BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026927
MASSLTKRLDTLNPWLRLAQLRFARTESGPPRRRSKSPSFSMTKPNKEKSEWWIVDGEMH
EIGDHVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLVLKDSEHEVFCKRYMELYQELRE
NWERLYWDEGYSKKLAKDHANYDSAEEDDQDFNPYRSGRKPHGGDQTRDQGFPSYNQGDS
WEKVHQIKDKFEYDRERRMKDKGIFSLAERFLYFVNYHFVFYFMLSFLKA

High Scoring Gene Products

Symbol, full name Information P value
AT3G07440 protein from Arabidopsis thaliana 1.2e-72
AT5G48530 protein from Arabidopsis thaliana 5.1e-67

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026927
        (230 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079671 - symbol:AT3G07440 "AT3G07440" species...   734  1.2e-72   1
TAIR|locus:2166081 - symbol:AT5G48530 "AT5G48530" species...   681  5.1e-67   1


>TAIR|locus:2079671 [details] [associations]
            symbol:AT3G07440 "AT3G07440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC009853
            EMBL:BT002784 EMBL:BT004353 IPI:IPI00527122 RefSeq:NP_187400.1
            UniGene:At.40346 IntAct:Q9SRS2 PRIDE:Q9SRS2
            EnsemblPlants:AT3G07440.1 GeneID:819932 KEGG:ath:AT3G07440
            TAIR:At3g07440 eggNOG:NOG244630 HOGENOM:HOG000090448
            InParanoid:Q9SRS2 OMA:HVPPRER PhylomeDB:Q9SRS2
            ProtClustDB:CLSN2684844 ArrayExpress:Q9SRS2 Genevestigator:Q9SRS2
            Uniprot:Q9SRS2
        Length = 235

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 138/201 (68%), Positives = 161/201 (80%)

Query:     5 LTKRLDTLNPWLR---LAQLRFARTEXXXXXXXXXXXXXXMTKPNKEKSEWWIVDGEMHE 61
             + +R+ ++ P +R   ++Q+R ARTE              + K  +EKSEWWIVDGEMHE
Sbjct:     4 VVRRVGSILPSIRHGGVSQIRLARTEAGQPRRRNKLPSLPLKK-KEEKSEWWIVDGEMHE 62

Query:    62 IGDHVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLVLKDSEHEVFCKRYMELYQELREN 121
             IGDHVPPRERF IPRDNIPNKRRKQLR+QFMRRTRLVLK+SEHE +CK+YMELY ELREN
Sbjct:    63 IGDHVPPRERFTIPRDNIPNKRRKQLRDQFMRRTRLVLKESEHEPWCKKYMELYNELREN 122

Query:   122 WERLYWDEGYSKKLAKDHANYDSAEEDDQDFNPYRSGRKPHGGDQTRDQGFPSYNQGDSW 181
             WERLYWDEGYSKKLA DHANY+SAEEDD+DFNPYR+ R     DQT++QGF    QGD+W
Sbjct:   123 WERLYWDEGYSKKLASDHANYESAEEDDEDFNPYRNRRS--FSDQTKEQGFNRTTQGDNW 180

Query:   182 EKVHQIKDKFEYDRERRMKDK 202
             EKV QI+DKFEYDRERRM+DK
Sbjct:   181 EKVSQIRDKFEYDRERRMRDK 201


>TAIR|locus:2166081 [details] [associations]
            symbol:AT5G48530 "AT5G48530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 IPI:IPI00521470 RefSeq:NP_199664.2
            UniGene:At.70453 EnsemblPlants:AT5G48530.1 GeneID:834909
            KEGG:ath:AT5G48530 OMA:YNEVREN Uniprot:F4K1Q9
        Length = 195

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 129/194 (66%), Positives = 150/194 (77%)

Query:     4 SLTKRLDTLNPWLR--LAQLRFARTEXXXXXXXXXXXXXXMTKPNKEKSEWWIVDGEMHE 61
             S+ +RL +  P L+   + LRF RTE                K  +EKSEWWIVDGEMHE
Sbjct:     3 SVARRLGSATPSLQNGASLLRFMRTEASQPRRRNKFPSLSPLKKKEEKSEWWIVDGEMHE 62

Query:    62 IGDHVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLVLKDSEHEVFCKRYMELYQELREN 121
             IGDHVP RERF IPRDNIPNKRRKQLREQFMRRTRLVLK+SEHE +CK+YMELY E+REN
Sbjct:    63 IGDHVPLRERFTIPRDNIPNKRRKQLREQFMRRTRLVLKESEHEPWCKKYMELYNEVREN 122

Query:   122 WERLYWDEGYSKKLAKDHANYDSAEEDDQDFNPYRSGRKPHGGDQTRDQGFPSYNQGD-S 180
             WERLYWDEGYSKK+A+DHANY+SAEEDD+DFNPYR+ R+P+     ++QGF    QGD +
Sbjct:   123 WERLYWDEGYSKKIARDHANYESAEEDDEDFNPYRN-RRPYNDSIKQEQGFNRTTQGDDN 181

Query:   181 WEKVHQIKDKFEYD 194
             WEKV QI+DKFEYD
Sbjct:   182 WEKVSQIRDKFEYD 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       216   0.00088  112 3  11 22  0.36    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  212 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.65u 0.09s 21.74t   Elapsed:  00:00:23
  Total cpu time:  21.65u 0.09s 21.74t   Elapsed:  00:00:23
  Start:  Thu May  9 14:01:15 2013   End:  Thu May  9 14:01:38 2013

Back to top