
No 226
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=85.55 E-value=1.9 Score=37.94 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=54.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~l 80 (230)
+++.+++++-|..+++.++.+....|..+... .. ..+...+-.|.....+.....+.. .+..+=.+..++
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~--~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~ 127 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRK--KP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLA 127 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccch--hh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceE
Confidence 57899999999999999999987765433211 00 000001112332222222222211 122232356899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
|+||+|..-+......++.-+... .+.+++..
T Consensus 128 i~DE~h~~~~~~~~~~l~~g~~~r-~~pl~~~I 159 (477)
T PF03354_consen 128 IFDELHAHKDDELYDALESGMGAR-PNPLIIII 159 (477)
T ss_pred EEeCCCCCCCHHHHHHHHhhhccC-CCceEEEE
Confidence 999999886644444444444443 34454444
No 227
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=85.39 E-value=1.3 Score=29.46 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
...++++++|++-..+...+..|.+. |+ ++..+.||+.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~----g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAI----SAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHc----CCccEEEeeCCHH
Confidence 34579999999988888999999887 77 6777888863
No 228
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=85.02 E-value=3.2 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=19.4
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEE
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLF 113 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~ 113 (230)
..+|+||+|++.+ .+.+..+.+.... ..+++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~ 122 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLV 122 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEE
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEE
Confidence 7899999999642 4444444333333 4445544
No 229
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=84.82 E-value=4.2 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=48.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-------HHHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-------KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
++|+++|++-|..+++.+++.. ++..+..++|+.+..+.. +.+.++...|+|+|. .+. ..+++
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~--~GiDi 294 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIE--ASLDI 294 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chh--ceecc
Confidence 7999999999999888887653 235788889887654432 234446788999997 222 34555
Q ss_pred CcccEEEEe
Q 026925 75 RNLEILVLD 83 (230)
Q Consensus 75 ~~l~~lVvD 83 (230)
+++++|.+
T Consensus 295 -~~~~vi~~ 302 (358)
T TIGR01587 295 -SADVMITE 302 (358)
T ss_pred -CCCEEEEc
Confidence 35666654
No 230
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=84.45 E-value=6.2 Score=32.20 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|++|+|.|+.-+......++.- +..+.+.+|+-+.++..+ .+.+++..|+++|-- .. ..++...+
T Consensus 268 QavIFcnTk~kVdwLtekm~~~-----nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV-----wa--RGiDv~qV 335 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV-----WA--RGIDVQQV 335 (400)
T ss_pred eEEEEecccchhhHHHHHHHhh-----CceeeeccCCcchhHHHHHHHHhhcCCceEEEEech-----hh--ccCCccee
Confidence 6899999999998777666653 578889999877665544 334577899999863 22 56777888
Q ss_pred cEEE
Q 026925 78 EILV 81 (230)
Q Consensus 78 ~~lV 81 (230)
.++|
T Consensus 336 slvi 339 (400)
T KOG0328|consen 336 SLVI 339 (400)
T ss_pred EEEE
Confidence 8876
No 231
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=84.39 E-value=1.5 Score=29.93 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=30.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce--EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS--LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~--~~~lh~~~~ 226 (230)
+.++++|||.+-.++...+..|... |++ +..+.||++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~----G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINA----GLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHC----CCCcceeEecCCHH
Confidence 4568999999988888888999887 984 788999875
No 232
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.35 E-value=13 Score=33.25 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=56.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.+-+.|-|.|++..+. .++++++..++|+-+.. +....+..+...++|+|- ++.+ .+++.++.
T Consensus 390 ~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd-----ll~R--GiDf~gvn 458 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD-----LLAR--GIDFKGVN 458 (593)
T ss_pred eEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----hhhc--cccccCcc
Confidence 5788999999999888887 24489999999985543 333445457789999986 5654 49999999
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|-++.-
T Consensus 459 ~VInyD~p 466 (593)
T KOG0344|consen 459 LVINYDFP 466 (593)
T ss_pred eEEecCCC
Confidence 99986655
No 233
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=84.17 E-value=1.3 Score=29.83 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||++-..+...+..|... |++ +..+.||+.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL----GYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc----CCccceecCCcHH
Confidence 4679999999988999999999888 884 788888874
No 234
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.05 E-value=2.5 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=43.6
Q ss_pred CCcccEEEEeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
....+++|+||+=..++.+ -.+.+..+++..|...-+|+.+-..|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4678999999999887776 4667888888888888899988888888777765
No 235
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=84.02 E-value=2 Score=28.33 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred CCCeEEEEcCc--hhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMT--CACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t--~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.++++++|.+ +..+...+..|... |+ ++..+.||+.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~----G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSEL----GYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc----CccCEEEccCCHH
Confidence 36799999998 44477888888887 87 5888999875
No 236
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=83.91 E-value=7.1 Score=36.51 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=56.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhC-C--CceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTL-P--DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~-~--~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
.+||.++||..|..++..++...... + +.++....|+...++... .+.++..+++|+|.. +. ..+++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~-----le--rGIDI 345 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA-----LE--LGVDI 345 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch-----Hh--ccCCc
Confidence 47999999999999999888754321 1 356777888877654433 344677899999973 33 46888
Q ss_pred CcccEEEEecc
Q 026925 75 RNLEILVLDEA 85 (230)
Q Consensus 75 ~~l~~lVvDEa 85 (230)
.+++++|.-..
T Consensus 346 ~~vd~VI~~~~ 356 (742)
T TIGR03817 346 SGLDAVVIAGF 356 (742)
T ss_pred ccccEEEEeCC
Confidence 89998886654
No 237
>PRK08727 hypothetical protein; Validated
Probab=83.82 E-value=2.6 Score=33.27 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=39.2
Q ss_pred hcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc-cHHHHHHHHHhCCCC-CcEEEEeecCch
Q 026925 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKL-RRTGLFSATQTE 119 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~~-~q~i~~SAt~~~ 119 (230)
+.+..+++.+...+...+.. ..-.+.+.+.+|+||+|.+..+. ....+-++.+..... .++++.|...+.
T Consensus 67 ~~~~~~~y~~~~~~~~~~~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 67 QAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred HcCCcEEEEeHHHhhhhHHH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 35667777776654433322 11135677899999999886443 334455555554333 345554444343
No 238
>PF13173 AAA_14: AAA domain
Probab=83.68 E-value=2.3 Score=29.98 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=26.5
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.-.++++||+|.+-+ +...+..+.+.- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 556899999999854 467777777655 45666665444
No 239
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=83.67 E-value=1.9 Score=28.43 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..++++++|++-..+...+..|... |+ ++..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~----G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA----GFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc----CCceEEEcCCCHH
Confidence 5679999999999999999999988 88 5788888864
No 240
>PRK06893 DNA replication initiation factor; Validated
Probab=83.60 E-value=2.6 Score=33.15 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCC-CCcEEEEeecCchH
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~-~~q~i~~SAt~~~~ 120 (230)
.+..+.+.+.......... -.-.+.+.+.+++||+|.+... .+...+..+++.+.. ..+++++|++.++.
T Consensus 66 ~~~~~~y~~~~~~~~~~~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 66 NQRTAIYIPLSKSQYFSPA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCCeEEeeHHHhhhhhHH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3456777766532222111 0112567889999999988633 344566666666544 34566777776543
No 241
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=83.52 E-value=12 Score=35.93 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcc---
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVL--- 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~--- 72 (230)
|||++|-.-+-+ +++.|.++...+. .+.|..+..-...++.... +.+.| -|.|.-...+..+-.. ...
T Consensus 731 aLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g-gVmIiGYdmyRnLa~g-r~vk~r 807 (1567)
T KOG1015|consen 731 ALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG-GVMIIGYDMYRNLAQG-RNVKSR 807 (1567)
T ss_pred EEEEcchHHHHH-HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC-CEEEEehHHHHHHhcc-cchhhh
Confidence 799999776554 5777777765431 3555555443333333332 22233 4666555554443322 111
Q ss_pred ----------cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 73 ----------DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 73 ----------~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
--..-+++|-||+|.+-+. ...+...+..+...+++++....+-+++
T Consensus 808 k~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 808 KLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKRRIILTGTPLQNNL 864 (1567)
T ss_pred HHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhheeEEeecCchhhhh
Confidence 1134589999999977544 3455556666655666666544444443
No 242
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=83.43 E-value=1.4 Score=31.11 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++|||+ +-..+...+..|... |+++..+.||+.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~----G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL----GIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc----CCceeEeCCcHH
Confidence 5679999997 566778888888777 999999999975
No 243
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.16 E-value=19 Score=31.57 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=43.0
Q ss_pred cCCcEEEEcChHHHHHHhh---CCc---c--cCCcccEEEEeccccccccc-cHHHHHHHHHhCC-CCCcEEEEeecCch
Q 026925 50 EGANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTE 119 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~---~~~---~--~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~-~~~q~i~~SAt~~~ 119 (230)
.+..+++.+.+.+...+.. .+. + ...+.+.+++||+|.+.... ....+..+++.+. ...|+++.|.+.+.
T Consensus 168 ~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~ 247 (445)
T PRK12422 168 SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQ 247 (445)
T ss_pred cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHH
Confidence 4678999988776543321 011 1 14678899999999876533 3445555555442 34566665544454
Q ss_pred HHH
Q 026925 120 AVE 122 (230)
Q Consensus 120 ~~~ 122 (230)
.+.
T Consensus 248 ~l~ 250 (445)
T PRK12422 248 DLK 250 (445)
T ss_pred HHh
Confidence 443
No 244
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=83.07 E-value=4.2 Score=32.06 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE--EcCcchH----HHHHHHH---hcCCcEEEEcChHHHHHHhh----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL--VGGVEVK----ADVKKIE---EEGANLLIGTPGRLYDIMER---- 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~--~~~~~~~----~~~~~l~---~~~~~Iiv~TP~~l~~~l~~---- 68 (230)
+-+++| +.|..|.+..++.-.+..-+-++..+ ..+.... +....+. ...-.|+++||+.++.+.-.
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 456777 56888988888877665434344433 2322221 1121111 13345999999998764311
Q ss_pred --CCcc-----------cCCcccEEEEeccccccc
Q 026925 69 --MDVL-----------DFRNLEILVLDEADRLLD 90 (230)
Q Consensus 69 --~~~~-----------~~~~l~~lVvDEad~l~~ 90 (230)
++.. .+.+-..=|+||+|..++
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0111 123344568888888765
No 245
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=82.85 E-value=2 Score=39.51 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 172 DEKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 172 ~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
..|.+.+.+.+- .....++||||.+++.|..+-++|... ...|+++..+.|.
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQ 449 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeec
Confidence 457777776664 336679999999999999999999852 2567788777764
No 246
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=82.75 E-value=2.2 Score=40.81 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=55.1
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc-chHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCCc
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRN 76 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~~ 76 (230)
|++.+-=||..=..++..+...+ |+.++++.... +..+.... -.|||..||...|- ++|+.+ ...-.+.
T Consensus 215 vVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~a---Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~ 290 (1112)
T PRK12901 215 VVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRKA---YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRK 290 (1112)
T ss_pred EEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHHh---CCCcceecCCCccccccchhccccchHhhhCcC
Confidence 56666678877777888888777 99999886633 33332222 46999999998752 233321 1122466
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
+.+.||||+|.++
T Consensus 291 ~~fAIVDEvDSIL 303 (1112)
T PRK12901 291 HNYAIVDEVDSVL 303 (1112)
T ss_pred CceeEeechhhhh
Confidence 8899999999886
No 247
>PRK14701 reverse gyrase; Provisional
Probab=82.68 E-value=4.3 Score=41.28 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=47.5
Q ss_pred eEEEeCChhhH---HHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTRELS---SQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~eLa---~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+.-+ .++...+.. . ++++..++++ .....+.+.++..+|+|||-.- ...+. ..+++.+ +
T Consensus 333 gIVF~~t~~~~e~ae~la~~L~~---~--Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~-~gvaa--RGIDiP~~V 402 (1638)
T PRK14701 333 GLIFVPIDEGAEKAEEIEKYLLE---D--GFKIELVSAK--NKKGFDLFEEGEIDYLIGVATY-YGTLV--RGLDLPERI 402 (1638)
T ss_pred eEEEEeccccchHHHHHHHHHHH---C--CCeEEEecch--HHHHHHHHHcCCCCEEEEecCC-CCeeE--ecCccCCcc
Confidence 68999998765 555555544 2 7899888886 3455677778999999999521 11111 3466655 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 403 ryvi~ 407 (1638)
T PRK14701 403 RFAVF 407 (1638)
T ss_pred CEEEE
Confidence 88876
No 248
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=82.34 E-value=2.9 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=32.4
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
.....+++++|++-..+..++..|... |+ ++..+-||+.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~----G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKA----GGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHh----CcccEEEecCChh
Confidence 346679999999999999999999988 66 5777888874
No 249
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.15 E-value=1.3 Score=40.48 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=30.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCccc--CCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLD--FRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~~lVvDEad~l~~ 90 (230)
..++++|+++..+..-... .... +..-..+|+||||++.+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~-~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVAL-EESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHh-hhhhccCCcccEEEEeccccchH
Confidence 4689999999998775443 2222 45678999999999987
No 250
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=82.04 E-value=1.6 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 177 QLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+...+... +.+++++||++-..+...+..|... |++ +..+-||+.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~----G~~~v~~l~GG~~ 114 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELL----GYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc----CCCCeeeeCChHH
Confidence 344444432 5679999999988899999999887 884 778888864
No 251
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=81.30 E-value=2.7 Score=29.15 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=31.0
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMT-CACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t-~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||++ -..+...+..|... |++ +..+-||+.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~----G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF----GHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc----CCCCEEEecCCHH
Confidence 56799999999 58888889999888 875 888888874
No 252
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=81.24 E-value=1.8 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..++++|||++-..+...+..|... |++ +..+-||+.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDM----GLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----ChHHhEeecCcHH
Confidence 4579999999877888888999877 886 778888764
No 253
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=81.24 E-value=2.6 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||++-..+...+..|.+. |+ ++..+.||+.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~----G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ----GFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc----CCccEEEecCCHH
Confidence 4679999999988899999999887 88 4788998874
No 254
>PRK09694 helicase Cas3; Provisional
Probab=81.05 E-value=10 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=48.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-------HHH-HhcC---CcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-------KKI-EEEG---ANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~l-~~~~---~~Iiv~TP~~l~~~l~~~~ 70 (230)
++|+++|.+-|+++++.+++... ++..+..+++.....+.. +.+ .+++ ..|+|+|. .+..
T Consensus 563 vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----ViE~-- 633 (878)
T PRK09694 563 VCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ-----VVEQ-- 633 (878)
T ss_pred EEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----chhh--
Confidence 68999999999999999986532 146788888886544331 122 1122 36999994 3432
Q ss_pred cccCCcccEEEEeccc
Q 026925 71 VLDFRNLEILVLDEAD 86 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad 86 (230)
.+++ +++.+|-|-+-
T Consensus 634 GLDI-d~DvlItdlaP 648 (878)
T PRK09694 634 SLDL-DFDWLITQLCP 648 (878)
T ss_pred eeec-CCCeEEECCCC
Confidence 3444 46777777443
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.00 E-value=13 Score=29.26 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=37.5
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCC--CCcEEEEeecCc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK--LRRTGLFSATQT 118 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~--~~q~i~~SAt~~ 118 (230)
.+..+.+.+.+........ -.-.+.+.+.+++||+|.+... .....+.++++.+.. ..++++ |++.+
T Consensus 72 ~~~~v~y~~~~~~~~~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~ 141 (235)
T PRK08084 72 RGRAVGYVPLDKRAWFVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRP 141 (235)
T ss_pred CCCeEEEEEHHHHhhhhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCC
Confidence 4566777766653322211 0011345679999999988643 355666666666533 235555 55544
No 256
>PRK05320 rhodanese superfamily protein; Provisional
Probab=80.71 E-value=3.7 Score=33.01 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.+++++||.+=.+|+..+..|++. |++ +..+.||+.
T Consensus 173 ~kdk~IvvyC~~G~Rs~~Aa~~L~~~----Gf~~V~~L~GGi~ 211 (257)
T PRK05320 173 LAGKTVVSFCTGGIRCEKAAIHMQEV----GIDNVYQLEGGIL 211 (257)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHc----CCcceEEeccCHH
Confidence 36789999999999999999999988 995 888999874
No 257
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.42 E-value=3.2 Score=34.13 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=29.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
...+++|+||+|.+........+..+++..+...++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 45689999999988444445667777877777777776543
No 258
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=80.40 E-value=2.7 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=21.9
Q ss_pred cCCcEEEEcChHHHHHHhhCCccc-C-CcccEEEEecccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLD-F-RNLEILVLDEADRLL 89 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~-~-~~l~~lVvDEad~l~ 89 (230)
..++|+++|+..... ..+. . ..++++|||||-.+.
T Consensus 169 ~~~~vi~~T~~~~~~-----~~~~~~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 169 KEADVIFTTLSSAAS-----PFLSNFKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HT-SEEEEETCGGG------CCGTT-----SEEEETTGGGS-
T ss_pred ccccccccccccchh-----hHhhhhcccCCEEEEeCCCCcc
Confidence 568999999987622 2222 2 278999999999864
No 259
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=80.12 E-value=3.2 Score=31.25 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
-.+.+++|+||+-..++.++ .+++..+++..|....+|+..-..|+.+..++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35688999999998888773 5577788888888888999888888877777653
No 260
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.07 E-value=1.2 Score=41.83 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=46.9
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~ 131 (230)
--+.++||+|.-++..|+..+-.++..+....|+|. .|+-+++...+.+|++.
T Consensus 1120 APFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1120 APFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYGV 1172 (1200)
T ss_pred cchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhce
Confidence 347899999999999999999999999998999886 68889999999998763
No 261
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.85 E-value=1.2 Score=41.26 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+||||+...-|.+---+ .-..++++ ..+||||||.+.+
T Consensus 195 ~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 195 FANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred cCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 489999998876543221 11233444 7899999999976
No 262
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=79.37 E-value=8.6 Score=25.00 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=31.8
Q ss_pred eEEEeCChhhHHHHH-HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH
Q 026925 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~-~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l 62 (230)
+|++|++.--...+. ..+++.+... ++.+....+...... .. ...+|++++||+--
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~~~~~~---~~-~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGSILEVE---EI-ADDADLILLTPQIA 58 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEETTTHH---HH-HTT-SEEEEEESSG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEecccccc---cc-cCCCcEEEEcCccc
Confidence 577887754444444 5555555554 565555554422222 12 46799999999754
No 263
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=79.35 E-value=27 Score=26.96 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=26.6
Q ss_pred CCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 74 FRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+.+.+++|+||+|.+... .....+..+++.+......++++++.+
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 345579999999987543 235566666655433222455555543
No 264
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=79.09 E-value=5 Score=29.08 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred EEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 166 YLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 166 ~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
|+......+...++.|+++. .+.+++|.|.+.+.++.+=..|-..
T Consensus 6 FY~l~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 6 FYHLTLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred EEecCchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 44446667888899999754 6789999999999999999999875
No 265
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=78.98 E-value=2.9 Score=40.01 Aligned_cols=96 Identities=8% Similarity=0.044 Sum_probs=60.7
Q ss_pred cEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CC
Q 026925 109 RTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NK 186 (230)
Q Consensus 109 q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~ 186 (230)
.+.++|.|......++...|--+.+.| .... +.......- .+.....+|..++..-+.. ..
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~I-PTnr---------------P~~R~D~~D-~vy~t~~eK~~Aii~ei~~~~~~ 627 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVI-PTNR---------------PIARKDKED-LVYKTKREKYNAVIEEITELSEA 627 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEEC-CCCC---------------CcceecCCC-eEecCHHHHHHHHHHHHHHHHHC
Confidence 456788888766666666553332222 1112 111111122 2233556777777766653 37
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
++|+||-+.|.+..+.+.+.|... |++-.++.+..
T Consensus 628 GrPVLVGT~SVe~SE~lS~~L~~~----gI~H~VLNAK~ 662 (1112)
T PRK12901 628 GRPVLVGTTSVEISELLSRMLKMR----KIPHNVLNAKL 662 (1112)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc----CCcHHHhhccc
Confidence 789999999999999999999988 88766665543
No 266
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=78.83 E-value=3.9 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.++++++|.+-..+...+..|... |++ +..+.||++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~----G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKC----GVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHc----CCCCEEEEeCcHH
Confidence 578999999888888888899887 885 778999875
No 267
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.52 E-value=4.2 Score=32.32 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=29.8
Q ss_pred cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 73 DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
...+-+.+|+||||.|-+. ....+++-+.-..+..++.+...+
T Consensus 110 p~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 3467789999999988654 466777777666666655554444
No 268
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=77.87 E-value=13 Score=36.44 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=51.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.+.|+.-|.++...+... ++++..++||.+..+... .+..+..+|||+|-. +. ..++..+++
T Consensus 683 gIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA-----FG--MGIDkPDVR 750 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA-----FG--MGINKPDVR 750 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech-----hh--cCCCccCCc
Confidence 589999999998888777653 678899999877654433 444577999999973 22 457888888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 751 ~VI 753 (1195)
T PLN03137 751 FVI 753 (1195)
T ss_pred EEE
Confidence 887
No 269
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=77.86 E-value=4.6 Score=27.97 Aligned_cols=40 Identities=3% Similarity=-0.015 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMKQV 228 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~~~ 228 (230)
.+.++++++|++-..+...+..|... |++ +..+-||++.-
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~----G~~~v~~l~gG~~~~ 102 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQA----GFTNVYNVLEGFEGD 102 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHC----CCCeEEECcCceecC
Confidence 35678999999988999999999888 885 77789988754
No 270
>PRK07413 hypothetical protein; Validated
Probab=77.60 E-value=26 Score=29.96 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
-...+++|+||+-..++.++ .+.+..+++..|...-+|+..-..|+.+.+++..
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 35678999999999988874 5577778888888888999888888877777653
No 271
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=77.47 E-value=6.9 Score=28.83 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=40.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 165 EYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 165 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.||.+....+...++.|+++- .+.+++|.|.+.+.++.|=..|-..
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 577778888999999999854 6789999999999999999998865
No 272
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.89 E-value=5.1 Score=30.66 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=43.2
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
-...+++|+||+=..++.++ .+++..+++..|...-+|+..-..|+.+..++..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 35678999999999988884 5577778888888888888888788877776653
No 273
>PRK14873 primosome assembly protein PriA; Provisional
Probab=76.14 E-value=4.6 Score=37.19 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCC-ceEEeccCCCCCCC
Q 026925 171 PDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKS-LSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g-~~~~~lh~~~~~~e 229 (230)
.+.|.+.+++++..- .++++||.++....+.++...|++.+ | ..++.+|++++..|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f---~~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALL---GAGDVAVLSAGLGPAD 228 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHc---CCCcEEEECCCCCHHH
Confidence 468999999888743 56789999999999999999999885 5 78999999998754
No 274
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=75.93 E-value=3.3 Score=36.84 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred EEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 190 IIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 190 ~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
.|||.+|++-|.++.+.|.......|++++.+.|||..
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLav 303 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAV 303 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHH
Confidence 89999999999999999999988999999999999974
No 275
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=75.88 E-value=11 Score=28.95 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=44.2
Q ss_pred CceEEEEEcCcchHHHHHHHHh----cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHh
Q 026925 28 DVKSVLLVGGVEVKADVKKIEE----EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR 103 (230)
Q Consensus 28 ~~~v~~~~~~~~~~~~~~~l~~----~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~ 103 (230)
+.++.......+.......+.+ +-.-++|-.+..+.+.+.. ....+ +++.+.||||+ +++......+.++.+.
T Consensus 32 g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~-~~~~~-~~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 32 GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAA-LHEKP-PVDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHh-cccCC-CcCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 5677766655543322222211 1244566677777777765 22222 28899999999 6666667777777766
Q ss_pred C
Q 026925 104 L 104 (230)
Q Consensus 104 l 104 (230)
+
T Consensus 109 l 109 (201)
T COG1435 109 L 109 (201)
T ss_pred c
Confidence 5
No 276
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=75.74 E-value=5.6 Score=30.06 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=42.7
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
-...+++|+||+-..++.++ .+++..+++..|...-+|+..-..|+.+..++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 36689999999999888874 557777888888888899988888877776664
No 277
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=75.52 E-value=4 Score=33.54 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=73.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCC-------CCCcEEEEeecCchHHHHHHHhccCCCe---EEEEeccC--
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPV---RVEVRAES-- 141 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-------~~~q~i~~SAt~~~~~~~~~~~~~~~~~---~i~~~~~~-- 141 (230)
...=.++|+||+|.|- .+..+.+.-.+++.| ++.-.|++|.+..+++...+..+..+-. .+....-+
T Consensus 176 ~C~rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~ 254 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPA 254 (344)
T ss_pred hcCCceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHH
Confidence 3445789999999874 345666666666654 2446889998888777766666554322 12111110
Q ss_pred -cccccccchhcccc-CCCCccceEEEEEcCCCCcHH---HHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 142 -KSHHVSASSQQLAS-SKTPLGLHLEYLECEPDEKPS---QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 142 -~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~---~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.....+....+... ...+.++..+|++..+-+|.. -+..-+++.+ +.+..+.++++++.+.-.
T Consensus 255 L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg------~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 255 LMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRG------LAPDQDFVERVANSLSFF 322 (344)
T ss_pred HHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcc------cccchHHHHHHHHhhccc
Confidence 00000001011111 223445555677777766653 3344444444 788899999999887643
No 278
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=75.45 E-value=8.6 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..+...+... ...+++|+|.+-..+...+..|... |+ ++..+.||+.
T Consensus 37 ~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~----G~~~v~~L~GG~~ 85 (145)
T cd01535 37 AQLAQALEKLPAAERYVLTCGSSLLARFAAADLAAL----TVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHc----CCcCeEEecCcHH
Confidence 3344445443 4478999999988899899899887 77 7899999864
No 279
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=75.20 E-value=5.7 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
..+++++||++-.++...+..|.+. |++....-||+.
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~----G~~~v~~~GG~~ 95 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEM----GYTHAENAGGLK 95 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHc----CCCeEEecCCHH
Confidence 3468999999988999999999887 887555567764
No 280
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=75.17 E-value=17 Score=34.33 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=24.3
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHH
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~ 122 (230)
.+|+||-|+|... ...+..|. .+ ...-++=||||+.+...
T Consensus 208 IvIvDEPh~f~~~--~k~~~~i~-~l-~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 208 IVIVDEPHRFLGD--DKTYGAIK-QL-NPLLILRFGATFKDEYN 247 (985)
T ss_pred EEEecChhhcccc--hHHHHHHH-hh-CceEEEEecccchhhhc
Confidence 5899999999763 11222222 22 12335678999887654
No 281
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=75.01 E-value=6.6 Score=36.77 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=56.4
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCCcc
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRNL 77 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~~l 77 (230)
|+...-=||.--..++.++...+ |++++...++.+..+....+ .|||..+|...+- ++++.+ ...-...+
T Consensus 126 vVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~ 201 (822)
T COG0653 126 VVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGL 201 (822)
T ss_pred EeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccC
Confidence 34444456666677788887777 89999998888777666665 4899999998751 122210 11114568
Q ss_pred cEEEEecccccc
Q 026925 78 EILVLDEADRLL 89 (230)
Q Consensus 78 ~~lVvDEad~l~ 89 (230)
.+-|+||+|-++
T Consensus 202 ~faIvDEvDSIL 213 (822)
T COG0653 202 NFAIVDEVDSIL 213 (822)
T ss_pred CeEEEcchhhee
Confidence 899999999875
No 282
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=74.93 E-value=8 Score=37.09 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=52.2
Q ss_pred eEEEeCC---hhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc-CCcc
Q 026925 2 GMIISPT---RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNL 77 (230)
Q Consensus 2 ~lil~Pt---~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~-~~~l 77 (230)
.||.+|+ +|.|+.++..++.. |+++....++. .+..+.+..+..|++||.....--+++. ++ +..+
T Consensus 338 gLIfV~~d~G~e~aeel~e~Lr~~-----Gi~a~~~~a~~--~~~le~F~~GeidvLVGvAsyYG~lVRG---lDLP~ri 407 (1187)
T COG1110 338 GLIFVPIDYGREKAEELAEYLRSH-----GINAELIHAEK--EEALEDFEEGEVDVLVGVASYYGVLVRG---LDLPHRI 407 (1187)
T ss_pred eEEEEEcHHhHHHHHHHHHHHHhc-----CceEEEeeccc--hhhhhhhccCceeEEEEecccccceeec---CCchhhe
Confidence 4899999 99999888888875 78888887755 5566777778999999977554334432 33 4555
Q ss_pred cEEEEecc
Q 026925 78 EILVLDEA 85 (230)
Q Consensus 78 ~~lVvDEa 85 (230)
++.|+=-+
T Consensus 408 rYaIF~Gv 415 (1187)
T COG1110 408 RYAVFYGV 415 (1187)
T ss_pred eEEEEecC
Confidence 66555333
No 283
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.52 E-value=9.5 Score=32.54 Aligned_cols=52 Identities=19% Similarity=0.054 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..+..|+.......++|.++|++-|.+++..+....+.-|.+++++-||++.
T Consensus 118 PIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m 169 (476)
T KOG0330|consen 118 PILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM 169 (476)
T ss_pred HHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH
Confidence 3344444444557899999999999999999998877778999999999863
No 284
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=74.40 E-value=6 Score=37.27 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=33.1
Q ss_pred CCCCcHHHHHHHHHh-----------CCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 170 EPDEKPSQLVDLLIK-----------NKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 170 ~~~~k~~~l~~ll~~-----------~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
++.-|+..|.++|.. .+..++||||+...+|.+|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 466799998888852 2456899999999999999999966
No 285
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=74.01 E-value=15 Score=36.53 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=52.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH-hcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+||.+|+++-+..+.+.+++.. ++...+..++|+.+..++...+. .++..|||+|. ... ..+.+.+++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~--~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN-----IAE--tSITIpgI~yV 359 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLN--LRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN-----VAE--TSLTVPGIKYV 359 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcC--CCcceEeecccCCCHHHHHHHhcccCCeeEEEecc-----HHh--hccccCcceEE
Confidence 6999999999988888887642 33456788899988877776664 24568999998 222 56778888877
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 6
No 286
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.94 E-value=4 Score=38.70 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=51.2
Q ss_pred eEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCc
Q 026925 30 KSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR 109 (230)
Q Consensus 30 ~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q 109 (230)
.+-.-.|+. ..+....+ ++|..-+|+=. -++.++. ++.--+.|+||+|.-+|.++-..+-++++.-..+.|
T Consensus 1067 EvkV~~G~i-WKeSL~EL-SGGQRSLVALs-LIlamL~------fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQ 1137 (1174)
T KOG0933|consen 1067 EVKVKFGGI-WKESLSEL-SGGQRSLVALS-LILAMLK------FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQ 1137 (1174)
T ss_pred EEEEEeCcc-HHHHHHHh-cCchHHHHHHH-HHHHHHc------CCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCe
Confidence 333334443 33344444 56666555422 1223332 344458999999999999999999998888888999
Q ss_pred EEEEeec
Q 026925 110 TGLFSAT 116 (230)
Q Consensus 110 ~i~~SAt 116 (230)
+|.+|=-
T Consensus 1138 FIVVSLK 1144 (1174)
T KOG0933|consen 1138 FIVVSLK 1144 (1174)
T ss_pred EEEEEch
Confidence 9998743
No 287
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=73.86 E-value=8.9 Score=34.58 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=45.5
Q ss_pred eEEEeCChhhHHHHH-HHHHHhhhhCCCceEEEEE---cCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLV---GGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~-~~~~~l~~~~~~~~v~~~~---~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++++.||.++|.... ..+..+....|.++-..-. .+.......+.+ .++.-.+++.+ +- ..+.-..+
T Consensus 65 ~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~-S~-------~~l~s~~~ 135 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRF-PGGFLYLVGAN-SP-------SNLRSRPA 135 (557)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheec-CCCEEEEEeCC-CC-------cccccCCc
Confidence 589999999997765 6777777776655422222 111111122222 23333333322 10 23444667
Q ss_pred cEEEEeccccccc
Q 026925 78 EILVLDEADRLLD 90 (230)
Q Consensus 78 ~~lVvDEad~l~~ 90 (230)
+++++||.|....
T Consensus 136 r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 136 RYLLLDEVDRYPD 148 (557)
T ss_pred CEEEEechhhccc
Confidence 8999999999853
No 288
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=73.66 E-value=22 Score=34.27 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=51.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---h--cCCcEEEEcChHHHHHHhhCCcccCCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---E--EGANLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~---~--~~~~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
+||++.+++-+..+.+.++... ++++..++|+.+..+....+. + +++.|+|+|- . .. ..+++..
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~~----Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd-----v-gs-eGlNlq~ 564 (956)
T PRK04914 496 VLVICAKAATALQLEQALRERE----GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE-----I-GS-EGRNFQF 564 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhcc----CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech-----h-hc-cCCCccc
Confidence 6899999999999888885432 788999999887665544442 2 3589999983 1 22 5677888
Q ss_pred ccEEEEe
Q 026925 77 LEILVLD 83 (230)
Q Consensus 77 l~~lVvD 83 (230)
.+++|.=
T Consensus 565 a~~VInf 571 (956)
T PRK04914 565 ASHLVLF 571 (956)
T ss_pred ccEEEEe
Confidence 8888743
No 289
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.57 E-value=40 Score=26.12 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=38.4
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCc-EEEEeecCch
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR-TGLFSATQTE 119 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q-~i~~SAt~~~ 119 (230)
.+..+++.+...+...+.. ..+.+.+|+||+|.+-.. -...+..+++....... +++++++.++
T Consensus 69 ~~~~~~~i~~~~~~~~~~~-----~~~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 69 GGRNARYLDAASPLLAFDF-----DPEAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCCcEEEEehHHhHHHHhh-----cccCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4557777777665443321 345678999999987433 34455556655544433 4666777554
No 290
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=73.55 E-value=6.4 Score=29.12 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=40.8
Q ss_pred cCCcEEEEcChH---------HHHHHhhC-CcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 50 EGANLLIGTPGR---------LYDIMERM-DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 50 ~~~~Iiv~TP~~---------l~~~l~~~-~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..+|+.+-.|.. +..+.... ..-.-...+.+|+||||.|-... ...+.+++..-|.+..+++.+....
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 357888777763 22233220 11112578899999999885543 5566666777777777777765544
No 291
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=73.31 E-value=6.2 Score=29.67 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
-...+++|+||+-..++.++ .+++..+++.-|...-+|+..-..|+.+...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 46788999999998888774 557788888888888899988888887777775
No 292
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=73.29 E-value=29 Score=30.40 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=41.5
Q ss_pred CCcEEEEcChHHHHHHhhC-----Ccc-----cCCcccEEEEecccccccc-ccHHHHHHHHHhCCC-CCcEEEEeecCc
Q 026925 51 GANLLIGTPGRLYDIMERM-----DVL-----DFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQT 118 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~-----~~~-----~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~-~~q~i~~SAt~~ 118 (230)
+..+++.|++.+...+... +.+ ...+.+.+|+||+|.+... ...+.+..+++.+.. ..|+++.|-..|
T Consensus 171 ~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 171 DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 5788888888876654320 111 1467899999999977543 245566666666543 345655544444
No 293
>PRK13766 Hef nuclease; Provisional
Probab=73.26 E-value=25 Score=33.01 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcC--------cchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG--------VEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~--------~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+||++.++.-|.++.+.+... ++++..+.|. .+..++ ...+..+..+++|+|. .. . .
T Consensus 368 vlIF~~~~~t~~~L~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~-~-e 435 (773)
T PRK13766 368 IIVFTQYRDTAEKIVDLLEKE-----GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS-----VA-E-E 435 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-h-c
Confidence 689999999999999888543 5566666664 222222 2334446789999997 22 2 4
Q ss_pred cccCCcccEEEEeccccccccccHHHHHHH
Q 026925 71 VLDFRNLEILVLDEADRLLDMGFQKQISYI 100 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad~l~~~~~~~~~~~i 100 (230)
.+++.+++++|+=+.+ +.+...++++
T Consensus 436 Gldi~~~~~VI~yd~~----~s~~r~iQR~ 461 (773)
T PRK13766 436 GLDIPSVDLVIFYEPV----PSEIRSIQRK 461 (773)
T ss_pred CCCcccCCEEEEeCCC----CCHHHHHHHh
Confidence 6788899999876654 3444444444
No 294
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=72.73 E-value=14 Score=31.20 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=46.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+++|+.-|..++..+++.. . +..+..++|.....+..+. .+.+|+|+|. .+. ..+++... .+|
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~--~-~~~~~~l~g~~~~~~R~~~---~~~~iLVaTd-----v~~--rGiDi~~~-~vi 340 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG--L-GDDIGRITGFAPKKDRERA---MQFDILLGTS-----TVD--VGVDFKRD-WLI 340 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC--C-CceEEeeecCCCHHHHHHh---ccCCEEEEec-----HHh--cccCCCCc-eEE
Confidence 7999999999999999888752 1 3566667776665544322 4688999998 333 35666554 555
Q ss_pred Ee
Q 026925 82 LD 83 (230)
Q Consensus 82 vD 83 (230)
+|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 54
No 295
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=71.87 E-value=19 Score=35.82 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=52.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhc-CCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEE-GANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+||++|++.-+.++.+.+++.. .+++.+..++|+-+..++...+... +-.||++|.- .. ..+.+.+++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNI-----AE--tSLTIpgV~yV 352 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNV-----AE--TSLTVPGIHYV 352 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccH-----HH--hccccCCeeEE
Confidence 6999999999988888887653 2357888899998888777766433 2589999982 22 45667777775
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 353 I 353 (1283)
T TIGR01967 353 I 353 (1283)
T ss_pred E
Confidence 5
No 296
>PLN03025 replication factor C subunit; Provisional
Probab=71.75 E-value=6.6 Score=32.55 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=26.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+|+||+|.|.... ...+.+++...+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 457899999999886543 455666666666556555543
No 297
>PRK01415 hypothetical protein; Validated
Probab=71.71 E-value=7.5 Score=31.06 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.+++++||.+=.+|+..+..|.+. |++ +..+.||+.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~----Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSI----GYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHc----CCCcEEEechHHH
Confidence 46679999999999999999999988 995 888888863
No 298
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=71.48 E-value=7.8 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
..++++++|++-.++...+..|.+. |++....-||+.
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~----G~~~v~~~GG~~ 93 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDM----GYTHAENAGGIK 93 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHc----CCCeEEecCCHH
Confidence 4568899999988999999999988 986444447754
No 299
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=71.17 E-value=9.5 Score=27.43 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=30.8
Q ss_pred EEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 166 YLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 166 ~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
|+...+......++.|+++. .+++++|+|.+.+.++.+-..|...
T Consensus 6 Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 6 FYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp EEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred EEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 55555555568888888754 6789999999999999999999876
No 300
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=71.16 E-value=22 Score=22.13 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=32.6
Q ss_pred eEEEeCCh-hhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcCh
Q 026925 2 GMIISPTR-ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~-eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~ 60 (230)
++++|++. .-+..+...+++..+.. ++....-..+.... ....++|++++|+.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQGLSEV-----IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEcccchh-----hhcCCccEEEECCc
Confidence 67888887 56666677777776554 44333322222110 22477999999996
No 301
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=71.08 E-value=6.6 Score=37.11 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+++||||+|.|-..+ ...+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999886543 344555566666666666654
No 302
>PRK06526 transposase; Provisional
Probab=71.07 E-value=15 Score=29.49 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=41.1
Q ss_pred hcCCcEEEEcChHHHHHHhhC---Ccc-----cCCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 49 EEGANLLIGTPGRLYDIMERM---DVL-----DFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~---~~~-----~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..+..+++.|...+..-+... +.+ .+.+.+++|+||++..... .-...+..+++.......+++.|..-+
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 456788888777666555320 111 2567889999999976432 223445566654433445666555533
No 303
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.90 E-value=5.4 Score=35.50 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=26.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+||||+|.|....+ ..+.+.+...|....+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998765443 44455566666666666644
No 304
>PRK06835 DNA replication protein DnaC; Validated
Probab=70.84 E-value=62 Score=27.11 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHhhhhCC-CceEEEEEcCc--chHHHH----HHHHhcCCcEEEEcChHHHHHHhhC---Cc-------
Q 026925 9 RELSSQIYHVAQPFISTLP-DVKSVLLVGGV--EVKADV----KKIEEEGANLLIGTPGRLYDIMERM---DV------- 71 (230)
Q Consensus 9 ~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~--~~~~~~----~~l~~~~~~Iiv~TP~~l~~~l~~~---~~------- 71 (230)
++-..++...++.+...+. .-....+.|.. -+..-. ..+...+..|++.|...+...+... ..
T Consensus 162 ~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~ 241 (329)
T PRK06835 162 RKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVY 241 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHH
Confidence 4555666666666666431 12445555532 222211 1233467889998888877655330 11
Q ss_pred ccCCcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCch
Q 026925 72 LDFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTE 119 (230)
Q Consensus 72 ~~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~ 119 (230)
-.+.++++||+|+........ ....+..|++..-. ...+++ |+.+++
T Consensus 242 ~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~ 290 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII-STNLSL 290 (329)
T ss_pred HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCH
Confidence 125688999999998764333 24455666655433 344444 555543
No 305
>PLN02160 thiosulfate sulfurtransferase
Probab=70.74 E-value=7.4 Score=27.89 Aligned_cols=37 Identities=11% Similarity=-0.081 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..++++++|.+=.++...+..|... |++ +..+.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~----G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAA----GYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHc----CCCCeeecCCcHH
Confidence 4578999999999999999999887 885 777888864
No 306
>PHA02558 uvsW UvsW helicase; Provisional
Probab=70.60 E-value=24 Score=31.29 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=47.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
.+|++...+=+..+...+++. +.++..++|+.+..+....+ ..+...++|+|-..+ . ..++..+++
T Consensus 347 ~lV~~~~~~h~~~L~~~L~~~-----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l----~--eG~Dip~ld 415 (501)
T PHA02558 347 TFVMFKYVEHGKPLYEMLKKV-----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF----S--TGISIKNLH 415 (501)
T ss_pred EEEEEEEHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee----c--ccccccccc
Confidence 477787777666666666553 57888999987765444322 224457899987533 2 467888999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|+.
T Consensus 416 ~vIl~ 420 (501)
T PHA02558 416 HVIFA 420 (501)
T ss_pred EEEEe
Confidence 99864
No 307
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=70.33 E-value=13 Score=28.33 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=42.5
Q ss_pred CcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 75 RNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
.+.+++|+||.-..+..++ .+.+..+++.-|....+|+..-..++.+.+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 4688999999999988874 5577777887788888888877788887777764
No 308
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=70.18 E-value=6.6 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=30.2
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhhh----hcc----CCc-eEEeccCCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPRL----AVL----KSL-SLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~~----~~~----~g~-~~~~lh~~~~~ 227 (230)
+.++++++|. +-.++...+..|... ... .|+ ++..+.||+..
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 5678999997 877888888888763 000 155 68899998753
No 309
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=70.00 E-value=13 Score=28.18 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=33.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
.+.+++|.|+++..+.+....+.......+.++..++|+.+.
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSI 109 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCH
Confidence 456899999999999998888777644457888889998764
No 310
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=69.86 E-value=43 Score=30.77 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..+..+++..++ +++||++|.+..+.++..+...
T Consensus 469 ~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~ 502 (654)
T COG1199 469 AYLREILKASPG-GVLVLFPSYEYLKRVAERLKDE 502 (654)
T ss_pred HHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhc
Confidence 344444444454 8999999999999999999876
No 311
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.15 E-value=6.3 Score=36.78 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=24.7
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+++||||+|.|....+.. +.+++..-+.+..+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEE
Confidence 457899999999886544333 444455555555555543
No 312
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=68.61 E-value=23 Score=25.65 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+..+++|.|+++.-++.....+.+.....+.+...+||+.+
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQS 83 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSC
T ss_pred CCceEEEEeeccccccccccccccccccccccccccccccc
Confidence 44599999999999999999999886445678899999876
No 313
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.58 E-value=7.9 Score=35.56 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=26.1
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
..+.+.+||||+|.|....+. .+.+.+..-+.+..+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 356789999999988655443 33334444455666776654
No 314
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=67.83 E-value=5.9 Score=37.47 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=35.8
Q ss_pred EEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 54 LLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 54 Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
|+++|-+-+++++.. + +..+.++++||.|...-. .|.-.+.+=+....+...++++|||+.
T Consensus 475 i~fctvgvllr~~e~-g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 475 IMFCTVGVLLRMMEN-G---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred eeeeccchhhhhhhh-c---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 666777777777665 3 566789999999966432 244433332322333445555555554
No 315
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.28 E-value=28 Score=32.45 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
-++.+|||++|....+.++..+.+.
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~ 545 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEM 545 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhc
Confidence 3468999999999999988887653
No 316
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=67.13 E-value=6.8 Score=26.50 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..++++++|.+-..+...+..|... |+. +..+.||++
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~----G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQ----GFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHC----CchheEEecCCHH
Confidence 4568999999988888999899888 885 777888764
No 317
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=66.85 E-value=41 Score=34.24 Aligned_cols=76 Identities=9% Similarity=0.153 Sum_probs=49.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhC----------------------------CCceEEEEEcCcchHHHHH---HHHhc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTL----------------------------PDVKSVLLVGGVEVKADVK---KIEEE 50 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~----------------------------~~~~v~~~~~~~~~~~~~~---~l~~~ 50 (230)
+||+++||..|..+...+++..... +...+...+|+.+.++... .+.++
T Consensus 247 tLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G 326 (1490)
T PRK09751 247 TIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSG 326 (1490)
T ss_pred EEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhC
Confidence 6899999999999998888764210 0012344557766554333 44567
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEec
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDE 84 (230)
...++|+|.. +. -.+++..++++|.=+
T Consensus 327 ~LrvLVATss-----LE--LGIDIg~VDlVIq~g 353 (1490)
T PRK09751 327 ELRCVVATSS-----LE--LGIDMGAVDLVIQVA 353 (1490)
T ss_pred CceEEEeCcH-----HH--ccCCcccCCEEEEeC
Confidence 7899999973 22 346777788877533
No 318
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.82 E-value=6.4 Score=38.83 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=55.8
Q ss_pred hcCCcEEEEcChHHHHHHhh-CC-------------cccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 49 EEGANLLIGTPGRLYDIMER-MD-------------VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~-~~-------------~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..|..|.+.-|++=..-+.. +| .+.....-+.|+||+|..+|......+-.++..+....|+|+.|
T Consensus 1047 ~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIT 1126 (1163)
T COG1196 1047 TAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126 (1163)
T ss_pred hcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 46778888888874432211 11 11245556899999999999998999999999999999999974
Q ss_pred ecCchHHHHHHHhcc
Q 026925 115 ATQTEAVEELSKAGL 129 (230)
Q Consensus 115 At~~~~~~~~~~~~~ 129 (230)
..+.+...+...+
T Consensus 1127 --hr~~~m~~ad~l~ 1139 (1163)
T COG1196 1127 --HRKGTMEAADRLV 1139 (1163)
T ss_pred --cChHHHHHHHHHe
Confidence 4455555555543
No 319
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=66.44 E-value=5.9 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=27.3
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
-++++|+||||.|-.. ....+++.......+..++..+
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii~ 168 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATIS 168 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEec
Confidence 6889999999998543 2455667777777777666544
No 320
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=65.69 E-value=58 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEEeec
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~SAt 116 (230)
+.+.+.+|||||-.+. ...+..++...+. ..+++++.=.
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4556899999999763 3456667777765 5666666443
No 321
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=64.90 E-value=10 Score=28.14 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCchh-HHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCA-CVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.+++++||++-. .+...+..|... |++ +..+.||+.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~----G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAY----GYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhc----CCcceEEecCCHH
Confidence 35679999999854 677788888887 885 788889874
No 322
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=64.84 E-value=46 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCcEEEEcChHHHHHHhh---CCc---c--cCCcccEEEEeccccccccc-cHHHHHHHHHhCC-CCCcEEEEeecCc
Q 026925 51 GANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQT 118 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~---~~~---~--~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~-~~~q~i~~SAt~~ 118 (230)
+..+++.|.+.+...+.. .+. + .+.+.+++++||+|.+.... ....+.+++..+. ...++++ +++.+
T Consensus 166 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~ 242 (405)
T TIGR00362 166 NAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRP 242 (405)
T ss_pred CCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCC
Confidence 467888887765432211 011 1 14567899999999876542 2334555555443 3455555 55543
No 323
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=63.97 E-value=9 Score=25.67 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.0
Q ss_pred CCCeEEEEcCchhHHHHHHHH-----hhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVV-----LPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~-----L~~~~~~~g~-~~~~lh~~~~ 226 (230)
...++++||++-......+.. |... |+ ++..+.||+.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~----g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKL----GFKNVYILDGGFE 108 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHT----TTSSEEEETTHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHc----CCCCEEEecChHH
Confidence 556789999766666666655 6665 88 8888888864
No 324
>PF13245 AAA_19: Part of AAA domain
Probab=63.66 E-value=15 Score=23.33 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEcCCCCcHHHHHHHHHhC------CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccC
Q 026925 167 LECEPDEKPSQLVDLLIKN------KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHG 223 (230)
Q Consensus 167 ~~~~~~~k~~~l~~ll~~~------~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~ 223 (230)
...+...|...+...+... .++++++.+.|+.-++++...+ .. |.. +..+|+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~----~~~~~~T~h~ 74 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GL----GVPFAMTIHS 74 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cC----CCcchhhHHH
Confidence 4445567875555554422 2779999999999999999998 32 454 777775
No 325
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.45 E-value=13 Score=28.87 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=23.3
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.++|+|||..+ -...++.++.++..+.++++..-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 78999999986 356778889999888888776433
No 326
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=63.36 E-value=28 Score=32.15 Aligned_cols=100 Identities=10% Similarity=0.127 Sum_probs=54.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhC-CCceEEEEEcCcchHHHHHHHHhcC-CcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTL-PDVKSVLLVGGVEVKADVKKIEEEG-ANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~-~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+++.+|.+.-++.+++.+......+ ++-.+-...| ... .-.+.+++ .-|.++|- .+++..+=...++
T Consensus 287 IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDL 355 (738)
T PHA03368 287 IGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNL 355 (738)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEec-------cCCCCccCCcccE
Confidence 5788999999999999988876643 2211211122 110 00111111 24555422 1112233357889
Q ss_pred EEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeec
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSAT 116 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt 116 (230)
+|+|||+-+-+.. +..++-.+. .+.+++..|.|
T Consensus 356 LIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 356 LFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred EEEechhhCCHHH----HHHHHHHHhccCccEEEEecC
Confidence 9999999664433 333333332 37888888877
No 327
>PF13514 AAA_27: AAA domain
Probab=63.35 E-value=16 Score=35.97 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=45.1
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
||+|++=.-+|......+..++..+....|+|+||.. +++-.+++..+++.+.|
T Consensus 1055 ~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch--~~l~~~a~~~~~~~v~v 1108 (1111)
T PF13514_consen 1055 FILDDIFVNFDDERARAALELLAELSRRRQVIYFTCH--EHLVELAREVFGDRVNV 1108 (1111)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEecc--HHHHHHHHHhcCCCCce
Confidence 8999998778888888899999999999999999766 88888888876655543
No 328
>PF15586 Imm47: Immunity protein 47
Probab=63.34 E-value=7.9 Score=27.03 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=26.0
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad 86 (230)
...++.|+||+.|.+.... +.+ +-.=.+||++|.+
T Consensus 43 d~F~v~VcTP~wL~~~~~~-~~~-~~gr~~LIv~~yd 77 (116)
T PF15586_consen 43 DYFQVFVCTPKWLSKNCWK-PGI-LWGRHMLIVEEYD 77 (116)
T ss_pred ceEEEEEEcHHHHHHhhcC-Ccc-eeccceEEEecCC
Confidence 3478999999999887765 322 2334689999987
No 329
>PRK08181 transposase; Validated
Probab=62.97 E-value=43 Score=27.15 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=41.3
Q ss_pred hcCCcEEEEcChHHHHHHhh---CCcc-----cCCcccEEEEeccccccccc-cHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 49 EEGANLLIGTPGRLYDIMER---MDVL-----DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~---~~~~-----~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..+..+++.|...+...+.. ...+ .+.+.+++|+||.+...... -...+..+++.......+++ ++.++
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~Ii-TSN~~ 209 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILI-TANQP 209 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEE-EcCCC
Confidence 45677888877666665432 0111 25778999999999764332 34456666665544444554 45544
No 330
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=62.85 E-value=7.1 Score=36.65 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=27.2
Q ss_pred cCCcEEEEcChHHHHH-HhhCCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDI-MERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~-l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+|||++-..-|.+- +++...+++++ ..+|+||||.|-+
T Consensus 221 edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 221 EDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred ccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 4589999977766554 33323355544 4799999999864
No 331
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=62.60 E-value=18 Score=28.22 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=44.3
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
..+-+.+|+||.=.=+|......+..++.++.+....++||...-.+++.+...
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 456789999998776676677888888999988889999999888788877764
No 332
>PRK10536 hypothetical protein; Provisional
Probab=62.26 E-value=14 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=26.2
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.++|+|||+.+- ...+..++.+++.+.++++..
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCCCCEEEEeC
Confidence 799999999862 367778888888888877753
No 333
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=62.20 E-value=55 Score=28.33 Aligned_cols=117 Identities=14% Similarity=0.215 Sum_probs=68.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch--HHHHHHH----Hh--cCCcEEEEcChHHHHH-H---hhCC
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV--KADVKKI----EE--EGANLLIGTPGRLYDI-M---ERMD 70 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~l----~~--~~~~Iiv~TP~~l~~~-l---~~~~ 70 (230)
.|+.|+-.+|.-....+....+. ......+.|+.-. ..-...+ .. .++.++..|.+.+..- + +.+.
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~--~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~ 166 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGG--AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNE 166 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCC--cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhh
Confidence 46778888877666666554322 2456667765442 2211111 11 2357888899886432 2 1101
Q ss_pred --cc--cCCcccEEEEecccccccc-ccHHHHHHHHHhCCCC-CcEEEEeecCchHHH
Q 026925 71 --VL--DFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKL-RRTGLFSATQTEAVE 122 (230)
Q Consensus 71 --~~--~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~-~q~i~~SAt~~~~~~ 122 (230)
.| .. ++++++||+++.+..+ ...+.+-++++.+... .|+++.|...|.++.
T Consensus 167 ~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 167 MEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 01 12 7999999999988655 3566777777777644 377777766665544
No 334
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=61.97 E-value=14 Score=30.68 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.+++++||.+=.+++..+.+|.+. |++ +..+.||+.
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~----Gf~~V~~L~GGi~ 207 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHE----GFKEVYQLEGGII 207 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHc----CCCcEEEecchHH
Confidence 46689999999999999999999987 995 888999864
No 335
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.77 E-value=35 Score=21.89 Aligned_cols=52 Identities=6% Similarity=0.085 Sum_probs=29.8
Q ss_pred eEEEeCChh-hHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcCh
Q 026925 2 GMIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~e-La~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~ 60 (230)
++++||+.- ....+...+++..+.. ++....-..+... ....++|++++|..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~~~------~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDLGS------AKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecccc------cCCCCCCEEEEchh
Confidence 688998843 4455555676666554 4443322222211 11357899999995
No 336
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.77 E-value=33 Score=30.23 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=51.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
.+|.+-|+.-|.++...+... ++....++|+....++.. .+.++.++++|+|.- .. ..++.++++
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~V-----aa--RGlDi~~V~ 407 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNV-----AA--RGLDIPNVK 407 (482)
T ss_pred EEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehh-----hh--cCCCCCCCc
Confidence 478889998888877766654 567777887766554444 344578999999973 22 578999999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.=+
T Consensus 408 hVInyD 413 (482)
T KOG0335|consen 408 HVINYD 413 (482)
T ss_pred eeEEee
Confidence 998544
No 337
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=61.23 E-value=39 Score=21.80 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred eEEEeCChh-hHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcCh
Q 026925 2 GMIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~e-La~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~ 60 (230)
++++||+.- ....+...+++..+.. ++....-..+. .+.... ..++|++++|+.
T Consensus 3 ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~---~~~~~~-~~~~Dliist~~ 57 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKI---AEVPSL-LDDADLIVSTTK 57 (89)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecH---HHhhcc-cCCCcEEEEcCC
Confidence 678888843 3344555555555443 44322211111 111112 367999999996
No 338
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.02 E-value=19 Score=24.78 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.3
Q ss_pred ccEEEEeccccccccc
Q 026925 77 LEILVLDEADRLLDMG 92 (230)
Q Consensus 77 l~~lVvDEad~l~~~~ 92 (230)
-..+++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999997654
No 339
>PHA02533 17 large terminase protein; Provisional
Probab=60.81 E-value=32 Score=30.90 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=53.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++++|+++-|..+++.++.+....|...-..+.... ...-.+ ..+..|.+.|-.. +..+. .+..+++
T Consensus 107 v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~---~~~I~l-~NGS~I~~lss~~--~t~rG------~~~~~li 174 (534)
T PHA02533 107 VGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWN---KGSIEL-ENGSKIGAYASSP--DAVRG------NSFAMIY 174 (534)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecC---ccEEEe-CCCCEEEEEeCCC--CccCC------CCCceEE
Confidence 6789999999999999998877666542111111110 000111 3455555544321 11222 3456899
Q ss_pred EeccccccccccHHHHHHHHHhCCC--CCcEEEEeecC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQ 117 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~ 117 (230)
+||+|.+-+. .+.+..+...+.. ..+++.+|+.-
T Consensus 175 iDE~a~~~~~--~e~~~ai~p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 175 IDECAFIPNF--IDFWLAIQPVISSGRSSKIIITSTPN 210 (534)
T ss_pred EeccccCCCH--HHHHHHHHHHHHcCCCceEEEEECCC
Confidence 9999976442 2333333333322 23456666554
No 340
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=60.70 E-value=67 Score=29.99 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 178 LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 178 l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+.+++. ..+.++||++|.+..+.++..|...
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~ 557 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRD 557 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh
Confidence 334444 3345899999999999999998754
No 341
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=60.64 E-value=10 Score=25.36 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEE-eccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLI-PLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~-~lh~~~~ 226 (230)
...++++|+|.+=.+....+..|.+. |+... .+.||+.
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~----G~~~~~~l~gG~~ 97 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLA----GFTNVYNLDGGID 97 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHc----CCccccccCCcHH
Confidence 45679999999999999999999998 88876 7777763
No 342
>PRK06620 hypothetical protein; Validated
Probab=60.54 E-value=13 Score=28.92 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=48.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc--chHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV--EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.|+.++.+.|......+.+--...|.-+...++|.. -+..-...+ ...+...+.+...... . ...+.+.+
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~-~~~~~~~~~~~~~~~~---~----~~~~~d~l 89 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIW-QNLSNAYIIKDIFFNE---E----ILEKYNAF 89 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHH-HhccCCEEcchhhhch---h----HHhcCCEE
Confidence 356776666655444443210111101445666532 233333222 3334444433222111 0 12345789
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
++||+|.+- ...+-++.+.+......+++||+-++
T Consensus 90 liDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 90 IIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred EEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 999999541 13455566666544444555565443
No 343
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=60.34 E-value=48 Score=30.38 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
....+++||||+-++ + .+.+..+++.++...++|++.=.
T Consensus 263 ~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 263 PLHLDVLVVDEASMV-D---LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCCCeEEEChHhcc-c---HHHHHHHHHhcccCCEEEEecch
Confidence 345689999999955 3 45566678888888888776543
No 344
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=60.15 E-value=12 Score=28.18 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
...-+.+||||+|.+.... ...+...+...+...-+++.
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 4667899999999985432 33344444444444444444
No 345
>PRK04132 replication factor C small subunit; Provisional
Probab=60.11 E-value=22 Score=33.76 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=26.4
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
+.+.+|+||||.|-.. ....+.+++...+....+++.+
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi~ 667 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 667 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEEe
Confidence 4689999999988543 3556666676666666666653
No 346
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=59.76 E-value=81 Score=29.09 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
..+.++++..+ ++++|.+.|.+..+.++..|...+ .+++ .+.|+.
T Consensus 460 ~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l---~~~~-l~qg~~ 504 (636)
T TIGR03117 460 LSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGI---PAEI-VIQSEK 504 (636)
T ss_pred HHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhc---CCCE-EEeCCC
Confidence 44455554444 489999999999999999997653 3443 344544
No 347
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.74 E-value=17 Score=33.55 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=25.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+||||+|+|.... ...+..++...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 456899999999775443 344555566656566566543
No 348
>PRK01172 ski2-like helicase; Provisional
Probab=59.60 E-value=42 Score=31.04 Aligned_cols=79 Identities=8% Similarity=0.181 Sum_probs=48.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCC--------------------ceEEEEEcCcchHHHHH---HHHhcCCcEEEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPD--------------------VKSVLLVGGVEVKADVK---KIEEEGANLLIG 57 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~--------------------~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~ 57 (230)
.+||++||+.-+..+...+.+.....+. ..+...+++-+..++.. .+.++...|+|+
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 3789999999888888777665332111 13556677766554433 233567899999
Q ss_pred cChHHHHHHhhCCcccCCcccEEEEecccc
Q 026925 58 TPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (230)
Q Consensus 58 TP~~l~~~l~~~~~~~~~~l~~lVvDEad~ 87 (230)
|.- +. ..+++.. ..+|++....
T Consensus 318 T~~-----la--~Gvnipa-~~VII~~~~~ 339 (674)
T PRK01172 318 TPT-----LA--AGVNLPA-RLVIVRDITR 339 (674)
T ss_pred cch-----hh--ccCCCcc-eEEEEcCceE
Confidence 973 22 2344443 4667765543
No 349
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.39 E-value=32 Score=28.09 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=26.2
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
...+.+++||+|.+... ....+..+++..+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999988543 2445666666666666666654
No 350
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=58.84 E-value=16 Score=26.18 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=31.5
Q ss_pred HHHHHHHhC---CCCeEEEEcCc---hhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 177 QLVDLLIKN---KSKKIIIYFMT---CACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~---~~~~~lIF~~t---~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+..++... ...+++|||++ -..|-+++-.|... |++ +..+-||++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~----G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLC----GHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHc----CCCCeEEeCCCHH
Confidence 455555543 56799999986 44566677677666 775 778888764
No 351
>PRK04195 replication factor C large subunit; Provisional
Probab=58.40 E-value=1.3e+02 Score=26.54 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhhhhCCCceEEEEEcCcc--hHHHHHHHH-hcCCcEEEEcCh------HHHHHHhhC-Cccc-C-Ccc
Q 026925 10 ELSSQIYHVAQPFISTLPDVKSVLLVGGVE--VKADVKKIE-EEGANLLIGTPG------RLYDIMERM-DVLD-F-RNL 77 (230)
Q Consensus 10 eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~l~-~~~~~Iiv~TP~------~l~~~l~~~-~~~~-~-~~l 77 (230)
+...++..++..+.... ..+...++|..- +..-...+. .-+.+++..++. .+...+... .... + .+-
T Consensus 21 ~~~~~l~~~l~~~~~g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~ 99 (482)
T PRK04195 21 KAKEQLREWIESWLKGK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARR 99 (482)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCC
Confidence 34455666666654332 245666666322 332333332 234566666542 222333220 0111 2 256
Q ss_pred cEEEEeccccccc
Q 026925 78 EILVLDEADRLLD 90 (230)
Q Consensus 78 ~~lVvDEad~l~~ 90 (230)
++|||||+|.+..
T Consensus 100 kvIiIDEaD~L~~ 112 (482)
T PRK04195 100 KLILLDEVDGIHG 112 (482)
T ss_pred eEEEEecCccccc
Confidence 7999999999865
No 352
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=58.37 E-value=9.4 Score=33.34 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCcEEEEcChHHHHHHhh---CCc---c--cCCcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCch
Q 026925 51 GANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTE 119 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~---~~~---~--~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~ 119 (230)
+..+++.|.+.+..-+.. .+. + .+.+.+++++||+|.+.... ....+.+++..+.. ..++++ +++.++
T Consensus 178 ~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii-ts~~~p 255 (450)
T PRK00149 178 NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL-TSDRPP 255 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE-ECCCCH
Confidence 466887777765432211 011 1 24568899999999876532 23455555555433 345555 555443
No 353
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=58.18 E-value=7.3 Score=34.63 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.4
Q ss_pred CCcccEEEEeccccccccccHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQIS 98 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~ 98 (230)
..+.+.+||||+|++....|...++
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLK 141 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLK 141 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhc
Confidence 5778999999999776555555433
No 354
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=58.16 E-value=14 Score=28.15 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=24.8
Q ss_pred cccEEEEeccccccccc-cH----HHHHHHHHhCCCCC-cEEEEeecCchHHHHHHHh
Q 026925 76 NLEILVLDEADRLLDMG-FQ----KQISYIISRLPKLR-RTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~-~~----~~~~~i~~~l~~~~-q~i~~SAt~~~~~~~~~~~ 127 (230)
.=.++|+||||..+... .. +..-..+...++.. -+++.|-. +..+....+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 45689999999988643 21 22223344444433 35554444 3445555554
No 355
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=57.88 E-value=15 Score=31.11 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=26.1
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
...+.+||||||.|.... ...+...+...+.+..++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 567899999999885443 344555556555566666664
No 356
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.58 E-value=1.2e+02 Score=25.66 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc--CCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~~l 80 (230)
+.+.-|..-|.|+...++.-+ +.+.+.+.......+........++.+=+---+.....+..+-.++ .+++.-
T Consensus 7 vLllGtGpvaIQlAv~l~~h~----d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~- 81 (431)
T COG4408 7 VLLLGTGPVAIQLAVDLSAHG----DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ- 81 (431)
T ss_pred eeEeecCcHHHHHHHHHHhcc----CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH-
Confidence 455667778889888888754 4577776665555555555555666666654444456665422222 122222
Q ss_pred EEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCchH--HHHHHHhccCCCeEEEEec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~ 139 (230)
+.||.+.++-.--.+.+...++.++ .-..+++.|+|+..+ +..++.+.-.+...|.+..
T Consensus 82 ~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~Ss 147 (431)
T COG4408 82 AVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSS 147 (431)
T ss_pred hhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeeh
Confidence 3466665543223444444555554 456789999999876 5566666666766666533
No 357
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.15 E-value=12 Score=32.96 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=13.7
Q ss_pred CcccEEEEeccccccccc
Q 026925 75 RNLEILVLDEADRLLDMG 92 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~ 92 (230)
.+.+.+||||+|.|-...
T Consensus 120 g~~KV~IIDEah~Ls~~A 137 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS 137 (484)
T ss_pred CCCEEEEEechhhcCHHH
Confidence 356799999999875443
No 358
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.13 E-value=23 Score=32.23 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=25.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||+|.|.... ...+...+...|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3567899999999875543 333444455555555555544
No 359
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=57.03 E-value=37 Score=31.80 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=37.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH-------hcCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE-------EEGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~Iiv~TP 59 (230)
++||+.|..-|..++..++... . ++..+++.-......+... .+.+.|+|+|.
T Consensus 443 vlvI~NTV~~Aie~Y~~Lk~~~----~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 443 VLVIVNTVDRAIELYEKLKEKG----P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred EEEEEecHHHHHHHHHHHHhcC----C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 6899999999999999998864 2 6788887665543333332 24566666664
No 360
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=56.96 E-value=64 Score=31.25 Aligned_cols=25 Identities=8% Similarity=0.095 Sum_probs=21.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..+++|||++|.+..+.++..|...
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~ 775 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNE 775 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhc
Confidence 4458999999999999999999765
No 361
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=56.76 E-value=17 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=18.7
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l 104 (230)
..+...+++||+|.+... ....+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~~-~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRG-AQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhHH-HHHHHHHHHHhc
Confidence 456689999999987322 334444444444
No 362
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=56.58 E-value=34 Score=24.87 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=37.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 165 EYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 165 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.|+...+..-.+.++.|+++. .+.|++|-|.+...+++|-..|-..
T Consensus 5 ~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 5 TFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred EEEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 355555555556889999865 7789999999999999999999876
No 363
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=56.53 E-value=17 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||||.|.... ...+...+...|....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3677899999999885443 444555566666677777654
No 364
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.51 E-value=18 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=23.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+||||+|.|....+. .+.+.+..-|....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 56789999999988654433 2333344444455555543
No 365
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.50 E-value=17 Score=33.64 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=25.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+++||||+|.|.... ...+.+++...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 567899999999765433 334555555556666666654
No 366
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=56.44 E-value=25 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=36.1
Q ss_pred HHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+..++.+. ..+++++||++=..|-.++..|... |++ +..+.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~----G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATL----DVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc----CCCCceeeCCCHH
Confidence 4555555532 5568999999999999999999866 885 788888764
No 367
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.09 E-value=19 Score=30.53 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=24.0
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+|+||+|.+....+ ..+...+...|....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4568999999998864433 23344444445555566643
No 368
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=56.00 E-value=38 Score=30.32 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=54.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~l 80 (230)
..|++|+.+=+.+.++.++......++++.. ..+...+..|..+--......+.. .+..+=.+-.+.
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~ 188 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGA 188 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCCcccCCCcceE
Confidence 4688999999988888888877655322211 011011112333322222222222 244555667789
Q ss_pred EEeccccccccccHHHHHHHHHhCC--CCCcEEEEee
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSA 115 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SA 115 (230)
|+||.|..-..+ .-+..+..-+. ++.+++..|.
T Consensus 189 I~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 189 IIDELHLFGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred EEehhhhhcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 999999765553 44444444442 4556666654
No 369
>PRK04296 thymidine kinase; Provisional
Probab=55.65 E-value=17 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=28.5
Q ss_pred EEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 56 v~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
+..+..+.+.+.. .-.+.+++|+||++.+ + .+.+..+.+.+.+....+.+++-
T Consensus 62 ~~~~~~~~~~~~~----~~~~~dvviIDEaq~l-~---~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 62 VSSDTDIFELIEE----EGEKIDCVLIDEAQFL-D---KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred eCChHHHHHHHHh----hCCCCCEEEEEccccC-C---HHHHHHHHHHHHHcCCeEEEEec
Confidence 3444445444432 2346789999999754 2 23345555554444444444444
No 370
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.51 E-value=23 Score=31.48 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCcEEEEcCh------HHHHHHhhCCcc-cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 51 GANLLIGTPG------RLYDIMERMDVL-DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 51 ~~~Iiv~TP~------~l~~~l~~~~~~-~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
.+|++-..+. .+..++..-... ...+.+.+||||+|.|....+ ..+...+..-|....+++.
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILA 152 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEE
Confidence 3566766553 244444321111 136788999999997754433 3334444444455555554
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.26 E-value=14 Score=33.05 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||+|.|....+ ..+...+...|....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865433 33444455555566666654
No 372
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.53 E-value=47 Score=29.94 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=65.1
Q ss_pred CceEEEEEcC-----cchHHHHHHHHhcCCcEEEEcChHHHHHHhhC----------------CcccCCcccEEEEeccc
Q 026925 28 DVKSVLLVGG-----VEVKADVKKIEEEGANLLIGTPGRLYDIMERM----------------DVLDFRNLEILVLDEAD 86 (230)
Q Consensus 28 ~~~v~~~~~~-----~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~----------------~~~~~~~l~~lVvDEad 86 (230)
.++-..++|- +-..+++-...+.+..=||--|+-|.+++..+ ..-.-+.+..+|+||+|
T Consensus 255 HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 255 HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 4555566652 22345555555555455667798888877432 11225789999999999
Q ss_pred ccccc--------c-cHHHHHHHHHhCC-----CCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 87 RLLDM--------G-FQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 87 ~l~~~--------~-~~~~~~~i~~~l~-----~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
.++.. | .-..+..++.++. ++.-+|+++.. ..+...-+-.|.-..+.-+
T Consensus 335 AICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-----~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-----KDLIDEALLRPGRLEVQME 397 (744)
T ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc-----hhhHHHHhcCCCceEEEEE
Confidence 99842 1 4456677777775 24556666433 4455555666665554444
No 373
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.50 E-value=19 Score=34.37 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=24.8
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
.+.+.+||||+|.|-... ...+.+++..-|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999885433 34444555555556666664
No 374
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=54.46 E-value=20 Score=33.43 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
...+++|||||+++- ...+..+++.++...+++++.-.
T Consensus 415 ~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECcc
Confidence 457899999999663 33456677788878888876543
No 375
>PF12846 AAA_10: AAA-like domain
Probab=54.07 E-value=16 Score=29.30 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=22.1
Q ss_pred CcccEEEEecccccccc-ccHHHHHHHHHhCCC
Q 026925 75 RNLEILVLDEADRLLDM-GFQKQISYIISRLPK 106 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~ 106 (230)
..-..+++||||.++.. .....+..+.+..++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk 251 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRK 251 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHh
Confidence 44567899999999876 345555666666543
No 376
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.93 E-value=19 Score=30.43 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||++-.++.+.+..|... |++ +..+.||+.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~----G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERA----GYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc----CCCCEEEecCcHH
Confidence 4568999999988999999999888 886 778899874
No 377
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=53.93 E-value=47 Score=22.51 Aligned_cols=56 Identities=13% Similarity=0.000 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 171 PDEKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 171 ~~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...|......++. ....++++|+|+++..++.....+...... +.+...++++...
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSI 69 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcch
Confidence 3456544444433 335689999999999999999998887421 4677777776543
No 378
>CHL00181 cbbX CbbX; Provisional
Probab=53.86 E-value=23 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=27.0
Q ss_pred cEEEEecccccccc----ccHH-HHHHHHHhCCC-CCcEEEEeecCchHHHHHH
Q 026925 78 EILVLDEADRLLDM----GFQK-QISYIISRLPK-LRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 78 ~~lVvDEad~l~~~----~~~~-~~~~i~~~l~~-~~q~i~~SAt~~~~~~~~~ 125 (230)
..+++||+|.+... ++.. ....++..+.. ...++++-|+.++.+..+.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 68999999988532 1333 33444444432 2234555577776665444
No 379
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=53.72 E-value=38 Score=23.03 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCch-----hHHHHHHHHhhhhhccCCc---eEEeccCCCCC
Q 026925 185 NKSKKIIIYFMTC-----ACVDYWGVVLPRLAVLKSL---SLIPLHGKMKQ 227 (230)
Q Consensus 185 ~~~~~~lIF~~t~-----~~~~~l~~~L~~~~~~~g~---~~~~lh~~~~~ 227 (230)
.+..+++++|.+. ..+..+...+.+. |+ ++..+-||+..
T Consensus 64 ~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~----G~~~~~v~~l~GG~~~ 110 (113)
T cd01443 64 AGVKLAIFYCGSSQGRGPRAARWFADYLRKV----GESLPKSYILTGGIKA 110 (113)
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHhcc----CCCCCeEEEECChhhh
Confidence 3457899999752 2344555556555 65 67778888753
No 380
>PRK08116 hypothetical protein; Validated
Probab=53.36 E-value=60 Score=26.20 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=38.5
Q ss_pred cCCcEEEEcChHHHHHHhhC----C------cc-cCCcccEEEEeccccc--cccccHHHHHHHHHhCC-CCCcEEEEee
Q 026925 50 EGANLLIGTPGRLYDIMERM----D------VL-DFRNLEILVLDEADRL--LDMGFQKQISYIISRLP-KLRRTGLFSA 115 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~----~------~~-~~~~l~~lVvDEad~l--~~~~~~~~~~~i~~~l~-~~~q~i~~SA 115 (230)
.+..+++.+...+...+... . .+ .+.+.++||+||++.- -+|. ...+..|++... ....+|+.|.
T Consensus 141 ~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 141 KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECC
Confidence 45667777766655554320 0 01 2678899999999643 2332 344555665543 3345666554
Q ss_pred cCchH
Q 026925 116 TQTEA 120 (230)
Q Consensus 116 t~~~~ 120 (230)
.-+.+
T Consensus 220 ~~~~e 224 (268)
T PRK08116 220 LSLEE 224 (268)
T ss_pred CCHHH
Confidence 44433
No 381
>PRK10869 recombination and repair protein; Provisional
Probab=53.31 E-value=20 Score=32.39 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=33.1
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
+..++|+||.|.-++......+..++..+....|+++ .|..+.+
T Consensus 452 ~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~--iTH~~~~ 495 (553)
T PRK10869 452 ETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMC--VTHLPQV 495 (553)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEE--EecCHHH
Confidence 5689999999999988888888888888866666555 4444443
No 382
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=53.31 E-value=26 Score=26.88 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccCCcccEEEEeccc
Q 026925 9 RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLEILVLDEAD 86 (230)
Q Consensus 9 ~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~~~l~~lVvDEad 86 (230)
.++|+.+...+.+....- +.-+..+.||. ||..+.+.+... ..++++++.++.+||-.
T Consensus 3 ~~~a~~i~~~i~~~i~~~-~~~~i~LsgGs-------------------tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER-GRAVIALSGGS-------------------TPKPLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSEEEEE--SC-------------------THHHHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-------------------HHHHHHHHHhhhccccCChhHeEEEeCcccc
Confidence 356666666776665543 33444555554 444444444330 35888999999999987
No 383
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=53.09 E-value=1.5e+02 Score=27.81 Aligned_cols=23 Identities=4% Similarity=0.249 Sum_probs=19.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhh
Q 026925 2 GMIISPTRELSSQIYHVAQPFIS 24 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~ 24 (230)
++|.+|...-++++++.++....
T Consensus 219 IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 219 IVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred EEEECCChhhHHHHHHHHHHHHH
Confidence 57899999999999988888876
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=53.09 E-value=32 Score=28.91 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred CcccEEEEecccccc-ccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc
Q 026925 75 RNLEILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~ 129 (230)
.+.+++++|.+.++- +......+..+.+...+..-++.++|+...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 456899999999886 3456777777777776666678889988776666565543
No 385
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=52.95 E-value=33 Score=27.45 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=24.7
Q ss_pred cEEEEeccccccccc---c-HHHHHHHHHhCCCC-CcEEEEeecCchHHHH
Q 026925 78 EILVLDEADRLLDMG---F-QKQISYIISRLPKL-RRTGLFSATQTEAVEE 123 (230)
Q Consensus 78 ~~lVvDEad~l~~~~---~-~~~~~~i~~~l~~~-~q~i~~SAt~~~~~~~ 123 (230)
..+++||+|.+...+ + .+.+..++..+... ..+++.-|+.+..+..
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~ 157 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDY 157 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHH
Confidence 589999999986422 2 23455555555332 2223333444544433
No 386
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=52.86 E-value=55 Score=25.78 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhh
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
..++..-...|. ..+++++.+.-...++-+.+.+.
T Consensus 168 ~~RITlt~~~i~--~a~~i~~lv~G~~Ka~~~~~~l~ 202 (233)
T TIGR01198 168 HERITLTLPAIN--AARKVFLLIAGEEKRNALAEALA 202 (233)
T ss_pred CCcEEecHHHHh--cCCeEEEEEEChHHHHHHHHHHh
Confidence 457777777774 35678888888888999998886
No 387
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=52.76 E-value=53 Score=20.27 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=37.6
Q ss_pred CceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecc
Q 026925 28 DVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (230)
Q Consensus 28 ~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEa 85 (230)
++++..++|+.+..+....+ .++..+|+|+|- .+. ..+++..++++|+=+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~--~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD-----ILG--EGIDLPDASHVIFYDP 60 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC-----GGT--TSSTSTTESEEEESSS
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec-----ccc--cccccccccccccccc
Confidence 78999999988766555443 346789999995 232 5688888999987555
No 388
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=52.71 E-value=23 Score=32.18 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
...++++|||||-++ + ...+..+++.++...++|++.=.
T Consensus 257 ~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 257 PLPLDVLVVDEASMV-D---LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CCcccEEEEcccccC-C---HHHHHHHHHhcCCCCEEEEECCh
Confidence 345789999999955 3 34566678888888888776543
No 389
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=52.70 E-value=37 Score=23.80 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=29.5
Q ss_pred hCCCCeEEEEcCchhH---------HHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCAC---------VDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~---------~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.....+++|||.+-.. +..+++.|.... ..+.++.++.||+.
T Consensus 72 ~~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~L~GG~~ 122 (132)
T cd01446 72 RGESLAVVVYDESSSDRERLREDSTAESVLGKLLRKL-QEGCSVYLLKGGFE 122 (132)
T ss_pred cCCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhc-CCCceEEEEcchHH
Confidence 3366799999987654 667777776620 12678999999875
No 390
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=52.34 E-value=60 Score=27.96 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=57.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++-.+.=+..|+..+- .+++.++.++||.+.++... .+..++-|++|+|-- .+ +.+++.+++
T Consensus 424 VLIFaEkK~DVD~IhEYLL-----lKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV------AS-KGLDFp~iq 491 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLL-----LKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV------AS-KGLDFPDIQ 491 (610)
T ss_pred eEEEeccccChHHHHHHHH-----HccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc------hh-ccCCCccch
Confidence 5777777777766655443 23889999999988765544 334577899999863 22 678888887
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPK 106 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~ 106 (230)
++| +...-.+++....++.+
T Consensus 492 HVI--------NyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 492 HVI--------NYDMPEEIENYVHRIGR 511 (610)
T ss_pred hhc--------cCCChHHHHHHHHHhcc
Confidence 765 33345566666666643
No 391
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=52.24 E-value=23 Score=27.24 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=29.3
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEEeecCch
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTE 119 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~SAt~~~ 119 (230)
.++++||.+.-+.......+-.++..+.. ..|+++ +|-++
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~Qvii--tTHSp 299 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVII--TTHSP 299 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEE--EES-G
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEE--eCccc
Confidence 78999999988887767766677766655 788877 44444
No 392
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.97 E-value=20 Score=32.31 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||+|.|.... ...+...+...|....+++.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999876543 344455555555666666644
No 393
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=51.89 E-value=18 Score=33.32 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=23.9
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
.+.+.+||||+|+|....+ ..+.+++..-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 5678999999998865443 3333445544555555554
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.20 E-value=24 Score=33.30 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=36.1
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
-++|+|+.|.+-+..-...+++++++.|++...++.|=+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 58999999999888888999999999999998888776644
No 395
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=50.15 E-value=62 Score=29.48 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=41.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP 59 (230)
++|-+.||--|+++..++.+- ++++...++|-+..+.. ..+..+...|+|+|-
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~ 288 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN 288 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 488899999999988888874 68999999987755332 344567889999997
No 396
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=50.05 E-value=31 Score=26.34 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=23.8
Q ss_pred cEEEEecccccc-c----cccHHHHHHHHHhCCCC-CcEEEEeecC
Q 026925 78 EILVLDEADRLL-D----MGFQKQISYIISRLPKL-RRTGLFSATQ 117 (230)
Q Consensus 78 ~~lVvDEad~l~-~----~~~~~~~~~i~~~l~~~-~q~i~~SAt~ 117 (230)
-.+|+||+|.+. . .++...+..++...... ...+.++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 2 24666667777664332 3334445554
No 397
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=49.94 E-value=58 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=28.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV 44 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~ 44 (230)
.+||+++|+.-|..++..+++. ++ ..++|+....+..
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGTLRGAERD 310 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCCCCHHHHh
Confidence 3799999999999999988764 33 6778876655444
No 398
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.89 E-value=21 Score=25.48 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCcccEEEEeccccccccc----------cHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 74 FRNLEILVLDEADRLLDMG----------FQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~----------~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..+.+++|+||++.+.+.. ....+..+.....+....+++....+
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 4567899999999875432 23445555555554444444444444
No 399
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=49.57 E-value=25 Score=29.05 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..-+.+|+||+|.+-.. ....+.+++...+....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 44579999999977432 3455666676666666666643
No 400
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.43 E-value=24 Score=31.92 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=50.7
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
+.+++|+||.+.-++......+..++..+....|+++. |..+.+.. +.+.. +.+...
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~i--TH~~~~~~-----~ad~~-~~l~k~--------------- 518 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCV--THLPQVAA-----HADAH-FKVEKE--------------- 518 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEE--EChHHHHH-----hcCeE-EEEEEc---------------
Confidence 46899999999988887777777777777666665553 33232222 12222 222222
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHh
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIK 184 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 184 (230)
. ......-.+..++..++..-+.+.+..
T Consensus 519 ~-~~~~t~s~i~~L~~~~r~~EiArml~G 546 (563)
T TIGR00634 519 G-LDGRTATRVRPLSGEERVAELARMLAG 546 (563)
T ss_pred c-CCCcEEEEEEECCccHHHHHHHHHhCC
Confidence 0 111122335556777888888887743
No 401
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=49.05 E-value=67 Score=29.42 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+...+.+-+++.+.+.+.|-|.|...|..+...|++.
T Consensus 641 qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~ 678 (747)
T COG3973 641 QRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREK 678 (747)
T ss_pred HhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhc
Confidence 56777888888889999999999999999999999865
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=48.98 E-value=24 Score=33.52 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=33.5
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
=-.+|||++|.+-+......+..+++..|....+++.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 347999999988656667788899999998888888776643
No 403
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.69 E-value=34 Score=30.82 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=53.8
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
..-.+||||+|.=++..-...+-..++.+....|++..| --|.+-......+. +.-.
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VT--HlPQVAa~ad~H~~------V~K~--------------- 509 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVT--HLPQVAAMADTHFL------VEKE--------------- 509 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEe--cHHHHHhhhcceEE------EEEe---------------
Confidence 355899999997666556667777788888999999874 33555555543221 1111
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHh
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIK 184 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 184 (230)
.......-.+..+...+|..-+.+.|..
T Consensus 510 -~~~~~T~s~V~~L~~eeRveEiARMl~G 537 (557)
T COG0497 510 -SEDGRTESRVRPLDKEERVEEIARMLGG 537 (557)
T ss_pred -cCCCceEEeeeeCCHhHHHHHHHHHhcC
Confidence 0111223345666777888888887754
No 404
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=48.34 E-value=74 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=37.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-cCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~~Iiv~TP 59 (230)
+||++.|.+-+..+...+.+. ++.+..++|+....+....... .+..|+|+|-
T Consensus 431 vLIf~~t~~~se~l~~~L~~~-----gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEA-----GIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 799999999998888777764 6788888887554433222222 2458999985
No 405
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.30 E-value=32 Score=31.22 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||+|.|.... ...+..++...|...-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3567899999999775433 334444555555555555543
No 406
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=48.23 E-value=35 Score=31.14 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+.+.+||||+|.|.... ...+...+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999885443 333444455555666666654
No 407
>PRK07413 hypothetical protein; Validated
Probab=48.20 E-value=33 Score=29.36 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=41.1
Q ss_pred CcccEEEEeccccccccccH--HHHHHHHHhCCCCCcEEEEeec-CchHHHHHHHh
Q 026925 75 RNLEILVLDEADRLLDMGFQ--KQISYIISRLPKLRRTGLFSAT-QTEAVEELSKA 127 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~--~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~~~~~ 127 (230)
...+++|+||+-..++.++. +++..+++..|...-+|+..-. .|+.+..++..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 56789999999999888854 4777888888888888887665 67777666653
No 408
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=47.98 E-value=64 Score=26.90 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=35.3
Q ss_pred CcEEEEcCh-------HHHHHHhhC-CcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 52 ANLLIGTPG-------RLYDIMERM-DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 52 ~~Iiv~TP~-------~l~~~l~~~-~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
+|+.+..|+ .+.+++... ..-...+-+.+||||+|.|-... ...+...+..-|....+++.+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEe
Confidence 577777763 333333220 11124567899999999885443 334444555555556566644
No 409
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=47.77 E-value=38 Score=25.39 Aligned_cols=33 Identities=3% Similarity=0.069 Sum_probs=24.3
Q ss_pred CCCeEEEEcCc--hhHHHHHHHHhhhhhccCCceEEecc
Q 026925 186 KSKKIIIYFMT--CACVDYWGVVLPRLAVLKSLSLIPLH 222 (230)
Q Consensus 186 ~~~~~lIF~~t--~~~~~~l~~~L~~~~~~~g~~~~~lh 222 (230)
...|+++|++. .++|..+++.|.+. |.++..+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~----gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQ----GIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHH----T--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHC----CCCEEEEE
Confidence 45799999995 45788999999999 99988887
No 410
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.73 E-value=29 Score=31.79 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.1
Q ss_pred CcccEEEEeccccccc
Q 026925 75 RNLEILVLDEADRLLD 90 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~ 90 (230)
.+.+++||||+|.|-.
T Consensus 118 g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR 133 (624)
T ss_pred CCceEEEEEChHhCCH
Confidence 5568999999998853
No 411
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=47.50 E-value=1e+02 Score=29.28 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCC
Q 026925 41 KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 105 (230)
Q Consensus 41 ~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~ 105 (230)
..+...+..+| +.+.|+--|..-+-. +.+....+..++++-||.+...+-..-+.++.+.-.
T Consensus 91 ~~R~~~Yl~GG--v~fiSsRiLvvDlLt-~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~kn 152 (892)
T KOG0442|consen 91 NKRRSKYLEGG--VFFISSRILVVDLLT-GRIPTEKITGILVLNAHTISETSQEAFILRLYRSKN 152 (892)
T ss_pred hhhHHhhhcCC--eEEeeeceeeeehhc-CccchhHcceEEEechhhhhhcchhHHHHHHHHHhc
Confidence 33444444455 677777555443434 788899999999999999987665555666654443
No 412
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=47.40 E-value=26 Score=28.78 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=18.9
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISR 103 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~ 103 (230)
....+++++|||++|.--+ .+.++++.+.
T Consensus 163 ~~~~~~iivDEA~~L~~~a-le~lr~i~d~ 191 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA-LEELRRIHDK 191 (297)
T ss_pred ccCcceeeeehhhccChHH-HHHHHHHHHh
Confidence 4668899999999985444 2333444433
No 413
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.27 E-value=28 Score=31.03 Aligned_cols=43 Identities=9% Similarity=-0.033 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.=.+|.|+|++-|.+++..-++..-..|+++.++|||.+.-
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~ 337 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKW 337 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHH
Confidence 3345677889999999988776665334588999999998864
No 414
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=47.22 E-value=27 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.0
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.++|+|||..+ -...++.|+.+..+...++++.
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcC
Confidence 68999999987 3567888999998888887754
No 415
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=47.07 E-value=27 Score=30.69 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCcccE-EEEecccccccc---ccHHHHHHHHHhCCCC-CcEEEEeec
Q 026925 74 FRNLEI-LVLDEADRLLDM---GFQKQISYIISRLPKL-RRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~-lVvDEad~l~~~---~~~~~~~~i~~~l~~~-~q~i~~SAt 116 (230)
+.+-++ +.+||||.+++. .+.+.++.+.+.++.+ .-+.++|.+
T Consensus 252 ~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~ 299 (502)
T PF05872_consen 252 LDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN 299 (502)
T ss_pred CCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 455566 569999988864 3778888888887643 444555544
No 416
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=46.57 E-value=21 Score=32.56 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCcEEEEcChHHHHHHhh---CCc---c--cCCcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCchH
Q 026925 51 GANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEA 120 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~---~~~---~--~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~~ 120 (230)
+..+++.|.+.+...+.. .+. + .+.++++|+|||+|.+.... ....+.++++.+.. ..++++.|-..+..
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 577888888776533211 011 1 14678999999999886543 34556667766654 45666644443333
No 417
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=46.52 E-value=84 Score=29.64 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=37.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-cCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~~Iiv~TP 59 (230)
+||.+.|++.+..+...+.+. ++....++|+....+....... ....|+|+|-
T Consensus 427 vLIft~s~~~se~ls~~L~~~-----gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATd 480 (762)
T TIGR03714 427 VLLITGSVEMSEIYSELLLRE-----GIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480 (762)
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCCChHHHHHHHHHcCCCCeEEEEcc
Confidence 799999999998877777764 6777888887664433222222 2347999986
No 418
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=46.02 E-value=33 Score=28.03 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred CcEEEEcChHHHH----------HHhhCCccc--CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 52 ANLLIGTPGRLYD----------IMERMDVLD--FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 52 ~~Iiv~TP~~l~~----------~l~~~~~~~--~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
++++.-+|..-.. +.+. .... ....+.+|+||||.|-.. ....+...+..-+.+..+++.+
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~-~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEF-LSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHH-hccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 5788777765322 2221 1122 367899999999988553 2444444454445555555544
No 419
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=45.66 E-value=74 Score=29.91 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=52.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|-+||.+-++.++.-+.+-.... |.+-....... .++.........|=+-+|.... ..-+.+|
T Consensus 264 iiVTAP~~~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~---g~~~~~~~~~~~i~y~~P~~a~-----------~~~Dllv 328 (758)
T COG1444 264 IIVTAPTPANVQTLFEFAGKGLEFL-GYKRKVAPDAL---GEIREVSGDGFRIEYVPPDDAQ-----------EEADLLV 328 (758)
T ss_pred EEEeCCCHHHHHHHHHHHHHhHHHh-CCccccccccc---cceeeecCCceeEEeeCcchhc-----------ccCCEEE
Confidence 5788999998888777777665554 33211111100 0000000122334455665422 1156999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
||||-.+ -.+.+..+++. .+.++||.|+..
T Consensus 329 VDEAAaI----plplL~~l~~~----~~rv~~sTTIhG 358 (758)
T COG1444 329 VDEAAAI----PLPLLHKLLRR----FPRVLFSTTIHG 358 (758)
T ss_pred EehhhcC----ChHHHHHHHhh----cCceEEEeeecc
Confidence 9999976 35555555544 356888999853
No 420
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=45.66 E-value=50 Score=27.46 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=35.0
Q ss_pred HHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+..++.+. +.+++++||++=..+-..+-.|... |++ +..+.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~----G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRL----GKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc----CCCCeeEeCCCHH
Confidence 4455556532 5679999999988888888888776 885 778888764
No 421
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=45.45 E-value=25 Score=33.10 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=62.7
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEE----cCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCccc--C-
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLV----GGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLD--F- 74 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~--~- 74 (230)
|-+.=+.+|--...+.++..+.. ++.|..+. +.++.++.. .. +--+|++|.-.|.---.. ++.+. +
T Consensus 322 lW~SVSsDLKfDAERDL~DigA~--~I~V~alnK~KYakIss~en~-n~---krGViFaTYtaLIGEs~~~~~kyrtR~r 395 (1300)
T KOG1513|consen 322 LWFSVSSDLKFDAERDLRDIGAT--GIAVHALNKFKYAKISSKENT-NT---KRGVIFATYTALIGESQGKGGKYRTRFR 395 (1300)
T ss_pred EEEEeccccccchhhchhhcCCC--CccceehhhcccccccccccC-Cc---cceeEEEeeHhhhhhccccCchHHHHHH
Confidence 44444555555555566666543 56665542 222222211 11 224999998654221110 01111 1
Q ss_pred --------CcccEEEEecccccccc---------ccHHHHHHHHHhCCCCCcEEEEeecC---chHHHHHHHh
Q 026925 75 --------RNLEILVLDEADRLLDM---------GFQKQISYIISRLPKLRRTGLFSATQ---TEAVEELSKA 127 (230)
Q Consensus 75 --------~~l~~lVvDEad~l~~~---------~~~~~~~~i~~~l~~~~q~i~~SAt~---~~~~~~~~~~ 127 (230)
.-=..||+||||.--+. .-+..+..+.+.+| +.+++..|||= |.++..+.+.
T Consensus 396 QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RL 467 (1300)
T KOG1513|consen 396 QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRL 467 (1300)
T ss_pred HHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhh
Confidence 11257999999987541 14566777778886 66788889983 4444444444
No 422
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=45.37 E-value=33 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=27.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCC-CcEEEE
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLF 113 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~-~q~i~~ 113 (230)
.+-+.+++||.+.-++......+...+..+... .++++.
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIii 154 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456899999999999887777666666655333 455554
No 423
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=45.30 E-value=30 Score=29.43 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..+++++||++-..+...+..|... |+ ++..+.||+.
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~ 93 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLREL----GYTRVASVAGGFS 93 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc----CCCceEeecCcHH
Confidence 5678999999988888899999887 88 5888888874
No 424
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=45.25 E-value=94 Score=25.80 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=25.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
...+.+|||+||.|-..+ ...+..++..-| +..+++.+.
T Consensus 123 ~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 678999999999985443 444445555555 555555543
No 425
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=45.03 E-value=1.5e+02 Score=24.28 Aligned_cols=69 Identities=12% Similarity=0.292 Sum_probs=42.5
Q ss_pred HHHHHHhhhhCCCceEEEEEcCc----chHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecc
Q 026925 16 YHVAQPFISTLPDVKSVLLVGGV----EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (230)
Q Consensus 16 ~~~~~~l~~~~~~~~v~~~~~~~----~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEa 85 (230)
++=+.++...++++.+....... ......+.+.+.++++||++-..+.+.+.. -.-...+..++++|-.
T Consensus 22 ~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~-vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 22 YEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQE-VAKEYPDTKFIIIDGY 94 (306)
T ss_dssp HHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHH-HHTC-TTSEEEEESS-
T ss_pred HHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHH-HHHHCCCCEEEEEecC
Confidence 33444444444467776666544 455566667778999999988777776654 2333467788888754
No 426
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=44.97 E-value=59 Score=25.32 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=27.0
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
..++..-...|.+ .+++++++.-...++-+.+.+..
T Consensus 162 ~~RiTlt~~~i~~--a~~i~ll~~G~~K~~~l~~~l~~ 197 (219)
T cd01400 162 PERITLTLPVLNN--ARRVVFLVTGAEKAEALKRALAG 197 (219)
T ss_pred CccEEecHHHHhc--CCeEEEEEeChhHHHHHHHHHcC
Confidence 4566666677743 56888888888889989888865
No 427
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=44.91 E-value=57 Score=26.87 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCC
Q 026925 175 PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKM 225 (230)
Q Consensus 175 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~ 225 (230)
..++.+.......+|++-||.-=-+||+...++... |++ ++=++||.
T Consensus 160 P~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~~----GF~eVyhL~GGI 207 (308)
T COG1054 160 PAWVEENLDLLKDKKVVMYCTGGIRCEKASAWMKEN----GFKEVYHLEGGI 207 (308)
T ss_pred HHHHHHHHHhccCCcEEEEcCCceeehhhHHHHHHh----cchhhhcccchH
Confidence 366666667778889999999999999999999998 995 88888875
No 428
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=44.78 E-value=30 Score=28.10 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchh-HHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCA-CVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+..++.. ....+++|||++-. .+.+++..|... |++ +..+.||++
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~----G~~~v~~l~GG~~ 124 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTF----GVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHh----cCCcEEEcCCCHH
Confidence 445555554 35679999998754 466677777776 876 777887763
No 429
>PRK09087 hypothetical protein; Validated
Probab=44.76 E-value=36 Score=26.69 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=24.8
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+.+++|++|.+. . -...+-++++.+......++++++.+
T Consensus 89 ~~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~~ilits~~~ 127 (226)
T PRK09087 89 GPVLIEDIDAGG-F-DETGLFHLINSVRQAGTSLLMTSRLW 127 (226)
T ss_pred CeEEEECCCCCC-C-CHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 589999999763 2 24556777776665444455555543
No 430
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.66 E-value=49 Score=29.55 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=35.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...++||.|+|++-|-+++.-.++..+...+.++..-|||+-
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~l 292 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDL 292 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccH
Confidence 446999999999999999888887776778899999999863
No 431
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=44.58 E-value=40 Score=31.11 Aligned_cols=54 Identities=4% Similarity=-0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 175 PSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 175 ~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
....+.++. ...+..++|.++|+.-|.+.+..+...+..-|+++.++.|+++++
T Consensus 131 la~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~ 185 (656)
T PRK12898 131 LTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD 185 (656)
T ss_pred HHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH
Confidence 344444443 445689999999999999888888877555699999999998753
No 432
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=44.56 E-value=29 Score=26.61 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=36.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
..+-+++++||.-.-+|......+..++..+.....+++++..-.+.+..+.
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 204 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVA 204 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 4567899999999989888888888877776444456666665444444433
No 433
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=44.54 E-value=17 Score=33.39 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+++++--.+.|+.--.+ .-.+.++ =..+||||||.+++
T Consensus 323 ~aqlV~LPYQ~LL~~stR~slgI~Lk-dsIvIiDEAHNlid 362 (821)
T KOG1133|consen 323 QAQLVTLPYQLLLHESTRKSLGISLK-DSIVIIDEAHNLID 362 (821)
T ss_pred cccEEeccHHHHHhHHHHHhcCcccc-ccEEEEechhHHHH
Confidence 367666655544433222 1223333 36899999999987
No 434
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=44.35 E-value=69 Score=26.79 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=23.8
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
....+.+||||||.|-... ...+...+..-|.+.-+++.|
T Consensus 104 ~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred cCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3567899999999986544 333333444444444444443
No 435
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=44.22 E-value=30 Score=29.38 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
....+.+||||+|.|-... ...+.+.+..-+....++++|..
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 3567899999999885432 34444555555555555554443
No 436
>COG1485 Predicted ATPase [General function prediction only]
Probab=44.09 E-value=29 Score=29.34 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAV 121 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~ 121 (230)
..+.+.+.+||.+ +.|-+-.-.+.++++.+ .+.+.+++.|.|.|+++
T Consensus 128 ~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 128 AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 5778999999999 66666666667777665 45788888888887653
No 437
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=44.04 E-value=63 Score=30.64 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEec
Q 026925 170 EPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPL 221 (230)
Q Consensus 170 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~l 221 (230)
...+|+..+.+-+.. ..++|+||-..+.+..+.+.+.|.+. |++-.++
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~----~i~h~VL 459 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA----GIPHNVL 459 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc----CCCceee
Confidence 455677777776653 37789999999999999999999987 7765443
No 438
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=44.02 E-value=43 Score=29.26 Aligned_cols=76 Identities=12% Similarity=0.253 Sum_probs=41.7
Q ss_pred CCcEEEEcChHHHHHHhh---CCcc---c--C-CcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCch
Q 026925 51 GANLLIGTPGRLYDIMER---MDVL---D--F-RNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTE 119 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~---~~~~---~--~-~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~ 119 (230)
+..+++.|.+.+..-+.. .+.. . . .+.+.+++||+|.+.+.. ....+.+++..+.. ..++++.|..-|.
T Consensus 160 ~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~ 239 (440)
T PRK14088 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_pred CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH
Confidence 457888888775543321 0111 0 1 257899999999886543 23445555555433 3455554444444
Q ss_pred HHHHHHH
Q 026925 120 AVEELSK 126 (230)
Q Consensus 120 ~~~~~~~ 126 (230)
.+..+..
T Consensus 240 ~l~~l~~ 246 (440)
T PRK14088 240 KLSEFQD 246 (440)
T ss_pred HHHHHHH
Confidence 4444433
No 439
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=43.37 E-value=54 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=28.7
Q ss_pred CeEEEEcC-chhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 188 KKIIIYFM-TCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 188 ~~~lIF~~-t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
++++|||. +-..+...+..|... |+++..+.||+
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~----G~~v~~L~GG~ 109 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQI----GFRVPRLEGGY 109 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHc----CCCEEEecChH
Confidence 35999995 567788899999888 99999999886
No 440
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=43.00 E-value=1.4e+02 Score=23.84 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHhhhhCCCceEEEEEcC---cchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEec
Q 026925 18 VAQPFISTLPDVKSVLLVGG---VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (230)
Q Consensus 18 ~~~~l~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDE 84 (230)
=++++.... ++++...... .......+.+...++++||++...+...+.. -.-...+..++++|-
T Consensus 22 G~~~~~~~~-gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~-vA~~~p~~~F~~~d~ 89 (258)
T cd06353 22 GRKAAEKAL-GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALK-VAKEYPDVKFEHCSG 89 (258)
T ss_pred HHHHHHHhc-CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHH-HHHHCCCCEEEECCC
Confidence 333443333 6666655444 2234555566678999999999888777654 222234677787764
No 441
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=42.88 E-value=1.4e+02 Score=26.74 Aligned_cols=74 Identities=16% Similarity=0.341 Sum_probs=51.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~--------~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
++|++.-|+-|..+.+.+.+.+.. .+ ..+.| |-+..+|.+ .+.++.++++|+|. +.. .
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~~~---~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgE-E 437 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIGIK---AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGE-E 437 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcCCc---ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------ccc-c
Confidence 688999999999999988887543 33 22332 223334444 33456799999996 334 6
Q ss_pred cccCCcccEEEEeccc
Q 026925 71 VLDFRNLEILVLDEAD 86 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad 86 (230)
.++...++++|+=|+=
T Consensus 438 GLDIp~vDlVifYEpv 453 (542)
T COG1111 438 GLDIPEVDLVIFYEPV 453 (542)
T ss_pred cCCCCcccEEEEecCC
Confidence 7899999999977664
No 442
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=42.70 E-value=34 Score=28.86 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.5
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++|||. +-..+..++..|... |+++..+.||+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~----G~~v~~L~GG~~ 124 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEA----GIDVPRLEGGYK 124 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHc----CCCcEEEcCCHH
Confidence 5679999995 557788889999887 999899999864
No 443
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.64 E-value=28 Score=29.45 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=41.1
Q ss_pred HHHHHHHHHhC----CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 175 PSQLVDLLIKN----KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 175 ~~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...-+++|.+. .+.=.+||.+|++-|-+++..|.......+.++.++.||++.
T Consensus 59 ~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~ 115 (442)
T KOG0340|consen 59 AAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDM 115 (442)
T ss_pred hhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHH
Confidence 35555666544 333579999999999999999998866668899999999863
No 444
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=42.17 E-value=46 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.2
Q ss_pred ccEEEEeccccccccccHH
Q 026925 77 LEILVLDEADRLLDMGFQK 95 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~ 95 (230)
...+++||++.+.......
T Consensus 79 ~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 79 PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred CCEEEEECCcccCCHHHHH
Confidence 5899999999998765443
No 445
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.87 E-value=34 Score=33.02 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=24.7
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
++|+||+|.-+|......+-..++ ..+.|+|..|=
T Consensus 1076 FfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1076 FFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred ceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 899999999998764443333333 45689998763
No 446
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.00 E-value=93 Score=19.71 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=29.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGAN 53 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 53 (230)
++|+..+.++..+.......|... ++++..-..+.+...+.......++.
T Consensus 4 v~ii~~~~~~~~~a~~~~~~Lr~~--g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 4 VVVIPVTDEHLDYAKEVAKKLSDA--GIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEEEeeCchHHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 355555555544545555555433 77887766666666666665555644
No 447
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.00 E-value=48 Score=31.05 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.4
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
+-..+++||+|.+.... ... ++..+ ...++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Qda---LL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QDA---LLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-HHH---HHHHh-cCceEEEEEecCCCh
Confidence 45689999999875432 222 23333 345677778875543
No 448
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=40.83 E-value=95 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=22.9
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
-...+.+|||+||.|-...... +...+.--|+..-+++.|
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNa-LLKtLEEPp~~t~fiL~t 169 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANA-LLKTLEEPPPGTVFLLVS 169 (342)
T ss_pred cCCceEEEEechhhcCHHHHHH-HHHHhcCCCcCcEEEEEE
Confidence 3567899999999996544222 222333334444444443
No 449
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=40.79 E-value=1.8e+02 Score=22.80 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh--CCcccCCcccEEEEeccccccccccHH
Q 026925 18 VAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLEILVLDEADRLLDMGFQK 95 (230)
Q Consensus 18 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~--~~~~~~~~l~~lVvDEad~l~~~~~~~ 95 (230)
....+.... +.+|-.-.|-.....+ . .++.+|||+|+.+.-...+-. ...|..++++-+-+-|+=.+...|.-.
T Consensus 38 vA~~~~ekt-g~kVnvt~GPq~tW~~--k-AkknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkgNPk 113 (252)
T COG4588 38 VAKKYEEKT-GIKVNVTAGPQATWNE--K-AKKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKGNPK 113 (252)
T ss_pred HHHHHHHHh-CeEEEEecCCcchhhh--h-hhccCceeecccHHHHHHHHHhccccccccccceeeeeceEEEecCCCcc
Confidence 333444444 5665544443332221 1 257899999999875544432 234778888888888888887777666
Q ss_pred HHHHHHHhCCCCCcEE
Q 026925 96 QISYIISRLPKLRRTG 111 (230)
Q Consensus 96 ~~~~i~~~l~~~~q~i 111 (230)
.++.+-+.+.+...++
T Consensus 114 nIk~~eDll~~gi~iv 129 (252)
T COG4588 114 NIKGFEDLLKPGIGIV 129 (252)
T ss_pred ccccHHHHhcCCceEE
Confidence 6666666665554443
No 450
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=40.78 E-value=54 Score=25.02 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=28.7
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEE
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~ 112 (230)
..-+++++||...-++......+..++..+....++++
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIi 171 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIV 171 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEE
Confidence 34579999999998888778888888877755544444
No 451
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=40.68 E-value=1e+02 Score=26.39 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=48.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++++++.|++-+.++...+... +..+...+++....+. ...+..+...++|+|- ++. ..+++.++
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~-----~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd-----l~a--rgidv~~~ 332 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH-----GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD-----LLA--RGIDVQQV 332 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC-----CceEEEeecccchhhhhHHHHHhhcCCceEEeecc-----ccc--cccchhhc
Confidence 5799999999999888888543 6777888877654433 2334456788999875 222 45677777
Q ss_pred cEEE
Q 026925 78 EILV 81 (230)
Q Consensus 78 ~~lV 81 (230)
..+|
T Consensus 333 slvi 336 (397)
T KOG0327|consen 333 SLVV 336 (397)
T ss_pred ceee
Confidence 7776
No 452
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=40.42 E-value=72 Score=21.94 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=27.0
Q ss_pred ccceEEEEEcCCCC----cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 026925 160 LGLHLEYLECEPDE----KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVV 206 (230)
Q Consensus 160 ~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~ 206 (230)
-.+....+.+.... .+..+.+++...+ +|+++||.|-.++-.++..
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~-~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALESLP-KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHTTT-TSEEEE-SCSHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHhCC-CCEEEECCCChhHHHHHHH
Confidence 34565666665433 3455666666654 6999999999888777654
No 453
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=40.24 E-value=41 Score=31.70 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=24.7
Q ss_pred cEEEEecccccccccc----HHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 78 EILVLDEADRLLDMGF----QKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~----~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
.+++|||+|.+...+. ..++..+++.+-...++.+..||-.++
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 5999999999975432 234444444332344455555664443
No 454
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=40.18 E-value=41 Score=28.95 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcEEEEcChH-------HHHHHhhC-CcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 52 ANLLIGTPGR-------LYDIMERM-DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 52 ~~Iiv~TP~~-------l~~~l~~~-~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
+|+.+-+|+. +..+++.. ..-...+.+.+||||+|.|.... ...+...+..-+....+++.+.
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEEC
Confidence 5777777752 23333320 11123567899999999985443 2334444444444444444433
No 455
>PHA00350 putative assembly protein
Probab=40.09 E-value=44 Score=28.84 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.4
Q ss_pred ccEEEEecccccccc
Q 026925 77 LEILVLDEADRLLDM 91 (230)
Q Consensus 77 l~~lVvDEad~l~~~ 91 (230)
=.++|||||+.++..
T Consensus 82 gaLIViDEaq~~~p~ 96 (399)
T PHA00350 82 GALYVIDEAQMIFPK 96 (399)
T ss_pred CCEEEEECchhhcCC
Confidence 368999999999753
No 456
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=39.71 E-value=40 Score=28.02 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=32.7
Q ss_pred HHHHHHHHhC---CCCeEEEEcCch-hHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIKN---KSKKIIIYFMTC-ACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~~---~~~~~lIF~~t~-~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+.+++... +..+++|||.+- ..+-+++-.|... |+ ++..+.||+.
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~----G~~~V~~LdGG~~ 140 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVF----GHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHc----CCCceEEcCCCHH
Confidence 3444455543 566999999764 3566777778877 88 4889999874
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.30 E-value=41 Score=24.64 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
..+-+++++||.-.=+|......+..++..+.....+++++..-.+.+..+.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 149 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIA 149 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 4566899999999888888888888888776544456666555433344433
No 458
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.18 E-value=36 Score=33.25 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=55.0
Q ss_pred hcCCcEEEEcChHHHHHHhh-CCcc----------c---CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 49 EEGANLLIGTPGRLYDIMER-MDVL----------D---FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~-~~~~----------~---~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
++|.-.-|.-|.+=+..+.+ +|+- - .+.--+.|+||+|.-+|......+-..++...++.|+|..|
T Consensus 1176 seGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIIS 1255 (1293)
T KOG0996|consen 1176 SEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIIS 1255 (1293)
T ss_pred ccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEE
Confidence 34555666667666665543 1110 0 12234789999999999887777777777778899999987
Q ss_pred ecCchHHHHHHHhccC
Q 026925 115 ATQTEAVEELSKAGLR 130 (230)
Q Consensus 115 At~~~~~~~~~~~~~~ 130 (230)
=- .+|-++++..++
T Consensus 1256 LR--nnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1256 LR--NNMFELANRLVG 1269 (1293)
T ss_pred eh--hhHHHHHhhhee
Confidence 54 778888887654
No 459
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.05 E-value=38 Score=24.50 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=33.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~ 122 (230)
..+-+++++||...=+|......+.+++..+....+.++++..-.+.+.
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3456899999999888877777777777766444455666555444333
No 460
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.98 E-value=57 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=21.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEE
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~ 112 (230)
..+-+.+||||+|.|....+ ..+...+...|...-+++
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 35678999999997754433 333333443333433333
No 461
>PRK13770 histidinol dehydrogenase; Provisional
Probab=38.92 E-value=74 Score=27.57 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=23.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP 27 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~ 27 (230)
++++++++++|+.++...+.+.+...|
T Consensus 254 ~~iLvT~s~~la~~V~~ev~~ql~~lp 280 (416)
T PRK13770 254 RTYVISEDAQVLKDLESRIAKALPNVD 280 (416)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999998877664
No 462
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=38.90 E-value=91 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=24.3
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
-...+.+|||+||.|-... ...+..++.--|.+..+++.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 3567899999999986543 333333444444455555544
No 463
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.89 E-value=43 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.++++++|.+-..+...+..|.+. |++ +..+.||+.
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~----G~~~V~~L~GG~~ 379 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKA----GFSDAVHLQGGVV 379 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHc----CCCcEEEecCcHH
Confidence 5578999999988999999999988 885 788888864
No 464
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=38.84 E-value=89 Score=25.68 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=34.1
Q ss_pred CCcEEEEcChH-------HHHHHhh-CCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 51 GANLLIGTPGR-------LYDIMER-MDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 51 ~~~Iiv~TP~~-------l~~~l~~-~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.||+.+-.|+. +.++.+. +..-.....+.+|||+||.|-... ...+...+.--|.+.-+++.|..
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A-aNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA-ANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 37888888752 3333332 011123566899999999985443 22223333333334445554433
No 465
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.65 E-value=54 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
..+-+.+||||+|.|..... ..+...+...+....+++.
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 46678999999998864332 2233333433344444443
No 466
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=38.62 E-value=38 Score=28.74 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=15.7
Q ss_pred ccEEEEeccccccccccHHHHHHHHH
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIIS 102 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~ 102 (230)
.-.+|+||+|.+......+.+..+++
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~ 164 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLR 164 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHH
Confidence 35799999999872222334444443
No 467
>PRK07411 hypothetical protein; Validated
Probab=38.49 E-value=43 Score=28.77 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|++. |++...+.||+.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~----G~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEA----GIEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc----CCCeEEecchHH
Confidence 4679999999999999999999988 998777888764
No 468
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=38.18 E-value=41 Score=25.14 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
..+-+.+++||.-.-+|......+..++..+.....++++++.-.+.+..+.
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 171 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC 171 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 4667899999999989888788888877776444456666655444444443
No 469
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.12 E-value=36 Score=25.29 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=36.0
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCC-CcEEEEeecCchHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVE 122 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~-~q~i~~SAt~~~~~~ 122 (230)
..+-+.+++||--.=+|......+..++..+... ...++++..-.+.+.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4667899999999988888888888887777554 456776666544433
No 470
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=37.90 E-value=43 Score=20.86 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=21.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
+...++|.|.+.+.|+++.+.|++
T Consensus 46 gdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 46 GDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp ESSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh
Confidence 567899999999999999999875
No 471
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=37.79 E-value=34 Score=28.00 Aligned_cols=54 Identities=31% Similarity=0.349 Sum_probs=44.0
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCC-cEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLR-RTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~-q~i~~SAt~~~~~~~~~~~ 127 (230)
+.+-+++|+||-=.=+|......+..+++.+.... .++++|....++++.+...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 45568999999988788878888888888887766 6899999988888777653
No 472
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=37.76 E-value=63 Score=27.56 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce--EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS--LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~--~~~lh~~~~ 226 (230)
+..+++++|.+=.+....+..|++. |++ +..+.||+.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~----G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHL----GHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHc----CCCCceEEeccccC
Confidence 4448999999998999999999988 886 588889875
No 473
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=37.72 E-value=46 Score=25.57 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
..+-+++++||.-.-+|......+..++..+... .+++++..-.+.+..+.
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~ 199 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEALC 199 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhc
Confidence 4567899999999999988888888888777554 56666655444444443
No 474
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.56 E-value=48 Score=25.28 Aligned_cols=53 Identities=32% Similarity=0.364 Sum_probs=36.2
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
..+-+++++||.-.-+|......+..++..+.....+++++..-.+.+..+..
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 35568999999999888887788877777765444566665554444444443
No 475
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=37.49 E-value=68 Score=19.42 Aligned_cols=32 Identities=6% Similarity=-0.118 Sum_probs=20.7
Q ss_pred eEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 189 KIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 189 ~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
+.++.+++.-+|+.+...|.+. |+++......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~----gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEEN----GIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHT----T--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhC----CCcEEEECCc
Confidence 3578889999999999999998 9988765433
No 476
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=37.36 E-value=46 Score=22.55 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhhhhc-----cCCceEEeccCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPRLAV-----LKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~~~~-----~~g~~~~~lh~~~~ 226 (230)
+..+++++|+ +...+...+..|.+.+. ..+.++..+.||+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 4568999997 44445555554432100 02447888998864
No 477
>PRK00254 ski2-like helicase; Provisional
Probab=37.33 E-value=1.2e+02 Score=28.31 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=43.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhh----------------h-------------CCCceEEEEEcCcchHHHHH---HHH
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIS----------------T-------------LPDVKSVLLVGGVEVKADVK---KIE 48 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~----------------~-------------~~~~~v~~~~~~~~~~~~~~---~l~ 48 (230)
.+||++|||.-|......+..... . . ...+...++|.+..+... .+.
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l-~~gv~~hHagl~~~eR~~ve~~F~ 318 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL-RGGVAFHHAGLGRTERVLIEDAFR 318 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH-hhCEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999877665544432211 0 0 123677788877654433 344
Q ss_pred hcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
++..+|+|+|+.- . ..+++.....+|.
T Consensus 319 ~G~i~VLvaT~tL-a------~Gvnipa~~vVI~ 345 (720)
T PRK00254 319 EGLIKVITATPTL-S------AGINLPAFRVIIR 345 (720)
T ss_pred CCCCeEEEeCcHH-h------hhcCCCceEEEEC
Confidence 5778999999942 2 2345555555553
No 478
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=37.25 E-value=49 Score=30.23 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=29.5
Q ss_pred CcccCCcccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeec
Q 026925 70 DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSAT 116 (230)
Q Consensus 70 ~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt 116 (230)
+..+=++.++++||||+-+ . .+.+..|+..+. .++.+|..|.|
T Consensus 293 NsiRGQ~fnll~VDEA~FI-~---~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 293 NSIRGQNFHLLLVDEAHFI-K---KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ccccCCCCCEEEEehhhcc-C---HHHHHHhhhhhcccCceEEEEeCC
Confidence 3444577889999999954 3 334556776665 46777777777
No 479
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=37.12 E-value=39 Score=25.73 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~ 124 (230)
..+-+++++||.-.=+|......+..++..+......++++..-.+.+..+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 345689999999988888878888888877644445666666544444333
No 480
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=37.03 E-value=68 Score=30.12 Aligned_cols=53 Identities=9% Similarity=-0.057 Sum_probs=41.6
Q ss_pred HHHHHH-HHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 176 SQLVDL-LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 176 ~~l~~l-l~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+.. +....+.++.|.++|..-|.+-+..+...+..-|+++.++.|+++.+
T Consensus 85 va~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~ 138 (745)
T TIGR00963 85 TATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPE 138 (745)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHH
Confidence 444444 45556678999999999999988888877666699999999998764
No 481
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.95 E-value=68 Score=28.69 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=13.9
Q ss_pred CCcccEEEEecccccccc
Q 026925 74 FRNLEILVLDEADRLLDM 91 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~ 91 (230)
..+-+.+||||+|.+...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~ 143 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKG 143 (507)
T ss_pred cCCcEEEEEEChhhcCHH
Confidence 356789999999977543
No 482
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=36.90 E-value=44 Score=30.26 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=21.8
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEE
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~ 112 (230)
..+.+.+||||+|.|....+. .+...+...|....+|+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIl 154 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFIL 154 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEE
Confidence 456789999999987544333 33333444344444444
No 483
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.62 E-value=2.9e+02 Score=24.07 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=74.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-HHHHhcCCcEEEEcChHHHHHHhhCCccc--CCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-KKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~~ 79 (230)
+.|+=|-.-|.|++..+++-+ .-+++.....+...+.. ..+.+.+.-+-+++-......+.+.-.++ .++++
T Consensus 4 VLI~GtGPvAiQLAv~lk~~~----~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~- 78 (429)
T PF10100_consen 4 VLIVGTGPVAIQLAVILKKHG----NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYE- 78 (429)
T ss_pred eEEEcCCHHHHHHHHHHHhcc----CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHH-
Confidence 456677778999888888765 33666665544443333 34433345555554444344444311111 12222
Q ss_pred EEEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCchH--HHHHHHhccCCCeEEEEec
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~ 139 (230)
=|.+|.|.++-..-.+.+..+++.++ +-.+++++|.|+..+ ++.++...-.++..|.+..
T Consensus 79 ~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFSt 145 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFST 145 (429)
T ss_pred HhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeec
Confidence 24566666653333555566666665 456899999999875 3445555445666666543
No 484
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=36.49 E-value=41 Score=24.87 Aligned_cols=78 Identities=10% Similarity=0.215 Sum_probs=45.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcCh-HHHHHHhhCCcccC--Cccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG-RLYDIMERMDVLDF--RNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~-~l~~~l~~~~~~~~--~~l~ 78 (230)
+||+.|+.+..+.+.+.+....... ++.+..- ++.+..+..+.+..++.-|++++.+ ++. ..+++ ..++
T Consensus 12 ~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~v~~q-~~~~~~~~l~~~~~~~~~il~~v~~g~~~------EGiD~~~~~~r 83 (167)
T PF13307_consen 12 VLVFFPSYRRLEKVYERLKERLEEK-GIPVFVQ-GSKSRDELLEEFKRGEGAILLAVAGGSFS------EGIDFPGDLLR 83 (167)
T ss_dssp EEEEESSHHHHHHHHTT-TSS-E-E-TSCEEES-TCCHHHHHHHHHCCSSSEEEEEETTSCCG------SSS--ECESEE
T ss_pred EEEEeCCHHHHHHHHHHHHhhcccc-cceeeec-CcchHHHHHHHHHhccCeEEEEEecccEE------EeecCCCchhh
Confidence 6899999999998888777654321 3333322 4555566666776666678888762 222 23343 3477
Q ss_pred EEEEecccc
Q 026925 79 ILVLDEADR 87 (230)
Q Consensus 79 ~lVvDEad~ 87 (230)
.+|++-.--
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 888887663
No 485
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=36.28 E-value=57 Score=25.23 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=32.2
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.-+.+++||...=++......+...+..+.....++++|
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 357999999999898888888888888887677777776
No 486
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=36.21 E-value=44 Score=32.84 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=34.2
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
....++++||.+.-+|......+..++..+....|++++|-.
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 456789999999999988888888888888777888876544
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.09 E-value=64 Score=27.86 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=22.0
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+-.++++||+|++.... ...++..+. ...++++.+|-
T Consensus 92 ~~~vL~IDEi~~l~~~~----q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ----QDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHH----HHHHHHHhh-cCcEEEEEeCC
Confidence 55789999999875332 223344443 34566666654
No 488
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=35.82 E-value=53 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=35.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
.+-+++++||.-.-+|......+..++..+......++++..-.+.+..+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVA 211 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 456899999999989888788887777776544456666655444444443
No 489
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.72 E-value=66 Score=25.45 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=30.8
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.+-+++++||...-++......+..++..+.+..++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999988887777777777776555555655433
No 490
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.67 E-value=42 Score=29.66 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCcccEEEEeccccccc
Q 026925 74 FRNLEILVLDEADRLLD 90 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~ 90 (230)
..+.+.+|+||+|.+..
T Consensus 115 ~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK 131 (472)
T ss_pred cCCeEEEEEEChHHhHH
Confidence 35678999999998854
No 491
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=35.56 E-value=1e+02 Score=26.54 Aligned_cols=67 Identities=19% Similarity=0.350 Sum_probs=40.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++++++++.+|+.++...+.+.....| + .+--.+.+.+.+.=|++.+.+...++. +.+-+.++.+.
T Consensus 233 ~~iLvT~s~~la~~V~~~v~~ql~~l~--r---------~~i~~~al~~~g~ii~v~~l~ea~~~~---N~~APEHLel~ 298 (393)
T TIGR00069 233 QAILVTTSEELAEAVQEEIERQLATLP--R---------REIARKSLEDNGAIILVDDLEEAIEIS---NDYAPEHLELQ 298 (393)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC--h---------HHHHHHHHHhCCEEEEECCHHHHHHHH---HhhChHhheeh
Confidence 478999999999999999999887764 1 011223332234445555555555544 33555555544
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
+
T Consensus 299 ~ 299 (393)
T TIGR00069 299 T 299 (393)
T ss_pred h
Confidence 3
No 492
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=35.40 E-value=97 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=40.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++++++++.+|+.++...+.+.....|.- .--.+.+.+.+.=|++.+.+...++. +.+-+.++.+.
T Consensus 264 ~aiLvT~s~~la~~V~~~v~~ql~~l~r~-----------~ia~~sl~~~g~iivv~~leeai~~~---N~~APEHLel~ 329 (425)
T PRK00877 264 QSILVTTSEELAEAVAAEVERQLATLPRA-----------EIARASLEGQGAIILVDDLEEAIELS---NAYAPEHLEIQ 329 (425)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHhCCEEEEECCHHHHHHHH---HhhChHheeeh
Confidence 47899999999999999999887665421 11223332324445555666555544 33555555544
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
+
T Consensus 330 ~ 330 (425)
T PRK00877 330 T 330 (425)
T ss_pred h
Confidence 3
No 493
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=35.34 E-value=46 Score=25.43 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
..+-+++++||.-.=+|......+..++..+......++++..-.+.+..+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~ 202 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA 202 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 3566899999999888887777777777776543345665555444443333
No 494
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=35.25 E-value=1.2e+02 Score=19.46 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=26.8
Q ss_pred CeEEEeCCh---hhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcC
Q 026925 1 MGMIISPTR---ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEG 51 (230)
Q Consensus 1 ~~lil~Pt~---eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 51 (230)
++.|+.... ++..........|... ++++..-.++.+...+.......+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~--gi~v~~d~~~~~~~k~~~~a~~~g 52 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKA--GIRVELDDSDKSLGKQIKYADKLG 52 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHT--TSEEEEESSSSTHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHC--CCEEEEECCCCchhHHHHHHhhcC
Confidence 345555555 3433333333333322 688877777777777777664443
No 495
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=35.20 E-value=1.6e+02 Score=27.50 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEE--------------------------------------cCcchHHH
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLV--------------------------------------GGVEVKAD 43 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~--------------------------------------~~~~~~~~ 43 (230)
+||.+|+.--+.|+...+.+. +++++-+. |..+..++
T Consensus 457 VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~ 531 (935)
T KOG1802|consen 457 VLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDE 531 (935)
T ss_pred eEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhh
Q ss_pred HHHHHh---------cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecc
Q 026925 44 VKKIEE---------EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (230)
Q Consensus 44 ~~~l~~---------~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEa 85 (230)
.+...- ..+|||.+|--..-+ ..+...+++.+++||+
T Consensus 532 ~k~~~lk~~~e~ell~~AdVIccTcv~Agd-----~rl~~~kfr~VLiDEa 577 (935)
T KOG1802|consen 532 KKYRKLKRAAEKELLNQADVICCTCVGAGD-----RRLSKFKFRTVLIDEA 577 (935)
T ss_pred HHHHHHHHHHHHHHHhhcCEEEEecccccc-----hhhccccccEEEEecc
No 496
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=35.14 E-value=98 Score=25.97 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCcEEEEcChH---------HHHHHhh-CCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 51 GANLLIGTPGR---------LYDIMER-MDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 51 ~~~Iiv~TP~~---------l~~~l~~-~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.||+.+-+|+. +.++.+. ...-.....+.+|||+||.|-... ...+..++.--|...-+++.|
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 37888877762 2222221 011124678999999999996543 223333333333444444444
No 497
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=35.07 E-value=47 Score=26.01 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
..+-+++++||.-.-+|......+..++..+.....+++++..-...+..+..
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 35678999999999898877777777777765444566666665544444443
No 498
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.00 E-value=2.2e+02 Score=22.16 Aligned_cols=34 Identities=9% Similarity=-0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..+.+++... ..+..|||.+...|..+.+.|.+.
T Consensus 167 ~~~~~~l~~~-~~~~ai~~~~d~~a~~~~~~l~~~ 200 (270)
T cd06296 167 RAAAELLALP-ERPTAIFAGNDLMALGVYEAARER 200 (270)
T ss_pred HHHHHHHhCC-CCCcEEEEcCcHHHHHHHHHHHHh
Confidence 4455556543 467899999999999999999987
No 499
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.95 E-value=63 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=21.6
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEE
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~ 112 (230)
..+.+.+||||+|.|.... ...+...+...+....+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 4667899999999875433 2233333444333433444
No 500
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=34.86 E-value=81 Score=27.13 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=23.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP 27 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~ 27 (230)
++++++++.+|+.++...+.+....+|
T Consensus 237 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 263 (390)
T cd06572 237 QAILVTTSEELAEAVEEEVERQLAELP 263 (390)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999998887664
Done!