BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026927
         (230 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q88938|ENV_WDSV Envelope glycoprotein OS=Walleye dermal sarcoma virus GN=env PE=1
            SV=2
          Length = 1160

 Score = 35.0 bits (79), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 17   RLAQLRFARTESGPPRRRSKSPSFSMTK-----PNKEKSEWWIVDGEMHEIGDHVPPR-- 69
            R   LR A+T    PR    +P+ S  +     P +E  E   +D   HE  DH  P   
Sbjct: 912  RAKLLRHAKTNRRLPRSLRATPAVSAFEMVTFDPQEETVEINRIDPS-HENNDHGGPMNM 970

Query: 70   ------ERFVIPRDNIPNKRRKQLREQFMRRTRLVLKDSEHEVFCKRY 111
                  + + +P   I     ++L  Q MR+   +L D   EVF K Y
Sbjct: 971  APIISADSYALPTPYITIMLDRELLNQGMRKVITLLNDPAREVFNKAY 1018


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,588,057
Number of Sequences: 539616
Number of extensions: 4285940
Number of successful extensions: 10421
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10403
Number of HSP's gapped (non-prelim): 25
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)