Query 026925
Match_columns 230
No_of_seqs 107 out of 1135
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3E-34 1E-38 245.3 21.5 206 1-229 131-338 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.4E-31 4.7E-36 227.1 21.6 205 2-228 104-313 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 9.2E-32 3.1E-36 227.9 19.6 206 1-228 107-313 (410)
4 1xti_A Probable ATP-dependent 100.0 1.2E-30 4E-35 219.5 22.0 208 2-228 79-287 (391)
5 3eiq_A Eukaryotic initiation f 100.0 6.9E-31 2.4E-35 222.4 19.0 207 1-228 110-317 (414)
6 1s2m_A Putative ATP-dependent 100.0 1.1E-29 3.7E-34 214.4 20.6 204 2-228 92-295 (400)
7 1fuu_A Yeast initiation factor 100.0 5.2E-30 1.8E-34 215.6 14.8 206 1-229 91-297 (394)
8 3fht_A ATP-dependent RNA helic 100.0 1.4E-29 4.9E-34 214.1 16.6 206 1-229 97-304 (412)
9 3fmp_B ATP-dependent RNA helic 100.0 3.8E-30 1.3E-34 222.4 11.7 206 1-229 164-371 (479)
10 1hv8_A Putative ATP-dependent 100.0 3.7E-28 1.3E-32 202.2 20.5 199 2-228 77-275 (367)
11 3sqw_A ATP-dependent RNA helic 100.0 2.1E-28 7.2E-33 216.1 18.8 216 1-228 97-328 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 5.8E-28 2E-32 212.5 19.8 215 2-228 149-379 (563)
13 3pey_A ATP-dependent RNA helic 100.0 2.3E-28 7.8E-33 205.4 16.4 202 1-228 77-280 (395)
14 2z0m_A 337AA long hypothetical 99.9 2E-26 7E-31 189.7 20.0 196 1-228 58-253 (337)
15 3fho_A ATP-dependent RNA helic 99.9 3.8E-27 1.3E-31 205.0 15.3 203 1-229 191-395 (508)
16 3fe2_A Probable ATP-dependent 99.9 3.8E-26 1.3E-30 180.6 15.3 137 1-140 104-240 (242)
17 3oiy_A Reverse gyrase helicase 99.9 1.4E-26 4.7E-31 196.6 12.9 192 1-224 66-286 (414)
18 1wrb_A DJVLGB; RNA helicase, D 99.9 4.6E-25 1.6E-29 175.4 15.3 137 1-140 102-242 (253)
19 3fmo_B ATP-dependent RNA helic 99.9 1.5E-25 5E-30 182.7 11.6 135 1-139 164-299 (300)
20 2v1x_A ATP-dependent DNA helic 99.9 5.7E-25 2E-29 193.9 16.3 203 2-229 87-305 (591)
21 3iuy_A Probable ATP-dependent 99.9 5.8E-25 2E-29 172.2 13.8 131 2-136 97-227 (228)
22 3ber_A Probable ATP-dependent 99.9 1.6E-24 5.5E-29 172.0 15.5 135 1-137 113-247 (249)
23 3l9o_A ATP-dependent RNA helic 99.9 8.7E-25 3E-29 204.1 16.2 178 2-210 230-464 (1108)
24 2oxc_A Probable ATP-dependent 99.9 1.3E-24 4.3E-29 170.6 14.3 134 1-137 94-228 (230)
25 3bor_A Human initiation factor 99.9 9.3E-25 3.2E-29 172.1 13.4 136 1-138 100-235 (237)
26 1vec_A ATP-dependent RNA helic 99.9 3.4E-24 1.1E-28 165.1 15.9 132 2-135 74-205 (206)
27 4ddu_A Reverse gyrase; topoiso 99.9 8.5E-25 2.9E-29 204.0 14.3 192 1-224 123-343 (1104)
28 3ly5_A ATP-dependent RNA helic 99.9 3.3E-24 1.1E-28 171.5 15.0 131 1-133 128-258 (262)
29 1t6n_A Probable ATP-dependent 99.9 3.6E-24 1.2E-28 166.7 14.8 135 1-136 84-219 (220)
30 2pl3_A Probable ATP-dependent 99.9 4.7E-24 1.6E-28 167.9 14.8 136 1-139 99-234 (236)
31 1oyw_A RECQ helicase, ATP-depe 99.9 6.2E-24 2.1E-28 185.2 16.7 196 2-228 68-273 (523)
32 1q0u_A Bstdead; DEAD protein, 99.9 1.7E-24 5.8E-29 168.5 11.8 138 1-140 74-214 (219)
33 2xgj_A ATP-dependent RNA helic 99.9 5.6E-23 1.9E-27 190.4 20.2 178 2-210 132-366 (1010)
34 1qde_A EIF4A, translation init 99.9 1.6E-23 5.4E-28 163.5 13.2 136 1-140 84-219 (224)
35 2gxq_A Heat resistant RNA depe 99.9 3.1E-23 1.1E-27 159.7 14.3 131 2-137 75-205 (207)
36 1tf5_A Preprotein translocase 99.9 1.6E-24 5.3E-29 193.6 7.5 221 1-229 126-470 (844)
37 2fsf_A Preprotein translocase 99.9 4.2E-24 1.4E-28 190.5 9.7 219 1-228 117-478 (853)
38 1gku_B Reverse gyrase, TOP-RG; 99.9 2.1E-24 7.2E-29 201.1 8.0 191 1-226 101-309 (1054)
39 4a4z_A Antiviral helicase SKI2 99.9 6.9E-23 2.4E-27 189.7 16.7 113 2-127 85-197 (997)
40 3dkp_A Probable ATP-dependent 99.9 3.6E-23 1.2E-27 163.6 9.6 139 1-140 100-243 (245)
41 2zj8_A DNA helicase, putative 99.9 2.8E-22 9.5E-27 181.1 15.7 179 2-210 71-260 (720)
42 2ykg_A Probable ATP-dependent 99.9 1.2E-22 4.2E-27 182.6 11.7 114 2-118 64-184 (696)
43 1wp9_A ATP-dependent RNA helic 99.9 2.2E-21 7.4E-26 166.4 18.8 115 2-120 55-169 (494)
44 4a2p_A RIG-I, retinoic acid in 99.9 3.8E-22 1.3E-26 174.7 14.1 114 2-118 58-177 (556)
45 1nkt_A Preprotein translocase 99.9 2.6E-22 8.8E-27 179.5 12.1 219 1-228 154-497 (922)
46 2va8_A SSO2462, SKI2-type heli 99.9 7.1E-22 2.4E-26 178.3 15.0 190 2-210 78-275 (715)
47 3tbk_A RIG-I helicase domain; 99.9 2.8E-21 9.5E-26 169.0 17.5 116 1-119 54-176 (555)
48 3o8b_A HCV NS3 protease/helica 99.9 2.3E-21 7.7E-26 171.3 15.6 174 1-229 259-434 (666)
49 4f92_B U5 small nuclear ribonu 99.9 9.4E-22 3.2E-26 189.7 13.6 186 2-210 137-340 (1724)
50 2p6r_A Afuhel308 helicase; pro 99.9 5.8E-22 2E-26 178.5 10.6 199 1-229 70-310 (702)
51 4a2q_A RIG-I, retinoic acid in 99.9 3.6E-21 1.2E-25 175.5 15.7 115 1-118 298-418 (797)
52 2eyq_A TRCF, transcription-rep 99.9 5.1E-21 1.8E-25 179.6 15.9 195 1-229 654-852 (1151)
53 4f92_B U5 small nuclear ribonu 99.8 1.7E-20 5.9E-25 181.0 17.0 186 2-210 975-1178(1724)
54 4a2w_A RIG-I, retinoic acid in 99.8 2.9E-20 9.7E-25 171.9 15.2 114 2-118 299-418 (936)
55 1gm5_A RECG; helicase, replica 99.8 2E-19 6.8E-24 162.4 15.5 195 1-229 419-627 (780)
56 4gl2_A Interferon-induced heli 99.8 1.5E-20 5.1E-25 169.2 5.5 115 2-119 59-193 (699)
57 2oca_A DAR protein, ATP-depend 99.8 6.9E-20 2.4E-24 159.3 4.6 200 2-228 160-384 (510)
58 2xau_A PRE-mRNA-splicing facto 99.8 2E-17 6.7E-22 149.9 16.8 196 2-228 143-351 (773)
59 1yks_A Genome polyprotein [con 99.7 1.7E-18 5.9E-23 147.9 5.0 164 1-224 39-210 (440)
60 2whx_A Serine protease/ntpase/ 99.7 8.3E-18 2.8E-22 148.9 9.0 171 1-224 217-388 (618)
61 2jlq_A Serine protease subunit 99.7 2.6E-17 8.8E-22 141.1 11.6 173 1-226 50-223 (451)
62 2fwr_A DNA repair protein RAD2 99.7 4.5E-18 1.5E-22 146.5 6.3 195 1-228 135-381 (472)
63 2v6i_A RNA helicase; membrane, 99.7 2.3E-16 7.7E-21 134.5 14.8 172 1-225 33-205 (431)
64 3h1t_A Type I site-specific re 99.7 7.5E-17 2.6E-21 142.6 9.7 208 2-227 238-483 (590)
65 2wv9_A Flavivirin protease NS2 99.7 1.6E-17 5.6E-22 148.1 4.0 164 1-224 272-443 (673)
66 3rc3_A ATP-dependent RNA helic 99.7 6.4E-16 2.2E-20 137.7 12.6 175 2-228 182-357 (677)
67 2z83_A Helicase/nucleoside tri 99.6 3.5E-16 1.2E-20 134.3 8.7 167 1-224 52-223 (459)
68 3b6e_A Interferon-induced heli 99.6 5.6E-16 1.9E-20 119.5 7.0 112 2-116 85-216 (216)
69 3llm_A ATP-dependent RNA helic 99.6 7.4E-15 2.5E-19 115.2 10.7 119 2-133 112-232 (235)
70 3dmq_A RNA polymerase-associat 99.5 1.7E-14 5.6E-19 133.9 10.7 56 171-229 487-542 (968)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 9.9E-15 3.4E-19 135.2 9.2 107 2-119 333-440 (1038)
72 2ipc_A Preprotein translocase 99.5 2.6E-13 8.8E-18 121.8 17.6 85 1-89 122-215 (997)
73 1rif_A DAR protein, DNA helica 99.5 1.2E-14 4.2E-19 117.0 5.4 106 2-120 160-265 (282)
74 1z63_A Helicase of the SNF2/RA 99.5 3.6E-14 1.2E-18 122.9 8.7 100 2-118 89-188 (500)
75 3jux_A Protein translocase sub 99.4 1.3E-12 4.3E-17 115.4 13.1 98 109-227 411-510 (822)
76 3mwy_W Chromo domain-containin 99.4 2.8E-12 9.4E-17 117.1 13.3 106 2-117 289-405 (800)
77 1z3i_X Similar to RAD54-like; 99.4 1.4E-11 4.8E-16 109.9 15.6 107 2-117 117-230 (644)
78 2fz4_A DNA repair protein RAD2 99.3 2.9E-11 9.9E-16 94.8 9.8 94 2-119 136-230 (237)
79 2d7d_A Uvrabc system protein B 99.0 7E-10 2.4E-14 99.1 8.9 137 57-228 320-482 (661)
80 2p6n_A ATP-dependent RNA helic 99.0 2.8E-10 9.6E-15 86.2 5.3 84 126-229 9-92 (191)
81 1c4o_A DNA nucleotide excision 99.0 1.6E-09 5.4E-14 96.9 8.6 137 57-228 314-476 (664)
82 2hjv_A ATP-dependent RNA helic 99.0 7.1E-10 2.4E-14 81.8 5.3 70 156-229 4-73 (163)
83 1t5i_A C_terminal domain of A 98.9 9.6E-10 3.3E-14 81.9 5.7 68 158-229 2-69 (172)
84 2rb4_A ATP-dependent RNA helic 98.9 1.4E-09 4.8E-14 81.1 5.4 68 157-228 3-71 (175)
85 2jgn_A DBX, DDX3, ATP-dependen 98.8 5.5E-09 1.9E-13 78.6 7.1 70 156-229 14-84 (185)
86 1fuk_A Eukaryotic initiation f 98.8 3.4E-09 1.2E-13 78.2 5.2 65 160-228 2-67 (165)
87 3i32_A Heat resistant RNA depe 98.6 5.4E-08 1.8E-12 78.7 6.5 65 161-229 2-66 (300)
88 3eaq_A Heat resistant RNA depe 98.6 4.8E-08 1.6E-12 75.1 5.5 66 160-229 4-69 (212)
89 2yjt_D ATP-dependent RNA helic 98.0 5.2E-09 1.8E-13 77.6 0.0 66 160-229 2-68 (170)
90 3crv_A XPD/RAD3 related DNA he 98.6 7.8E-08 2.7E-12 84.2 6.9 87 2-90 50-187 (551)
91 2vl7_A XPD; helicase, unknown 98.0 3.8E-06 1.3E-10 73.3 4.9 83 2-90 54-189 (540)
92 1z5z_A Helicase of the SNF2/RA 97.3 0.00014 4.6E-09 57.8 3.0 57 169-228 92-150 (271)
93 1w36_D RECD, exodeoxyribonucle 96.6 0.0027 9.3E-08 56.1 5.9 99 2-116 199-298 (608)
94 2p6n_A ATP-dependent RNA helic 95.0 0.24 8.1E-06 36.7 9.9 69 2-82 57-128 (191)
95 2hjv_A ATP-dependent RNA helic 95.0 0.15 5.2E-06 36.5 8.6 71 2-84 38-111 (163)
96 1fuk_A Eukaryotic initiation f 94.2 0.35 1.2E-05 34.6 8.9 71 2-84 33-106 (165)
97 3eaq_A Heat resistant RNA depe 94.1 0.29 9.8E-06 36.8 8.6 69 2-82 34-105 (212)
98 2jgn_A DBX, DDX3, ATP-dependen 93.5 0.37 1.3E-05 35.4 7.9 69 2-82 49-120 (185)
99 1t5i_A C_terminal domain of A 93.3 0.48 1.7E-05 34.2 8.2 71 2-84 34-107 (172)
100 2rb4_A ATP-dependent RNA helic 92.9 0.37 1.3E-05 34.9 7.1 69 2-82 37-108 (175)
101 2d7d_A Uvrabc system protein B 92.2 3.2 0.00011 36.9 13.5 75 2-88 448-525 (661)
102 3pey_A ATP-dependent RNA helic 92.0 3.8 0.00013 33.1 12.9 74 2-87 246-322 (395)
103 2db3_A ATP-dependent RNA helic 92.0 0.83 2.8E-05 38.3 9.0 69 2-82 303-374 (434)
104 3i5x_A ATP-dependent RNA helic 92.0 0.83 2.9E-05 39.5 9.3 75 2-85 342-419 (563)
105 2i4i_A ATP-dependent RNA helic 91.6 0.91 3.1E-05 37.3 8.9 69 2-82 279-350 (417)
106 3i32_A Heat resistant RNA depe 91.6 0.78 2.7E-05 36.6 8.1 69 2-82 31-102 (300)
107 3sqw_A ATP-dependent RNA helic 91.6 1.1 3.6E-05 39.1 9.6 76 2-86 291-369 (579)
108 3foj_A Uncharacterized protein 90.9 0.22 7.4E-06 32.5 3.5 37 186-226 55-91 (100)
109 1wv9_A Rhodanese homolog TT165 90.9 0.25 8.6E-06 31.8 3.8 36 188-227 54-89 (94)
110 1c4o_A DNA nucleotide excision 90.8 4.3 0.00015 36.1 12.8 75 2-88 442-519 (664)
111 3eme_A Rhodanese-like domain p 90.8 0.21 7.1E-06 32.8 3.3 37 186-226 55-91 (103)
112 3gk5_A Uncharacterized rhodane 90.7 0.2 6.7E-06 33.4 3.2 46 177-226 44-90 (108)
113 1hv8_A Putative ATP-dependent 90.4 1.4 4.7E-05 35.4 8.7 71 2-84 241-314 (367)
114 3fht_A ATP-dependent RNA helic 90.3 1.2 4E-05 36.5 8.3 69 2-82 269-340 (412)
115 2v6i_A RNA helicase; membrane, 90.2 0.58 2E-05 39.3 6.4 66 1-80 173-238 (431)
116 2eyq_A TRCF, transcription-rep 90.0 0.71 2.4E-05 43.9 7.4 77 1-87 814-893 (1151)
117 1oyw_A RECQ helicase, ATP-depe 90.0 1.3 4.5E-05 38.1 8.5 69 2-82 239-310 (523)
118 3iwh_A Rhodanese-like domain p 89.9 0.27 9.4E-06 32.5 3.3 37 186-226 55-91 (103)
119 2j0s_A ATP-dependent RNA helic 89.9 1.4 4.8E-05 36.2 8.4 69 2-82 279-350 (410)
120 1s2m_A Putative ATP-dependent 89.4 1.7 5.8E-05 35.5 8.6 69 2-82 261-332 (400)
121 1xti_A Probable ATP-dependent 89.2 1.5 5.3E-05 35.5 8.1 72 2-85 253-327 (391)
122 1yks_A Genome polyprotein [con 88.9 0.44 1.5E-05 40.2 4.7 67 1-81 179-245 (440)
123 2v1x_A ATP-dependent DNA helic 88.8 1.4 4.9E-05 38.6 8.0 69 2-82 270-341 (591)
124 3hix_A ALR3790 protein; rhodan 87.9 0.46 1.6E-05 31.3 3.4 37 186-226 51-88 (106)
125 3vkw_A Replicase large subunit 87.6 1.6 5.5E-05 36.8 7.2 67 2-96 187-253 (446)
126 3flh_A Uncharacterized protein 87.4 0.38 1.3E-05 32.8 2.8 45 178-226 61-108 (124)
127 2k0z_A Uncharacterized protein 87.2 0.64 2.2E-05 30.8 3.8 38 185-226 54-91 (110)
128 3nhv_A BH2092 protein; alpha-b 86.8 0.54 1.8E-05 33.0 3.4 37 186-226 71-109 (144)
129 1gmx_A GLPE protein; transfera 86.2 0.54 1.8E-05 31.0 3.0 37 186-226 57-94 (108)
130 3g5j_A Putative ATP/GTP bindin 86.1 0.55 1.9E-05 32.1 3.1 35 188-226 90-125 (134)
131 1qxn_A SUD, sulfide dehydrogen 86.0 0.6 2.1E-05 32.4 3.2 37 186-226 81-118 (137)
132 2wv9_A Flavivirin protease NS2 85.2 1.3 4.4E-05 39.5 5.7 67 1-81 412-478 (673)
133 2fsx_A RV0390, COG0607: rhodan 85.0 0.85 2.9E-05 32.0 3.7 37 186-226 79-116 (148)
134 2xau_A PRE-mRNA-splicing facto 85.0 2.1 7.1E-05 38.9 7.0 73 2-81 306-392 (773)
135 2hhg_A Hypothetical protein RP 84.8 0.76 2.6E-05 31.8 3.3 37 186-226 85-122 (139)
136 1tq1_A AT5G66040, senescence-a 84.8 0.63 2.2E-05 31.9 2.8 37 186-226 81-118 (129)
137 1wp9_A ATP-dependent RNA helic 84.4 4 0.00014 33.8 8.2 71 2-84 364-445 (494)
138 3d1p_A Putative thiosulfate su 84.3 0.91 3.1E-05 31.4 3.5 37 186-226 90-127 (139)
139 2jtq_A Phage shock protein E; 84.3 1 3.5E-05 28.1 3.5 38 185-227 39-77 (85)
140 2jlq_A Serine protease subunit 83.8 1.5 5E-05 37.0 5.2 66 2-81 191-256 (451)
141 1vee_A Proline-rich protein fa 83.8 1.2 4.1E-05 30.7 3.9 37 186-226 73-110 (134)
142 3ilm_A ALR3790 protein; rhodan 83.2 1.1 3.8E-05 31.3 3.6 37 186-226 55-92 (141)
143 3rc3_A ATP-dependent RNA helic 83.0 5 0.00017 35.8 8.5 73 3-88 324-401 (677)
144 2oca_A DAR protein, ATP-depend 82.7 15 0.00052 31.0 11.3 73 3-86 351-426 (510)
145 4a15_A XPD helicase, ATP-depen 82.1 0.92 3.2E-05 40.0 3.4 36 2-38 54-89 (620)
146 2whx_A Serine protease/ntpase/ 81.8 2.8 9.5E-05 37.0 6.4 66 2-81 358-423 (618)
147 3eiq_A Eukaryotic initiation f 81.5 2 6.8E-05 35.2 5.1 69 2-82 283-354 (414)
148 2kjq_A DNAA-related protein; s 79.4 1.1 3.9E-05 31.5 2.6 44 74-118 81-125 (149)
149 3hgt_A HDA1 complex subunit 3; 79.2 3.8 0.00013 33.0 5.8 54 170-227 106-161 (328)
150 3oiy_A Reverse gyrase helicase 79.2 3 0.0001 34.3 5.5 68 2-84 255-328 (414)
151 2yjt_D ATP-dependent RNA helic 80.0 0.41 1.4E-05 34.5 0.0 70 2-83 33-105 (170)
152 4f67_A UPF0176 protein LPG2838 78.5 2 6.9E-05 33.5 3.9 45 178-226 172-217 (265)
153 2gno_A DNA polymerase III, gam 77.8 24 0.00082 27.9 10.4 63 51-114 49-119 (305)
154 2z0m_A 337AA long hypothetical 76.1 7.6 0.00026 30.5 6.9 67 2-84 223-292 (337)
155 1qde_A EIF4A, translation init 75.6 3.6 0.00012 30.5 4.6 58 171-228 61-123 (224)
156 2z83_A Helicase/nucleoside tri 74.3 1.7 5.8E-05 36.7 2.6 66 2-81 193-258 (459)
157 3ber_A Probable ATP-dependent 73.9 8.1 0.00028 29.4 6.3 43 185-227 109-151 (249)
158 1sxj_E Activator 1 40 kDa subu 73.9 2.9 0.0001 33.5 3.9 41 75-116 133-173 (354)
159 2o0j_A Terminase, DNA packagin 73.7 36 0.0012 27.9 11.0 75 2-90 211-287 (385)
160 3tbk_A RIG-I helicase domain; 73.3 6.8 0.00023 33.3 6.3 42 187-228 52-93 (555)
161 3tg1_B Dual specificity protei 72.3 2.8 9.4E-05 29.7 3.0 37 186-226 92-137 (158)
162 3o8b_A HCV NS3 protease/helica 71.3 3.8 0.00013 36.5 4.2 63 2-81 399-461 (666)
163 1g5t_A COB(I)alamin adenosyltr 70.7 4.6 0.00016 30.0 3.9 52 75-126 119-172 (196)
164 1uar_A Rhodanese; sulfurtransf 70.4 6 0.0002 30.8 4.9 47 176-226 219-270 (285)
165 1urh_A 3-mercaptopyruvate sulf 70.3 3.9 0.00013 31.8 3.8 47 176-226 216-266 (280)
166 3kta_B Chromosome segregation 69.7 5 0.00017 29.0 4.0 39 76-114 86-124 (173)
167 4a2p_A RIG-I, retinoic acid in 69.6 9.4 0.00032 32.4 6.3 42 187-228 55-96 (556)
168 2oxc_A Probable ATP-dependent 69.1 7 0.00024 29.2 4.9 56 172-227 72-133 (230)
169 3fmp_B ATP-dependent RNA helic 68.9 1 3.4E-05 38.1 0.0 68 2-81 336-406 (479)
170 1e0c_A Rhodanese, sulfurtransf 68.5 6.2 0.00021 30.4 4.6 38 185-226 221-259 (271)
171 2eg4_A Probable thiosulfate su 68.0 4.9 0.00017 30.3 3.8 38 185-226 182-219 (230)
172 2w00_A HSDR, R.ECOR124I; ATP-b 67.7 28 0.00097 32.7 9.4 116 2-130 540-721 (1038)
173 3h1t_A Type I site-specific re 67.4 22 0.00077 30.7 8.3 78 2-86 442-527 (590)
174 4ddu_A Reverse gyrase; topoiso 67.1 8.8 0.0003 36.3 5.9 76 1-87 311-388 (1104)
175 2pl3_A Probable ATP-dependent 67.0 7.7 0.00027 29.0 4.7 42 186-227 96-137 (236)
176 3u61_B DNA polymerase accessor 66.7 4.8 0.00016 31.9 3.7 41 75-115 104-144 (324)
177 1urh_A 3-mercaptopyruvate sulf 66.6 3.4 0.00012 32.2 2.7 47 176-226 72-123 (280)
178 3fe2_A Probable ATP-dependent 65.9 8.2 0.00028 29.1 4.7 42 186-227 101-142 (242)
179 4gl2_A Interferon-induced heli 65.5 2.9 0.0001 37.1 2.3 102 2-115 403-517 (699)
180 2j6p_A SB(V)-AS(V) reductase; 65.3 11 0.00037 26.3 5.0 46 177-226 58-111 (152)
181 3bos_A Putative DNA replicatio 64.3 37 0.0013 24.8 8.2 65 51-116 80-146 (242)
182 2xzl_A ATP-dependent helicase 64.1 49 0.0017 30.1 10.0 25 186-210 674-698 (802)
183 4a15_A XPD helicase, ATP-depen 63.6 20 0.0007 31.5 7.3 22 187-208 448-469 (620)
184 4a2q_A RIG-I, retinoic acid in 63.1 13 0.00045 33.6 6.2 42 187-228 296-337 (797)
185 1e0c_A Rhodanese, sulfurtransf 63.0 6 0.00021 30.5 3.5 38 185-226 79-118 (271)
186 3bor_A Human initiation factor 62.6 9.7 0.00033 28.6 4.5 42 186-227 97-138 (237)
187 3fho_A ATP-dependent RNA helic 62.6 2.8 9.5E-05 35.8 1.6 70 2-83 360-432 (508)
188 3crv_A XPD/RAD3 related DNA he 62.4 29 0.00099 29.9 8.0 21 186-206 392-412 (551)
189 2chg_A Replication factor C sm 62.0 16 0.00056 26.3 5.7 39 75-114 101-139 (226)
190 3dmq_A RNA polymerase-associat 61.8 12 0.00042 34.8 5.8 86 2-102 506-596 (968)
191 2r2a_A Uncharacterized protein 61.7 4.9 0.00017 29.8 2.6 39 77-116 88-132 (199)
192 2orw_A Thymidine kinase; TMTK, 61.7 22 0.00074 25.7 6.2 35 76-114 76-110 (184)
193 2wjy_A Regulator of nonsense t 61.6 38 0.0013 30.8 8.8 97 2-114 403-547 (800)
194 3aay_A Putative thiosulfate su 61.3 7.5 0.00026 30.1 3.8 37 185-225 75-113 (277)
195 3cpe_A Terminase, DNA packagin 61.2 65 0.0022 28.0 10.1 97 2-114 211-311 (592)
196 3syl_A Protein CBBX; photosynt 60.9 9.7 0.00033 29.7 4.4 13 77-89 131-143 (309)
197 2va8_A SSO2462, SKI2-type heli 60.7 26 0.00088 31.1 7.6 74 1-81 254-361 (715)
198 3iuy_A Probable ATP-dependent 60.1 11 0.00038 27.9 4.4 42 186-228 93-134 (228)
199 3lwd_A 6-phosphogluconolactona 60.1 15 0.00052 27.7 5.2 36 172-209 169-204 (226)
200 2fz4_A DNA repair protein RAD2 60.0 39 0.0013 25.3 7.5 52 170-226 117-169 (237)
201 1l8q_A Chromosomal replication 60.0 8.3 0.00028 30.5 3.9 66 51-117 65-140 (324)
202 1iqp_A RFCS; clamp loader, ext 59.9 17 0.0006 28.3 5.8 39 75-114 109-147 (327)
203 3ec2_A DNA replication protein 59.8 6.2 0.00021 28.2 2.8 45 74-118 98-143 (180)
204 2gxq_A Heat resistant RNA depe 59.5 14 0.00048 26.7 4.8 40 186-227 71-110 (207)
205 3i2v_A Adenylyltransferase and 59.2 6.7 0.00023 26.1 2.8 39 188-226 73-114 (127)
206 4ag6_A VIRB4 ATPase, type IV s 59.2 8.7 0.0003 31.4 4.0 32 76-107 262-296 (392)
207 1t6n_A Probable ATP-dependent 58.9 15 0.00051 27.0 5.0 40 187-226 82-122 (220)
208 1wrb_A DJVLGB; RNA helicase, D 58.6 8.8 0.0003 29.0 3.7 41 187-227 100-140 (253)
209 1tf5_A Preprotein translocase 58.2 12 0.0004 34.3 4.8 53 175-227 111-164 (844)
210 3te6_A Regulatory protein SIR3 58.1 20 0.00068 28.7 5.8 41 75-118 131-174 (318)
211 1vec_A ATP-dependent RNA helic 57.0 16 0.00056 26.3 4.9 56 172-227 51-112 (206)
212 3aay_A Putative thiosulfate su 56.9 14 0.00049 28.4 4.7 46 177-226 213-263 (277)
213 1t3k_A Arath CDC25, dual-speci 56.7 9.6 0.00033 26.7 3.3 41 186-226 84-130 (152)
214 2z4s_A Chromosomal replication 56.6 12 0.00043 31.2 4.5 40 76-115 194-235 (440)
215 1fuu_A Yeast initiation factor 56.5 15 0.00051 29.5 4.9 42 186-227 88-129 (394)
216 3hzu_A Thiosulfate sulfurtrans 56.3 9 0.00031 30.5 3.5 46 176-225 97-147 (318)
217 2wlr_A Putative thiosulfate su 56.3 19 0.00065 29.8 5.6 47 176-226 189-239 (423)
218 3lhi_A Putative 6-phosphogluco 56.1 15 0.00051 27.8 4.5 36 172-209 173-208 (232)
219 2zj8_A DNA helicase, putative 56.1 29 0.001 30.9 7.1 77 1-85 239-346 (720)
220 2ouc_A Dual specificity protei 56.0 5.4 0.00018 27.1 1.9 36 187-226 83-127 (142)
221 2eg4_A Probable thiosulfate su 56.0 22 0.00076 26.5 5.5 42 178-224 51-95 (230)
222 1njg_A DNA polymerase III subu 55.9 12 0.00039 27.5 3.9 38 76-114 126-163 (250)
223 3hjh_A Transcription-repair-co 55.5 22 0.00076 30.2 5.9 40 175-219 371-410 (483)
224 1uar_A Rhodanese; sulfurtransf 55.4 6.6 0.00022 30.6 2.5 45 178-226 67-116 (285)
225 3e1s_A Exodeoxyribonuclease V, 55.2 15 0.00052 32.0 4.9 37 75-115 278-314 (574)
226 3sxu_A DNA polymerase III subu 55.1 26 0.00089 24.6 5.3 37 174-210 24-62 (150)
227 1rhs_A Sulfur-substituted rhod 54.6 12 0.00041 29.3 3.9 47 176-226 226-276 (296)
228 3co5_A Putative two-component 54.5 47 0.0016 22.5 7.5 39 77-116 76-115 (143)
229 1yt8_A Thiosulfate sulfurtrans 54.4 12 0.00041 32.2 4.2 37 186-226 321-358 (539)
230 3nwp_A 6-phosphogluconolactona 54.2 17 0.00058 27.6 4.6 144 58-209 48-208 (233)
231 1q0u_A Bstdead; DEAD protein, 54.0 16 0.00054 26.9 4.3 41 186-226 71-115 (219)
232 3ntd_A FAD-dependent pyridine 53.9 9.2 0.00032 32.9 3.4 37 186-226 523-559 (565)
233 2q5c_A NTRC family transcripti 53.4 63 0.0021 23.6 7.6 60 2-68 7-67 (196)
234 2fwr_A DNA repair protein RAD2 53.1 36 0.0012 28.3 6.9 52 171-227 118-170 (472)
235 1sxj_D Activator 1 41 kDa subu 52.3 14 0.00047 29.3 4.0 39 75-114 132-170 (353)
236 3b6e_A Interferon-induced heli 51.9 22 0.00075 25.7 4.8 42 186-228 81-123 (216)
237 2p65_A Hypothetical protein PF 51.9 5.6 0.00019 28.1 1.4 13 77-89 116-128 (187)
238 2b8t_A Thymidine kinase; deoxy 51.5 35 0.0012 25.6 5.9 56 53-114 68-123 (223)
239 1sxj_C Activator 1 40 kDa subu 50.9 25 0.00085 27.9 5.3 39 75-114 109-147 (340)
240 2ykg_A Probable ATP-dependent 49.9 40 0.0014 29.7 6.9 41 188-228 62-102 (696)
241 1a5t_A Delta prime, HOLB; zinc 49.9 13 0.00046 29.6 3.5 39 75-114 107-145 (334)
242 3h4m_A Proteasome-activating n 49.7 15 0.0005 28.3 3.7 12 78-89 112-123 (285)
243 1d2n_A N-ethylmaleimide-sensit 49.6 21 0.00072 27.3 4.6 15 75-89 123-137 (272)
244 1jbk_A CLPB protein; beta barr 49.0 28 0.00094 24.3 4.9 13 77-89 116-128 (195)
245 1rhs_A Sulfur-substituted rhod 48.4 10 0.00036 29.7 2.6 37 186-226 91-131 (296)
246 4a2w_A RIG-I, retinoic acid in 48.4 18 0.00063 33.4 4.6 42 187-228 296-337 (936)
247 1y89_A DEVB protein; structura 48.1 35 0.0012 25.8 5.5 64 3-86 4-71 (238)
248 3ics_A Coenzyme A-disulfide re 48.0 12 0.00041 32.4 3.2 37 186-226 540-576 (588)
249 2fsf_A Preprotein translocase 48.0 30 0.001 31.7 5.7 53 175-227 102-155 (853)
250 3ly5_A ATP-dependent RNA helic 47.3 25 0.00087 26.8 4.7 41 186-226 125-165 (262)
251 1sxj_B Activator 1 37 kDa subu 46.7 12 0.00042 29.1 2.8 38 76-114 107-144 (323)
252 2lnd_A De novo designed protei 46.5 50 0.0017 20.4 5.5 43 177-223 39-85 (112)
253 3jux_A Protein translocase sub 45.1 38 0.0013 30.8 5.8 53 2-59 477-530 (822)
254 2p6r_A Afuhel308 helicase; pro 44.9 29 0.001 30.7 5.3 74 1-81 244-345 (702)
255 3hzu_A Thiosulfate sulfurtrans 44.8 11 0.00039 29.9 2.4 47 176-226 247-296 (318)
256 3fmo_B ATP-dependent RNA helic 44.6 36 0.0012 26.6 5.2 57 171-227 141-203 (300)
257 2i3b_A HCR-ntpase, human cance 44.5 14 0.00047 27.0 2.6 41 74-117 103-145 (189)
258 1okg_A Possible 3-mercaptopyru 44.3 18 0.00061 29.6 3.5 37 186-226 94-132 (373)
259 1jr3_A DNA polymerase III subu 43.3 22 0.00076 28.3 3.9 39 75-114 118-156 (373)
260 3n70_A Transport activator; si 43.2 28 0.00097 23.7 4.0 36 78-114 78-113 (145)
261 3dkp_A Probable ATP-dependent 42.8 20 0.00067 26.8 3.4 39 186-224 97-135 (245)
262 3upu_A ATP-dependent DNA helic 42.1 36 0.0012 28.4 5.2 38 173-210 234-275 (459)
263 2qen_A Walker-type ATPase; unk 41.7 25 0.00085 27.6 4.0 35 78-113 130-170 (350)
264 3olh_A MST, 3-mercaptopyruvate 41.7 17 0.00059 28.6 2.9 46 176-225 240-289 (302)
265 2wlr_A Putative thiosulfate su 41.6 20 0.00067 29.8 3.4 45 177-225 345-393 (423)
266 2ri0_A Glucosamine-6-phosphate 41.6 96 0.0033 23.0 7.1 61 3-85 4-65 (234)
267 2v1u_A Cell division control p 41.2 21 0.00072 28.5 3.5 28 77-104 131-159 (387)
268 1qb0_A Protein (M-phase induce 40.9 20 0.00069 26.5 3.1 41 186-226 108-158 (211)
269 1fnn_A CDC6P, cell division co 40.9 10 0.00034 30.6 1.5 25 77-102 126-150 (389)
270 1yt8_A Thiosulfate sulfurtrans 40.1 18 0.00061 31.1 3.0 37 186-226 62-99 (539)
271 1gm5_A RECG; helicase, replica 39.5 21 0.00072 32.4 3.4 42 186-227 416-457 (780)
272 2ipc_A Preprotein translocase 38.8 33 0.0011 31.9 4.5 52 176-227 108-160 (997)
273 1z5z_A Helicase of the SNF2/RA 38.7 90 0.0031 23.9 6.6 72 2-84 115-191 (271)
274 1nkt_A Preprotein translocase 38.6 33 0.0011 31.7 4.5 52 176-227 140-192 (922)
275 3olh_A MST, 3-mercaptopyruvate 38.6 20 0.00067 28.3 2.8 46 177-226 94-146 (302)
276 4aby_A DNA repair protein RECN 38.5 24 0.00082 28.9 3.5 37 78-114 317-353 (415)
277 4b3f_X DNA-binding protein smu 38.0 20 0.00069 31.5 3.1 78 2-85 236-375 (646)
278 3auy_A DNA double-strand break 38.0 40 0.0014 27.3 4.7 40 75-114 303-343 (371)
279 3tp9_A Beta-lactamase and rhod 37.9 21 0.00073 30.0 3.1 36 186-225 426-462 (474)
280 1jr3_D DNA polymerase III, del 37.9 37 0.0013 26.9 4.4 43 74-117 74-117 (343)
281 3qhq_A CSN2, SAG0897 family cr 37.7 53 0.0018 24.9 4.9 48 173-224 147-199 (229)
282 3s5u_A Putative uncharacterize 37.2 55 0.0019 24.6 4.9 47 174-224 148-199 (220)
283 3s99_A Basic membrane lipoprot 36.9 1E+02 0.0035 24.8 6.9 55 29-84 61-118 (356)
284 3czc_A RMPB; alpha/beta sandwi 36.5 87 0.003 20.3 6.4 55 2-61 21-77 (110)
285 1w5s_A Origin recognition comp 36.4 23 0.00077 28.7 3.0 14 77-90 139-152 (412)
286 2fna_A Conserved hypothetical 36.3 45 0.0016 26.1 4.7 35 78-113 139-176 (357)
287 2chq_A Replication factor C sm 36.2 19 0.00066 27.9 2.4 16 75-90 101-116 (319)
288 1okg_A Possible 3-mercaptopyru 36.2 24 0.00081 28.8 3.0 35 187-225 246-281 (373)
289 3h75_A Periplasmic sugar-bindi 35.8 1.6E+02 0.0053 23.0 15.4 34 176-210 194-227 (350)
290 1tvm_A PTS system, galactitol- 35.5 53 0.0018 21.5 4.2 11 50-60 68-78 (113)
291 1rif_A DAR protein, DNA helica 35.5 61 0.0021 24.8 5.2 56 172-227 139-197 (282)
292 1gku_B Reverse gyrase, TOP-RG; 35.4 65 0.0022 30.3 6.1 57 172-228 82-144 (1054)
293 3f4a_A Uncharacterized protein 35.1 16 0.00054 26.1 1.6 36 187-226 104-147 (169)
294 3eie_A Vacuolar protein sortin 35.0 49 0.0017 26.0 4.7 14 77-90 111-124 (322)
295 3hu3_A Transitional endoplasmi 34.6 39 0.0013 28.7 4.2 41 78-118 299-349 (489)
296 2bkx_A Glucosamine-6-phosphate 34.2 1.2E+02 0.0042 22.5 6.7 62 3-84 3-68 (242)
297 1vl1_A 6PGL, 6-phosphogluconol 34.1 50 0.0017 24.9 4.4 42 174-221 179-220 (232)
298 3jx9_A Putative phosphoheptose 33.5 74 0.0025 22.8 4.9 35 185-223 76-112 (170)
299 2qby_B CDC6 homolog 3, cell di 33.4 22 0.00074 28.5 2.4 36 79-115 136-172 (384)
300 2qby_A CDC6 homolog 1, cell di 32.9 37 0.0013 27.0 3.7 15 77-91 129-143 (386)
301 3eb9_A 6-phosphogluconolactona 32.8 37 0.0013 26.2 3.5 37 172-210 198-234 (266)
302 3oc6_A 6-phosphogluconolactona 32.7 50 0.0017 25.2 4.2 35 173-209 185-219 (248)
303 1e69_A Chromosome segregation 32.7 45 0.0015 26.3 4.1 40 75-114 240-279 (322)
304 8tfv_A Protein (thanatin); bac 32.7 9.9 0.00034 16.4 0.1 9 190-198 7-15 (21)
305 3tx2_A Probable 6-phosphogluco 32.3 49 0.0017 25.3 4.1 35 173-209 187-221 (251)
306 1c25_A CDC25A; hydrolase, cell 31.8 36 0.0012 23.6 3.1 40 187-226 87-136 (161)
307 3ico_A 6PGL, 6-phosphogluconol 30.2 48 0.0016 25.7 3.7 35 173-209 203-237 (268)
308 2qz4_A Paraplegin; AAA+, SPG7, 30.1 63 0.0022 24.1 4.4 14 77-90 99-112 (262)
309 1b4b_A Arginine repressor; cor 28.4 68 0.0023 19.1 3.4 25 186-210 46-70 (71)
310 3css_A 6-phosphogluconolactona 27.4 85 0.0029 24.1 4.7 36 173-210 200-235 (267)
311 3e2i_A Thymidine kinase; Zn-bi 27.4 65 0.0022 24.2 3.8 26 75-101 100-125 (219)
312 3b9p_A CG5977-PA, isoform A; A 27.1 74 0.0025 24.3 4.4 16 76-91 113-128 (297)
313 1f2t_B RAD50 ABC-ATPase; DNA d 26.8 89 0.003 21.5 4.3 42 75-116 80-121 (148)
314 1sxj_A Activator 1 95 kDa subu 26.5 83 0.0028 26.7 4.9 41 75-117 147-189 (516)
315 3h11_A CAsp8 and FADD-like apo 26.4 19 0.00064 28.1 0.8 37 186-227 42-78 (272)
316 3euj_A Chromosome partition pr 26.1 68 0.0023 27.2 4.2 36 75-113 413-448 (483)
317 2a2k_A M-phase inducer phospha 25.8 44 0.0015 23.6 2.7 41 186-226 88-138 (175)
318 2pju_A Propionate catabolism o 25.7 59 0.002 24.5 3.4 55 2-57 15-69 (225)
319 2qp9_X Vacuolar protein sortin 25.6 84 0.0029 25.1 4.6 15 76-90 143-157 (355)
320 3hjh_A Transcription-repair-co 25.2 1.6E+02 0.0055 24.9 6.4 48 163-211 16-63 (483)
321 4ad8_A DNA repair protein RECN 24.6 34 0.0012 29.1 2.1 36 78-113 419-454 (517)
322 3cf0_A Transitional endoplasmi 24.6 62 0.0021 25.1 3.5 14 77-90 109-122 (301)
323 1z63_A Helicase of the SNF2/RA 24.6 1.5E+02 0.0053 24.6 6.2 41 183-226 82-122 (500)
324 2w58_A DNAI, primosome compone 24.5 52 0.0018 23.5 2.9 14 75-88 114-127 (202)
325 3r2u_A Metallo-beta-lactamase 24.5 16 0.00054 30.8 0.0 37 186-226 424-461 (466)
326 2orv_A Thymidine kinase; TP4A 24.2 1E+02 0.0036 23.3 4.5 26 75-103 89-114 (234)
327 1hzm_A Dual specificity protei 23.8 36 0.0012 23.3 1.8 37 186-226 91-137 (154)
328 3r8r_A Transaldolase; pentose 23.6 1.9E+02 0.0066 21.4 5.8 55 9-68 142-196 (212)
329 2vsw_A Dual specificity protei 23.6 16 0.00056 25.2 -0.1 37 186-226 77-122 (153)
330 2p5m_A Arginine repressor; alp 23.3 94 0.0032 19.1 3.5 35 175-209 37-81 (83)
331 1xx6_A Thymidine kinase; NESG, 23.1 58 0.002 23.7 2.9 13 76-88 81-93 (191)
332 2bjv_A PSP operon transcriptio 23.0 62 0.0021 24.4 3.2 27 76-103 100-126 (265)
333 1w1w_A Structural maintenance 22.8 68 0.0023 26.4 3.6 40 75-114 354-394 (430)
334 1qys_A TOP7; alpha-beta, novel 22.7 1.4E+02 0.0047 18.2 4.6 57 161-217 16-77 (106)
335 2j9r_A Thymidine kinase; TK1, 22.6 66 0.0023 24.0 3.1 24 76-100 101-124 (214)
336 2ehv_A Hypothetical protein PH 22.5 42 0.0015 24.8 2.1 47 75-121 134-185 (251)
337 3h11_B Caspase-8; cell death, 21.9 74 0.0025 24.6 3.4 14 197-210 48-61 (271)
338 3e4c_A Caspase-1; zymogen, inf 21.3 1.1E+02 0.0039 24.0 4.4 35 188-227 61-106 (302)
339 3uk6_A RUVB-like 2; hexameric 21.2 1.2E+02 0.0043 23.8 4.8 13 78-90 191-203 (368)
340 3vfd_A Spastin; ATPase, microt 21.2 79 0.0027 25.5 3.6 13 78-90 209-221 (389)
341 3m9w_A D-xylose-binding peripl 20.8 1.1E+02 0.0036 23.5 4.2 35 176-210 176-210 (313)
342 3d8b_A Fidgetin-like protein 1 20.8 69 0.0023 25.6 3.1 15 76-90 176-190 (357)
343 2q5c_A NTRC family transcripti 20.8 1.6E+02 0.0054 21.3 4.9 40 28-68 119-158 (196)
344 2h54_A Caspase-1; allosteric s 20.6 1.3E+02 0.0046 21.5 4.3 12 176-187 68-79 (178)
345 1ji0_A ABC transporter; ATP bi 20.5 55 0.0019 24.6 2.4 43 74-116 155-197 (240)
346 3nhm_A Response regulator; pro 20.4 1.7E+02 0.0059 18.5 9.4 83 29-119 5-89 (133)
347 2zpa_A Uncharacterized protein 20.4 1.3E+02 0.0046 26.7 5.1 37 74-118 253-289 (671)
348 1xxa_A ARGR, arginine represso 20.3 82 0.0028 19.2 2.7 25 186-210 49-73 (78)
349 1ojl_A Transcriptional regulat 20.3 74 0.0025 24.8 3.2 24 78-102 98-121 (304)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3e-34 Score=245.27 Aligned_cols=206 Identities=29% Similarity=0.453 Sum_probs=185.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||++||.|+++++++++... ++++..++||.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~l 207 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDR-TFITFEDTRFV 207 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSCCCTTCCEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHh-hcCCCEEEEChHHHHHHHHh-CCcccccCCeE
Confidence 37999999999999999999998765 78999999999887777776 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhC--CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l--~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||||++++++|.+.+..|+..+ +...|+++||||+++.+..++..++.++..+.+... ...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~~~ 272 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV---------------GGA 272 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST---------------TCC
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc---------------ccc
Confidence 999999999999999999999885 578999999999999999999999999998887665 445
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..++.+.+..+...+|...+.+++.....+ +||||++++.|+.++..|.+. |+++..+||+++++|
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~ 338 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQ 338 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHH
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHH
Confidence 678889999999999999999999887654 999999999999999999988 999999999998753
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=227.06 Aligned_cols=205 Identities=33% Similarity=0.508 Sum_probs=181.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.+++++... ++++..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+.+++++|
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iV 180 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMER-GKIGLDFCKYLV 180 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHh-hCCCCEEEEChHHHHHHHHc-CCcChhhCcEEE
Confidence 7999999999999999999998765 78999999999888777777 57899999999999999988 778899999999
Q ss_pred EeccccccccccHHHHHHHHHh--CCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 82 LDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~--l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+||||++.+++|...+..++.. ++. ..|++++|||+++.+..+...++.++..+..... ..
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 245 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---------------GS 245 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------------
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---------------CC
Confidence 9999999999999999999885 333 6799999999999999999999999988777655 45
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.++.+.+..++..+|...+.++++.. ..+++||||++++.|+.++..|.+. |+++..+||+++++
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 313 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQR 313 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHH
Confidence 6778888899999999999999999876 5679999999999999999999988 99999999999864
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.2e-32 Score=227.86 Aligned_cols=206 Identities=30% Similarity=0.495 Sum_probs=184.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+.+++++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHh-hcCCCEEEcCHHHHHHHHHh-CCccHhheeEE
Confidence 37999999999999999999998776 78999999998888777776 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+...++.+|..+..... .....
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 248 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---------------ELTLE 248 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---------------GCSCT
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999987766554 45567
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+..++..+ |...+..++.....+++||||++++.|+.++..|.+. |+++..+||+++++
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQK 313 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred CceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHH
Confidence 7888888877665 8899999998888889999999999999999999988 99999999999864
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.2e-30 Score=219.48 Aligned_cols=208 Identities=24% Similarity=0.447 Sum_probs=186.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++....+++++..+.|+.....+...+..+.++|+|+||+++..++.. ..+.+.+++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 7999999999999999999998877789999999998887777777666789999999999999887 777899999999
Q ss_pred Eecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++.++ ++...+..++...+...|++++|||+++.+..+...++.+|..+...... .....
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 223 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET--------------KLTLH 223 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC--------------CCCCT
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc--------------ccCcc
Confidence 9999999884 78889999999999999999999999999999999999999887665442 23456
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+..+...+|...+..+++....+++||||+++++|+.++..|.+. |+++..+||+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 287 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQE 287 (391)
T ss_dssp TCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred cceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHH
Confidence 77888888888899999999999888899999999999999999999988 99999999999864
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=6.9e-31 Score=222.41 Aligned_cols=207 Identities=31% Similarity=0.518 Sum_probs=183.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... +..+..+.|+.....+...+..++++|+|+||+++.+++.. +.+.+.+++++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~v 187 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 187 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEE
Confidence 37999999999999999999998776 78889999998888777777568899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..++..++...|++++|||+++.+..+...++.++..+..... .....
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 252 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE---------------ELTLE 252 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC---------------CCCTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC---------------ccCCC
Confidence 999999999999999999999999999999999999999999999999999988776555 45667
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+......+ |...+..++.....+++||||+++++|+.++..|.+. |+++..+||+|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~ 317 (414)
T 3eiq_A 253 GIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQK 317 (414)
T ss_dssp SCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHH
T ss_pred CceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHH
Confidence 7777777776554 8899999999888889999999999999999999988 99999999999864
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1.1e-29 Score=214.40 Aligned_cols=204 Identities=29% Similarity=0.451 Sum_probs=181.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.... ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +...+.+++++|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHh-CCcccccCCEEE
Confidence 7999999999999999999998776 78999999988877666655 57899999999999999887 667889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++.+.+|...+..+...++...|++++|||++..+......++.+|..+..... ....+
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 232 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------------LTLKG 232 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------------CBCTT
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------------cccCC
Confidence 99999999999999999999999999999999999999999999999988876644332 34567
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.+++..++...|...+..+++....+++||||+++++|+.++..|.+. |+++..+||+|+++
T Consensus 233 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 295 (400)
T 1s2m_A 233 ITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQ 295 (400)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHH
T ss_pred ceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHH
Confidence 7888888888889999999999888889999999999999999999998 99999999999864
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=5.2e-30 Score=215.58 Aligned_cols=206 Identities=29% Similarity=0.452 Sum_probs=121.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.++++.... ++++..+.|+....++...+ .+++|+|+||+++...+.. +.+.+.+++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhc--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999998877666665 3689999999999999987 77888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..+...++...|++++|||+++.+..+...++.+|..+..... ...+.
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 231 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD---------------ELTLE 231 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999988876655 34556
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.+..+...+ |...+..+++....+++||||+++++|+.++..|.+. |+++..+||++++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 297 (394)
T 1fuu_A 232 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQE 297 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHH
Confidence 6666666666554 7888888888777889999999999999999999988 999999999998764
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.4e-29 Score=214.10 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=178.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.++++...++++.+....++....... ..+++|+|+||+++..++...+.+.+++++++
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 37999999999999999999998877778888888776543222 35689999999999999866466778999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+..... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 237 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 237 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG---------------GSSC
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999998877665 4566
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+.+..+.. ..|...+..++.....+++||||++++.|+.++..|.+. |+++..+||+|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQ 304 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHH
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHH
Confidence 777777777655 468888999998888889999999999999999999988 999999999998653
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=3.8e-30 Score=222.39 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=117.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||++||.|++++++++....+++.+....++....... ..+++|+|+||+++.+++.+.+.+.+++++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 47999999999999999999998877778888887776543221 35679999999999999976466778999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .+|...+..+.+.++...|++++|||+++.+..+...++.+|..+..... ....
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 304 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 304 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---------------ccCc
Confidence 9999999987 68888999999999999999999999999999999999999998887766 4556
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+.+..+.. ..|...+..++......++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~ 371 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQ 371 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHH
Confidence 677777777664 568888888888777889999999999999999999988 999999999998864
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.7e-28 Score=202.21 Aligned_cols=199 Identities=28% Similarity=0.462 Sum_probs=174.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+.+.++++.... ++++..+.|+.....+...+ .+++|+|+||+++...+.. +.+.+.+++++|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKAL--KNANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHH--HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhc--CCCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 7999999999999999999998665 78899999998877766666 3789999999999999987 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++.++++...+..++..++...+++++|||+++........++.++..+... ...+
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 213 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-------------------INAN 213 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-------------------SSSS
T ss_pred EeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-------------------CCCC
Confidence 999999999999999999999999999999999999999989998888877655432 2346
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.+.+..+...+|...+..+++ ....++||||+++++|+.++..|.+. |+++..+||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 275 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQS 275 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHH
T ss_pred ceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHH
Confidence 7778888888889999988886 45578999999999999999999988 99999999999864
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=2.1e-28 Score=216.07 Aligned_cols=216 Identities=28% Similarity=0.396 Sum_probs=170.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhh---CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+.+.++++... .+.+.+..+.|+.....+...+...+++|+|+||+++.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 3799999999999999999998752 3357888899999888888888677899999999999998876234568899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-------CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-------LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-------~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++|+||||++++++|.+.+..|+..++. ..|+++||||+++.+..+...++.++..+.......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~-------- 248 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 248 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc--------
Confidence 99999999999999999999999877643 679999999999999999999999988766543311
Q ss_pred hccccCCCCccceEEEEEcCCCC-cH----HHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 151 QQLASSKTPLGLHLEYLECEPDE-KP----SQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~-k~----~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
........+.+.+...+... +. ..+...+.. ....++||||+|++.|+.++..|.+.. ..|+++..+||+
T Consensus 249 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~-~~~~~v~~~hg~ 324 (579)
T 3sqw_A 249 ---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF-KKDLPILEFHGK 324 (579)
T ss_dssp ---SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHH-TTTSCEEEESTT
T ss_pred ---cccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhh-cCCCcEEEecCC
Confidence 00234455666666655432 22 223333333 466799999999999999999998763 348899999999
Q ss_pred CCCC
Q 026925 225 MKQV 228 (230)
Q Consensus 225 ~~~~ 228 (230)
|+++
T Consensus 325 ~~~~ 328 (579)
T 3sqw_A 325 ITQN 328 (579)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9875
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=5.8e-28 Score=212.49 Aligned_cols=215 Identities=28% Similarity=0.395 Sum_probs=169.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh---CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+|||+||++||.|+++.++++... .+...+..+.|+.....+...+...+++|+|+||+++.+++.......+++++
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 228 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 228 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccce
Confidence 799999999999999999998653 23567888899988888887776778999999999999988762344688999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-------CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-------~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++|+||||++++++|.+.+..+...++ ...|++++|||+++.+..+...++.++..+.......
T Consensus 229 ~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 299 (563)
T 3i5x_A 229 YKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK--------- 299 (563)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS---------
T ss_pred EEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCC---------
Confidence 999999999999999999999887764 3678999999999999999999999888766543311
Q ss_pred ccccCCCCccceEEEEEcCCCC-cHH----HHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDE-KPS----QLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~-k~~----~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
........+.+.+...+... +.. .+...+.. ....++||||+|++.|+.++..|.+.. ..|+++..+||+|
T Consensus 300 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~ 376 (563)
T 3i5x_A 300 --NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF-KKDLPILEFHGKI 376 (563)
T ss_dssp --SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHH-TTTSCEEEESTTS
T ss_pred --CCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhc-cCCceEEEecCCC
Confidence 00234455666666655432 222 22233333 567899999999999999999998863 3489999999999
Q ss_pred CCC
Q 026925 226 KQV 228 (230)
Q Consensus 226 ~~~ 228 (230)
+++
T Consensus 377 ~~~ 379 (563)
T 3i5x_A 377 TQN 379 (563)
T ss_dssp CHH
T ss_pred CHH
Confidence 875
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=2.3e-28 Score=205.38 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=173.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++.+....++...... ..+++|+|+||+++..++.. +.+.+.+++++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999998665 6777777766543221 35789999999999999987 77889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+..... ....
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 214 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---------------EVNV 214 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---------------GCSC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999888766555 4456
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..+.+.+..+.. ..|...+..++.....+++||||++++.|+.++..|.+. |+++..+||+|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 215 DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQ 280 (395)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred ccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHH
Confidence 667777777644 467788888888888899999999999999999999988 99999999999864
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2e-26 Score=189.68 Aligned_cols=196 Identities=29% Similarity=0.479 Sum_probs=164.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... +.++..+.|+.....+...+ ..++|+|+||+++.+++.. +.+.+.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSK-GVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHT-TSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHc-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999998877766665 4599999999999999887 77788999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..++..++...+++++|||+++.+......++.++..+... ....
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 195 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC------------------IGLA 195 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS------------------GGGG
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc------------------cccC
Confidence 9999999999999999999999999999999999999999999999999888766321 2345
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++.+.+.......+. ....+.....+++||||+++++|+.++..|. ++..+||+++++
T Consensus 196 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~ 253 (337)
T 2z0m_A 196 NVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQS 253 (337)
T ss_dssp GEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHH
T ss_pred CceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHH
Confidence 566777776655433 3366777788899999999999999998876 356899999864
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.8e-27 Score=204.99 Aligned_cols=203 Identities=28% Similarity=0.396 Sum_probs=155.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++|+++|+.|+.+.++++.... ++.+....++...... ..+++|+|+||+++...+.. +.+.+.+++++
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lI 263 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGA-----KIDAQIVIGTPGTVMDLMKR-RQLDARDIKVF 263 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccc-----cCCCCEEEECHHHHHHHHHc-CCccccCCCEE
Confidence 37999999999999999999997655 5665555554332211 35789999999999999887 77889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+..... ....
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 328 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE---------------ELSV 328 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC---------------C---
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc---------------cCCc
Confidence 9999999987 67999999999999999999999999999999999999999888766555 3455
Q ss_pred ccceEEEEEcC-CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECE-PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+.+.... ...|...+..++.....+++||||++++.|+.++..|.+. |+.+.++||++++++
T Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~ 395 (508)
T 3fho_A 329 EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQ 395 (508)
T ss_dssp -CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CT
T ss_pred ccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHH
Confidence 56666666664 4457788888888778889999999999999999999987 999999999998764
No 16
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=3.8e-26 Score=180.59 Aligned_cols=137 Identities=35% Similarity=0.588 Sum_probs=126.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.++++.... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~l 180 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDL-ERGVEICIATPGRLIDFLEC-GKTNLRRTTYL 180 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCCCcccccEE
Confidence 37999999999999999999999887 89999999999888777777 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..+++.+++..|+++||||+++.+..+++.++.+|..|.+...
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999988654
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=1.4e-26 Score=196.57 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=150.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+++.+++++. . ++++..+.|+.+. ..+...+..+.++|+|+||+++.+++.. +.+.++
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~ 140 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 140 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccc
Confidence 479999999999999999999876 3 8899999999887 5556666555699999999999888764 667899
Q ss_pred cEEEEeccccccc-----------cccHHH-HHHHHHhCC-----------CCCcEEEEeec-CchHHH-HHHHhccCCC
Q 026925 78 EILVLDEADRLLD-----------MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (230)
Q Consensus 78 ~~lVvDEad~l~~-----------~~~~~~-~~~i~~~l~-----------~~~q~i~~SAt-~~~~~~-~~~~~~~~~~ 132 (230)
+++|+||||++.+ .+|.+. +..+++.++ ...|++++||| .++.+. .+...++.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 218 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 218 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--
Confidence 9999999986653 667777 788888876 78999999999 565443 23333322
Q ss_pred eEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc
Q 026925 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV 212 (230)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~ 212 (230)
+..... .....++.+.+... +|...+..+++. .++++||||++++.|+.++..|.+.
T Consensus 219 --~~~~~~---------------~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-- 275 (414)
T 3oiy_A 219 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRF-- 275 (414)
T ss_dssp --CCSSCC---------------CCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHT--
T ss_pred --cCcCcc---------------ccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHc--
Confidence 111112 34556777777665 577788888877 3489999999999999999999988
Q ss_pred cCCceEE-eccCC
Q 026925 213 LKSLSLI-PLHGK 224 (230)
Q Consensus 213 ~~g~~~~-~lh~~ 224 (230)
|+++. .+||+
T Consensus 276 --~~~~~~~~h~~ 286 (414)
T 3oiy_A 276 --KFNVGETWSEF 286 (414)
T ss_dssp --TCCEEESSSCH
T ss_pred --CCceehhhcCc
Confidence 99998 99984
No 18
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=4.6e-25 Score=175.44 Aligned_cols=137 Identities=36% Similarity=0.591 Sum_probs=121.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-CCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 37999999999999999999998765 78888999998877776666 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhC--CC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL--PK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l--~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..+++.+ +. ..|++++|||+++.+..+++.++.+|..+.+...
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999999854 44 7899999999999999999999999999988766
No 19
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=182.66 Aligned_cols=135 Identities=27% Similarity=0.416 Sum_probs=120.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||++||.|++++++.++..++++++....|+....... ..+++|+||||+++.+++.+.+.+.+++++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 48999999999999999999999877778988888877643322 46789999999999999976466789999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEec
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~ 139 (230)
|+||||++++ .+|...+..|.+.++..+|+++||||+++.+..++..++.+|..|.+..
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999997 7899999999999999999999999999999999999999999988754
No 20
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=5.7e-25 Score=193.94 Aligned_cols=203 Identities=17% Similarity=0.144 Sum_probs=151.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----HhcCCcEEEEcChHHH---HHHhh-CCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----EEEGANLLIGTPGRLY---DIMER-MDVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l-----~~~~~~Iiv~TP~~l~---~~l~~-~~~~ 72 (230)
+|||+|+++|+.|+.+.++++ ++++..+.|+....+....+ ..++++|+|+||+++. .++.. ....
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 799999999999999999886 57888888887765443332 2467999999999874 22221 0234
Q ss_pred cCCcccEEEEeccccccccc--cHHHHHH--HHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCccccccc
Q 026925 73 DFRNLEILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSA 148 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~~--~~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 148 (230)
.+.+++++||||||++.+|| |.+.+.. ++....+..+++++|||+++.+......++..+....+...
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-------- 233 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-------- 233 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--------
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--------
Confidence 57789999999999999988 7776655 34444457899999999999988888888876654444333
Q ss_pred chhccccCCCCccceEEEEEcCC--CCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 149 SSQQLASSKTPLGLHLEYLECEP--DEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....++...+..... .++...+.++++. ..++++||||+|++.|++++..|.+. |+++..+||+|
T Consensus 234 --------~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l 301 (591)
T 2v1x_A 234 --------FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANL 301 (591)
T ss_dssp --------CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred --------CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCC
Confidence 233445444443322 2345667777754 36789999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
++++
T Consensus 302 ~~~~ 305 (591)
T 2v1x_A 302 EPED 305 (591)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8653
No 21
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.92 E-value=5.8e-25 Score=172.20 Aligned_cols=131 Identities=32% Similarity=0.550 Sum_probs=115.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.++++.. .++++..+.|+.....+...+ .++++|+|+||+++..++.. +.+.+++++++|
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHH-HSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 79999999999999999999863 278899999988877777776 57899999999999999887 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
+||||++.+++|...+..++..++.+.|++++|||+++.++.++..++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998775
No 22
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=172.03 Aligned_cols=135 Identities=38% Similarity=0.665 Sum_probs=122.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+.+...+.+.+++++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH-HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 37999999999999999999998876 78999999998877666666 57899999999999999886456778999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+++.++.+|..+.+
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999998765
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.7e-25 Score=204.07 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=137.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++||.|+++.+.++.. .+..++|+.+. +.+++|+|+||++|.+++.. +...+++++++|
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVV 295 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 295 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHc-CccccccCCEEE
Confidence 79999999999999999998753 56778887763 46799999999999999988 777789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH--HHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|||||++.++++...+..++..++...|++++|||+++. +..+.......|..+..... .+
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~-----------------rp 358 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-----------------RP 358 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC-----------------CS
T ss_pred EhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-----------------Cc
Confidence 999999999999999999999999999999999999864 34556666666665544333 22
Q ss_pred ccceEEEEEcCC-------------------------------------------------------CCcHHHHHHHHHh
Q 026925 160 LGLHLEYLECEP-------------------------------------------------------DEKPSQLVDLLIK 184 (230)
Q Consensus 160 ~~i~~~~~~~~~-------------------------------------------------------~~k~~~l~~ll~~ 184 (230)
..++++++.... ..++..+...+..
T Consensus 359 ~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~ 438 (1108)
T 3l9o_A 359 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK 438 (1108)
T ss_dssp SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 223333322110 1122334445556
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+..++||||++++.|+.++..|...
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 67789999999999999999999775
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.92 E-value=1.3e-24 Score=170.60 Aligned_cols=134 Identities=31% Similarity=0.535 Sum_probs=121.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++....+++++..+.|+....++...+ .+++|+|+||+++..++.. +.+.+++++++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~l 170 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLF 170 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--TSCSEEEECHHHHHHHHHT-TSSCGGGCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--cCCCEEEECHHHHHHHHhc-CCcccccCCEE
Confidence 37999999999999999999998766678999999998877666555 5799999999999999987 77888999999
Q ss_pred EEeccccccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||++.+++ |...+..+++.++...|++++|||+++.+..++..++.+|..+.+
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999999987 999999999999999999999999999999999999999988754
No 25
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.92 E-value=9.3e-25 Score=172.14 Aligned_cols=136 Identities=33% Similarity=0.592 Sum_probs=112.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+..++++|+|+||+++.+++.. +.+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~l 177 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMF 177 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEE
Confidence 37999999999999999999998766 78888888888777776666555599999999999999987 77888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+++.++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999988654
No 26
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=3.4e-24 Score=165.13 Aligned_cols=132 Identities=31% Similarity=0.571 Sum_probs=121.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+++.++++....+++++..+.|+....++...+ ..+++|+|+||+++...+.. +...+++++++|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lV 151 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMIV 151 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc-CCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877678999999998877776666 57899999999999999987 777899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
+||||++.+.+|...+..+++.+++..|++++|||+++.+..+++.++.+|..+
T Consensus 152 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 152 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999999999999999999999999999999999765
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.92 E-value=8.5e-25 Score=204.04 Aligned_cols=192 Identities=18% Similarity=0.166 Sum_probs=153.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+++.+++++ .. ++++..++|+.+. ..+...+..+.++|+|+||+++.+++.. +.++++
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l 197 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 197 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCc
Confidence 47999999999999999999987 43 8999999999887 5666677555699999999999888764 667899
Q ss_pred cEEEEecccccc----------c-cccHHH-HHHHHHhCC-----------CCCcEEEEeec-CchHHHH-HHHhccCCC
Q 026925 78 EILVLDEADRLL----------D-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVEE-LSKAGLRNP 132 (230)
Q Consensus 78 ~~lVvDEad~l~----------~-~~~~~~-~~~i~~~l~-----------~~~q~i~~SAt-~~~~~~~-~~~~~~~~~ 132 (230)
+++|+||||++. + +||... +..+++.++ ...|+++|||| .++.+.. +...++.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 999999996654 4 788888 889998887 78999999999 5655442 3333322
Q ss_pred eEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc
Q 026925 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV 212 (230)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~ 212 (230)
+.+... ...+.++.+.++.+ +|...+..+++..+ +++||||++++.|+.++..|...
T Consensus 276 --i~v~~~---------------~~~~~~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~-- 332 (1104)
T 4ddu_A 276 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRF-- 332 (1104)
T ss_dssp --CCCCBC---------------CCCCCCEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHT--
T ss_pred --EEeccC---------------CCCcCCceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhC--
Confidence 222222 34567788877766 57788888888744 89999999999999999999988
Q ss_pred cCCceEE-eccCC
Q 026925 213 LKSLSLI-PLHGK 224 (230)
Q Consensus 213 ~~g~~~~-~lh~~ 224 (230)
|+++. .+||+
T Consensus 333 --g~~~~~~lhg~ 343 (1104)
T 4ddu_A 333 --KFNVGETWSEF 343 (1104)
T ss_dssp --TCCEEESSSSH
T ss_pred --CCCeeeEecCc
Confidence 99998 99983
No 28
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=171.46 Aligned_cols=131 Identities=40% Similarity=0.649 Sum_probs=118.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+++++... +..+..+.|+.....+...+ ..+++|+|+||+++..++.....+.+++++++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHH-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHh-cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 37999999999999999999998776 78889999998887777776 46799999999999999887455789999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~ 133 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.++.+++.++.++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999988654
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=3.6e-24 Score=166.72 Aligned_cols=135 Identities=24% Similarity=0.532 Sum_probs=122.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++....+++++..+.|+.....+...+..+.++|+|+||+++..++.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 162 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 162 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEE
Confidence 37999999999999999999998877688999999998887777777666789999999999999987 77889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
|+||||++.+ .+|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999987 5788999999999999999999999999999999999999998774
No 30
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=167.85 Aligned_cols=136 Identities=43% Similarity=0.658 Sum_probs=120.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... ++++..+.|+.....+...+ .+++|+|+||+++...+.....+.+.+++++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37999999999999999999998765 68999999988776666555 6799999999999999887446778999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~ 139 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.+.+
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999887643
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.91 E-value=6.2e-24 Score=185.20 Aligned_cols=196 Identities=19% Similarity=0.156 Sum_probs=146.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+|||+|+++|+.|+.+.++.+ ++++..+.++....+.. ..+..++++|+++||+++...... ..+...+++
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~ 141 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCC
Confidence 689999999999999888875 67888888877654433 334457799999999998532111 224458899
Q ss_pred EEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhcc--CCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++||||||++.+|| |.+.+..+ ...+ +..+++++|||.++.+......++ .++..+. . .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~-~----------- 207 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S-S----------- 207 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C-C-----------
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C-C-----------
Confidence 99999999999987 66665544 4445 368999999999988766444443 3444332 1 1
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
....++. +...+..++...+..++....++++||||+|++.|+.++..|.+. |+++..+||+|+++
T Consensus 208 -----~~r~~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 208 -----FDRPNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENN 273 (523)
T ss_dssp -----CCCTTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred -----CCCCceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHH
Confidence 1223443 333345678888999998888889999999999999999999988 99999999999864
No 32
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.91 E-value=1.7e-24 Score=168.55 Aligned_cols=138 Identities=36% Similarity=0.582 Sum_probs=120.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||++||++|+.|+++.++++....+ ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc-CCCCCEEEeCHHHHHHHHHc-CCCCcCcc
Confidence 379999999999999999999987543 47888888887765554444 46799999999999999987 77889999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+++|+||||++.+++|...+..+++.++...|++++|||+++++..+++.++.+|..+.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999998876544
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-23 Score=190.45 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=133.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|++|+++.+.++.. ++..++|+.+. +.+++|+|+||+++..++.. +...+++++++|
T Consensus 132 vL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~--------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 132 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEE--------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCcc--------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 79999999999999999998753 67778887764 34689999999999999887 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHH--HHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE--ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
+||+|++.+++++..+..++..++...|++++|||+++... .........+..+...+. .+
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~-----------------rp 260 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-----------------RP 260 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC-----------------CS
T ss_pred EechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-----------------Cc
Confidence 99999999999999999999999999999999999987432 222223344554443322 12
Q ss_pred ccceEEEEEcC---------C----------------------------------------------CCcHHHHHHHHHh
Q 026925 160 LGLHLEYLECE---------P----------------------------------------------DEKPSQLVDLLIK 184 (230)
Q Consensus 160 ~~i~~~~~~~~---------~----------------------------------------------~~k~~~l~~ll~~ 184 (230)
..+.++++... . ...+..+...+..
T Consensus 261 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~ 340 (1010)
T 2xgj_A 261 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK 340 (1010)
T ss_dssp SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH
T ss_pred ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh
Confidence 22333322211 0 1223345555555
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+..++||||+|+..|+.++..|...
T Consensus 341 ~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 341 KKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 56679999999999999999999874
No 34
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.90 E-value=1.6e-23 Score=163.46 Aligned_cols=136 Identities=34% Similarity=0.592 Sum_probs=113.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++.... ++++..+.|+....++...+ ..++|+|+||+++...+.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~i 159 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 159 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999988776665555 3499999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..++..++...|++++|||+++.+..+.+.++.+|..+.+..+
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999998876554
No 35
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.90 E-value=3.1e-23 Score=159.72 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=118.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+++.++++.. ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +.+.+++++++|
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iV 149 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQ-GVLDLSRVEVAV 149 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHh-hCCCCEEEECHHHHHHHHHc-CCcchhhceEEE
Confidence 79999999999999999999864 36788888888776666666 46899999999999999988 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
+||||++.+++|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.+
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999999999999988764
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=1.6e-24 Score=193.63 Aligned_cols=221 Identities=13% Similarity=0.155 Sum_probs=152.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|+||+||++||.|+..++..+...+ ++++..+.||.+...+.. ..+|||+||||++| .+++... +.+.+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~---~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKRE---AYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHH---HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHH---hcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 47999999999999999999999988 899999999987654332 24699999999999 6666541 23567
Q ss_pred CcccEEEEecccccc-ccc---------------cHHHHHHHHHhCC---------CCCcEE-----------------E
Q 026925 75 RNLEILVLDEADRLL-DMG---------------FQKQISYIISRLP---------KLRRTG-----------------L 112 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~~---------------~~~~~~~i~~~l~---------~~~q~i-----------------~ 112 (230)
+++.++|+||||.|+ +.+ |...+..|++.++ +.+|+. +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 999999999999998 553 7789999999997 367887 8
Q ss_pred EeecCch---HHHHH--HHhccC-CCeEE------EEeccCccccccc---------------chhccccCC--------
Q 026925 113 FSATQTE---AVEEL--SKAGLR-NPVRV------EVRAESKSHHVSA---------------SSQQLASSK-------- 157 (230)
Q Consensus 113 ~SAt~~~---~~~~~--~~~~~~-~~~~i------~~~~~~~~~~~~~---------------~~~~~~~~~-------- 157 (230)
||||.+. ++... +..++. +...+ .+-++.....++. ......+..
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence 9999874 34333 223333 22111 1111100000000 000000000
Q ss_pred ---------------------------------CCcc---c---eEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCc
Q 026925 158 ---------------------------------TPLG---L---HLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMT 196 (230)
Q Consensus 158 ---------------------------------~~~~---i---~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t 196 (230)
.|.+ + ...++.....+|...+...+.. ..++++||||+|
T Consensus 362 ~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0111 0 0113344556788888888864 356799999999
Q ss_pred hhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 197 CACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 197 ~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.++.++..|... |+++.++||++.++|
T Consensus 442 ~~~se~Ls~~L~~~----gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 442 VETSELISKLLKNK----GIPHQVLNAKNHERE 470 (844)
T ss_dssp HHHHHHHHHHHHTT----TCCCEEECSSCHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEeeCCccHHH
Confidence 99999999999988 999999999986543
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=4.2e-24 Score=190.51 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=124.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC-----cccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~-----~~~~ 74 (230)
+|+||+||++||.|++.++..+...+ ++++..+.||.+... ..+ ..++||+||||++| .++++..- ...+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~--r~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~ 192 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPA--KRE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHH--HHH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHH--HHH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcc
Confidence 47999999999999999999999988 899999999987643 333 34699999999999 78877521 2567
Q ss_pred CcccEEEEecccccc-cc---------------ccHHHHHHHHHhCCC--------------------CCcEE-------
Q 026925 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLPK--------------------LRRTG------- 111 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~---------------~~~~~~~~i~~~l~~--------------------~~q~i------- 111 (230)
++++++|+||||.|+ +. +|...+..|+..+++ .+|+.
T Consensus 193 ~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~ 272 (853)
T 2fsf_A 193 RKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLV 272 (853)
T ss_dssp CSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------------------------------------
T ss_pred cCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHH
Confidence 999999999999998 43 356788888888874 45653
Q ss_pred -----------------EEeecCch---HHHHHH--HhccC--------CCeEEEEeccCcccccc--------------
Q 026925 112 -----------------LFSATQTE---AVEELS--KAGLR--------NPVRVEVRAESKSHHVS-------------- 147 (230)
Q Consensus 112 -----------------~~SAt~~~---~~~~~~--~~~~~--------~~~~i~~~~~~~~~~~~-------------- 147 (230)
+||||.++ ++...+ ..++. ++..+.+. +...+.++
T Consensus 273 ~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVd-e~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 273 LIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVD-EHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEe-cccCcccCCCccchhhhHHHHh
Confidence 89999764 222211 11121 11111110 00000000
Q ss_pred -cchhccccCCCCccce-----------------------------------------------EEEEEcCCCCcHHHHH
Q 026925 148 -ASSQQLASSKTPLGLH-----------------------------------------------LEYLECEPDEKPSQLV 179 (230)
Q Consensus 148 -~~~~~~~~~~~~~~i~-----------------------------------------------~~~~~~~~~~k~~~l~ 179 (230)
.......+..+...+. ..++.....+|...+.
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~ 431 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAII 431 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHH
Confidence 0000000011111111 1134445667888888
Q ss_pred HHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 180 DLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 180 ~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..+.. ..++|+||||+|++.++.++..|.+. |++..++||++.++
T Consensus 432 ~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~r 478 (853)
T 2fsf_A 432 EDIKERTAKGQPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHAN 478 (853)
T ss_dssp HHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHH
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHH
Confidence 88864 46789999999999999999999998 99999999997654
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.90 E-value=2.1e-24 Score=201.15 Aligned_cols=191 Identities=17% Similarity=0.162 Sum_probs=149.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCc----eEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~----~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~ 73 (230)
.+|||+||++||.|+++.+++++... ++ ++..++|+.+..++ ...+ .. ++|+|+||+++.+++.+
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l-~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNL-RN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSG-GG-CSEEEEEHHHHHHCSTT-----
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhc-cC-CCEEEEcHHHHHHHHHH-----
Confidence 47999999999999999999998876 67 89999998877653 3333 34 99999999999887754
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC-----------CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-----------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESK 142 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-----------~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~ 142 (230)
+++++++|+||||+++++ ...+..++..+ +...|++++|||+++. ..+...++.++..+.+...
T Consensus 173 L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-- 247 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-- 247 (1054)
T ss_dssp SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC--
T ss_pred hccCCEEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc--
Confidence 679999999999999984 56777777766 3568999999999987 5444444444443333332
Q ss_pred ccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEecc
Q 026925 143 SHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLH 222 (230)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh 222 (230)
.....++.+.+. +.+|...+..+++.. ++++||||+|++.|+.++..|... +++..+|
T Consensus 248 -------------~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lh 305 (1054)
T 1gku_B 248 -------------RITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVT 305 (1054)
T ss_dssp -------------EECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECT
T ss_pred -------------ccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEe
Confidence 334556777666 466777888888765 478999999999999999999763 8899999
Q ss_pred CCCC
Q 026925 223 GKMK 226 (230)
Q Consensus 223 ~~~~ 226 (230)
|++.
T Consensus 306 g~~~ 309 (1054)
T 1gku_B 306 ATKK 309 (1054)
T ss_dssp TSSS
T ss_pred ccHH
Confidence 9984
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=6.9e-23 Score=189.75 Aligned_cols=113 Identities=27% Similarity=0.296 Sum_probs=97.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+++.+.++. +++++..++|+... +..++|+|+||+++..++.. ....+++++++|
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvV 152 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKETF---DDVNIGLITGDVQI--------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVI 152 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEE
Confidence 7999999999999999998864 36788889888753 45689999999999999987 667789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
|||||++.++++...+..++..++...|++++|||+++.. .+..+
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~ 197 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANW 197 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHH
Confidence 9999999999999999999999999999999999998653 44443
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=163.63 Aligned_cols=139 Identities=29% Similarity=0.394 Sum_probs=115.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC-cccCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~-~~~~~~l~~ 79 (230)
.+||++||++||.|+++.+++++... ++++..+.|+.............+++|+|+||+++..++.... .+.++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 37999999999999999999998776 7888777766544333223334678999999999999998722 567899999
Q ss_pred EEEecccccccc---ccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 80 LVLDEADRLLDM---GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 80 lVvDEad~l~~~---~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+|+||||++.++ +|...+..++..+. ...|++++|||+++++..+++.++.+|..+.+...
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999884 68889999887764 57899999999999999999999999999887654
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=2.8e-22 Score=181.09 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=132.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+++.++++... ++++..++|+....... .++++|+|+||+++..++.. ....+++++++|
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 143 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW----LGKYDIIIATAEKFDSLLRH-GSSWIKDVKILV 143 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG----GGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCccccc----cCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEE
Confidence 799999999999999999776543 78999999976653321 25789999999999999887 666689999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.++++...+..++..++...|++++|||+++ ...+.. |+..+. +. .. ..+..
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~--~~----------------~rp~~ 202 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IV--SD----------------WRPVK 202 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EE--CC----------------CCSSE
T ss_pred EECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cC--CC----------------CCCCc
Confidence 99999998888999999999988778999999999986 355554 443211 11 11 11111
Q ss_pred ceEEE------EEcC-----CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 162 LHLEY------LECE-----PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 162 i~~~~------~~~~-----~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+...+ .... ...+...+.+.+. .++++||||++++.|+.++..|.+.
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 203 LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp EEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHH
Confidence 11111 1111 2345566666664 3579999999999999999999864
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=1.2e-22 Score=182.64 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=91.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+.+.. +.+ .+.+++++
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~v 140 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKK-GTIPSLSIFTLM 140 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHH-HHTCSEEEECHHHHHHHHHT-TSSCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccC-CceEEEEeCCccccccHHHh-ccCCCEEEECHHHHHHHHhc-CcccccccccEE
Confidence 7999999999999999999998655 78999999987655455555 35799999999999999987 655 78999999
Q ss_pred EEeccccccccc-cHHHHHHHHHh-----CCCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMG-FQKQISYIISR-----LPKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~-----l~~~~q~i~~SAt~~ 118 (230)
|+||||++.+.. +...+...+.. .+...+++++|||..
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 999999998654 44433333332 245789999999986
No 43
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=2.2e-21 Score=166.39 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.+. ++.++..+.|+....+..... .+++|+|+||+.+...+.. +.+.+.+++++|
T Consensus 55 ~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vI 130 (494)
T 1wp9_A 55 VLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLIV 130 (494)
T ss_dssp EEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhc-CCcchhhceEEE
Confidence 799999999999999999998632 356888888887765543333 4689999999999999887 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
+||||++.+......+...+....+..+++++|||....
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSS
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCC
Confidence 999999986644444455555556788999999999743
No 44
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=3.8e-22 Score=174.69 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=88.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+ .+.+++++
T Consensus 58 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~v 134 (556)
T 4a2p_A 58 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 134 (556)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHH-HHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHh-hCCCCEEEECHHHHHHHHHh-CcccccccCCEE
Confidence 7999999999999999999998876 78999999988766665555 46699999999999999987 666 79999999
Q ss_pred EEeccccccccccHHH-HHHHHHh-C---CCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMGFQKQ-ISYIISR-L---PKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~~~~~-~~~i~~~-l---~~~~q~i~~SAt~~ 118 (230)
|+||||++.+++.... +..++.. + +...|++++|||.+
T Consensus 135 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 135 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp EEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred EEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 9999999988764332 2233322 2 34689999999984
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=2.6e-22 Score=179.54 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=152.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|+||+||++||.|+..++..+...+ +++++.+.||.+....... .+|||+||||++| .++++.+ +.+.+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r~~~---y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDERRVA---YNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 47999999999999999999999988 8999999999875443322 4699999999999 6777652 24567
Q ss_pred CcccEEEEecccccc-cc---------------ccHHHHHHHHHhCC---------CCCcEE-----------------E
Q 026925 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLP---------KLRRTG-----------------L 112 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~---------------~~~~~~~~i~~~l~---------~~~q~i-----------------~ 112 (230)
+.+.++||||||.|+ +. +|...+..|+..++ +.+|+. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 899999999999998 42 47889999999998 678888 8
Q ss_pred EeecCch---HHHHHH--HhccC-CC-------eEEEEeccCccccccc---------------chhccccCCCCccce-
Q 026925 113 FSATQTE---AVEELS--KAGLR-NP-------VRVEVRAESKSHHVSA---------------SSQQLASSKTPLGLH- 163 (230)
Q Consensus 113 ~SAt~~~---~~~~~~--~~~~~-~~-------~~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~~i~- 163 (230)
||||.++ ++...+ ..++. +. ..+.+. +...+.++. ......+..+...+.
T Consensus 310 fsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVD-e~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~ 388 (922)
T 1nkt_A 310 YEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVD-EFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITL 388 (922)
T ss_dssp TCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBC-SSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEe-cccCcccCCccccchhhHHHhccccccccccccccceeeh
Confidence 9999875 333322 22332 21 111111 110010100 000000000111111
Q ss_pred ----------------------------------------------EEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcC
Q 026925 164 ----------------------------------------------LEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFM 195 (230)
Q Consensus 164 ----------------------------------------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~ 195 (230)
..++.....+|...+...+.. ..++|+||||+
T Consensus 389 Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~ 468 (922)
T 1nkt_A 389 QNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTT 468 (922)
T ss_dssp HHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 113334556688888888764 25679999999
Q ss_pred chhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 196 TCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 196 t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
|++.++.|+..|.+. |++..++||+..++
T Consensus 469 Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 469 SVERSEYLSRQFTKR----RIPHNVLNAKYHEQ 497 (922)
T ss_dssp CHHHHHHHHHHHHHT----TCCCEEECSSCHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEecCChhHH
Confidence 999999999999998 99999999997544
No 46
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.87 E-value=7.1e-22 Score=178.31 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=128.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+++.++.+.. . ++++..++|+....+. . .++++|+|+||+++..++.. ....+++++++|
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--W--LKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--G--GGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--h--cCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 79999999999999999976654 3 7899888887655332 1 24789999999999999988 666689999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.+.+++..++.++..++ ..|++++|||+++ ...+.. |+..+. +.....+. +......... ...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~----~l~~~~~~~~--~~~ 220 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRPV----PLIEGVIYPE--RKK 220 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCSS----CEEEEEEEEC--SST
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCCC----CceEEEEecC--Ccc
Confidence 999999988888999999888886 8999999999985 355554 343221 11111100 0000000000 000
Q ss_pred ceEEEEEcC--------CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 162 LHLEYLECE--------PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 162 i~~~~~~~~--------~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
........+ ...+...+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHH
Confidence 000011111 1233444444443 5679999999999999999999875
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=2.8e-21 Score=168.98 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=93.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +.+ .+.++++
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 130 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHI-IEDNDIIILTPQILVNNLNN-GAIPSLSVFTL 130 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHH-HHHCSEEEECHHHHHHHHHT-SSSCCGGGCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHH-hcCCCEEEECHHHHHHHHhc-CcccccccCCE
Confidence 37999999999999999999998876 78999999998766555555 35799999999999999987 656 7899999
Q ss_pred EEEeccccccccc-cHHHHHHHHHhC-----CCCCcEEEEeecCch
Q 026925 80 LVLDEADRLLDMG-FQKQISYIISRL-----PKLRRTGLFSATQTE 119 (230)
Q Consensus 80 lVvDEad~l~~~~-~~~~~~~i~~~l-----~~~~q~i~~SAt~~~ 119 (230)
+|+||||++.+.+ +...+...+... ....|++++|||++.
T Consensus 131 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 131 MIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999998764 444444444332 245799999999853
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.87 E-value=2.3e-21 Score=171.30 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=126.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++|||+||.|+++.+.+.. +..+....|+.. ..++++|+|+||++| +.. +.+.+++++++
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~-~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRT--------ITTGAPVTYSTYGKF---LAD-GGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCE--------ECCCCSEEEEEHHHH---HHT-TSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEe--------ccCCCCEEEECcHHH---HhC-CCcccCcccEE
Confidence 48999999999999998776654 445566666654 257899999999996 455 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCc--EEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q--~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+|||| +++.+|...+..|++.++...| ++++|||+++.+. ...+....+... .
T Consensus 323 VlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~-----------------~ 378 (666)
T 3o8b_A 323 ICDECH-STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS-----------------N 378 (666)
T ss_dssp EETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB-----------------S
T ss_pred EEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec-----------------c
Confidence 999996 6788889999999999987777 6777999987311 112222111111 0
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.. . ..+.. ++....+++||||+|++.|++++..|++. |+++..+||+|++++
T Consensus 379 ~~~i~~----~--~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 379 TGEIPF----Y--GKAIP-----IEAIRGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV 434 (666)
T ss_dssp CSSEEE----T--TEEEC-----GGGSSSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG
T ss_pred cchhHH----H--Hhhhh-----hhhccCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH
Confidence 000100 0 00000 23346789999999999999999999988 999999999999865
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.86 E-value=9.4e-22 Score=189.69 Aligned_cols=186 Identities=13% Similarity=0.156 Sum_probs=131.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~l~~ 79 (230)
+|+++|+|+||+|+++.+++..... ++++..++|+.+...+. ..+++|+|+|||++..++++ .. -.++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~-~~~~~~l~~v~~ 210 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRK-GGERTYTQLVRL 210 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTS-STTHHHHTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcC-CccchhhcCcCE
Confidence 7999999999999999999888777 89999999987653321 35689999999998777765 32 23789999
Q ss_pred EEEeccccccccccHHHHHHHHH-------hCCCCCcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchh
Q 026925 80 LVLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~-------~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 151 (230)
+|+||+|.+-+ ..+..++.++. ..+...|++++|||+++ .+.++++.-.++. .+..-+.
T Consensus 211 vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~----------- 277 (1724)
T 4f92_B 211 IILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN----------- 277 (1724)
T ss_dssp EEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG-----------
T ss_pred EEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC-----------
Confidence 99999996654 45555554443 45678999999999986 4566554322221 1222122
Q ss_pred ccccCCCCccceEEEEEcCCCCcHH-------HHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPS-------QLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~-------~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|..+.+.++...+..... .+...+.. .+.+++||||+|++.|+.++..|.+.
T Consensus 278 ----~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~ 340 (1724)
T 4f92_B 278 ----SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDM 340 (1724)
T ss_dssp ----GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHH
T ss_pred ----CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHH
Confidence 345667777777766554321 12222222 35679999999999999999988654
No 50
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=5.8e-22 Score=178.53 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=140.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++|+++||.|+++.++.+.. . ++++..++|+....+. . .++++|+|+||+++..++.+ ....+++++++
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE--H--LGDCDIIVTTSEKADSLIRN-RASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS--C--STTCSEEEEEHHHHHHHHHT-TCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh--h--ccCCCEEEECHHHHHHHHHc-ChhHHhhcCEE
Confidence 379999999999999999976643 3 7899999988765332 1 24789999999999999987 66668999999
Q ss_pred EEeccccccccccHHHHHHHHHhC---CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l---~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
|+||+|.+.++++...+..++..+ ++..|++++|||+++ ...+.. |+..+. +....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~------------------ 201 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW------------------ 201 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC------------------
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC------------------
Confidence 999999999888888887776665 568999999999986 455555 444322 11111
Q ss_pred CCccceEEEE------EcCC-------CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhcc-----------
Q 026925 158 TPLGLHLEYL------ECEP-------DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVL----------- 213 (230)
Q Consensus 158 ~~~~i~~~~~------~~~~-------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~----------- 213 (230)
.+..+...+. ..+. ..+...+.+.+. .++++||||+++++|+.++..|.+....
T Consensus 202 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i 279 (702)
T 2p6r_A 202 RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAI 279 (702)
T ss_dssp CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHH
T ss_pred CCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 1111111111 0111 114455555554 4579999999999999999999864200
Q ss_pred ---------------CCceEEeccCCCCCCC
Q 026925 214 ---------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ---------------~g~~~~~lh~~~~~~e 229 (230)
.+..+.++||+|++++
T Consensus 280 ~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 310 (702)
T 2p6r_A 280 LEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 310 (702)
T ss_dssp HTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HhhccccccHHHHHHHhcCeEEecCCCCHHH
Confidence 0135788999998753
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=3.6e-21 Score=175.54 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=90.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++++... ++++..++|+.....+...+ ..+++|+|+||+++.+.+.. +.+ .+.++++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~ 374 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTL 374 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHH-HHTCSEEEECHHHHHHHHHS-SSCCCGGGCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHh-hCCCCEEEEchHHHHHHHHh-ccccccccCCE
Confidence 37999999999999999999998866 78999999998766665555 46899999999999999987 666 7899999
Q ss_pred EEEeccccccccc-cHHHHHHHHHhC----CCCCcEEEEeecCc
Q 026925 80 LVLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (230)
Q Consensus 80 lVvDEad~l~~~~-~~~~~~~i~~~l----~~~~q~i~~SAt~~ 118 (230)
+|+||||++.+.+ +...+..+.... ....|++++|||.+
T Consensus 375 iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 375 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 9999999998764 333333333321 45689999999984
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=5.1e-21 Score=179.57 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=140.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++....+ ++++..+.+.....+. ...+..+.++|+||||+.+ . +.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~--~~~~~~~l 726 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q--SDVKFKDL 726 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H--SCCCCSSE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h--CCcccccc
Confidence 47999999999999999999887666 6888888776554333 3345456799999999754 2 45678999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++ ......++..++...+++++|||..+....+....+.++..+...+.
T Consensus 727 ~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----------------- 784 (1151)
T 2eyq_A 727 GLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 784 (1151)
T ss_dssp EEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC-----------------
T ss_pred ceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC-----------------
Confidence 99999999995 33345566667778999999999988777777766665544322211
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....+..++.... +......+++. ..+++++||||++++|+.++..|.+. .+|.++..+||+|++++
T Consensus 785 ~r~~i~~~~~~~~---~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~--~p~~~v~~lhg~~~~~e 852 (1151)
T 2eyq_A 785 RRLAVKTFVREYD---SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERE 852 (1151)
T ss_dssp BCBCEEEEEEECC---HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSSCCHHH
T ss_pred CccccEEEEecCC---HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh--CCCCeEEEEeCCCCHHH
Confidence 1223444444332 22222233332 35679999999999999999999987 56889999999998653
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.85 E-value=1.7e-20 Score=180.97 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=129.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhh-hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-CcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFI-STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-~~~~~~~l~~ 79 (230)
+|+++|||+||+|+++.+++.. ... ++++..++|+...... . ..+++|+|+|||++..++++. ....++++++
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~~--~--~~~~~IiV~TPEkld~llr~~~~~~~l~~v~l 1049 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRL-NKKVVLLTGETSTDLK--L--LGKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTS-CCCEEECCSCHHHHHH--H--HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSE
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhc-CCEEEEEECCCCcchh--h--cCCCCEEEECHHHHHHHHhCcccccccceeeE
Confidence 7999999999999999987654 444 8899999998654322 2 256899999999998888651 2234789999
Q ss_pred EEEeccccccccccHHHHHHHH-------HhCCCCCcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchh
Q 026925 80 LVLDEADRLLDMGFQKQISYII-------SRLPKLRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~-------~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 151 (230)
+|+||+|.+.+. .+..++.++ ...+...|++++|||+++ ...++++.-.++. ...+..
T Consensus 1050 vViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~------------ 1115 (1724)
T 4f92_B 1050 FVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP------------ 1115 (1724)
T ss_dssp EEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG------------
T ss_pred EEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC------------
Confidence 999999977653 455444443 445678999999999986 4666665433332 222222
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHH-------HHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQ-------LVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~-------l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|..++.++...+..+.... +...+. ....+++||||+|++.|+.++..|...
T Consensus 1116 ----~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~ 1178 (1724)
T 4f92_B 1116 ----NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTT 1178 (1724)
T ss_dssp ----GGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred ----CCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHH
Confidence 3456666666666555443222 222232 446789999999999999998877543
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=2.9e-20 Score=171.90 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=89.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..++|+.+...+...+ ..+++|+|+||+++.+.+.. +.+ .+.+++++
T Consensus 299 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~~-~~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~li 375 (936)
T 4a2w_A 299 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 375 (936)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHHH-HHHCSEEEECHHHHHHHHHS-SSCCCGGGCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEECCcchhhHHHHh-ccCCCEEEecHHHHHHHHHc-CccccccCCCEE
Confidence 7999999999999999999998766 78999999988766555555 35689999999999999987 656 78999999
Q ss_pred EEeccccccccc-cHHHHHHHHHhC----CCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~l----~~~~q~i~~SAt~~ 118 (230)
|+||||++.+.+ +...+..+.... ....|++++|||.+
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999999998764 444443443331 45689999999984
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.82 E-value=2e-19 Score=162.41 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=128.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.++++.... ++++..++|+....+. ...+.++.++|+||||+.+.+ .+.+.++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l 491 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNL 491 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCC
Confidence 58999999999999999999998776 7899999998876543 334445679999999987633 3568899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++.. .. ...+.......+++++|||..+....+. ++.+......... ..
T Consensus 492 ~lVVIDEaHr~g~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~---------------p~ 549 (780)
T 1gm5_A 492 GLVIIDEQHRFGV---KQ--REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEM---------------PP 549 (780)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCC---------------CS
T ss_pred ceEEecccchhhH---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeecc---------------CC
Confidence 9999999999622 11 1122223356899999999877544433 3333221111111 00
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhh-hhccCCceEEeccCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPR-LAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~-~~~~~g~~~~~lh~~~~ 226 (230)
....+... ..+..+...+...+.. ..+++++|||++. ..|+.++..|.+ . .+|+++..+||+|+
T Consensus 550 ~r~~i~~~---~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~--~~~~~v~~lHG~m~ 624 (780)
T 1gm5_A 550 GRKEVQTM---LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV--FPEFKLGLMHGRLS 624 (780)
T ss_dssp SCCCCEEC---CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC--C---CBCCCCSSSC
T ss_pred CCcceEEE---EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh--cCCCcEEEEeCCCC
Confidence 11122221 1233444555555543 3567899999965 457889999987 3 24889999999999
Q ss_pred CCC
Q 026925 227 QVG 229 (230)
Q Consensus 227 ~~e 229 (230)
++|
T Consensus 625 ~~e 627 (780)
T 1gm5_A 625 QEE 627 (780)
T ss_dssp CSC
T ss_pred HHH
Confidence 876
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=169.18 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=84.1
Q ss_pred eEEEeCChhhHHHH-HHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-----CCcccCC
Q 026925 2 GMIISPTRELSSQI-YHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-----MDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~-~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-----~~~~~~~ 75 (230)
+|||+||++|+.|+ .+.+++++.. ++++..+.|+....+....+ .++++|+|+||+++...+.. ...+.+.
T Consensus 59 vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~ 135 (699)
T 4gl2_A 59 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGEDAGVQLS 135 (699)
T ss_dssp BCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHH-HHSCSEEEEEHHHHHHHTC--------CCCGG
T ss_pred EEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhh-hcCCCEEEECHHHHHHHHhccccccccceecc
Confidence 68999999999999 9999999754 47899999887665554555 47899999999999988832 1457789
Q ss_pred cccEEEEeccccccccc-cHHHHHHHHHhC-------------CCCCcEEEEeecCch
Q 026925 76 NLEILVLDEADRLLDMG-FQKQISYIISRL-------------PKLRRTGLFSATQTE 119 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~-~~~~~~~i~~~l-------------~~~~q~i~~SAt~~~ 119 (230)
+++++||||||++...+ +...+..++... .+..|++++|||.+.
T Consensus 136 ~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 136 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp GCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred cCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 99999999999986543 333333332221 156799999999986
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.78 E-value=6.9e-20 Score=159.26 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=131.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+.+.++++... ++.++..+.|+.+..++ + .++++|+|+||+.+. .. ....+++++++|
T Consensus 160 vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~---~-~~~~~I~i~T~~~l~---~~-~~~~~~~~~liI 230 (510)
T 2oca_A 160 ILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDK---Y-KNDAPVVVGTWQTVV---KQ-PKEWFSQFGMMM 230 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSS-CGGGEEECGGGCCTTGG---G-CTTCSEEEEEHHHHT---TS-CGGGGGGEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHhhcC-CccceEEEecCCccccc---c-ccCCcEEEEeHHHHh---hc-hhhhhhcCCEEE
Confidence 799999999999999999988543 36788888888765443 2 477999999999643 33 445678999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHH-HHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL-SKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||+|++.. ..+..+++.++...+++++|||.++..... ....+.++........... ..+ ...+.
T Consensus 231 iDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~l~~~ 297 (510)
T 2oca_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLM------EDG---QVTEL 297 (510)
T ss_dssp EETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC------------------CC
T ss_pred EECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHh------hCC---cCCCc
Confidence 999999865 456778888888889999999997653221 1111223332222111000 000 11111
Q ss_pred cceEEEEEcC---------------------CCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCc
Q 026925 161 GLHLEYLECE---------------------PDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL 216 (230)
Q Consensus 161 ~i~~~~~~~~---------------------~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~ 216 (230)
.+.......+ ...|...+.+++... ++++++|||+ .++|+.++..|.+. +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----~~ 372 (510)
T 2oca_A 298 KINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----YD 372 (510)
T ss_dssp EEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----CS
T ss_pred eEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----CC
Confidence 1121122111 123444555666543 5667777777 88999999999988 77
Q ss_pred eEEeccCCCCCC
Q 026925 217 SLIPLHGKMKQV 228 (230)
Q Consensus 217 ~~~~lh~~~~~~ 228 (230)
++..+||+|+++
T Consensus 373 ~v~~~~g~~~~~ 384 (510)
T 2oca_A 373 KVYYVSGEVDTE 384 (510)
T ss_dssp SEEEESSSTTHH
T ss_pred CeEEEECCCCHH
Confidence 999999999864
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.76 E-value=2e-17 Score=149.90 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=129.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+...+........+..++.-...... ...+.+|+++||+++.+.+.. . ..+.+++++|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I~v~T~G~l~r~l~~-~-~~l~~~~~lI 213 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTILKYMTDGMLLREAME-D-HDLSRYSCII 213 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSEEEEEHHHHHHHHHH-S-TTCTTEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCEEEECHHHHHHHHhh-C-ccccCCCEEE
Confidence 688999999999998876554321112222221111111 135689999999999987765 3 4589999999
Q ss_pred Eecccc-ccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADR-LLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~-l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
+||+|. .++.. ....+..+.... +..|++++|||++. ..+. .++.++..+.+... .
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr------------------~ 271 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR------------------T 271 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC------------------C
T ss_pred ecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHH-HHhcCCCcccccCc------------------c
Confidence 999995 55533 334455555444 57899999999964 3444 45555444443322 2
Q ss_pred ccceEEEEEcCCCCcHHH----HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh-------hccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQ----LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL-------AVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~----l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~-------~~~~g~~~~~lh~~~~~~ 228 (230)
..+.+++...+..++... +..+......+++||||+++++|+.++..|.+. ....++.+.++||+|+++
T Consensus 272 ~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 272 YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHH
T ss_pred cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHH
Confidence 235555555555554433 333444456789999999999999999999851 112488999999999864
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.73 E-value=1.7e-18 Score=147.88 Aligned_cols=164 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-------CCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-------~~~~~ 73 (230)
+++|++||++||.|+++.++.+ ++. . .++. . -.++||+++.+++.. .....
T Consensus 39 ~~lil~Ptr~La~Q~~~~l~~~-----~v~--~-~~~~-------------~-~~v~Tp~~l~~~l~~~~l~~~~~~~~~ 96 (440)
T 1yks_A 39 RTLVLAPTRVVLSEMKEAFHGL-----DVK--F-HTQA-------------F-SAHGSGREVIDAMCHATLTYRMLEPTR 96 (440)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CEE--E-ESSC-------------C-CCCCCSSCCEEEEEHHHHHHHHTSSSC
T ss_pred eEEEEcchHHHHHHHHHHHhcC-----CeE--E-eccc-------------c-eeccCCccceeeecccchhHhhhCccc
Confidence 4899999999999999887743 222 1 1110 0 037888776554433 01234
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (230)
+++++++|+||+|++ +.++...+..+.... +...|++++|||+++.+..+... ...+
T Consensus 97 ~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~----~~~~----------------- 154 (440)
T 1yks_A 97 VVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS----NGEI----------------- 154 (440)
T ss_dssp CCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC----SSCE-----------------
T ss_pred ccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc----CCCe-----------------
Confidence 799999999999998 444444444444333 36799999999998764322221 1100
Q ss_pred cccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 153 LASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
......++...+...+ ..+... ++++||||++++.|+.++..|.+. |+++..+||+
T Consensus 155 ----------~~~~~~~~~~~~~~~~-~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ 210 (440)
T 1yks_A 155 ----------EDVQTDIPSEPWNTGH-DWILAD-KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK 210 (440)
T ss_dssp ----------EEEECCCCSSCCSSSC-HHHHHC-CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS
T ss_pred ----------eEeeeccChHHHHHHH-HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch
Confidence 0001111222222222 223333 579999999999999999999988 9999999994
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.72 E-value=8.3e-18 Score=148.92 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=115.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++|||+||.|+++.++. ..+. ..++... .....+..+-+.|.+.+...+.. . ..+++++++
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~-------~~v~-~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~-~-~~l~~~~~i 281 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRG-------LPIR-YQTPAVK-----SDHTGREIVDLMCHATFTTRLLS-S-TRVPNYNLI 281 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEE-ECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHH-C-SSCCCCSEE
T ss_pred eEEEEcChHHHHHHHHHHhcC-------Ccee-Eecccce-----eccCCCceEEEEChHHHHHHHhc-c-ccccCCeEE
Confidence 479999999999999877762 2222 2111100 01112345667777777665554 2 458999999
Q ss_pred EEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++ +.++...+..+.+.++ ...|+++||||+++.+..+.. .++..+.+... .
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----------------~- 339 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----------------I- 339 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----------------C-
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-----------------C-
Confidence 99999998 7778888888888875 679999999999876443222 23333333222 0
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
+ .++...++..+... .+++||||+|++.|+.++..|.+. |+++..+||+
T Consensus 340 ----------~-~~~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~ 388 (618)
T 2whx_A 340 ----------P-ERSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK 388 (618)
T ss_dssp ----------C-SSCCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred ----------C-HHHHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH
Confidence 0 01111222333333 569999999999999999999988 9999999986
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.72 E-value=2.6e-17 Score=141.09 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=113.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++||.|+++.+. +..+....+.... . ...+..|.++||+.+...+.. . ..+++++++
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~-----~-~~~~~~i~~~t~~~l~~~l~~-~-~~l~~~~~i 114 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKS-----D-HTGREIVDLMCHATFTTRLLS-S-TRVPNYNLI 114 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSC-----C-CCSSCCEEEEEHHHHHHHHHH-C-SCCCCCSEE
T ss_pred cEEEECCCHHHHHHHHHHhc-------Cceeeeeeccccc-----c-CCCCceEEEEChHHHHHHhhC-c-ccccCCCEE
Confidence 47999999999999988774 2233222221111 0 124567999999998887765 2 568899999
Q ss_pred EEeccccccccccHHHHHHHHHh-CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISR-LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~-l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++ +..+...+..+... .+...|++++|||++..+.. .+..++..+..... .+
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-----------------~p 173 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-----------------IP 173 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-----------------CC
T ss_pred EEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecCcc-----------------CC
Confidence 99999977 44444433333322 34579999999999874332 23334444433211 11
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.. ....+...+... .+++||||+|+++|+.++..|.+. |+++..+||++.
T Consensus 174 ~~------------~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~ 223 (451)
T 2jlq_A 174 ER------------SWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF 223 (451)
T ss_dssp SS------------CCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH
T ss_pred ch------------hhHHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH
Confidence 00 000112233333 458999999999999999999988 999999999875
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.72 E-value=4.5e-18 Score=146.49 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=126.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++| +++ +..+.|+.. ..++|+|+||+.+...+.. ...++++
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~----~~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcC----------CcCCEEEEEcHHHHHHHHH----hcCCCCE
Confidence 3799999999999999998884 567 777777653 3578999999998776643 1246899
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch-------------------HHHHHHHhccCCCeEEEEecc
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-------------------AVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~-------------------~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+|+||+|++.+.+|.. +.+.+ ...+++++|||... ....+...++..+....+...
T Consensus 196 iIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 270 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVP 270 (472)
T ss_dssp EEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEEC
T ss_pred EEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcC
Confidence 9999999999887765 45555 46789999999862 244444444444433222111
Q ss_pred Cccc--ccccch-hcccc--------CCCCccceEE---------------------EEEcCCCCcHHHHHHHHHhCCCC
Q 026925 141 SKSH--HVSASS-QQLAS--------SKTPLGLHLE---------------------YLECEPDEKPSQLVDLLIKNKSK 188 (230)
Q Consensus 141 ~~~~--~~~~~~-~~~~~--------~~~~~~i~~~---------------------~~~~~~~~k~~~l~~ll~~~~~~ 188 (230)
.... ...... ..+.+ ......+.+. .+.+....|...+.++++...++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 350 (472)
T 2fwr_A 271 LAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD 350 (472)
T ss_dssp CCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Confidence 0000 000000 00000 0000011000 01123456778889999888889
Q ss_pred eEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 189 KIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 189 ~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++||||++++.++.++..|. +..+||+++++
T Consensus 351 k~lvF~~~~~~~~~l~~~l~---------~~~~~g~~~~~ 381 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVFL---------IPAITHRTSRE 381 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHTT---------CCBCCSSSCSH
T ss_pred cEEEEECCHHHHHHHHHHhC---------cceeeCCCCHH
Confidence 99999999999999998874 34689998764
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.70 E-value=2.3e-16 Score=134.47 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||++||.|+++.+. ++.+....++... ....+..+.+.|.+.+...+.. ...+++++++
T Consensus 33 ~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~v 97 (431)
T 2v6i_A 33 RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLY 97 (431)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEE
T ss_pred CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------cCCCCceEEEEchHHHHHHHhc--CccccCCCEE
Confidence 47999999999999887665 3344444443211 1123455677788887665544 3458899999
Q ss_pred EEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||+|++ +..+......+.... +...|++++|||+++.+..+... ++.......
T Consensus 98 ViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~---~~~i~~~~~-------------------- 153 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS---NSPIIDEET-------------------- 153 (431)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC---SSCCEEEEC--------------------
T ss_pred EEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC---CCceeeccc--------------------
Confidence 99999997 443444444444432 56899999999998742211100 000011000
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
.. +..+...+...+... .+++||||+++++|+.++..|.+. |+++..+||++
T Consensus 154 --------~~-~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~ 205 (431)
T 2v6i_A 154 --------RI-PDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT 205 (431)
T ss_dssp --------CC-CSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT
T ss_pred --------cC-CHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc
Confidence 01 112222233445444 468999999999999999999988 99999999974
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.68 E-value=7.5e-17 Score=142.55 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=97.8
Q ss_pred eEEEeCChhhHHHHH-HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC---CcccCCcc
Q 026925 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~-~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~---~~~~~~~l 77 (230)
+|||+||++|+.|+. +.++.+. ..+..+.++. ...+.+|+|+||+++....... ..+...++
T Consensus 238 vlil~P~~~L~~Q~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 238 ILFLADRNVLVDDPKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp EEEEEC-----------CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 799999999999998 7776653 2333333321 1467899999999998876421 33556789
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeE------------------EEEec
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR------------------VEVRA 139 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~------------------i~~~~ 139 (230)
+++|+||||++...+ ...+..+++.++ ..+++++|||.......-...++..+.. +.+..
T Consensus 304 ~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 381 (590)
T 3h1t_A 304 DLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS 381 (590)
T ss_dssp SEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEE
T ss_pred CEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeee
Confidence 999999999987643 245566777776 4789999999764333323333333322 11111
Q ss_pred cCcccccccchhccccCCCCccceEEEEEcCC-------CCcHHH----HHHHHHh-CCCCeEEEEcCchhHHHHHHHHh
Q 026925 140 ESKSHHVSASSQQLASSKTPLGLHLEYLECEP-------DEKPSQ----LVDLLIK-NKSKKIIIYFMTCACVDYWGVVL 207 (230)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~k~~~----l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L 207 (230)
.............. ......+....+.... ..+... +...++. ...+++||||+++++|+.++..|
T Consensus 382 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L 459 (590)
T 3h1t_A 382 EVDAAGWRPSKGDV--DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRAL 459 (590)
T ss_dssp TTCC-------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHH
T ss_pred eeeccccccccccc--cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHH
Confidence 10000000000000 0000000000111110 011222 3333333 35579999999999999999999
Q ss_pred hhhhc----cCCceEEeccCCCCC
Q 026925 208 PRLAV----LKSLSLIPLHGKMKQ 227 (230)
Q Consensus 208 ~~~~~----~~g~~~~~lh~~~~~ 227 (230)
.+... ..+-.+..+||++++
T Consensus 460 ~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 460 NNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp HHHTHHHHTTCTTSEEECSSTTHH
T ss_pred HHhhhhhhccCCCeEEEEeCCChH
Confidence 87610 012237789998864
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.67 E-value=1.6e-17 Score=148.08 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------Cccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~ 73 (230)
+++|++||++||.|+++.+..+ ++. ...+. + . .++||+++.+++... ....
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i~--~~~~~---------l-~-----~v~tp~~ll~~l~~~~l~~~l~~~~~ 329 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PVR--YLTPA---------V-Q-----REHSGNEIVDVMCHATLTHRLMSPLR 329 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CCE--ECCC------------------CCCCSCCCEEEEEHHHHHHHHHSSSC
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Cee--eeccc---------c-c-----ccCCHHHHHHHHHhhhhHHHHhcccc
Confidence 4899999999999999887754 222 10010 0 0 145555543322220 1246
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (230)
+++++++|+||||++ +..+...+..+...++ ...|+++||||+++.+..+... +.....+.
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~-------------- 391 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVS-------------- 391 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEE--------------
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEe--------------
Confidence 899999999999998 3333334444444443 6789999999998653322110 00011110
Q ss_pred cccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 153 LASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+...+...+ ..+.. ..+++||||+++++|+.++..|.+. |+++..+||+
T Consensus 392 --------------~~~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~ 443 (673)
T 2wv9_A 392 --------------SEIPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK 443 (673)
T ss_dssp --------------CCCCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS
T ss_pred --------------eecCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH
Confidence 011111111222 23333 4679999999999999999999988 9999999995
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.66 E-value=6.4e-16 Score=137.67 Aligned_cols=175 Identities=16% Similarity=0.050 Sum_probs=120.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|||+||.|+++.+.++ ++++..++|+...... -.....+++++|++.+. ....++++|
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~---------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS---------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC---------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh---------hcccCCEEE
Confidence 589999999999999998875 5688888887654100 00113678888886532 246779999
Q ss_pred EeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++.+.+++..+..++..++ ...|++++|||.+ .+..+.... ..+..+..... ..+
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r----------------~~~- 305 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR----------------LTP- 305 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC----------------SSC-
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeee----------------cch-
Confidence 999999999999999999999888 6889999999953 344444433 33333321111 011
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.. +....- ..+.... +..+|||+|+++|+.++..|.+. |+.+.++||+|+++
T Consensus 306 -l~---~~~~~l-------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~ 357 (677)
T 3rc3_A 306 -IS---VLDHAL-------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPG 357 (677)
T ss_dssp -EE---ECSSCC-------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred -HH---HHHHHH-------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHH
Confidence 00 000000 1112222 34589999999999999999987 99999999999875
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.64 E-value=3.5e-16 Score=134.31 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=102.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+.. ..+....+..... ...+..+.+.|.+.+...+.. ...+++++++
T Consensus 52 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~i 116 (459)
T 2z83_A 52 RTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLF 116 (459)
T ss_dssp CEEEEECSHHHHHHHHHHTTT-------SCEEECC--------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEE
T ss_pred cEEEECchHHHHHHHHHHhcC-------ceEeEEecccccC------CCCCcEEEEEchHHHHHHhhc--cccccCCcEE
Confidence 379999999999999888762 2222211111100 023345777888877665553 3568899999
Q ss_pred EEeccccc-----cccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 81 VLDEADRL-----LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 81 VvDEad~l-----~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
|+||||.+ +..++..... .+...|++++|||++..+..+... ..|... +...
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~~--------------- 173 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQDE--------------- 173 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECC---------------
T ss_pred EEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhccC--CCCeEE-eccc---------------
Confidence 99999983 3344333221 236889999999998753222111 122211 1000
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
.+ ..+...+..++... .+++||||+|++.|+.++..|.+. |+++..+||+
T Consensus 174 -------------~~-~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~ 223 (459)
T 2z83_A 174 -------------IP-DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRK 223 (459)
T ss_dssp -------------CC-SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred -------------CC-cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHH
Confidence 00 11111122334333 579999999999999999999988 9999999996
No 68
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=119.50 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=75.9
Q ss_pred eEEEeCChhhHHH-HHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC-----cccCC
Q 026925 2 GMIISPTRELSSQ-IYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q-~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~-----~~~~~ 75 (230)
+||++||++|+.| +.+.++.+... ++++..+.|+.........+ ..+++|+|+||+++...+.... .+.+.
T Consensus 85 ~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 85 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp EEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHH-HHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred EEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhh-ccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 7999999999999 88889988755 57888888876544444444 2468999999999999887622 15678
Q ss_pred cccEEEEeccccccccccHHHH-HHHHHhC-------------CCCCcEEEEeec
Q 026925 76 NLEILVLDEADRLLDMGFQKQI-SYIISRL-------------PKLRRTGLFSAT 116 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~-~~i~~~l-------------~~~~q~i~~SAt 116 (230)
+++++|+||||++.+.++...+ ..++... .+..+++++|||
T Consensus 162 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 162 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 9999999999999876654443 3332221 156899999998
No 69
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=115.22 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=85.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++++|+++|+.|+.+.+........+..++.-...... ....+++|+|+||+++.+++.. .+++++++|
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lV 181 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVI 181 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEE
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEE
Confidence 688999999999998888766543224444432222111 0025588999999999999876 389999999
Q ss_pred Eeccccc-cccccH-HHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCe
Q 026925 82 LDEADRL-LDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (230)
Q Consensus 82 vDEad~l-~~~~~~-~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~ 133 (230)
+||||.+ ++.++. ..++.+.... ++.|++++|||++.+. +.+.+...|.
T Consensus 182 lDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 182 VDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred EECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 9999986 677766 5667777666 4789999999999865 5554444443
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.55 E-value=1.7e-14 Score=133.87 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...|...+.++++...+.++||||+++..++.++..|.+.. |+++..+||+|++++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~---g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE---GIRAAVFHEGMSIIE 542 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT---CCCEEEECTTSCTTH
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc---CCcEEEEeCCCCHHH
Confidence 34578999999998888999999999999999999999543 999999999999864
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.54 E-value=9.9e-15 Score=135.23 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=79.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc-ccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~-~~~~~l~~l 80 (230)
+|||+|+++|+.|+.+.+..+.... +.++.+.......+...+++|+|+||+++..++..... ..+++..++
T Consensus 333 vLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 333 VFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp EEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 7999999999999999999886431 12344444444555346799999999999998875221 245678899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
|+||||++.. ......|.+.+| +.++++||||...
T Consensus 406 IiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 406 IFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred EEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccc
Confidence 9999999754 334556777776 4799999999864
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.54 E-value=2.6e-13 Score=121.84 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC-----cccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~-----~~~~ 74 (230)
+|+|++||++||.|.+.++..+...+ ++++..+.||.+...... ..++||+||||++| .++++.+- .+.+
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~r~~---ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAERRK---AYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHHHHH---HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHH---HcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 47999999999999999999999988 899999999987543332 24699999999999 78887621 2457
Q ss_pred C---cccEEEEecccccc
Q 026925 75 R---NLEILVLDEADRLL 89 (230)
Q Consensus 75 ~---~l~~lVvDEad~l~ 89 (230)
+ ++.++|+||+|.|+
T Consensus 198 r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CSSSSSCEEEETTHHHHT
T ss_pred ccCCCcceEEEechHHHH
Confidence 7 89999999999997
No 73
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.50 E-value=1.2e-14 Score=116.98 Aligned_cols=106 Identities=22% Similarity=0.182 Sum_probs=82.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.... +..+..+.++..... .. ..+++|+|+||+++.. . ....+.+++++|
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~I~v~T~~~l~~---~-~~~~~~~~~~vI 230 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDD---KY-KNDAPVVVGTWQTVVK---Q-PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTT---CC-CTTCSEEEECHHHHTT---S-CGGGGGGEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCCCcchh---hh-ccCCcEEEEchHHHHh---h-HHHHHhhCCEEE
Confidence 7999999999999999999986443 567777777765432 11 2568999999987533 2 334578899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
+||||++.+ +.+..+++.+....+++++|||+++.
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTT
T ss_pred EECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCc
Confidence 999999864 46677888887889999999999765
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.50 E-value=3.6e-14 Score=122.92 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=70.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||||+ .|+.|+.++++++. |+.++..+.|+... ....+++|+|+||+++..... +...+++++|
T Consensus 89 ~LIv~P~-~l~~qw~~e~~~~~---~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vI 154 (500)
T 1z63_A 89 SLVICPL-SVLKNWEEELSKFA---PHLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 154 (500)
T ss_dssp EEEEECS-TTHHHHHHHHHHHC---TTSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred EEEEccH-HHHHHHHHHHHHHC---CCceEEEEecCchh------ccccCCcEEEeeHHHHhccch----hcCCCcCEEE
Confidence 6999994 58899999999885 35677666665422 113568999999998755332 3345678999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++.+.+. .....+..++ ..+.+++|||..
T Consensus 155 vDEaH~~kn~~~--~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 155 IDEAQNIKNPQT--KIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EETGGGGSCTTS--HHHHHHHTSC-EEEEEEECSSCS
T ss_pred EeCccccCCHhH--HHHHHHHhhc-cCcEEEEecCCC
Confidence 999999976542 2334455554 456799999973
No 75
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.43 E-value=1.3e-12 Score=115.44 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=71.7
Q ss_pred cEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--C
Q 026925 109 RTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--K 186 (230)
Q Consensus 109 q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 186 (230)
.+.++|+|......++.+.|-.+ .+.++... -....-.+..+.....+|...+...+... .
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk---------------p~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~ 473 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIPTHK---------------PMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKK 473 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECCCSS---------------CCCCEECCCEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEECCCC---------------CcceeecCcEEEecHHHHHHHHHHHHHHHhhC
Confidence 57899999998888887777433 33333321 01111122345556778999999888753 5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
++|+||||+|++.++.++..|.+. |++..++||+..+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~----Gi~~~vLhgkq~~ 510 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKK----GIPHQVLNAKYHE 510 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT----TCCCEEECSCHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCchH
Confidence 789999999999999999999988 9999999998544
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.8e-12 Score=117.06 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=73.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----------HhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----------EEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l-----------~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+||||| ..|+.|+.+.+.+++ |++++....|+.......... ...+++|+|+|++.+......
T Consensus 289 ~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 289 HIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp EEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred EEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 589999 778889899988875 467888777776554443332 124689999999998764432
Q ss_pred cccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 71 VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+...+++++|+||||++-+.. ......+..++ ....+++|||.
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSE-EEEEEEECSCC
T ss_pred -HhcCCcceeehhhhhhhcCch--hHHHHHHHHhh-hccEEEeeCCc
Confidence 333467899999999986433 22333455553 44568889996
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.36 E-value=1.4e-11 Score=109.87 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH--HHHHHHhc-----CCcEEEEcChHHHHHHhhCCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA--DVKKIEEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~--~~~~l~~~-----~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
+|||+|+ .|+.|+.+++.++... .+.+..+.++..... ........ .++|+|+|++.+.... ..+..
T Consensus 117 ~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~ 190 (644)
T 1z3i_X 117 VIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHK 190 (644)
T ss_dssp EEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTT
T ss_pred EEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhc
Confidence 6899996 7889999999999755 456667776654322 22222211 4789999999886544 33455
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
.+++++|+||||++-+.. .. ....+..++ ....+++|||.
T Consensus 191 ~~~~~vI~DEaH~ikn~~-~~-~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD-NQ-TYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp SCCCEEEETTGGGCCTTC-HH-HHHHHHHHC-CSEEEEECSSC
T ss_pred CCccEEEEECceecCChh-hH-HHHHHHhcc-cCcEEEEecCc
Confidence 678899999999986543 12 222333443 44678899995
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.25 E-value=2.9e-11 Score=94.81 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=72.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|++||++|+.|+.+.+.++ +++ +..+.|+.. ...+|+|+||+.+...... ...+++++
T Consensus 136 ~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~i~v~T~~~l~~~~~~----~~~~~~ll 196 (237)
T 2fz4_A 136 TLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFMLL 196 (237)
T ss_dssp EEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC----------CcCCEEEEeHHHHHhhHHH----hcccCCEE
Confidence 789999999999999988884 566 777777653 3578999999998765543 12568999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
|+||+|++.+..+.. +...++ ..+++++|||...
T Consensus 197 IiDEaH~l~~~~~~~----i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 197 IFDEVHHLPAESYVQ----IAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp EEECSSCCCTTTHHH----HHHTCC-CSEEEEEEESCC-
T ss_pred EEECCccCCChHHHH----HHHhcc-CCEEEEEecCCCC
Confidence 999999998776543 555554 6788999999874
No 79
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.02 E-value=7e-10 Score=99.07 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc--ccHHH----HHHHHHh------------------CCCCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--GFQKQ----ISYIISR------------------LPKLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~--~~~~~----~~~i~~~------------------l~~~~q~i~ 112 (230)
+||++|.+++.. + .++|+||+|++++. ++... ...+... .+...|+++
T Consensus 320 ~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 899999888754 2 28999999998642 11111 1111111 123678999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~ 190 (230)
||||.++...... .........+. ...... +...+...+...+...+.. ..+.++
T Consensus 392 ~SAT~~~~~~~~~----~~~~~~~~r~~---------------~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~v 448 (661)
T 2d7d_A 392 VSATPGPYEIEHT----DEMVEQIIRPT---------------GLLDPL----IDVRPIEGQIDDLIGEIQARIERNERV 448 (661)
T ss_dssp ECSSCCHHHHHHC----SSCEEECCCTT---------------CCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEE
T ss_pred EecCCChhHHHhh----hCeeeeeeccc---------------CCCCCe----EEEecccchHHHHHHHHHHHHhcCCeE
Confidence 9999986542221 11111111111 000111 1112333455555555543 256799
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
||||+|+..|+.++..|.+. |+++..+||++++.
T Consensus 449 lVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 482 (661)
T 2d7d_A 449 LVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTL 482 (661)
T ss_dssp EEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHH
T ss_pred EEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHH
Confidence 99999999999999999998 99999999998754
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.01 E-value=2.8e-10 Score=86.23 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=59.6
Q ss_pred HhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 026925 126 KAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGV 205 (230)
Q Consensus 126 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~ 205 (230)
..|+.+|..+.+... .....++.|.++.+++.+|...+.+++...+ +++||||++++.|+.++.
T Consensus 9 ~~~~~~p~~i~v~~~---------------~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~ 72 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM---------------GAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHE 72 (191)
T ss_dssp ----------------------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHH
T ss_pred ccccCCCEEEEECCC---------------CCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHH
Confidence 457888988887766 4577899999999999999999999998754 589999999999999999
Q ss_pred HhhhhhccCCceEEeccCCCCCCC
Q 026925 206 VLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 206 ~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.|... |+++..+||+|++++
T Consensus 73 ~L~~~----g~~~~~lhg~~~~~~ 92 (191)
T 2p6n_A 73 YLLLK----GVEAVAIHGGKDQEE 92 (191)
T ss_dssp HHHHH----TCCEEEECTTSCHHH
T ss_pred HHHHc----CCcEEEEeCCCCHHH
Confidence 99988 999999999998753
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.95 E-value=1.6e-09 Score=96.88 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=82.0
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc-c--cHHHH---HHHHHh------------------CCCCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-G--FQKQI---SYIISR------------------LPKLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~--~~~~~---~~i~~~------------------l~~~~q~i~ 112 (230)
+||++|.+++.. -.++|+||+|++.+. + +.... ..+... .+...|+++
T Consensus 314 ~tp~~LlDyl~~--------~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE--------DFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT--------TCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh--------ccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 678887777644 238999999998742 1 11111 111111 113578999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--CCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--KSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~ 190 (230)
+|||.++...... ...+...... ...... .+...+...+...+...+... .+.++
T Consensus 386 ~SAT~~~~~~~~~------~~~~~~~~r~--------------~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~v 442 (664)
T 1c4o_A 386 VSATPGPFELAHS------GRVVEQIIRP--------------TGLLDP---LVRVKPTENQILDLMEGIRERAARGERT 442 (664)
T ss_dssp EESSCCHHHHHHC------SEEEEECSCT--------------TCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEE
T ss_pred EecCCCHHHHHhh------hCeeeeeecc--------------CCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEE
Confidence 9999986532220 1111111110 000000 011223344555555555432 56799
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
||||+|+..|+.++..|.+. |+++..+||++++.
T Consensus 443 lVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 476 (664)
T 1c4o_A 443 LVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAF 476 (664)
T ss_dssp EEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHH
T ss_pred EEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHH
Confidence 99999999999999999998 99999999998754
No 82
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.95 E-value=7.1e-10 Score=81.77 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.|+++.++..+|...+.++++....+++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 4 ~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQED 73 (163)
T ss_dssp --CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred ccCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH
Confidence 4567789999999999999999999999888889999999999999999999988 999999999998653
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.94 E-value=9.6e-10 Score=81.85 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=61.2
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.++.|+++.+++.+|...+.++++....+++||||+++..|+.++..|... |+++..+||+|++++
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEE 69 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHH
Confidence 35788999999999999999999999988899999999999999999999988 999999999998653
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=81.10 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCccceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 157 KTPLGLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 157 ~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++.++.|+++.++..+ |...+..+++....+++||||+++..|+.++..|.+. |+++..+||+|+++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~ 71 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVE 71 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHH
Confidence 46789999999998766 9999999999888889999999999999999999988 99999999999875
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.85 E-value=5.5e-09 Score=78.65 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.|.++.++..+|...+.++++.. ..+++||||+++..|+.++..|... |+++..+||+|++++
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRD 84 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC-------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHH
Confidence 356789999999999999999999999987 5689999999999999999999988 999999999999865
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.83 E-value=3.4e-09 Score=78.21 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=58.8
Q ss_pred ccceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++.|+++.++..+ |...+.++++..+.+++||||++++.|+.++..|... |+++..+||+|+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 67 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQ 67 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHH
Confidence 46788999998877 9999999999988899999999999999999999988 99999999999865
No 87
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.61 E-value=5.4e-08 Score=78.71 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+++.++..+|...+.++++....+++||||+++++++.++..|... |+.+..+||+|++++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGE 66 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHH
Confidence 35788999999999999999999888899999999999999999999988 999999999999854
No 88
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.60 E-value=4.8e-08 Score=75.05 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=59.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+..+.++..+|...+.++++...++++||||+++++++.++..|... |+++..+||+|++++
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGE 69 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHH
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 345677888899999999999999888899999999999999999999998 999999999998753
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.02 E-value=5.2e-09 Score=77.65 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=60.0
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+++.|.++.++. .+|...+.++++....+++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~ 68 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGK 68 (170)
Confidence 467888888888 889999999998888889999999999999999999988 999999999998765
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.57 E-value=7.8e-08 Score=84.23 Aligned_cols=87 Identities=21% Similarity=0.130 Sum_probs=63.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---------------------------------HHHHHH--
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---------------------------------KADVKK-- 46 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---------------------------------~~~~~~-- 46 (230)
++|++||++|+.|+.+.+..+.... ++++..+.|.... ......
T Consensus 50 v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 50 VLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 7999999999999999999987665 6888877663221 111111
Q ss_pred ---------------HHhcCCcEEEEcChHHHHHHhhCCccc-CCcccEEEEeccccccc
Q 026925 47 ---------------IEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEILVLDEADRLLD 90 (230)
Q Consensus 47 ---------------l~~~~~~Iiv~TP~~l~~~l~~~~~~~-~~~l~~lVvDEad~l~~ 90 (230)
-....+||+|+||..+.+.... ..+. ..+..++|+||||++.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 1125789999999999887544 3233 24678999999999987
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.03 E-value=3.8e-06 Score=73.33 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch--------H-H-----------------------HHHHH--
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV--------K-A-----------------------DVKKI-- 47 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~--------~-~-----------------------~~~~l-- 47 (230)
++|++||++|+.|+.+.+..+ ++++..+.|.... . + ....+
T Consensus 54 ~~~~~~t~~l~~q~~~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~ 128 (540)
T 2vl7_A 54 VLIFTRTHSQLDSIYKNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKD 128 (540)
T ss_dssp EEEEESCHHHHHHHHHHHGGG-----TCCEEEC-----------------------------------------------
T ss_pred EEEEcCCHHHHHHHHHHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhh
Confidence 789999999999999888775 3444444432210 0 0 00000
Q ss_pred ------------HhcCCcEEEEcChHHHHHHhhCCcc-------cCCcccEEEEeccccccc
Q 026925 48 ------------EEEGANLLIGTPGRLYDIMERMDVL-------DFRNLEILVLDEADRLLD 90 (230)
Q Consensus 48 ------------~~~~~~Iiv~TP~~l~~~l~~~~~~-------~~~~l~~lVvDEad~l~~ 90 (230)
....+||+|+|+..+.+.... +.+ .+.+...+|+||||++.+
T Consensus 129 ~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 129 AVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp ----------CTTGGGCSEEEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHHH
Confidence 024579999999998774433 221 246778999999999943
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.26 E-value=0.00014 Score=57.83 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=49.3
Q ss_pred cCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 169 CEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 169 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.....|...+.+++... .+.++||||++...++.+...|.... |+++..+||+++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~ 150 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKK 150 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHH
Confidence 34567999999999865 67899999999999999999998743 89999999999864
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.61 E-value=0.0027 Score=56.10 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCc-EEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGAN-LLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~-Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++++||.++|.++...+....... ++..... .+.+. + ....+ ++-.+|+.. .+.. ......+++++
T Consensus 199 vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~-~~~~~--~-----~~Tih~ll~~~~~~~--~~~~-~~~~~l~~d~l 266 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLGKALRQL-PLTDEQK-KRIPE--D-----ASTLHRLLGAQPGSQ--RLRH-HAGNPLHLDVL 266 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-CSCSC--C-----CBTTTSCC--------------CTTSCCSCSEE
T ss_pred EEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-hccch--h-----hhhhHhhhccCCCch--HHHh-ccCCCCCCCEE
Confidence 6789999999999988887766554 3221100 00000 0 01111 222233321 1122 22223478999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
|||||+ |++ .+.+..+++.++...|++++.-.
T Consensus 267 IIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 267 VVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp EECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred EEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 999999 554 45677889999988999988644
No 94
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.04 E-value=0.24 Score=36.68 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=52.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~v~ 124 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPAIQ 124 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCcccCC
Confidence 799999999999988888765 578888999876654443 34457899999993 333 467888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 95
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.03 E-value=0.15 Score=36.54 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+.++...+... ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 38 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~~~ 105 (163)
T 2hjv_A 38 CIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIENIS 105 (163)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhcCC
Confidence 799999999999988888775 678888999876554443 33456789999994 222 567888899
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988643
No 96
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.21 E-value=0.35 Score=34.62 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~~~ 100 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQVS 100 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCSCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcccCC
Confidence 799999999999988888764 568888998877554443 33456789999994 222 567888888
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
No 97
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.14 E-value=0.29 Score=36.83 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=52.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|++-+..+...+... ++.+..++|+.+..++... +.++..+|+|+|.- +. ..+++.+++
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gidi~~v~ 101 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA--RGLDIPQVD 101 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT--CSSSCCCBS
T ss_pred EEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh--cCCCCccCc
Confidence 799999999999988888765 5788889998776655443 34567899999952 32 568888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
No 98
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.46 E-value=0.37 Score=35.38 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=44.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-+..+...++.. ++.+..++|+.+..+. ...+.+++.+|+|+|. .+. ..+++.+++
T Consensus 49 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~~~ 116 (185)
T 2jgn_A 49 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 116 (185)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCCSBS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh--cCCCcccCC
Confidence 799999999999988888764 5778888887654433 3344457889999995 222 456778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 99
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.29 E-value=0.48 Score=34.23 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=53.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~~~ 101 (172)
T 1t5i_A 34 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERVN 101 (172)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGGCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhhCC
Confidence 799999999999988888765 578888898877654443 334577899999963 22 567888899
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
No 100
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.93 E-value=0.37 Score=34.89 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+...+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++..++
T Consensus 37 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~--~Gid~~~~~ 104 (175)
T 2rb4_A 37 AIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA--RGIDVKQVT 104 (175)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC--TTTCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh--cCCCcccCC
Confidence 699999999999988888764 678888999877655443 334567899999953 22 567888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 101
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.24 E-value=3.2 Score=36.93 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=58.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+...+... ++++..++|+.+..+.... +..+..+|+|||-- +. .++++.+++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~--~GlDip~v~ 515 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LR--EGLDIPEVS 515 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----CS--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----hh--CCcccCCCC
Confidence 789999999999888888765 6778888888766555444 44577999999862 22 678899999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999865
No 102
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.98 E-value=3.8 Score=33.08 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=56.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-|..+++.++.. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~~~ 313 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIPTVS 313 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888765 567888888877554443 33456789999996 232 578899999
Q ss_pred EEEEecccc
Q 026925 79 ILVLDEADR 87 (230)
Q Consensus 79 ~lVvDEad~ 87 (230)
++|.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998766554
No 103
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.96 E-value=0.83 Score=38.25 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=53.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+.+.+.+. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 689999999999988888764 678888999877654444 33456789999997 222 578899999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 104
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.95 E-value=0.83 Score=39.47 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=57.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..++..+++.... ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~v~ 412 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 412 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcccCC
Confidence 689999999999999999887543 678888999877654443 34457899999996 332 568889999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-..
T Consensus 413 ~VI~~~~ 419 (563)
T 3i5x_A 413 EVLQIGV 419 (563)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9886543
No 105
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.64 E-value=0.91 Score=37.33 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+++.+.+. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip~v~ 346 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 346 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888764 678888999877654443 33457889999995 333 568888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 106
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.63 E-value=0.78 Score=36.59 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=52.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|++-+..+...+... ++.+..++|+.+..++.. .+.++..+|+|+|.- +. ..+++.+++
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~--~Gidi~~v~ 98 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA--RGLDIPQVD 98 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT--CSTTCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh--cCcccccee
Confidence 799999999998888777654 678889999877655444 334577999999952 22 567888888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 107
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.60 E-value=1.1 Score=39.14 Aligned_cols=76 Identities=14% Similarity=0.276 Sum_probs=58.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..++..+++.... ++.+..++|+.+..+... .+.++..+|||+|. .+. ..+++.+++
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip~v~ 361 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 361 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcccCC
Confidence 689999999999999999887543 678888999877654433 44457899999996 232 568889999
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 98865543
No 108
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=90.94 E-value=0.22 Score=32.55 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~----G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN----GVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----TCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC----CCCEEEecccHH
Confidence 4579999999999999999999988 999999988864
No 109
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=90.91 E-value=0.25 Score=31.81 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=32.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 188 KKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 188 ~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+++++||.+-..+...+..|... |+++..+.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~----G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE----GYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH----TCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHc----CCcEEEEcccHHH
Confidence 78999999999999999999998 9998889998753
No 110
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.81 E-value=4.3 Score=36.12 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=58.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+...+... ++++..++|+.+..+.... +..+..+|+|+|-- +. ..+++.+++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~--~GlDip~v~ 509 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LR--EGLDIPEVS 509 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CC--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hh--cCccCCCCC
Confidence 789999999999888888765 5778888888766555444 44567999999852 22 578889999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888864
No 111
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=90.80 E-value=0.21 Score=32.82 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~----G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN----GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT----TCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC----CCCeEEeCCCHH
Confidence 4579999999999999999999988 999999988764
No 112
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=90.74 E-value=0.2 Score=33.36 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 177 QLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+...+... +.+++++||.+-.++...+..|.+. |+++..+.||+.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~----G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQL----GLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTT----TCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHc----CCCEEEEcCcHH
Confidence 334444443 5579999999999999999999988 999999998864
No 113
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.44 E-value=1.4 Score=35.37 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=52.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+.++++.+++. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 308 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS--RGIDVNDLN 308 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH--HHCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888775 567888888876554433 34456789999995 222 346778888
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887533
No 114
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.26 E-value=1.2 Score=36.48 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=53.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..++..+.+. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~~~ 336 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 336 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999988888875 567888888877655443 33456789999996 232 578889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 115
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.23 E-value=0.58 Score=39.28 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=48.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++-|..++..+++. +.++..++|+ ...+....+.++..+|+|+|- .+. ..+++. +..+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~-----v~e--~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD-----ISE--MGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG-----GGG--TSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc-----hHH--cCcccC-CcEE
Confidence 3799999999999988888775 5688888886 344455566678899999996 333 345654 5554
No 116
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.01 E-value=0.71 Score=43.88 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=59.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+++-+..+++.+++. +|+.++..++|+.+..+... .+.++..+|+|+|- .+. ..+++.++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip~v 883 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 883 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeecccCC
Confidence 3789999999999888888776 45778999999877554433 34457899999996 333 56889999
Q ss_pred cEEEEecccc
Q 026925 78 EILVLDEADR 87 (230)
Q Consensus 78 ~~lVvDEad~ 87 (230)
+++|+..+|.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999887765
No 117
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.95 E-value=1.3 Score=38.11 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=53.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-+.+++..++.. ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~~--~GiD~p~v~ 306 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----FG--MGINKPNVR 306 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----SC--TTTCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----hh--CCCCccCcc
Confidence 689999999999988888764 678888999877554433 444578999999973 22 568888999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 307 ~VI~ 310 (523)
T 1oyw_A 307 FVVH 310 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 118
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=89.94 E-value=0.27 Score=32.48 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++++|.+-.++...+..|.+. |++...+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~----G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN----GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT----TCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc----CCCEEEecChHH
Confidence 4579999999999999999999988 999888888763
No 119
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.90 E-value=1.4 Score=36.16 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=52.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+.+.++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~v~ 346 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQVS 346 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTTEE
T ss_pred EEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcccCC
Confidence 689999999999988888764 567888898877554433 34457889999996 232 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 120
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.42 E-value=1.7 Score=35.47 Aligned_cols=69 Identities=6% Similarity=0.140 Sum_probs=52.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~~~ 328 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQAVN 328 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTTEE
T ss_pred EEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999988888775 567888888877654433 34456789999995 222 568888999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 121
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.21 E-value=1.5 Score=35.53 Aligned_cols=72 Identities=8% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~--~Gidi~~~~ 320 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERVN 320 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----CS--SCBCCTTEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----hh--cCCCcccCC
Confidence 689999999999988888764 567888888876554433 334567899999952 22 568889999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-+.
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9986544
No 122
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=88.94 E-value=0.44 Score=40.15 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=45.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++-|.+++..++.. ++++..++|+ ...+....+.++..+|+|+|.- +. ..+++. ++++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v-----~e--~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI-----AE--MGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS-SCC--------CCCSEEEESSS-----TT--CCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh-----hh--eeeccC-ceEE
Confidence 4799999999999988888775 5678888884 3344555665678999999973 33 467777 8887
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 123
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.82 E-value=1.4 Score=38.58 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=53.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.+++..+... ++.+..++|+.+..+... .+.++..+|||+|.. +. ..+++.+++
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~~--~GID~p~V~ 337 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----FG--MGIDKPDVR 337 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----SC--TTCCCSCEE
T ss_pred eEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----hh--cCCCccccc
Confidence 689999999999998888764 678889999877655443 344578899999963 22 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 124
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=87.91 E-value=0.46 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~----G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA----GFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT----TCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc----CCcCEEEecCCHH
Confidence 4578999999999999999999988 995 888888864
No 125
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.61 E-value=1.6 Score=36.80 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=38.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
.+|++||++++..+.+.+.+. +.. .....-|.|-++++ +.. ........+.+|
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~~-----~~~-------------------~~~~~~V~T~dsfL--~~~-~~~~~~~~d~li 239 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANAS-----GII-------------------VATKDNVRTVDSFL--MNY-GKGARCQFKRLF 239 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTTT-----SCC-------------------CCCTTTEEEHHHHH--HTT-TSSCCCCCSEEE
T ss_pred eEEEeCCHHHHHHHHHHhhhc-----Ccc-------------------ccccceEEEeHHhh--cCC-CCCCCCcCCEEE
Confidence 479999999998877666432 100 00112245655532 222 333334578999
Q ss_pred EeccccccccccHHH
Q 026925 82 LDEADRLLDMGFQKQ 96 (230)
Q Consensus 82 vDEad~l~~~~~~~~ 96 (230)
|||+- |++.+....
T Consensus 240 iDE~s-m~~~~~l~~ 253 (446)
T 3vkw_A 240 IDEGL-MLHTGCVNF 253 (446)
T ss_dssp EETGG-GSCHHHHHH
T ss_pred EeCcc-cCCHHHHHH
Confidence 99998 555554433
No 126
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=87.44 E-value=0.38 Score=32.78 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHhC-CCCeEEEEcCchhH--HHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 178 LVDLLIKN-KSKKIIIYFMTCAC--VDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 178 l~~ll~~~-~~~~~lIF~~t~~~--~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+...+... +.+++++||.+-.. +...+..|... |+++..+.||+.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~----G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA----GFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH----TCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc----CCeEEEeCCcHH
Confidence 33444433 45789999999777 89999999988 999888888764
No 127
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=87.17 E-value=0.64 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+.+++++||.+-..+...+..|... |++...+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHEL----GYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHT----TCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHC----CCCEEEecCCHH
Confidence 45679999999999999999999988 886588888875
No 128
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=86.80 E-value=0.54 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCeEEEEcCch--hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTC--ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~--~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+- ..+...+..|... |+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~----G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQL----GFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHT----TCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHC----CCeEEEeCCcHH
Confidence 457899999997 6899999999988 999999988764
No 129
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=86.20 E-value=0.54 Score=31.05 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |++ +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~----G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQ----GYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHH----TCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHc----CCceEEEecCCHH
Confidence 5679999999988999999999998 995 888888763
No 130
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=86.06 E-value=0.55 Score=32.08 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=30.7
Q ss_pred CeEEEEc-CchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 188 KKIIIYF-MTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 188 ~~~lIF~-~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+++++|| ++-..+...+..|... |+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~----G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL----GVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT----TCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc----CCceEEEeCcHH
Confidence 7999999 5888888999999988 999999998864
No 131
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=85.96 E-value=0.6 Score=32.44 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.++++|||.+-.++...+..|... |+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~----G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY----GFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH----TCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc----CCcceEEEcCcHH
Confidence 5679999999999999999999988 99 5888988864
No 132
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=85.17 E-value=1.3 Score=39.54 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++-+.+++..++.. ++++..++|+ ...+....+.++..+|||+|- .+. ..+++. ++++
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~~V 477 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-ASRV 477 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-CcEE
Confidence 4799999999999888887764 5788888884 344444455567899999996 333 456766 7776
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 133
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=85.01 E-value=0.85 Score=32.02 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+ ++..+-||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~----G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA----GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT----TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc----CCcceEEEcCChh
Confidence 4578999999988899999999988 99 5999999984
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.98 E-value=2.1 Score=38.89 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhh------hCCCceEEEEEcCcchHHHHHHHH--------hcCCcEEEEcChHHHHHHh
Q 026925 2 GMIISPTRELSSQIYHVAQPFIS------TLPDVKSVLLVGGVEVKADVKKIE--------EEGANLLIGTPGRLYDIME 67 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~------~~~~~~v~~~~~~~~~~~~~~~l~--------~~~~~Iiv~TP~~l~~~l~ 67 (230)
+||++|+++-+.++...+++... ...++.+..++|+.+..++...+. ++...|||+|. .+.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae 380 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAE 380 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHH
Confidence 69999999999999888876332 224788999999988776655442 23568999997 333
Q ss_pred hCCcccCCcccEEE
Q 026925 68 RMDVLDFRNLEILV 81 (230)
Q Consensus 68 ~~~~~~~~~l~~lV 81 (230)
..+++.+++++|
T Consensus 381 --~GidIp~v~~VI 392 (773)
T 2xau_A 381 --TSLTIDGIVYVV 392 (773)
T ss_dssp --HTCCCTTEEEEE
T ss_pred --hCcCcCCeEEEE
Confidence 356777888766
No 135
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=84.76 E-value=0.76 Score=31.76 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM----GLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH----TCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc----CCCCeEEecCCHH
Confidence 4579999999999999999999988 995 888888763
No 136
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=84.76 E-value=0.63 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |++ +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA----GFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH----HCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc----CCCCeEEeCCcHH
Confidence 5579999999999999999999988 885 888888863
No 137
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.40 E-value=4 Score=33.79 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=49.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEc--------CcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~--------~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+||++++++-+..+.+.++.. ++++..++| +.+.. +....+.++..+|+|+|. .+. .
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~--~ 431 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE--E 431 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG--G
T ss_pred EEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----ccc--c
Confidence 699999999999988888875 567788887 44332 333344457789999994 222 4
Q ss_pred cccCCcccEEEEec
Q 026925 71 VLDFRNLEILVLDE 84 (230)
Q Consensus 71 ~~~~~~l~~lVvDE 84 (230)
++++..++++|.-+
T Consensus 432 Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 432 GLDVPEVDLVVFYE 445 (494)
T ss_dssp GGGSTTCCEEEESS
T ss_pred CCCchhCCEEEEeC
Confidence 67888888888544
No 138
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=84.33 E-value=0.91 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |++ +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH----GYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----TCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc----CCCCeEEeCCcHH
Confidence 4679999999999999999999988 995 888888763
No 139
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=84.29 E-value=1 Score=28.14 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMKQ 227 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~~ 227 (230)
.+.++++++|.+-.++...+..|.+. |++ +..+ ||+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~----G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEM----GYTHVENA-GGLKD 77 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHT----TCSSEEEE-EETTT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHc----CCCCEEec-cCHHH
Confidence 35679999999999999999999988 885 6666 77653
No 140
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=83.80 E-value=1.5 Score=37.00 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=48.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++-|.+++..+++. ++++..++++.. ......+.++..+|+|+|- .+. ..+++.. +++|
T Consensus 191 ~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 191 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GRVI 256 (451)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CEEE
Confidence 799999999999988888764 567777877654 3344455567899999996 333 4677777 6665
No 141
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=83.76 E-value=1.2 Score=30.66 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||.+=.++...+..|.+. |+ ++..+-||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~----G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALN----GFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHH----TCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHc----CCcceEEecCCcc
Confidence 4579999999988899999999988 99 5889999983
No 142
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=83.24 E-value=1.1 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~----G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSA----GFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHT----TCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHc----CCCCEEEecCHHH
Confidence 4578999999999999999999988 985 888888763
No 143
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=83.01 E-value=5 Score=35.80 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=54.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHh--cCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEE--EGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~--~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+|+++|+.-+.++...+++. ++.+..++|+.+.. .....+.+ +..+|+|+|- .+. ..+++ ++
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 67899998888877777763 67888999998766 44445544 6689999997 233 56788 89
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|.-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998887654
No 144
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=82.73 E-value=15 Score=30.97 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+|+..+.+-+..+.+.+... +.++..++|+.+..+... .+.++..+|+|+|+..+ . ..+++.++++
T Consensus 351 ~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~--~GiDip~v~~ 419 (510)
T 2oca_A 351 FVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----S--TGISVKNLHH 419 (510)
T ss_dssp EEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----H--HSCCCCSEEE
T ss_pred EEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----h--cccccccCcE
Confidence 45555566555555555543 347888888877554333 44467889999997643 3 3478888999
Q ss_pred EEEeccc
Q 026925 80 LVLDEAD 86 (230)
Q Consensus 80 lVvDEad 86 (230)
+|+...+
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988877
No 145
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=82.07 E-value=0.92 Score=40.05 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=30.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV 38 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~ 38 (230)
++|++||++|+.|+.+.+..+.... ++++..+.|+.
T Consensus 54 vli~t~T~~l~~Qi~~el~~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 54 VLYLVRTNSQEEQVIKELRSLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHS-CCCEEECCCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcc-CeEEEEEECCC
Confidence 6899999999999999999998766 68888777643
No 146
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=81.85 E-value=2.8 Score=36.99 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=48.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+++|++-|..++..+++. ++++..++|+ ...+....+.++..+|||+|. .+. ..+++. ++++|
T Consensus 358 ~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~~VI 423 (618)
T 2whx_A 358 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AGRVI 423 (618)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CSEEE
T ss_pred EEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ceEEE
Confidence 799999999999988888875 5678888875 333445556568899999997 333 456664 77663
No 147
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.49 E-value=2 Score=35.16 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=44.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.+... ++.+..++|+.+..+.... +.++..+|+|+|.- +. ..+++.+++
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidip~v~ 350 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-----LA--RGIDVQQVS 350 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-----CC----CCGGGCS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-----cc--cCCCccCCC
Confidence 689999999999888877764 5677888888776544443 33456899999973 22 467888888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8874
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=79.41 E-value=1.1 Score=31.49 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCC-CcEEEEeecCc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQT 118 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~-~q~i~~SAt~~ 118 (230)
+.+.+++|+||++.+.... ...+..+++.+... ..++++++..+
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 3467899999999865544 55666666655433 33255555543
No 149
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=79.23 E-value=3.8 Score=33.02 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 170 EPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 170 ~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.+.|+..+-++|... .+.+++||++..+..+-+..++... |++..-+-|....
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~----~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN----KVHIKRYDGHSIK 161 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS----SCEEEESSSCCC-
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC----CCceEeCCCCchh
Confidence 4678998888888743 6679999999999999999999987 9998888887543
No 150
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=79.20 E-value=3 Score=34.31 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=49.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEE-EEEcCcchHHHHHHHHhcCCcEEEE----cChHHHHHHhhCCcccCCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSV-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~-~~~~~~~~~~~~~~l~~~~~~Iiv~----TP~~l~~~l~~~~~~~~~~ 76 (230)
+||+++|+.-|..+...++.. ++++. .++|+ ..+ ...+.++..+|+|+ |. .+. ..+++.+
T Consensus 255 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~-----~~~--~GiDip~ 319 (414)
T 3oiy_A 255 ILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KLT--RGVDLPE 319 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC-----CCC--CCCCCTT
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc-----hhh--ccCcccc
Confidence 799999999999988888774 56666 55554 222 66666788999999 54 222 5688888
Q ss_pred -ccEEEEec
Q 026925 77 -LEILVLDE 84 (230)
Q Consensus 77 -l~~lVvDE 84 (230)
++++|.-+
T Consensus 320 ~v~~VI~~~ 328 (414)
T 3oiy_A 320 RIKYVIFWG 328 (414)
T ss_dssp TCCEEEEES
T ss_pred ccCEEEEEC
Confidence 89988543
No 151
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=80.03 E-value=0.41 Score=34.45 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=48.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~~~ 100 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPDVS 100 (170)
Confidence 689999999999888887765 567777787765443333 33346788999994 222 456677777
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.-
T Consensus 101 ~Vi~~ 105 (170)
T 2yjt_D 101 HVFNF 105 (170)
Confidence 77753
No 152
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=78.55 E-value=2 Score=33.54 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 178 LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 178 l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+...+...+.+++++||.+-.+|...+..|... |+ ++..+.||+.
T Consensus 172 l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~----Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 172 VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKEL----GFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHH----TCSSEEEETTHHH
T ss_pred HHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHc----CCCCEEEecCHHH
Confidence 333444456789999999999999999999998 99 5888888763
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=77.79 E-value=24 Score=27.87 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCcEEEEcChH-------HHHHHhhCCcc-cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 51 GANLLIGTPGR-------LYDIMERMDVL-DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 51 ~~~Iiv~TP~~-------l~~~l~~~~~~-~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+|++.-.|+. +..++..-... ...+.+.+|+||||.|-... ...+...+..-|...-+++.+
T Consensus 49 ~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 46888877641 33444331111 23567999999999885443 344445555555555555543
No 154
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=76.13 E-value=7.6 Score=30.47 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=45.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+.+.++ .+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 223 ~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 286 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIPLVE 286 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCCCBS
T ss_pred EEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 6899999998876544332 3556777766554433 33456789999995 333 568888999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-.
T Consensus 287 ~Vi~~~ 292 (337)
T 2z0m_A 287 KVINFD 292 (337)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 988643
No 155
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.64 E-value=3.6 Score=30.53 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=38.5
Q ss_pred CCCcHHH-HHHHHHh----CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 171 PDEKPSQ-LVDLLIK----NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 171 ~~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...|... +..++.. ....++||.|+++.-+.+++..+.......+.++..++|+.+..
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchH
Confidence 3456543 4455542 34569999999999999999988876444478889999987643
No 156
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=74.29 E-value=1.7 Score=36.73 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=44.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++-|..++..+++. ++++..+++... ......+.++..+|||+|-- +. ..+++.. +++|
T Consensus 193 ~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~v-----~~--~GiDip~-~~VI 258 (459)
T 2z83_A 193 TVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTDI-----SE--MGANFGA-SRVI 258 (459)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESSC-----C-----CCCSC-SEEE
T ss_pred EEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECCh-----HH--hCeecCC-CEEE
Confidence 799999999999988888775 567777877522 22233344567899999963 22 3466666 5554
No 157
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.92 E-value=8.1 Score=29.38 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....++||.++|++-|.+++..+.+.....|+++..++|+.+.
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 151 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 151 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCCh
Confidence 3456899999999999999988877643447889999998753
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.86 E-value=2.9 Score=33.54 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=28.3
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.+.+.+|+||+|. ++......+.+++...+....+++.|..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 3667999999998 5555566677777776666556665544
No 159
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=73.68 E-value=36 Score=27.95 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=43.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCC-ceEEE-EEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPD-VKSVL-LVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~-~~v~~-~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+++++||++-|..+++.++.+....|. ++-.. -.+... + .+ ..+..|.+.+-. -.-+++ .+.++
T Consensus 211 v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~~~~~----I-~f-~nGs~i~~lsa~--~~slrG------~~~~~ 276 (385)
T 2o0j_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGS----I-EL-DNGSSIGAYASS--PDAVRG------NSFAM 276 (385)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEECSSE----E-EE-TTSCEEEEEECS--HHHHHT------SCCSE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccCCccE----E-Ee-CCCCEEEEEECC--CCCccC------CCCCE
Confidence 578999999999999999988876653 21110 011100 0 11 234445444321 123343 33579
Q ss_pred EEEeccccccc
Q 026925 80 LVLDEADRLLD 90 (230)
Q Consensus 80 lVvDEad~l~~ 90 (230)
+|+||+|.+-+
T Consensus 277 viiDE~a~~~~ 287 (385)
T 2o0j_A 277 IYIEDCAFIPN 287 (385)
T ss_dssp EEEESGGGSTT
T ss_pred EEechhhhcCC
Confidence 99999998754
No 160
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=73.33 E-value=6.8 Score=33.26 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=36.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..++||.|+++.-+..++..+.......|+++..+||+.+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDS 93 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcch
Confidence 679999999999999999998887545589999999998654
No 161
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=72.25 E-value=2.8 Score=29.70 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCeEEEEcCch---------hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTC---------ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~---------~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
..+++++||.+- ..+..++..|... |+++..+.||+.
T Consensus 92 ~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~----G~~v~~L~GG~~ 137 (158)
T 3tg1_B 92 FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE----GKEPLVLKGGLS 137 (158)
T ss_dssp TTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTT----TCCEEEETTHHH
T ss_pred CCCeEEEEECCCCcccccCcchHHHHHHHHHHhC----CCcEEEeCCcHH
Confidence 357999999987 4588889999887 999999998864
No 162
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=71.30 E-value=3.8 Score=36.47 Aligned_cols=63 Identities=11% Similarity=0.227 Sum_probs=46.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+++|++-+.++++.+++. ++++..++|+.+..+ ..+++.+|||+|.- +. ..+++. ++++|
T Consensus 399 vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e----r~~~~~~VLVATdV-----ae--rGIDId-V~~VI 461 (666)
T 3o8b_A 399 HLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV----IPTIGDVVVVATDA-----LM--TGYTGD-FDSVI 461 (666)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG----SCSSSCEEEEECTT-----HH--HHCCCC-BSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH----HHhCCCcEEEECCh-----HH--ccCCCC-CcEEE
Confidence 689999999999988888764 678889999876543 22466799999972 22 234553 77766
No 163
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.73 E-value=4.6 Score=29.99 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=39.2
Q ss_pred CcccEEEEeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 75 RNLEILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
.+.+++|+||+-..+..+ -.+.+..++...|....+|+.+-..++.+..++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 668999999998765554 3556777777788788888877777777766664
No 164
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=70.35 E-value=6 Score=30.79 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhh-hhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLP-RLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~-~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+...+.. ...+++++||.+-..+...+..|. .. |+ ++..+.||+.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~----G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLL----GYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTS----CCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHc----CCCCcceeCchHH
Confidence 445555554 356799999999889999999998 77 88 6888888763
No 165
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=70.35 E-value=3.9 Score=31.81 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+..++.. ...+++++||.+=.++...+..|... |+ ++..+.||+.
T Consensus 216 ~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~----G~~~v~~~~GG~~ 266 (280)
T 1urh_A 216 DELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATL----DVPNVKLYDGAWS 266 (280)
T ss_dssp HHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHT----TCSSCEEECCSCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHc----CCCCceeeCChHH
Confidence 345555542 35679999999988999999999988 99 5889999875
No 166
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=69.74 E-value=5 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.-.++++||.+.-+|......+..++..+....|+++.|
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 347999999999999887888888887776677777764
No 167
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.64 E-value=9.4 Score=32.43 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=33.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..++||.|+++.-+..++..+.......|+++..+||+.+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 96 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 96 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcc
Confidence 679999999999999999988887544489999999998654
No 168
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=69.13 E-value=7 Score=29.18 Aligned_cols=56 Identities=18% Similarity=0.057 Sum_probs=39.9
Q ss_pred CCcHHH-HHHHHHh----CCCCeEEEEcCchhHHHHHHHHhhhhhcc-CCceEEeccCCCCC
Q 026925 172 DEKPSQ-LVDLLIK----NKSKKIIIYFMTCACVDYWGVVLPRLAVL-KSLSLIPLHGKMKQ 227 (230)
Q Consensus 172 ~~k~~~-l~~ll~~----~~~~~~lIF~~t~~~~~~l~~~L~~~~~~-~g~~~~~lh~~~~~ 227 (230)
..|... +..++.. ....++||.|++++-+++++..+...... .+.++..++|+.+.
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 133 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPL 133 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCH
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCH
Confidence 456533 4444443 24569999999999999999999876322 26788999998753
No 169
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=68.92 E-value=1 Score=38.12 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|++||+.-|..++..+... +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~v~ 403 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCccccCC
Confidence 689999999998888887765 456777788766544333 33356789999995 333 457788888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 876
No 170
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=68.53 E-value=6.2 Score=30.43 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
.+.+++++||.+-.++...+..|... |+ ++..+.||+.
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKAL----GYPRVKGYAGSWG 259 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHT----TCSCEEECSSHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHc----CCCCceeeCCcHH
Confidence 35679999999988999999999987 99 4888888753
No 171
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=67.95 E-value=4.9 Score=30.26 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+.+++++||.+-.++...+..|... |.++..+.||+.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~----G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSL----GVRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHT----TCEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHc----CCCcEEecCcHH
Confidence 35679999999999999999999987 777888888763
No 172
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=67.69 E-value=28 Score=32.71 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=68.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh-------CCCceEEEEEcCcc---------------------h-------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST-------LPDVKSVLLVGGVE---------------------V------------- 40 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~-------~~~~~v~~~~~~~~---------------------~------------- 40 (230)
++|+|+|++-|..++..+.+.... .+++++..+.++.. .
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 799999999999999999988632 22456655544321 0
Q ss_pred -------------------HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHH
Q 026925 41 -------------------KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 101 (230)
Q Consensus 41 -------------------~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~ 101 (230)
.+-...+.++..+|+|+|-- +. .+++...+.++.+|--- .....+++|-
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~-----ll--tGfDiP~l~tlylDkpl-----~~~~liQaIG 687 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM-----FL--TGFDAPTLNTLFVDKNL-----RYHGLMQAFS 687 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST-----TS--SSCCCTTEEEEEEESCC-----CHHHHHHHHH
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch-----HH--hCcCcccccEEEEccCC-----Cccceeehhh
Confidence 01112344567899999863 22 56888899899888331 2234455544
Q ss_pred HhCCCC------CcEEEEeecCchHHHHHHHhccC
Q 026925 102 SRLPKL------RRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 102 ~~l~~~------~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
+-.+.. ..++-| ......+......|..
T Consensus 688 RtnR~~~~~K~~G~IVdf-~~~~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 688 RTNRIYDATKTFGNIVTF-RDLERSTIDAITLFGD 721 (1038)
T ss_dssp TTCCCCCTTCCSEEEEES-SCCHHHHHHHHHHTSC
T ss_pred ccCcCCCCCCCcEEEEEc-cccHHHHHHHHHHHhC
Confidence 333211 123333 3455566666665544
No 173
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=67.40 E-value=22 Score=30.67 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=50.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhC---CCceEEEEEcCcch--HHHHHHHHhcCCc---EEEEcChHHHHHHhhCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTL---PDVKSVLLVGGVEV--KADVKKIEEEGAN---LLIGTPGRLYDIMERMDVLD 73 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~---~~~~v~~~~~~~~~--~~~~~~l~~~~~~---Iiv~TP~~l~~~l~~~~~~~ 73 (230)
+||++++++-|..+.+.+.+..... .+-.+..++|+.+. .+....+.++..+ |+|+|- ++. ..++
T Consensus 442 ~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~--~GiD 514 (590)
T 3h1t_A 442 TIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLT--TGVD 514 (590)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTT--TTCC
T ss_pred EEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhh--cCcc
Confidence 6999999999999999998875321 02235556666543 2233344333333 777764 222 5689
Q ss_pred CCcccEEEEeccc
Q 026925 74 FRNLEILVLDEAD 86 (230)
Q Consensus 74 ~~~l~~lVvDEad 86 (230)
+.+++++|++..-
T Consensus 515 ip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 515 APTCKNVVLARVV 527 (590)
T ss_dssp CTTEEEEEEESCC
T ss_pred chheeEEEEEecC
Confidence 9999999986653
No 174
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=67.10 E-value=8.8 Score=36.32 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=54.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEE-EEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-cc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-LLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-LE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~-~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l~ 78 (230)
.+||++||++-|..+...+... ++++. .++|. ..+ ...+.++..+|+|+|..- .+.+. ..+++.+ ++
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~-Tdvla--rGIDip~~V~ 379 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAY-YGKLT--RGVDLPERIK 379 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTT-HHHHC--CSCCCTTTCC
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCC-CCeeE--ecCcCCCCCC
Confidence 3799999999999988888775 56766 66663 233 667767889999993210 12343 5789999 99
Q ss_pred EEEEecccc
Q 026925 79 ILVLDEADR 87 (230)
Q Consensus 79 ~lVvDEad~ 87 (230)
++|.=+.-.
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 998766665
No 175
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=66.97 E-value=7.7 Score=28.97 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=33.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
.+.++||.|+|+.-|..++..+.......++++..++|+.+.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 137 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--C
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCH
Confidence 456899999999999999999988743445889999998754
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=66.71 E-value=4.8 Score=31.86 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=27.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
.+.+.+++||+|.+........+.+++...+...++++.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999988623345556666666656666666443
No 177
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=66.60 E-value=3.4 Score=32.15 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhH-HHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCAC-VDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~-~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..+...+.. .+.++++|||.+-.. +..++..|... |+ ++..+.||+.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~----G~~~v~~l~GG~~ 123 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTF----GVEKVSILGGGLA 123 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHT----TCSCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc----CCCCEEEecCCHH
Confidence 334444443 356799999998666 88999999988 99 6888888753
No 178
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=65.88 E-value=8.2 Score=29.06 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=35.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
.+.++||.|+|++-|++++..+.+.....|+++..++|+.+.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~ 142 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 142 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCCh
Confidence 456899999999999999888887655558899999998764
No 179
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=65.49 E-value=2.9 Score=37.06 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=58.5
Q ss_pred eEEEeCChhhHHHHHHHHHHh--hhhCCCceEEEEEcC--------cchHHHHH---HHHhcCCcEEEEcChHHHHHHhh
Q 026925 2 GMIISPTRELSSQIYHVAQPF--ISTLPDVKSVLLVGG--------VEVKADVK---KIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l--~~~~~~~~v~~~~~~--------~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
+||.++|+..+..+.+.++.. ... .++++..++|+ .+..++.. .+.++..+|||+|-. +.
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~-----~~- 475 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV-----AE- 475 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS-----CC-
T ss_pred EEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cc-
Confidence 699999999999999988864 111 15788888887 55554444 333467899999962 22
Q ss_pred CCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 69 MDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 69 ~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
.++++.+++++|.=+ +.+.....++++-+--.....+++++.
T Consensus 476 -~GIDip~v~~VI~~d----~p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 476 -EGLDIKECNIVIRYG----LVTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp -TTSCCCSCCCCEEES----CCCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred -cCCccccCCEEEEeC----CCCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 567888888887322 223334444444442122334455544
No 180
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=65.34 E-value=11 Score=26.31 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCeEEEEc-CchhHHHHHH----HHhhhhhccCCc---eEEeccCCCC
Q 026925 177 QLVDLLIKNKSKKIIIYF-MTCACVDYWG----VVLPRLAVLKSL---SLIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~~~~~~lIF~-~t~~~~~~l~----~~L~~~~~~~g~---~~~~lh~~~~ 226 (230)
.+...+...+...++++| .+-.++...+ ..|.+. |+ ++..+.||+.
T Consensus 58 ~l~~~l~~~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~----G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 58 KLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKL----GYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHTTCCEEEEECSSSSSHHHHHHHHHHHHHHHH----TCCCSEEEEETTHHH
T ss_pred HHHHHhcccCCCEEEEEcCCCCCccHHHHHHHHHHHHHc----CCCCCCEEEEcCcHH
Confidence 344444333323444459 4555554444 777777 86 6888888764
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=64.30 E-value=37 Score=24.80 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc-cHHHHHHHHHhCCCC-CcEEEEeec
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKL-RRTGLFSAT 116 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~~-~q~i~~SAt 116 (230)
+..+++.+...+...+.. ..-.+.+-..+++||+|.+.... ....+..+++..... ...++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTA-LLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp TCCEEEEEGGGGGGSCGG-GGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred CCeEEEEEHHHHHHHHHH-HHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 456666665544332211 11123556799999999886532 244444554444332 232444444
No 182
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.11 E-value=49 Score=30.10 Aligned_cols=25 Identities=12% Similarity=-0.112 Sum_probs=20.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
....+-|.+.....+..+...|.+.
T Consensus 674 ~~~~IgVItpy~~Q~~~I~~~L~~~ 698 (802)
T 2xzl_A 674 KPEQIGVITPYEGQRAYILQYMQMN 698 (802)
T ss_dssp CGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CcccEEEEcccHHHHHHHHHHHHHc
Confidence 4467899999999999999988654
No 183
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=63.62 E-value=20 Score=31.45 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhh
Q 026925 187 SKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
+++++||++|....+.++..+.
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHH
Confidence 4579999999999999998876
No 184
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=63.12 E-value=13 Score=33.63 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=33.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.++||.|+++.-+..++..+.+.....|+++..+||+.+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 337 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 337 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchh
Confidence 679999999999999999888887544489999999998654
No 185
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=62.99 E-value=6 Score=30.51 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCchh-HHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCA-CVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
.+.++++|||.+-. .+.+++..|... |+ ++..+.||+.
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~----G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVI----GQQRYHYLNGGLT 118 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHT----TCCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHc----CCCCeEEecCCHH
Confidence 35678999999876 888999999888 88 4788888753
No 186
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.57 E-value=9.7 Score=28.56 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=31.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...++||.++|++-|.+++..+.+.....+.++..++|+.+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 138 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 138 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCch
Confidence 456999999999999999999987743446788888887654
No 187
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=62.56 E-value=2.8 Score=35.83 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=45.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-|..+...+.+. +..+..++|+.+.. .....+.++..+|+|+|- .+. ..+++.+++
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~--~GiDip~v~ 427 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA--RGIDVSQVN 427 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------------CCCTTCC
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh--cCCCccCCC
Confidence 689999999999888777653 45667777765432 233455567889999997 333 468888899
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|..
T Consensus 428 ~VI~~ 432 (508)
T 3fho_A 428 LVVNY 432 (508)
T ss_dssp EEEC-
T ss_pred EEEEE
Confidence 98843
No 188
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=62.44 E-value=29 Score=29.85 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.9
Q ss_pred CCCeEEEEcCchhHHHHHHHH
Q 026925 186 KSKKIIIYFMTCACVDYWGVV 206 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~ 206 (230)
.+++++||++|.+..+.++..
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~ 412 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR 412 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT
T ss_pred CCCCEEEEecCHHHHHHHHHh
Confidence 445899999999999999863
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=61.97 E-value=16 Score=26.29 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=25.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-..+++||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 55679999999987543 3445566666655555555544
No 190
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=61.78 E-value=12 Score=34.79 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcC--CcEEEEcChHHHHHHhhCCcccCCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~--~~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
++|++++++-+..+...+... . ++++..++|+.+..+. ...+.++. ++|+|+|.- +. ..+++.+
T Consensus 506 ~iVF~~~~~~~~~l~~~L~~~---~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v-----~~--~GlDl~~ 574 (968)
T 3dmq_A 506 VLVICAKAATALQLEQVLRER---E-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI-----GS--EGRNFQF 574 (968)
T ss_dssp CCEECSSTHHHHHHHHHHHTT---T-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC-----TT--CSSCCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHH---c-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch-----hh--cCCCccc
Confidence 689999999998888777742 2 6788999998664433 33443444 999999942 22 5788899
Q ss_pred ccEEEEeccccccccccHHHHHHHHH
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIIS 102 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~ 102 (230)
++++|+-+.+ ++.....+++-+
T Consensus 575 ~~~VI~~d~p----~~~~~~~Q~~GR 596 (968)
T 3dmq_A 575 ASHMVMFDLP----FNPDLLEQRIGR 596 (968)
T ss_dssp CCEEECSSCC----SSHHHHHHHHHT
T ss_pred CcEEEEecCC----CCHHHHHHHhhc
Confidence 9999976655 343444444433
No 191
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=61.74 E-value=4.9 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=22.3
Q ss_pred ccEEEEeccccccccc--cHHHHHHHHHhCC----CCCcEEEEeec
Q 026925 77 LEILVLDEADRLLDMG--FQKQISYIISRLP----KLRRTGLFSAT 116 (230)
Q Consensus 77 l~~lVvDEad~l~~~~--~~~~~~~i~~~l~----~~~q~i~~SAt 116 (230)
-..+||||||.++... ..+. .+++..+. ...++++++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985321 1111 12333332 34577777666
No 192
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=61.74 E-value=22 Score=25.67 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=22.1
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
+.+++++||++.+ +.++.+.+..+.+. ...+++..
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~~---~~~Vi~~G 110 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLDR---GIDVFCAG 110 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHHC---CCCEEEEe
Confidence 5789999999975 33455655555543 44555433
No 193
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=61.60 E-value=38 Score=30.82 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc-------------------------------------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV------------------------------------------- 38 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~------------------------------------------- 38 (230)
+++++||...|.++...+... ++++.-+.+..
T Consensus 403 ilv~a~tn~A~~~l~~~l~~~-----g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 477 (800)
T 2wjy_A 403 VLVCAPSNIAVDQLTEKIHQT-----GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD 477 (800)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----TCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHH
T ss_pred EEEEcCcHHHHHHHHHHHHHh-----CcceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHH
Q ss_pred -----chHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 39 -----EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 39 -----~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
........-.-..++||++|..... . ..+.-..++++|||||-...... .++..+....+++++
T Consensus 478 ~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~----~-~~l~~~~fd~viIDEAsQ~~e~~------~li~l~~~~~~~ilv 546 (800)
T 2wjy_A 478 EKRYRALKRTAERELLMNADVICCTCVGAG----D-PRLAKMQFRSILIDESTQATEPE------CMVPVVLGAKQLILV 546 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEETGGGG----C-TTTTTCCCSEEEETTGGGSCHHH------HHHHHTTTBSEEEEE
T ss_pred HHHHHHHHHHHHHhhhccCCEEEEchhhhC----C-hhhhcCCCCEEEEECCCCCCcHH------HHHHHHhcCCeEEEe
Q ss_pred e
Q 026925 114 S 114 (230)
Q Consensus 114 S 114 (230)
.
T Consensus 547 G 547 (800)
T 2wjy_A 547 G 547 (800)
T ss_dssp E
T ss_pred c
No 194
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=61.30 E-value=7.5 Score=30.06 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCch-hHHHHHHHHhhhhhccCCc-eEEeccCCC
Q 026925 185 NKSKKIIIYFMTC-ACVDYWGVVLPRLAVLKSL-SLIPLHGKM 225 (230)
Q Consensus 185 ~~~~~~lIF~~t~-~~~~~l~~~L~~~~~~~g~-~~~~lh~~~ 225 (230)
.+.++++|||.+- ..+.+++..|... |+ ++..+.||+
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~----G~~~v~~l~GG~ 113 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLY----GHEKVKLLDGGR 113 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHT----TCCSEEEETTHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHc----CCCcEEEecCCH
Confidence 3567899999985 4678888888888 88 688888875
No 195
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=61.17 E-value=65 Score=27.96 Aligned_cols=97 Identities=9% Similarity=0.209 Sum_probs=52.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCC-ceEEEE-EcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPD-VKSVLL-VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~-~~v~~~-~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+++++||++.|..++..++.+....|. ++.... .+... + .+ ..+..|.+.+-. -.-+++ . +.++
T Consensus 211 i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~----i-~~-~nGs~i~~~s~~--~~~lrG-~-----~~~~ 276 (592)
T 3cpe_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGS----I-EL-DNGSSIGAYASS--PDAVRG-N-----SFAM 276 (592)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSE----E-EE-TTSCEEEEEECC--HHHHHH-S-----CCSE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCccE----E-Ee-cCCCEEEEEeCC--CCCccC-C-----Ccce
Confidence 689999999999999999988877653 221111 01110 0 11 244555544321 123343 2 3568
Q ss_pred EEEeccccccccccHHHHHHHHHhCC--CCCcEEEEe
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFS 114 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~S 114 (230)
+|+||+|..-+. .+.+..+...+. ...++++.|
T Consensus 277 ~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 277 IYIEDCAFIPNF--HDSWLAIQPVISSGRRSKIIITT 311 (592)
T ss_dssp EEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEEEEE
T ss_pred EEEehhccCCch--hHHHHHHHHHhccCCCceEEEEe
Confidence 999999977442 233344443343 234444443
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=60.92 E-value=9.7 Score=29.70 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=11.2
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
-..+++||+|.+.
T Consensus 131 ~~vl~iDEid~l~ 143 (309)
T 3syl_A 131 GGVLFIDEAYYLY 143 (309)
T ss_dssp TSEEEEETGGGSC
T ss_pred CCEEEEEChhhhc
Confidence 3599999999886
No 197
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.73 E-value=26 Score=31.14 Aligned_cols=74 Identities=7% Similarity=0.150 Sum_probs=50.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhh--CC-----------------------------CceEEEEEcCcchHHHHHHH--
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIST--LP-----------------------------DVKSVLLVGGVEVKADVKKI-- 47 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~--~~-----------------------------~~~v~~~~~~~~~~~~~~~l-- 47 (230)
.+||++||+.-+..+...+.+.... ++ +..+...+|+.+..++....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 3799999999999988888764321 00 12477788887766554433
Q ss_pred -HhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 48 -EEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 48 -~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
.++..+|+|+|. .+. ..+++..+.++|
T Consensus 334 f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI 361 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLA--AGVNLPARTVII 361 (715)
T ss_dssp HHTTCSCEEEECG-----GGG--GSSCCCBSEEEE
T ss_pred HHcCCCeEEEECh-----HHh--cccCCCceEEEE
Confidence 346789999996 233 457777777755
No 198
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=60.11 E-value=11 Score=27.93 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.++||.++|++-|++++..+.... ..+.+...++|+.+.+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~ 134 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRN 134 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC-----
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChH
Confidence 55789999999999999999998763 4578899999887654
No 199
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=60.06 E-value=15 Score=27.71 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
..++..-...|. ..+++++.+.-...++-+.+.+..
T Consensus 169 ~~riTlt~~~I~--~A~~i~ll~~G~~Ka~av~~~l~g 204 (226)
T 3lwd_A 169 QARITLSASRLA--DAGLHVLHITGNDKRRVLAEALAG 204 (226)
T ss_dssp SCEEEECHHHHT--CBSCEEEEEESHHHHHHHHHHHHC
T ss_pred CcEEEcCHHHHH--hhCeEEEEEECHHHHHHHHHHHcC
Confidence 345555556663 456788888889999999998874
No 200
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.01 E-value=39 Score=25.35 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 170 EPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 170 ~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
....|......++... ..+++|+|+++.-+++++..+.+. |.+ +..++|+..
T Consensus 117 tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK 169 (237)
T ss_dssp SSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC
Confidence 3456766655555554 578999999999999999999985 888 888888764
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=59.97 E-value=8.3 Score=30.51 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCcEEEEcChHHHHHHhh---CCcc-----cCCcccEEEEecccccccc-ccHHHHHHHHHhCC-CCCcEEEEeecC
Q 026925 51 GANLLIGTPGRLYDIMER---MDVL-----DFRNLEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQ 117 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~---~~~~-----~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~-~~~q~i~~SAt~ 117 (230)
+..++..+...+..-+.. .... ...+..++++||+|.+... .....+..+++.+. ...++++ +++-
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii-~~~~ 140 (324)
T 1l8q_A 65 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIIL-ASDR 140 (324)
T ss_dssp TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEE-EESS
T ss_pred CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEE-EecC
Confidence 567777776655332211 0110 0234679999999998652 23444445554433 2344444 5553
No 202
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.91 E-value=17 Score=28.28 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=25.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-..+|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 55789999999987543 2445555666655555666543
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=59.83 E-value=6.2 Score=28.17 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCcccEEEEeccccc-cccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 74 FRNLEILVLDEADRL-LDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 74 ~~~l~~lVvDEad~l-~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+.+.+++|+||++.. ++......+..+++........+++|+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 456789999999953 333344556666665543333455555544
No 204
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=59.49 E-value=14 Score=26.70 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...+++|.|+++.-+.+++..+.+. ..+.++..++|+.+.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~--~~~~~~~~~~~~~~~ 110 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGY 110 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHH--CTTSCEEEECSSSCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHH--hhcceEEEEECCCCh
Confidence 4568999999999999999999887 345788888988753
No 205
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=59.21 E-value=6.7 Score=26.12 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=29.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhhhcc---CCceEEeccCCCC
Q 026925 188 KKIIIYFMTCACVDYWGVVLPRLAVL---KSLSLIPLHGKMK 226 (230)
Q Consensus 188 ~~~lIF~~t~~~~~~l~~~L~~~~~~---~g~~~~~lh~~~~ 226 (230)
++++++|.+-..+...+..|.+.... .+.++..+.||+.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 49999999988888899888876100 1347888888763
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=59.18 E-value=8.7 Score=31.42 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=23.4
Q ss_pred cccEEEEeccccccc---cccHHHHHHHHHhCCCC
Q 026925 76 NLEILVLDEADRLLD---MGFQKQISYIISRLPKL 107 (230)
Q Consensus 76 ~l~~lVvDEad~l~~---~~~~~~~~~i~~~l~~~ 107 (230)
.-.++|+||||.+++ ..+.+.+..+.+..++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~ 296 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY 296 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh
Confidence 356899999999996 23566677777777543
No 207
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=58.90 E-value=15 Score=26.97 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhcc-CCceEEeccCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVL-KSLSLIPLHGKMK 226 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~-~g~~~~~lh~~~~ 226 (230)
..++||.|++++-+++++..+.+.... ++.++..++|+.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~ 122 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 122 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCC
Confidence 348999999999999999988776322 2688999999876
No 208
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.55 E-value=8.8 Score=29.04 Aligned_cols=41 Identities=12% Similarity=-0.058 Sum_probs=33.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.++||.|+|++-|.+++..+.......+.++..++|+.+.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADT 140 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCH
Confidence 35899999999999999999887643446788889988764
No 209
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.15 E-value=12 Score=34.32 Aligned_cols=53 Identities=6% Similarity=-0.066 Sum_probs=42.3
Q ss_pred HHHHHHHH-HhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 175 PSQLVDLL-IKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 175 ~~~l~~ll-~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....+.++ ....+..++|.|+|++-|.+.+..+.......|+++.++.||++.
T Consensus 111 laf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~ 164 (844)
T 1tf5_A 111 LTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSK 164 (844)
T ss_dssp HHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCH
Confidence 35555555 456677899999999999998888877765669999999999874
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=58.10 E-value=20 Score=28.66 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=24.0
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHh--CC-CCCcEEEEeecCc
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISR--LP-KLRRTGLFSATQT 118 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~--l~-~~~q~i~~SAt~~ 118 (230)
...-.+++||+|.+.+. ..+..+++. .. ...-+|+.++|..
T Consensus 131 ~~~~ii~lDE~d~l~~q---~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE---KILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCCT---HHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhcc---hHHHHHHhcccccCCcEEEEEEecCcc
Confidence 34568999999999833 233333321 11 2345667777764
No 211
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=56.96 E-value=16 Score=26.31 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCcH-HHHHHHHHhC----CCCeEEEEcCchhHHHHHHHHhhhhhccC-CceEEeccCCCCC
Q 026925 172 DEKP-SQLVDLLIKN----KSKKIIIYFMTCACVDYWGVVLPRLAVLK-SLSLIPLHGKMKQ 227 (230)
Q Consensus 172 ~~k~-~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~~~~~-g~~~~~lh~~~~~ 227 (230)
..|. ..+..++... ...+++|.|+++.-++++++.+.+..... +.++..++|+.+.
T Consensus 51 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (206)
T 1vec_A 51 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL 112 (206)
T ss_dssp STTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCH
T ss_pred CchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccH
Confidence 3454 3344444432 34589999999999999999887763222 6788888888653
No 212
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=56.91 E-value=14 Score=28.43 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhh-hhccCCce-EEeccCCCC
Q 026925 177 QLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPR-LAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~-~~~~~g~~-~~~lh~~~~ 226 (230)
.+...+.. ...+++++||.+-..+...+..|.+ . |++ +..+.||+.
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~----G~~~v~~l~GG~~ 263 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELL----GHQNVKNYDGSWT 263 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTS----CCSCEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHc----CCCcceeeCchHH
Confidence 44455542 3567999999998889889999885 6 884 888888753
No 213
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=56.70 E-value=9.6 Score=26.66 Aligned_cols=41 Identities=5% Similarity=-0.040 Sum_probs=25.5
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhh----hhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPR----LAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~----~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||. +-......+..|.+ .+...|+ ++..+.||+.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 4568999998 65555555554432 1112288 6888989874
No 214
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=56.65 E-value=12 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=24.8
Q ss_pred cccEEEEecccccccc-ccHHHHHHHHHhCC-CCCcEEEEee
Q 026925 76 NLEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSA 115 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~-~~~q~i~~SA 115 (230)
+.+.+++||+|.+... .....+..++..+. ...++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6789999999998763 23444555554433 3455555443
No 215
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.48 E-value=15 Score=29.51 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=34.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...++||.|+++.-+.+++..+.+.....+.++..++|+.+.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 129 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCch
Confidence 456999999999999999998887644457889999998753
No 216
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=56.29 E-value=9 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchh-HHHHHHHHhhhhhccCCc-eEEeccCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCA-CVDYWGVVLPRLAVLKSL-SLIPLHGKM 225 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~-~~~~lh~~~ 225 (230)
..+...+.. .+.++++|||.+-. .+.+++..|+.. |+ ++..+.||+
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~----G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLF----GHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHT----TCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc----CCCceEEccCCH
Confidence 344555544 25679999999866 788999999888 98 488888875
No 217
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=56.28 E-value=19 Score=29.84 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+...+.. .+.+++++||.+-..+..++..|... |+ ++..+.||+.
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~----G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYA----GVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHH----TCSCEEEETTTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHc----CCCCeEEECCCHH
Confidence 445555543 35678999999988999999999988 98 5888888763
No 218
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=56.15 E-value=15 Score=27.85 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
..++..-...|.+ .+++++.+.-...++-+.+.+..
T Consensus 173 ~~riTlt~~~I~~--A~~i~ll~~G~~Ka~av~~~l~g 208 (232)
T 3lhi_A 173 HERISMTLDAIAH--TGHVFLAIQGEEKKAVFDQAAQG 208 (232)
T ss_dssp SCEEEECHHHHHT--CSEEEEEEESHHHHHHHHHHHTS
T ss_pred CceEEecHHHHHh--cCeEEEEEECHHHHHHHHHHHhC
Confidence 3456655566643 46788888889999999988864
No 219
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=56.14 E-value=29 Score=30.86 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=50.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhC-------------C---------------CceEEEEEcCcchHHHHH---HHHh
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTL-------------P---------------DVKSVLLVGGVEVKADVK---KIEE 49 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~-------------~---------------~~~v~~~~~~~~~~~~~~---~l~~ 49 (230)
.+||++||+.-+..+...+.+....+ . ...+...+|+.+..++.. .+.+
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 37999999999999888887643210 0 123778888877665543 3335
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEa 85 (230)
+..+|+|+|.- +. ..+++..+.+ |||..
T Consensus 319 g~~~vlvaT~~-----l~--~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 319 GIIKAVVATPT-----LS--AGINTPAFRV-IIRDI 346 (720)
T ss_dssp TSSCEEEECST-----TG--GGCCCCBSEE-EECCS
T ss_pred CCCeEEEECcH-----hh--ccCCCCceEE-EEcCC
Confidence 67899999973 22 3566777665 55533
No 220
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=56.04 E-value=5.4 Score=27.14 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=27.8
Q ss_pred CCeEEEEcCchhH---------HHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 187 SKKIIIYFMTCAC---------VDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 187 ~~~~lIF~~t~~~---------~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+++++||++-.. +..++..|... |+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~----G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE----GKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHT----TCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHc----CCcEEEEccCHH
Confidence 4689999998655 34577778777 889999988864
No 221
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=55.98 E-value=22 Score=26.49 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=31.7
Q ss_pred HHHHHHhCC-CCeEEEEcCchh-HHHHHHHHhhhhhccCCce-EEeccCC
Q 026925 178 LVDLLIKNK-SKKIIIYFMTCA-CVDYWGVVLPRLAVLKSLS-LIPLHGK 224 (230)
Q Consensus 178 l~~ll~~~~-~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~~-~~~lh~~ 224 (230)
+...+...+ .+++++||++-. .+.+++..|. . |++ +..+.||
T Consensus 51 ~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~----G~~~v~~l~GG 95 (230)
T 2eg4_A 51 LTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-L----GGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-H----TTCCEEEECSS
T ss_pred HHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-c----CCceEEEeCCC
Confidence 334444332 578999999877 8899999999 7 885 8888877
No 222
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.87 E-value=12 Score=27.51 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=21.7
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
+-.++|+||+|.+... ....+...+...+....+++.|
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 4468999999986432 2334444444444444445443
No 223
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=55.52 E-value=22 Score=30.20 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEE
Q 026925 175 PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLI 219 (230)
Q Consensus 175 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~ 219 (230)
...+...++.. +.++++.|.|...++++...|.+. |+++.
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~----~i~~~ 410 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARI----KIAPQ 410 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGG----TCCCE
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHc----CCCce
Confidence 35566666443 368999999999999999999987 66543
No 224
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=55.42 E-value=6.6 Score=30.55 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHHh---CCCCeEEEEcCchh-HHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 178 LVDLLIK---NKSKKIIIYFMTCA-CVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 178 l~~ll~~---~~~~~~lIF~~t~~-~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+...+.. .+.+++++||++-. .+.+++..|... |+ ++..+.||+.
T Consensus 67 ~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~----G~~~v~~l~GG~~ 116 (285)
T 1uar_A 67 FAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYN----GHKDVRLMNGGRQ 116 (285)
T ss_dssp HHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHT----TCSCEEEETTHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc----CCCCeEEecCCHH
Confidence 4444443 35678999999866 688899999888 88 5888888753
No 225
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=55.18 E-value=15 Score=31.97 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.2
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
.+.+++||||++.+- ...+..+++.++...+++++.-
T Consensus 278 ~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 278 APYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp CSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred ccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 467899999999653 3456667888887777777643
No 226
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=55.11 E-value=26 Score=24.59 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 174 KPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 174 k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+....++|+++. .+.+++|.|.+.+.++.|-..|-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 556677777754 6789999999999999999999875
No 227
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=54.56 E-value=12 Score=29.28 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=35.3
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+...+.. ...+++++||.+=.++...+..|... |++ +..+.||+.
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~----G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLC----GKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHT----TCCCCEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc----CCCCceeeCCcHH
Confidence 344445542 35679999999988888899999887 885 788887753
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=54.45 E-value=47 Score=22.46 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=22.2
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeec
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt 116 (230)
-..+++||+|.+.... ...+.+++... +.+..+++.|..
T Consensus 76 ~~~l~lDei~~l~~~~-q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNI-QTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTTCCHHH-HHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHHCCHHH-HHHHHHHHHhCCCCCEEEEEecCC
Confidence 3689999999875432 33333444332 344566665543
No 229
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=54.42 E-value=12 Score=32.25 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccC-CCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHG-KMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~-~~~ 226 (230)
+.++++++|.+-.++...+..|... |+++..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~----G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQM----GWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHT----TCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHc----CCeEEEecCCChH
Confidence 4689999999988899999999988 999999999 874
No 230
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=54.18 E-value=17 Score=27.56 Aligned_cols=144 Identities=10% Similarity=0.130 Sum_probs=67.6
Q ss_pred cChHHHHHHhhCCcccCCcccEEEEeccccccc---cccHHHHH-HHHHhCCCCCcEEEE-eecC--chHHHHHHHhccC
Q 026925 58 TPGRLYDIMERMDVLDFRNLEILVLDEADRLLD---MGFQKQIS-YIISRLPKLRRTGLF-SATQ--TEAVEELSKAGLR 130 (230)
Q Consensus 58 TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~---~~~~~~~~-~i~~~l~~~~q~i~~-SAt~--~~~~~~~~~~~~~ 130 (230)
||..+.+.+.. ..++++++.++-+||-= +-. .++...++ .+++..+...+++-+ .... ...........-.
T Consensus 48 tp~~~y~~L~~-~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ye~~i~~ 125 (233)
T 3nwp_A 48 TPLKLFQLLSM-KSIDWSDVYITLADERW-VEADADASNERLVREHLLQNRASNAKFRGLKNMFSTAEAGADMAAESLSN 125 (233)
T ss_dssp TTHHHHHHHHH-CCSCGGGEEEEESEEES-SCTTSTTCHHHHHHHHTSSGGGGGSEECCSCCSSSSHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHh-cCCChhHeEEEeCeecc-cCCCChHHHHHHHHHHhhccCCccceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 66677777666 67899999999999943 321 12333333 333444322333321 1111 1222222222211
Q ss_pred C--Ce-EEEEeccCcccccccchhcc---ccCCCCccceEEEEEcC----CCCcHHHHHHHHHhCCCCeEEEEcCchhHH
Q 026925 131 N--PV-RVEVRAESKSHHVSASSQQL---ASSKTPLGLHLEYLECE----PDEKPSQLVDLLIKNKSKKIIIYFMTCACV 200 (230)
Q Consensus 131 ~--~~-~i~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~ 200 (230)
. +. .+..+- +..++...-..+. .+...... .++... +..++..-...|.+ .+++++.+.-...+
T Consensus 126 ~~~~~Dl~lLG~-G~dGHias~fPg~~~L~~~~~~~~---~~~~~~~~~~P~~riTlt~~~I~~--A~~i~ll~~G~~Ka 199 (233)
T 3nwp_A 126 FPRPFDVVVLGM-GNDGHTCSWFPCSAELENALTTQA---LCVATNPTTAPHGRITLSKSAILN--SRQIYLHLVGEQKL 199 (233)
T ss_dssp SCSSBSEEEECC-CTTSCBTTBCTTCTTHHHHHHCCS---SEEEECCSSSSSCEEEECHHHHHS--BSCEEEEEESHHHH
T ss_pred cCCCCCEEEEcc-CCCCCeeecCCCCchhhhhcccCc---eEEECCCCCCCCceEECCHHHHHh--hCeEEEEEECHHHH
Confidence 1 11 222222 2222222211110 00000011 233222 23455555555543 45788888889999
Q ss_pred HHHHHHhhh
Q 026925 201 DYWGVVLPR 209 (230)
Q Consensus 201 ~~l~~~L~~ 209 (230)
+-+.+.+..
T Consensus 200 ~av~~~l~g 208 (233)
T 3nwp_A 200 SVYRQALES 208 (233)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999998864
No 231
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.01 E-value=16 Score=26.88 Aligned_cols=41 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccC----CceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLK----SLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~----g~~~~~lh~~~~ 226 (230)
.+.+++|.|+|++-|++++..+.+..... +.++..++|+.+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTD 115 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCC
Confidence 35689999999999999999887764222 577888888764
No 232
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=53.93 E-value=9.2 Score=32.87 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |+++..+.||+.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~----G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNN----GYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHT----TCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHc----CCCEEEEcChHH
Confidence 4579999999999999999999988 999999988864
No 233
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=53.38 E-value=63 Score=23.57 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=38.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH-HHHHHHHhcCCcEEEEcChHHHHHHhh
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK-ADVKKIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
.++++|...|.....+.+... +..+....++.+.. .....+ ..++||+|+.-+. ..+++.
T Consensus 7 I~~iapy~~l~~~~~~i~~e~-----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 7 IALISQNENLLNLFPKLALEK-----NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred EEEEEccHHHHHHHHHHHhhh-----CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 478999999998766666654 33555556654422 333344 6789999986655 455554
No 234
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=53.08 E-value=36 Score=28.29 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCCC
Q 026925 171 PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMKQ 227 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~~ 227 (230)
...|.......+... +.++||.|+++.-+.+++..|.+. |.+ +..+||+...
T Consensus 118 GsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 118 GSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE 170 (472)
T ss_dssp TSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC
Confidence 345765554444443 579999999999999999999995 999 9999998764
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.26 E-value=14 Score=29.33 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=25.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+.+.+++||+|.+... ....+.+++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34579999999988543 2455566666666555566544
No 236
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=51.94 E-value=22 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCCeEEEEcCchhHHHH-HHHHhhhhhccCCceEEeccCCCCCC
Q 026925 186 KSKKIIIYFMTCACVDY-WGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~-l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+++|.|+++.-+++ +...+.... ..++++..++|+.+..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFL-KKWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHH-TTTSCEEECCC---CC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHh-ccCceEEEEeCCcccc
Confidence 36799999999999888 666666553 3367899999887643
No 237
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=51.86 E-value=5.6 Score=28.10 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=11.3
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3689999999986
No 238
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=51.50 E-value=35 Score=25.62 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=31.6
Q ss_pred cEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 53 ~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-+.+...+.+.+.. ...-.+.+++||||++.+ +....+.+..+.+. ...++++.
T Consensus 68 ~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l-~~~~ve~l~~L~~~---gi~Vil~G 123 (223)
T 2b8t_A 68 SVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFF-DDRICEVANILAEN---GFVVIISG 123 (223)
T ss_dssp CEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGS-CTHHHHHHHHHHHT---TCEEEEEC
T ss_pred ccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccC-cHHHHHHHHHHHhC---CCeEEEEe
Confidence 3445666666666654 122345789999999964 33334444444332 45555543
No 239
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.86 E-value=25 Score=27.93 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=26.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
...+.+|+||+|.+... ....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3455666677666666666543
No 240
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=49.94 E-value=40 Score=29.67 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=34.6
Q ss_pred CeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 188 KKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 188 ~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++||.++|+.-+...+..+.+.....|+++..++|+.+..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 102 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAEN 102 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccc
Confidence 68999999999999999998887534488999999998653
No 241
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=49.86 E-value=13 Score=29.61 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=22.3
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-+.+||||+|.|.... ...+...+..-+...-+++.+
T Consensus 107 ~~~kvviIdead~l~~~a-~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp SSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEEEE
T ss_pred CCcEEEEECchhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 567899999999885433 233333343333334444443
No 242
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=49.74 E-value=15 Score=28.26 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.7
Q ss_pred cEEEEecccccc
Q 026925 78 EILVLDEADRLL 89 (230)
Q Consensus 78 ~~lVvDEad~l~ 89 (230)
.++++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 589999999985
No 243
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=49.65 E-value=21 Score=27.27 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=12.5
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
..-.++++||+|.+.
T Consensus 123 ~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 123 SQLSCVVVDDIERLL 137 (272)
T ss_dssp SSEEEEEECCHHHHT
T ss_pred cCCcEEEEEChhhhh
Confidence 446799999999985
No 244
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=49.05 E-value=28 Score=24.28 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.2
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
-..+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 116 NVILFIDELHTMV 128 (195)
T ss_dssp TEEEEEETGGGGT
T ss_pred CeEEEEeCHHHHh
Confidence 4589999999986
No 245
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=48.43 E-value=10 Score=29.65 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=29.0
Q ss_pred CCCeEEEEcCc--h-hHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMT--C-ACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t--~-~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+..+++|||.+ - ..+.+++..|... |+ ++..+.||+.
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~----G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVF----GHRTVSVLNGGFR 131 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHT----TCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHc----CCCcEEEcCCCHH
Confidence 55789999998 3 3477888888888 88 5888888763
No 246
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=48.35 E-value=18 Score=33.45 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=33.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.++||.|+++.-+..++..+.+.....|+++..+||+.+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~ 337 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 337 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchh
Confidence 678999999999999999998887544589999999998654
No 247
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=48.08 E-value=35 Score=25.77 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=38.1
Q ss_pred EEEeCChh-hHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC---CcccCCccc
Q 026925 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNLE 78 (230)
Q Consensus 3 lil~Pt~e-La~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~---~~~~~~~l~ 78 (230)
+++.++.+ ++....+.+.+....- +--+..+.||.. |..+.+.+... +.++++++.
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~-~~~~l~lsgGst-------------------p~~~~~~L~~~~~~~~~~w~~v~ 63 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQG-QPVHISLSGGST-------------------PKMLFKLLASQPYANDIQWKNLH 63 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTS-SCEEEEECCSHH-------------------HHHHHHHHTSTTHHHHSCGGGEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CCEEEEECCCcc-------------------HHHHHHHHHhhhhccCCChhHeE
Confidence 56677754 7777777776665431 233445555543 33444444321 237889999
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++-+||-=
T Consensus 64 ~f~~DEr~ 71 (238)
T 1y89_A 64 FWWGDERC 71 (238)
T ss_dssp EEESEEES
T ss_pred EEeceecC
Confidence 99999964
No 248
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=48.03 E-value=12 Score=32.43 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=32.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |+++..+.||+.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~----G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEK----GYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT----TCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc----CCcEEEEcchHH
Confidence 4578999999999999999999988 999888888763
No 249
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=47.95 E-value=30 Score=31.73 Aligned_cols=53 Identities=8% Similarity=-0.175 Sum_probs=41.6
Q ss_pred HHHHHHHH-HhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 175 PSQLVDLL-IKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 175 ~~~l~~ll-~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....+.++ ....+.+++|.|+|++-|.+.+..+.......|+++.++.||++.
T Consensus 102 laf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~ 155 (853)
T 2fsf_A 102 LTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPA 155 (853)
T ss_dssp HHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 34555554 345667899999999999988888877765569999999999874
No 250
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=47.28 E-value=25 Score=26.75 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+.++||.++|++-|++.+..+.+.....+..+..++|+..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 165 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSN 165 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCC
Confidence 45689999999999999999998875555778888888765
No 251
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.74 E-value=12 Score=29.12 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=24.5
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
+-..+|+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999885432 334455555555556666654
No 252
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.48 E-value=50 Score=20.41 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHH--hCCCCeEEEEcC--chhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 177 QLVDLLI--KNKSKKIIIYFM--TCACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 177 ~l~~ll~--~~~~~~~lIF~~--t~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
-+.++++ +..++|.+||+| ++.++.+.++.-.+. |..--++.+
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvnefqneakke----gvsydvlks 85 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKE----GVSYDVLKS 85 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHH----TCEEEEEEC
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhc----Ccchhhhcc
Confidence 3455555 346689999999 688888888887776 776655544
No 253
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=45.09 E-value=38 Score=30.79 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=36.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH-HHHhcCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK-KIEEEGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~~Iiv~TP 59 (230)
+||.+.|++-+..+.+.+.+. ++....++|+....+... .-..++..|+|+|.
T Consensus 477 VLVFt~S~e~sE~Ls~~L~~~-----Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 477 VLVGTTSIEKSELLSSMLKKK-----GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 799999999999888877764 677788888733222211 11123567999997
No 254
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=44.90 E-value=29 Score=30.74 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=49.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-------------------------CceEEEEEcCcchHHHHHH---HHhcCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-------------------------DVKSVLLVGGVEVKADVKK---IEEEGA 52 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-------------------------~~~v~~~~~~~~~~~~~~~---l~~~~~ 52 (230)
.+||++||+.-+..+...+......+. +..+...+|+.+..++... +.++..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 379999999999998888876532100 1235667888776554433 334678
Q ss_pred cEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 53 NLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 53 ~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+|+|.- +. ..+++..+.++|
T Consensus 324 ~vlvaT~~-----l~--~Gidip~~~~VI 345 (702)
T 2p6r_A 324 KVVVATPT-----LA--AGVNLPARRVIV 345 (702)
T ss_dssp CEEEECST-----TT--SSSCCCBSEEEE
T ss_pred eEEEECcH-----Hh--ccCCCCceEEEE
Confidence 99999983 22 467777776644
No 255
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=44.81 E-value=11 Score=29.90 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=35.4
Q ss_pred HHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhh-hhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPR-LAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~-~~~~~g~~-~~~lh~~~~ 226 (230)
+.+...+... +.+++++||.+=.++...+..|.+ . |++ +..+.||+.
T Consensus 247 ~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~----G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 247 EELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLL----GKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTS----CCSSCEECTTHHH
T ss_pred HHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHc----CCCCeeEeCCcHH
Confidence 3455555333 557999999999999999999986 6 885 888888753
No 256
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=44.58 E-value=36 Score=26.60 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=39.0
Q ss_pred CCCcH-HHHHHHHHhC----CCCeEEEEcCchhHHHHHHHHhhhhhcc-CCceEEeccCCCCC
Q 026925 171 PDEKP-SQLVDLLIKN----KSKKIIIYFMTCACVDYWGVVLPRLAVL-KSLSLIPLHGKMKQ 227 (230)
Q Consensus 171 ~~~k~-~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~~~~-~g~~~~~lh~~~~~ 227 (230)
...|. .+++.++... ...++||.++|++-|.+++..+...... .+..+...+|+...
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCC
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccH
Confidence 34565 3455666532 3447999999999999998888776321 35777888777654
No 257
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=44.46 E-value=14 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=26.8
Q ss_pred CCcccEEEEeccccc--cccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 74 FRNLEILVLDEADRL--LDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 74 ~~~l~~lVvDEad~l--~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
..+.+.+|+||+..+ .+..+.+.+..+++.. .-+++-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 466789999998887 4455777777776632 2244435564
No 258
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=44.26 E-value=18 Score=29.56 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=28.6
Q ss_pred CCCeEEEEc-Cch-hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYF-MTC-ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~-~t~-~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++||| .+- ..+.+++..|+.. |+++..+.||+.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~----G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSL----GADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHH----TCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc----CCeEEEeCCCHH
Confidence 567899999 443 3445788888888 889999999874
No 259
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=43.31 E-value=22 Score=28.34 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=23.6
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-..+||||+|.+.... ...+...+...+....+++.+
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 445799999999875432 344445555555455455543
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=43.22 E-value=28 Score=23.68 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=22.5
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
..+++||+|.+... ....+.+.+...+.+.++++.|
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t 113 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIG 113 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEE
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEEC
Confidence 57999999987543 2344455555555566666543
No 261
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=42.78 E-value=20 Score=26.83 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
.+.++||.++|++-|.+++..+.+.....|+++..++|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKA 135 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecC
Confidence 445899999999999999999988754557788877765
No 262
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=42.11 E-value=36 Score=28.45 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHhC-CCC---eEEEEcCchhHHHHHHHHhhhh
Q 026925 173 EKPSQLVDLLIKN-KSK---KIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 173 ~k~~~l~~ll~~~-~~~---~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+-...+...+... ... .+.|.|.|...+..+...|.+.
T Consensus 234 ~~~~~i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~~ 275 (459)
T 3upu_A 234 ALRDFMVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKK 275 (459)
T ss_dssp SHHHHHHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHHH
Confidence 3445555555422 223 7999999999999999999875
No 263
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=41.73 E-value=25 Score=27.60 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=21.9
Q ss_pred cEEEEeccccccc------cccHHHHHHHHHhCCCCCcEEEE
Q 026925 78 EILVLDEADRLLD------MGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 78 ~~lVvDEad~l~~------~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
-.+|+||+|.+.. ..+...+..+.... .+..+++.
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~ 170 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILT 170 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEE
Confidence 4789999999875 23455566665554 24445543
No 264
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=41.66 E-value=17 Score=28.58 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=34.1
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKM 225 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~ 225 (230)
+.+...+.. ...+++++||.+=.++...+..|... |+ ++..+-||+
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~----G~~~v~~~~Gg~ 289 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLC----GKPDVPIYDGSW 289 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTT----TCCCCCEESSHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHc----CCCCeeEeCCcH
Confidence 445555553 24578999999988888888888877 88 577777765
No 265
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=41.59 E-value=20 Score=29.77 Aligned_cols=45 Identities=7% Similarity=0.006 Sum_probs=35.0
Q ss_pred HHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCC
Q 026925 177 QLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKM 225 (230)
Q Consensus 177 ~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~ 225 (230)
.+...+.. .+.+++++||.+=.++...+..|... |+ ++..+.||+
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~----G~~~v~~~~GG~ 393 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAM----GWKNVSVYDGGW 393 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHT----TCSSEEEESSHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHc----CCCCcceeCccH
Confidence 45555542 25679999999999999999999888 98 588888775
No 266
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=41.56 E-value=96 Score=23.04 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=38.5
Q ss_pred EEEeCChh-hHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 3 lil~Pt~e-La~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++.++.+ |+....+.+.+....- +- +..+.+|. ||..+.+.+.. ..++++++.++-
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~~-~~-~i~ls~G~-------------------T~~~~~~~L~~-~~~~~~~v~v~~ 61 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITFG-AK-TLGLATGS-------------------TPLELYKEIRE-SHLDFSDMVSIN 61 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT-CC-EEEECCSS-------------------TTHHHHHHHHT-SCCCCTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CC-EEEEcCCC-------------------CHHHHHHHHHh-cCCChhheEEEe
Confidence 45666654 6666666666665532 22 44455543 56666666654 557788999999
Q ss_pred Eecc
Q 026925 82 LDEA 85 (230)
Q Consensus 82 vDEa 85 (230)
+||-
T Consensus 62 ldEr 65 (234)
T 2ri0_A 62 LDEY 65 (234)
T ss_dssp SEEE
T ss_pred Ceee
Confidence 9983
No 267
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=41.21 E-value=21 Score=28.50 Aligned_cols=28 Identities=32% Similarity=0.186 Sum_probs=18.6
Q ss_pred ccEEEEeccccccccc-cHHHHHHHHHhC
Q 026925 77 LEILVLDEADRLLDMG-FQKQISYIISRL 104 (230)
Q Consensus 77 l~~lVvDEad~l~~~~-~~~~~~~i~~~l 104 (230)
-..+++||+|.+.... ....+..+++..
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999986542 345555555544
No 268
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=40.90 E-value=20 Score=26.51 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=27.3
Q ss_pred CCCeE--EEEcC-chhHHHHHHHHhhhh------hccCCc-eEEeccCCCC
Q 026925 186 KSKKI--IIYFM-TCACVDYWGVVLPRL------AVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~--lIF~~-t~~~~~~l~~~L~~~------~~~~g~-~~~~lh~~~~ 226 (230)
+.+++ ++||. +-..+...+..|.+. +...|+ ++..+.||+.
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~ 158 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYK 158 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHH
Confidence 34566 67899 777777777777641 001288 6888888764
No 269
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=40.89 E-value=10 Score=30.57 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=15.8
Q ss_pred ccEEEEeccccccccccHHHHHHHHH
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIIS 102 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~ 102 (230)
-..+++||+|.+ +......+.+++.
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRLGQ 150 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHHTT
T ss_pred eEEEEEECcccc-chHHHHHHHHHHH
Confidence 458999999988 3333444444443
No 270
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=40.12 E-value=18 Score=31.14 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=31.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||++-..+.+.+..|... |+ ++..+.||+.
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~----G~~~V~~L~GG~~ 99 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDL----GYSDVALLDGGLS 99 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHT----TCSSEEEETTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc----CCCceEEeCCCHH
Confidence 5679999999988999999999988 99 5888888763
No 271
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=39.48 E-value=21 Score=32.41 Aligned_cols=42 Identities=7% Similarity=-0.176 Sum_probs=35.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
.+.+++|.++|+.-|++.+..+.+.+...|+++..+||+++.
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~ 457 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTP 457 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCH
Confidence 356899999999999999998887754458999999999864
No 272
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=38.77 E-value=33 Score=31.89 Aligned_cols=52 Identities=8% Similarity=-0.125 Sum_probs=41.1
Q ss_pred HHHHHH-HHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 176 SQLVDL-LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 176 ~~l~~l-l~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...+.+ +....+..++|.++|+.-|.+.+..+...+..-|+++.++.||++.
T Consensus 108 vf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~ 160 (997)
T 2ipc_A 108 VATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTP 160 (997)
T ss_dssp HHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCH
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 344444 3455667899999999999998888877766669999999999874
No 273
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=38.70 E-value=90 Score=23.95 Aligned_cols=72 Identities=8% Similarity=0.150 Sum_probs=47.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc-CCc-EEEEcChHHHHHHhhCCcccCCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE-GAN-LLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~-~~~-Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
+||.+.++..+..+...+..-. ++.+..++|+.+..+... .+.++ .+. ++++|-.. . ..+++..
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~------g-~Glnl~~ 183 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG------G-FGINLTS 183 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT------C-CCCCCTT
T ss_pred EEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhh------c-CCcCccc
Confidence 6899999999888888877632 456777888877554443 33233 455 45555431 2 5678888
Q ss_pred ccEEEEec
Q 026925 77 LEILVLDE 84 (230)
Q Consensus 77 l~~lVvDE 84 (230)
.+++|+=+
T Consensus 184 a~~VI~~d 191 (271)
T 1z5z_A 184 ANRVIHFD 191 (271)
T ss_dssp CSEEEECS
T ss_pred CCEEEEEC
Confidence 88887533
No 274
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=38.59 E-value=33 Score=31.70 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=40.7
Q ss_pred HHHHHH-HHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 176 SQLVDL-LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 176 ~~l~~l-l~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
...+.+ +....++.++|.++|+.-|.+.+..+...+..-|+++.++.||++.
T Consensus 140 a~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~ 192 (922)
T 1nkt_A 140 TCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTP 192 (922)
T ss_dssp HTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH
T ss_pred HHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCH
Confidence 444444 3456677899999999999888888777655569999999999875
No 275
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=38.58 E-value=20 Score=28.26 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=32.3
Q ss_pred HHHHHHHh---CCCCeEEEEcCch---hHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 177 QLVDLLIK---NKSKKIIIYFMTC---ACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~---~~~~~~lIF~~t~---~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+...+.. ....+++|||.+. ..+.+++..|+.. |++ +..+.||+.
T Consensus 94 ~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~----G~~~V~~L~GG~~ 146 (302)
T 3olh_A 94 HFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF----GHHAVSLLDGGLR 146 (302)
T ss_dssp HHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHT----TCCCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHc----CCCcEEECCCCHH
Confidence 34444443 3567899999752 3588888889888 885 888888753
No 276
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=38.53 E-value=24 Score=28.86 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.0
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.++|+||...=++......+..+++.+.+..|+++.|
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~it 353 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVT 353 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7999999998888888888888888776566776654
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=37.99 E-value=20 Score=31.54 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH----------------------------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---------------------------------- 47 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---------------------------------- 47 (230)
+|+.+||..-|.++...+... +.++.-+.......+.....
T Consensus 236 ILv~a~TN~AvD~i~erL~~~-----~~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (646)
T 4b3f_X 236 VLCCAPSNIAVDNLVERLALC-----KQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQD 310 (646)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC---
T ss_pred EEEEcCchHHHHHHHHHHHhc-----CCceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred ----------------------------HhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecc
Q 026925 48 ----------------------------EEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (230)
Q Consensus 48 ----------------------------~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEa 85 (230)
.-..++++++|-......-.. ..+.-..++++|||||
T Consensus 311 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~-~~~~~~~Fd~vIIDEA 375 (646)
T 4b3f_X 311 KREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPL-KLLPESYFDVVVIDEC 375 (646)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGG-GGSCTTCCSEEEETTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHH-HhhhhccCCEEEEcCc
No 278
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.96 E-value=40 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.9
Q ss_pred Cc-ccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RN-LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~-l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+ ..++++||...=++......+..++..+....|+++.|
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~t 343 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEE
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEE
Confidence 44 67999999999898888888888887776556755443
No 279
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=37.89 E-value=21 Score=29.98 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKM 225 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~ 225 (230)
+.+++++||.+-.++...+..|... |++ +..+.||+
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~----G~~~v~~~~Gg~ 462 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAH----GVGDVRNMVGGY 462 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHH----TCSSEEEETTHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc----CCCCEEEecChH
Confidence 5578999999999999999999988 985 88888765
No 280
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=37.86 E-value=37 Score=26.89 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=27.7
Q ss_pred CCcccEEEEecccc-ccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 74 FRNLEILVLDEADR-LLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 74 ~~~l~~lVvDEad~-l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+.+-+.+||||+|. +-. +....+...+...|....+++.+.+.
T Consensus 74 f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 46678999999997 543 33455556666655555566554443
No 281
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=37.70 E-value=53 Score=24.86 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcC-----chhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFM-----TCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~-----t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
+|+.-.+++......++++||+| |.++..++.++.... +.++.++=..
T Consensus 147 eki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~----~i~vLlIE~~ 199 (229)
T 3qhq_A 147 EKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLM----QKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHH----CSCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHh----CCeEEEEecc
Confidence 34555556666778899999999 588999999998887 8887766544
No 282
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=37.22 E-value=55 Score=24.57 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhCCCCeEEEEcC-----chhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 174 KPSQLVDLLIKNKSKKIIIYFM-----TCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 174 k~~~l~~ll~~~~~~~~lIF~~-----t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
|+.-..++......++++||+| |.++..++.++.... +.++.++-.+
T Consensus 148 ~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~----~i~vL~IE~~ 199 (220)
T 3s5u_A 148 KVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLN----NVDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHh----CCeEEEEecc
Confidence 4455555566778899999999 588999999998877 8888777554
No 283
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=36.85 E-value=1e+02 Score=24.84 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=34.2
Q ss_pred ceEEEEEcCc---chHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEec
Q 026925 29 VKSVLLVGGV---EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (230)
Q Consensus 29 ~~v~~~~~~~---~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDE 84 (230)
+.+..+.+.. ...+..+.+...++|+||++.-.+.+.+.. -.-...++.++++|.
T Consensus 61 ~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~-vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 61 VETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK-VAKKFPDVKFEHATG 118 (356)
T ss_dssp EEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH-HHTTCTTSEEEEESC
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHCCCCEEEEEec
Confidence 6665554432 233445566678999999998776666543 112234677888875
No 284
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=36.49 E-value=87 Score=20.31 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=26.7
Q ss_pred eEEEeCChhhHHHHHH-HHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEEcChH
Q 026925 2 GMIISPTRELSSQIYH-VAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~-~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~ 61 (230)
++++|++--=..++.. .+++.+... ++. +..-..+.. +.... ...+|++++||.-
T Consensus 21 IlvvC~sG~gTS~m~~~kl~~~~~~~-gi~~~~i~~~~~~---~~~~~-~~~~DlIi~t~~l 77 (110)
T 3czc_A 21 VLTACGNGMGSSMVIKMKVENALRQL-GVSDIESASCSVG---EAKGL-ASNYDIVVASNHL 77 (110)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEECHH---HHHHH-GGGCSEEEEETTT
T ss_pred EEEECCCcHHHHHHHHHHHHHHHHHc-CCCeEEEEEeeHH---HHhhc-cCCCcEEEECCch
Confidence 4677776433333333 555544433 444 322222211 11122 2568999999963
No 285
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=36.45 E-value=23 Score=28.74 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccEEEEeccccccc
Q 026925 77 LEILVLDEADRLLD 90 (230)
Q Consensus 77 l~~lVvDEad~l~~ 90 (230)
--++|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 34899999999865
No 286
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.32 E-value=45 Score=26.07 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=22.9
Q ss_pred cEEEEeccccccc---cccHHHHHHHHHhCCCCCcEEEE
Q 026925 78 EILVLDEADRLLD---MGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 78 ~~lVvDEad~l~~---~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
-.+|+||+|.+.. ..+...+.++.+..+ ...+++.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~ 176 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMS 176 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEE
Confidence 3799999999864 356677777666543 3444443
No 287
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=36.22 E-value=19 Score=27.92 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.0
Q ss_pred CcccEEEEeccccccc
Q 026925 75 RNLEILVLDEADRLLD 90 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~ 90 (230)
.+-+.+|+||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 5578999999998754
No 288
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=36.15 E-value=24 Score=28.84 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=29.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKM 225 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~ 225 (230)
.+++++||.+=.++...+..|... |++ +..+.||+
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~----G~~~v~~~~GG~ 281 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHL----GLGHPYLYCGSW 281 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHT----TSCCCEECSSHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHc----CCCCeeEeCChH
Confidence 678999999988888888888877 985 88888875
No 289
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.75 E-value=1.6e+02 Score=23.01 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..+..+|... .....|||.+...|..+...|++.
T Consensus 194 ~~~~~~L~~~-~~~~aI~~~~d~~a~g~~~al~~~ 227 (350)
T 3h75_A 194 RQAQQLLKRY-PKTQLVWSANDEMALGAMQAAREL 227 (350)
T ss_dssp HHHHHHHHHC-TTEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCcCEEEECChHHHHHHHHHHHHc
Confidence 4556666655 468899999999999999999988
No 290
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=35.55 E-value=53 Score=21.54 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=9.4
Q ss_pred cCCcEEEEcCh
Q 026925 50 EGANLLIGTPG 60 (230)
Q Consensus 50 ~~~~Iiv~TP~ 60 (230)
..+|++++||.
T Consensus 68 ~~~DlIist~~ 78 (113)
T 1tvm_A 68 DGVHLICTTAR 78 (113)
T ss_dssp TSCSEEEESSC
T ss_pred CCCCEEEECCc
Confidence 46899999995
No 291
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=35.53 E-value=61 Score=24.76 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHH---hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 172 DEKPSQLVDLLI---KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 172 ~~k~~~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..|......++. ..+..++||.|+++.-+++.+..+.+.....+..+..++++.+.
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (282)
T 1rif_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASK 197 (282)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSS
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcc
Confidence 456544433332 12345999999999999999999988732234467777777654
No 292
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.36 E-value=65 Score=30.31 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.7
Q ss_pred CCcHHHHHHHHH--hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc----eEEeccCCCCCC
Q 026925 172 DEKPSQLVDLLI--KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL----SLIPLHGKMKQV 228 (230)
Q Consensus 172 ~~k~~~l~~ll~--~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~----~~~~lh~~~~~~ 228 (230)
..|....+.++. ...+.++||.++|++-|.+++..+.......|. ++..+||+.+..
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~ 144 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKR 144 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSH
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChh
Confidence 345544444443 235579999999999999999999877544467 899999998763
No 293
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=35.08 E-value=16 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=22.1
Q ss_pred CCeEEEEcCch-hHH----HHHHHHhhhhhccCC---ceEEeccCCCC
Q 026925 187 SKKIIIYFMTC-ACV----DYWGVVLPRLAVLKS---LSLIPLHGKMK 226 (230)
Q Consensus 187 ~~~~lIF~~t~-~~~----~~l~~~L~~~~~~~g---~~~~~lh~~~~ 226 (230)
.++++++|.+- .+. ..+...|... | .++..+.||+.
T Consensus 104 ~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~----G~~~~~V~~L~GG~~ 147 (169)
T 3f4a_A 104 ALNVIFHCMLSQQRGPSAAMLLLRSLDTA----ELSRCRLWVLRGGFS 147 (169)
T ss_dssp CEEEEEECSSSSSHHHHHHHHHHHTCCHH----HHTTEEEEEETTHHH
T ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHHHHc----CCCCCCEEEECCCHH
Confidence 36899999862 333 3334444433 4 57888888763
No 294
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=34.96 E-value=49 Score=26.00 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.9
Q ss_pred ccEEEEeccccccc
Q 026925 77 LEILVLDEADRLLD 90 (230)
Q Consensus 77 l~~lVvDEad~l~~ 90 (230)
-.++++||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 36999999999875
No 295
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=34.62 E-value=39 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=25.6
Q ss_pred cEEEEeccccccccc----------cHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 78 EILVLDEADRLLDMG----------FQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 78 ~~lVvDEad~l~~~~----------~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
.++++||+|.+.... ....+.+.+..+.....++++.||=.
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 589999999987521 22334445555555556666666643
No 296
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=34.15 E-value=1.2e+02 Score=22.52 Aligned_cols=62 Identities=27% Similarity=0.308 Sum_probs=36.7
Q ss_pred EEEeCChh-hHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh---CCcccCCccc
Q 026925 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER---MDVLDFRNLE 78 (230)
Q Consensus 3 lil~Pt~e-La~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~---~~~~~~~~l~ 78 (230)
+++.++.+ |+....+.+.+....- +-.+..+.+|. ||..+.+.+.. ...++++++.
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~i~~~-~~~~i~lsgG~-------------------T~~~~~~~L~~~~~~~~~~~~~v~ 62 (242)
T 2bkx_A 3 VMECQTYEELSQIAARITADTIKEK-PDAVLGLATGG-------------------TPEGTYRQLIRLHQTENLSFQNIT 62 (242)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS-------------------TTHHHHHHHHHHHHHSCCCCTTCE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHC-CCeEEEECCCC-------------------CHHHHHHHHHHHhhccCCChhheE
Confidence 56677754 6676666666655432 12233444443 45555554431 1457788999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++-+||
T Consensus 63 v~~lde 68 (242)
T 2bkx_A 63 TVNLDE 68 (242)
T ss_dssp EEESEE
T ss_pred EEeCcc
Confidence 999999
No 297
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=34.15 E-value=50 Score=24.89 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=27.6
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEec
Q 026925 174 KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPL 221 (230)
Q Consensus 174 k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~l 221 (230)
++..-+..|. ..+++++.+.-...++.+...|... .+++..+
T Consensus 179 rITltl~~I~--~A~~iilla~G~~Ka~av~~~l~g~----~~Pas~l 220 (232)
T 1vl1_A 179 RVTLTFRALN--TSLYVLFLIRGKEKINRLTEILKDT----PLPAYFV 220 (232)
T ss_dssp EEEECHHHHT--TCSEEEEEEESHHHHHHHHHHHTTC----CCGGGGC
T ss_pred EEECCHHHHH--hCCEEEEEEcCHHHHHHHHHHHhCC----CCChHHh
Confidence 3444445553 4568888888899999999888642 3555444
No 298
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=33.47 E-value=74 Score=22.76 Aligned_cols=35 Identities=3% Similarity=-0.133 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCc--hhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 185 NKSKKIIIYFMT--CACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 185 ~~~~~~lIF~~t--~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
.+...+|||+++ ...+.+++..++++ |.++.++.+
T Consensus 76 ~~~D~vii~S~Sg~n~~~ie~A~~ake~----G~~vIaITs 112 (170)
T 3jx9_A 76 HAVDRVLIFTPDTERSDLLASLARYDAW----HTPYSIITL 112 (170)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHH----TCCEEEEES
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHC----CCcEEEEeC
Confidence 366799999996 45578888888888 999999988
No 299
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=33.39 E-value=22 Score=28.54 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=20.7
Q ss_pred EEEEeccccccccccHHH-HHHHHHhCCCCCcEEEEee
Q 026925 79 ILVLDEADRLLDMGFQKQ-ISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~-~~~i~~~l~~~~q~i~~SA 115 (230)
.+|+||+|.+........ +..+.+.. ....+++.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 999999999865432333 44444444 3344444433
No 300
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.86 E-value=37 Score=26.95 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.1
Q ss_pred ccEEEEecccccccc
Q 026925 77 LEILVLDEADRLLDM 91 (230)
Q Consensus 77 l~~lVvDEad~l~~~ 91 (230)
-..+|+||+|.+.+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 458999999998743
No 301
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=32.84 E-value=37 Score=26.21 Aligned_cols=37 Identities=5% Similarity=-0.039 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..++.+-+..|.+ .+++++.+.-...++-+.+.+...
T Consensus 198 ~~rITlt~~~I~~--A~~i~ll~~G~~Ka~av~~~l~g~ 234 (266)
T 3eb9_A 198 VWRVTLSPATIMQ--ARNVIVLATGAEKKWVVDGILADT 234 (266)
T ss_dssp SCEEEECHHHHHT--CSEEEEEECCGGGHHHHHHHHCSS
T ss_pred CeEEEcCHHHHHh--cCeEEEEEeCHHHHHHHHHHHhCC
Confidence 3455555555543 467888888888899998888643
No 302
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=32.73 E-value=50 Score=25.18 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
.++..-...| ...+++++.+.-...++-+.+.+..
T Consensus 185 ~riTlt~~~I--~~Ar~i~ll~~G~~Ka~av~~~l~g 219 (248)
T 3oc6_A 185 RRITLTLPAV--QNSREVWLVVSGEAKADAVAAAVGG 219 (248)
T ss_dssp CEEEECHHHH--TTEEEEEEEECSGGGHHHHHHHHHT
T ss_pred cEEEcCHHHH--HhhCeEEEEEeCHHHHHHHHHHHcC
Confidence 3444444555 2345777778888888888888764
No 303
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.66 E-value=45 Score=26.33 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=29.7
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
.+-+++++||...-++......+..++..+....++++.|
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~t 279 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4457999999999888877777777777775555665543
No 304
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=32.66 E-value=9.9 Score=16.42 Aligned_cols=9 Identities=33% Similarity=0.313 Sum_probs=6.2
Q ss_pred EEEEcCchh
Q 026925 190 IIIYFMTCA 198 (230)
Q Consensus 190 ~lIF~~t~~ 198 (230)
-|||||.+.
T Consensus 7 piiycnrrt 15 (21)
T 8tfv_A 7 PIIYCNRRT 15 (26)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEcCcc
Confidence 378888653
No 305
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=32.34 E-value=49 Score=25.26 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
.++..-+..| ...+++++.+.-...++-+.+.+..
T Consensus 187 ~riTlt~~~I--~~Ar~i~ll~~G~~Ka~av~~~l~g 221 (251)
T 3tx2_A 187 QRITLTLPAI--QRSREVWLVVSGEAKADAVAAAVGG 221 (251)
T ss_dssp CEEEECHHHH--TTSSEEEEEECSGGGHHHHHHHHTT
T ss_pred cEEEECHHHH--HhcCeEEEEEeCHHHHHHHHHHHhC
Confidence 3444445555 3456888888888999999888864
No 306
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=31.83 E-value=36 Score=23.61 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=26.0
Q ss_pred CCeE--EEEcC-chhHHHHHHHHhhhh------hccCCc-eEEeccCCCC
Q 026925 187 SKKI--IIYFM-TCACVDYWGVVLPRL------AVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 187 ~~~~--lIF~~-t~~~~~~l~~~L~~~------~~~~g~-~~~~lh~~~~ 226 (230)
.+++ ++||. +-.++...+..|.+. +..-|+ ++..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 4565 45698 777777888887642 001277 6888888763
No 307
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=30.20 E-value=48 Score=25.65 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
.++..-+..| ...+++++.+.-...++-+.+.+..
T Consensus 203 ~rITlt~~~I--~~Ar~i~ll~~G~~Ka~av~~~l~g 237 (268)
T 3ico_A 203 RRITLTLPAI--QRSREVWLLVSGPGKADAVAAAIGG 237 (268)
T ss_dssp CEEEECHHHH--TTSSEEEEEECSGGGHHHHHHHHTT
T ss_pred ceEEEechhh--hccceEEEEecCCCchHHHHHHhcC
Confidence 3455555555 3456788888888888888888864
No 308
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.10 E-value=63 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=7.8
Q ss_pred ccEEEEeccccccc
Q 026925 77 LEILVLDEADRLLD 90 (230)
Q Consensus 77 l~~lVvDEad~l~~ 90 (230)
-.++++||+|.+..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 46899999999853
No 309
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=28.36 E-value=68 Score=19.12 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=22.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+..-++|.|.+.+.++++.+.|.+.
T Consensus 46 GDDTIlvi~r~~~~a~~l~~~i~~~ 70 (71)
T 1b4b_A 46 GDDTCLIICRTPKDAKKVSNQLLSM 70 (71)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHTT
T ss_pred eCCEEEEEECCHHHHHHHHHHHHHh
Confidence 6679999999999999999998753
No 310
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=27.38 E-value=85 Score=24.11 Aligned_cols=36 Identities=8% Similarity=-0.106 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 173 EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 173 ~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.++..-+..|.+ .+++++.+.-...++-+.+.|...
T Consensus 200 ~rITltl~~I~~--A~~v~~la~G~~Ka~av~~~l~g~ 235 (267)
T 3css_A 200 WRVTLSKTVIQY--AKHVVVLAAGKDKNWVVRGVLSES 235 (267)
T ss_dssp CEEEECHHHHHH--CSEEEEEECSGGGHHHHHHHHCSS
T ss_pred ceEECCHHHHHc--CCEEEEEEeCHHHHHHHHHHHcCC
Confidence 455555555543 457888888899999999888643
No 311
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=27.38 E-value=65 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=19.3
Q ss_pred CcccEEEEeccccccccccHHHHHHHH
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYII 101 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~ 101 (230)
.+.+.+.||||+ +++.+..+.+..+.
T Consensus 100 ~~~dvV~IDEaQ-Ff~~~~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQ-FFDDEIVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGG-GSCTHHHHHHHHHH
T ss_pred cCCCEEEEechh-cCCHHHHHHHHHHH
Confidence 567899999999 55555666666665
No 312
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.08 E-value=74 Score=24.34 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=12.8
Q ss_pred cccEEEEecccccccc
Q 026925 76 NLEILVLDEADRLLDM 91 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~ 91 (230)
.-..+++||+|.+...
T Consensus 113 ~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEEETGGGTSBC
T ss_pred CCcEEEeccHHHhccc
Confidence 3468999999999753
No 313
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=26.78 E-value=89 Score=21.55 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=30.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.+.+++++||.-.-+|......+..++..+......++++..
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 121 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEC
Confidence 456799999999888888788888888877544344544433
No 314
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.48 E-value=83 Score=26.72 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=25.2
Q ss_pred CcccEEEEeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 75 RNLEILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
.+-.++++||+|.+.... ....+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 345789999999986532 334455555442 44566666653
No 315
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=26.44 E-value=19 Score=28.11 Aligned_cols=37 Identities=5% Similarity=-0.090 Sum_probs=25.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.+-+|||+|+..+++.|...|..+ |+.+.+ +.+++.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~L----gF~V~~-~~dlt~ 78 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSL----GYEVQK-FLHLSM 78 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHH----TEEEEE-EESCBH
T ss_pred cceEEEEECCchHHHHHHHHHHHHC----CCEEEE-eeCCCH
Confidence 3457788888888888888888877 887653 444443
No 316
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=26.06 E-value=68 Score=27.24 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=25.2
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
..++++|+|||++| |..+......+++.+ ..|.|+.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc--CCEEEEE
Confidence 58999999999665 433455555666655 6788864
No 317
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=25.77 E-value=44 Score=23.58 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=25.2
Q ss_pred CCCeEEE--EcC-chhHHHHHHHHhhhh------hccCCc-eEEeccCCCC
Q 026925 186 KSKKIII--YFM-TCACVDYWGVVLPRL------AVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lI--F~~-t~~~~~~l~~~L~~~------~~~~g~-~~~~lh~~~~ 226 (230)
+.++++| +|. +-..+...+..|.+. +..-|+ ++..+.||+.
T Consensus 88 ~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~ 138 (175)
T 2a2k_A 88 LDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYK 138 (175)
T ss_dssp --CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred CCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHH
Confidence 3456654 488 777777777777642 001277 6888888764
No 318
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.69 E-value=59 Score=24.46 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIG 57 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~ 57 (230)
.++++|...|.....+.+..+.... .+.+....-+.........+..+++||+|+
T Consensus 15 ii~i~~~~~L~~~~~~i~~e~~~~~-~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 15 VIWTVSVTRLFELFRDISLEFDHLA-NITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp EEEEECCHHHHHHHHHHHTTTTTTC-EEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhhCCCc-eEEEecCcHHHHHHHHHHHHhcCCCeEEEe
No 319
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=25.56 E-value=84 Score=25.13 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.2
Q ss_pred cccEEEEeccccccc
Q 026925 76 NLEILVLDEADRLLD 90 (230)
Q Consensus 76 ~l~~lVvDEad~l~~ 90 (230)
.-.+|+|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 346899999999864
No 320
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=25.19 E-value=1.6e+02 Score=24.89 Aligned_cols=48 Identities=2% Similarity=-0.056 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhh
Q 026925 163 HLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLA 211 (230)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~ 211 (230)
.+.+..+....|.-.+..+.+.. ++++||.|.+...|++++..|....
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 45667777788887777777654 4689999999999999999998763
No 321
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=24.62 E-value=34 Score=29.14 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.3
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
+++|+||.+.=++......+..++..+....++++.
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~i 454 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV 454 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEE
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 899999999999988777777777777555555554
No 322
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=24.60 E-value=62 Score=25.12 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.4
Q ss_pred ccEEEEeccccccc
Q 026925 77 LEILVLDEADRLLD 90 (230)
Q Consensus 77 l~~lVvDEad~l~~ 90 (230)
-..+++||+|.+..
T Consensus 109 p~il~iDEid~l~~ 122 (301)
T 3cf0_A 109 PCVLFFDELDSIAK 122 (301)
T ss_dssp SEEEEECSTTHHHH
T ss_pred CeEEEEEChHHHhh
Confidence 36899999998753
No 323
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=24.59 E-value=1.5e+02 Score=24.56 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=31.8
Q ss_pred HhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 183 IKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 183 ~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
......++||.|++ .-+..+...+.+. .++.++..+||+..
T Consensus 82 ~~~~~~~~LIv~P~-~l~~qw~~e~~~~--~~~~~v~~~~g~~~ 122 (500)
T 1z63_A 82 KENELTPSLVICPL-SVLKNWEEELSKF--APHLRFAVFHEDRS 122 (500)
T ss_dssp HTTCCSSEEEEECS-TTHHHHHHHHHHH--CTTSCEEECSSSTT
T ss_pred hcCCCCCEEEEccH-HHHHHHHHHHHHH--CCCceEEEEecCch
Confidence 34456799999994 5788899999887 45678888988764
No 324
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=24.49 E-value=52 Score=23.52 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.1
Q ss_pred CcccEEEEeccccc
Q 026925 75 RNLEILVLDEADRL 88 (230)
Q Consensus 75 ~~l~~lVvDEad~l 88 (230)
.+.+++|+||++..
T Consensus 114 ~~~~~lilDei~~~ 127 (202)
T 2w58_A 114 KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHSSEEEEEEECCC
T ss_pred cCCCEEEEcCCCCC
Confidence 45579999999765
No 325
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=24.49 E-value=16 Score=30.82 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+ ++..+-||+.
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHK----GYHNIINVNEGYK 461 (466)
T ss_dssp ------------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc----CCCCEEEecChHH
Confidence 4568999999999999999999888 98 6888888875
No 326
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=24.23 E-value=1e+02 Score=23.30 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=18.0
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHh
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISR 103 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~ 103 (230)
.+.+++++||+.-+. + ..++.+++..
T Consensus 89 ~~~dvViIDEaQF~~--~-v~el~~~l~~ 114 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP--D-IVEFCEAMAN 114 (234)
T ss_dssp TTCSEEEESSGGGCT--T-HHHHHHHHHH
T ss_pred ccCCEEEEEchhhhh--h-HHHHHHHHHh
Confidence 457899999999764 2 5555555555
No 327
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=23.85 E-value=36 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=23.5
Q ss_pred CCCeEEEEcCchhH-------HHH---HHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCAC-------VDY---WGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~-------~~~---l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
..++++|||.+-.. +.. +.+.+... |+++..+.||+.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~----G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDE----GCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHT----TCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHC----CCceEEEcChHH
Confidence 45789999986432 123 33344344 888888988864
No 328
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=23.63 E-value=1.9e+02 Score=21.44 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh
Q 026925 9 RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 9 ~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
-+++.++++.+++. +.+...+..+.-...+......-|+|++=..|.-+.+++.+
T Consensus 142 ~~~v~~i~~~~~~~-----~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~h 196 (212)
T 3r8r_A 142 LDLISEVKQIFDIH-----GLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKH 196 (212)
T ss_dssp HHHHHHHHHHHHHH-----TCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHc-----CCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHHHHHHcC
Confidence 46777877777775 34555566666666666664468999887777766666643
No 329
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=23.56 E-value=16 Score=25.21 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=22.1
Q ss_pred CCCeEEEEcCchhHHHHH------HHHhh--hhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYW------GVVLP--RLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l------~~~L~--~~~~~~g~-~~~~lh~~~~ 226 (230)
..++++|||++-..+... +..|. .. |+ ++..+.||+.
T Consensus 77 ~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~----G~~~v~~L~GG~~ 122 (153)
T 2vsw_A 77 CSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEK----SFNSVHLLAGGFA 122 (153)
T ss_dssp TTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHH----HCSCEEEETTHHH
T ss_pred CCCeEEEEeCCCCcccccccchHHHHHHHHHHh----CCCcEEEEeChHH
Confidence 456889999875443322 34444 33 55 5777877753
No 330
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=23.28 E-value=94 Score=19.13 Aligned_cols=35 Identities=14% Similarity=-0.026 Sum_probs=27.9
Q ss_pred HHHHHHHHHhC----------CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 175 PSQLVDLLIKN----------KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 175 ~~~l~~ll~~~----------~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
...+..+++.. +..-++|.|.+.+.++++.+.|.+
T Consensus 37 A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 37 AQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLE 81 (83)
T ss_dssp HHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHH
Confidence 55666666543 667999999999999999999875
No 331
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.05 E-value=58 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.1
Q ss_pred cccEEEEeccccc
Q 026925 76 NLEILVLDEADRL 88 (230)
Q Consensus 76 ~l~~lVvDEad~l 88 (230)
+.+.++|||++.+
T Consensus 81 ~~dvViIDEaqfl 93 (191)
T 1xx6_A 81 DTEVIAIDEVQFF 93 (191)
T ss_dssp TCSEEEECSGGGS
T ss_pred cCCEEEEECCCCC
Confidence 4789999999974
No 332
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.99 E-value=62 Score=24.36 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=17.1
Q ss_pred cccEEEEeccccccccccHHHHHHHHHh
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISR 103 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~ 103 (230)
+-.++++||+|.+... ....+.+++..
T Consensus 100 ~~~~l~lDEi~~l~~~-~q~~Ll~~l~~ 126 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-VQEKLLRVIEY 126 (265)
T ss_dssp TTSEEEEESGGGSCHH-HHHHHHHHHHH
T ss_pred CCcEEEEechHhcCHH-HHHHHHHHHHh
Confidence 3469999999987543 23444445543
No 333
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=22.83 E-value=68 Score=26.44 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=30.4
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~S 114 (230)
.+-.++++||.+.-+|......+..++..+.. ..|+++.|
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~t 394 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 394 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEEC
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 45679999999999998878877777777653 45666654
No 334
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.68 E-value=1.4e+02 Score=18.22 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=33.6
Q ss_pred cceEEEEEcCCCCcH---HHHHHHHHhCCCC--eEEEEcCchhHHHHHHHHhhhhhccCCce
Q 026925 161 GLHLEYLECEPDEKP---SQLVDLLIKNKSK--KIIIYFMTCACVDYWGVVLPRLAVLKSLS 217 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~---~~l~~ll~~~~~~--~~lIF~~t~~~~~~l~~~L~~~~~~~g~~ 217 (230)
+....+....+++-- .-+.+.+++.+.+ ++-|-..|+++|++.+..|.+-+...|++
T Consensus 16 nfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyn 77 (106)
T 1qys_A 16 NFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYN 77 (106)
T ss_dssp EEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCc
Confidence 334334443444322 3344455566555 55677889999999988776654444664
No 335
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=22.64 E-value=66 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=15.4
Q ss_pred cccEEEEeccccccccccHHHHHHH
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYI 100 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i 100 (230)
+.++++|||+.-+ +....+.+..+
T Consensus 101 ~~dvViIDEaQF~-~~~~V~~l~~l 124 (214)
T 2j9r_A 101 EMDVIAIDEVQFF-DGDIVEVVQVL 124 (214)
T ss_dssp SCCEEEECCGGGS-CTTHHHHHHHH
T ss_pred CCCEEEEECcccC-CHHHHHHHHHH
Confidence 4789999999964 33333444443
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.51 E-value=42 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.9
Q ss_pred CcccEEEEeccccccc-----cccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 75 RNLEILVLDEADRLLD-----MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~-----~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
.+.+.+++||.-..++ ......+..+++.+.....+++++....+..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4678999999988875 3455557777777755555677766655443
No 337
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=21.92 E-value=74 Score=24.63 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=7.4
Q ss_pred hhHHHHHHHHhhhh
Q 026925 197 CACVDYWGVVLPRL 210 (230)
Q Consensus 197 ~~~~~~l~~~L~~~ 210 (230)
..+++.|...|+.+
T Consensus 48 ~~D~~~L~~~f~~L 61 (271)
T 3h11_B 48 HLDAGALTTTFEEL 61 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 34555555555555
No 338
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=21.28 E-value=1.1e+02 Score=24.03 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=25.6
Q ss_pred CeEEEEcCc-----------hhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 188 KKIIIYFMT-----------CACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 188 ~~~lIF~~t-----------~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+-+|||+|. ..+|+.+...|+.+ |+.+. ++.+++.
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~L----GF~V~-~~~dlt~ 106 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL----GYSVD-VKKNLTA 106 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHT----TCEEE-EEESCCH
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHC----CCEEE-EeeCCCH
Confidence 458888887 67888888888888 88865 4444443
No 339
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=21.24 E-value=1.2e+02 Score=23.84 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=10.9
Q ss_pred cEEEEeccccccc
Q 026925 78 EILVLDEADRLLD 90 (230)
Q Consensus 78 ~~lVvDEad~l~~ 90 (230)
..++|||+|.+..
T Consensus 191 ~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 191 GVLFIDEVHMLDI 203 (368)
T ss_dssp CEEEEESGGGSBH
T ss_pred ceEEEhhccccCh
Confidence 4999999998753
No 340
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.17 E-value=79 Score=25.55 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.8
Q ss_pred cEEEEeccccccc
Q 026925 78 EILVLDEADRLLD 90 (230)
Q Consensus 78 ~~lVvDEad~l~~ 90 (230)
.+|+|||+|.+..
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 6999999999853
No 341
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.80 E-value=1.1e+02 Score=23.48 Aligned_cols=35 Identities=14% Similarity=-0.078 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 176 SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 176 ~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..+..+|...+..++-|||.+...|..+.+.+.+.
T Consensus 176 ~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~ 210 (313)
T 3m9w_A 176 KIMENALTANNNKIDAVVASNDATAGGAIQALSAQ 210 (313)
T ss_dssp HHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHc
Confidence 55667777664578899999999999999999988
No 342
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.77 E-value=69 Score=25.65 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.2
Q ss_pred cccEEEEeccccccc
Q 026925 76 NLEILVLDEADRLLD 90 (230)
Q Consensus 76 ~l~~lVvDEad~l~~ 90 (230)
.-..|++||+|.+..
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 346899999999864
No 343
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.76 E-value=1.6e+02 Score=21.33 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=28.5
Q ss_pred CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh
Q 026925 28 DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 28 ~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
++....+.+..+.......+...|++++||. ....++-+.
T Consensus 119 ~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~-~~~~~~A~~ 158 (196)
T 2q5c_A 119 KIKEFLFSSEDEITTLISKVKTENIKIVVSG-KTVTDEAIK 158 (196)
T ss_dssp EEEEEEECSGGGHHHHHHHHHHTTCCEEEEC-HHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCeEEECC-HHHHHHHHH
Confidence 4566666677777788888888899999994 344555554
No 344
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=20.62 E-value=1.3e+02 Score=21.53 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.6
Q ss_pred HHHHHHHHhCCC
Q 026925 176 SQLVDLLIKNKS 187 (230)
Q Consensus 176 ~~l~~ll~~~~~ 187 (230)
..+..+++..+.
T Consensus 68 ~~L~~~f~~LgF 79 (178)
T 2h54_A 68 TGMTMLLQNLGY 79 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 444455554443
No 345
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.50 E-value=55 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
..+-+++++||--.-+|......+..++..+.....+++++..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtH 197 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3556899999999988888788888877776433445666544
No 346
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.41 E-value=1.7e+02 Score=18.48 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred ceEEEEEcCcchHHHHHHHHhcCCcEEEE-cChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhC-CC
Q 026925 29 VKSVLLVGGVEVKADVKKIEEEGANLLIG-TPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL-PK 106 (230)
Q Consensus 29 ~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~-TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-~~ 106 (230)
.++..+..+.........+...++++..+ +++.....+.. ...+.+|+|-. +.+..-.+.+..+.+.- ..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~l~~------~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLSGEFDCTTAADGASGLQQALA------HPPDVLISDVN--MDGMDGYALCGHFRSEPTLK 76 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHH------SCCSEEEECSS--CSSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEcCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHhc------CCCCEEEEeCC--CCCCCHHHHHHHHHhCCccC
Confidence 46666665555555555555566666655 44555555555 23568888732 22333344444444432 23
Q ss_pred CCcEEEEeecCch
Q 026925 107 LRRTGLFSATQTE 119 (230)
Q Consensus 107 ~~q~i~~SAt~~~ 119 (230)
...++++|+....
T Consensus 77 ~~pii~~s~~~~~ 89 (133)
T 3nhm_A 77 HIPVIFVSGYAPR 89 (133)
T ss_dssp TCCEEEEESCCC-
T ss_pred CCCEEEEeCCCcH
Confidence 6678888876543
No 347
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=20.40 E-value=1.3e+02 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+.+.+.+|||||-.+ -.+.+..++. ....++||.|+.
T Consensus 253 ~~~~dlliVDEAAaI----p~pll~~ll~----~~~~v~~~tTv~ 289 (671)
T 2zpa_A 253 DEQADWLVVDEAAAI----PAPLLHQLVS----RFPRTLLTTTVQ 289 (671)
T ss_dssp CCCCSEEEEETGGGS----CHHHHHHHHT----TSSEEEEEEEBS
T ss_pred cccCCEEEEEchhcC----CHHHHHHHHh----hCCeEEEEecCC
Confidence 345799999999976 2445555554 333477788864
No 348
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=20.33 E-value=82 Score=19.20 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=22.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+..-++|.|.+.+.++++.+.|.+.
T Consensus 49 GDDTIlvi~r~~~~a~~l~~~i~~l 73 (78)
T 1xxa_A 49 GDDTIFTTPANGFTVKDLYEAILEL 73 (78)
T ss_dssp CSSEEEEEECTTCCHHHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4568999999999999999999865
No 349
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.29 E-value=74 Score=24.84 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=15.2
Q ss_pred cEEEEeccccccccccHHHHHHHHH
Q 026925 78 EILVLDEADRLLDMGFQKQISYIIS 102 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~ 102 (230)
.++++||+|.+... ....+.+++.
T Consensus 98 g~L~LDEi~~l~~~-~q~~Ll~~l~ 121 (304)
T 1ojl_A 98 GTLFLDEIGDISPL-MQVRLLRAIQ 121 (304)
T ss_dssp SEEEEESCTTCCHH-HHHHHHHHHH
T ss_pred CEEEEeccccCCHH-HHHHHHHHHh
Confidence 58999999988543 2333444443
Done!