BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026928
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/205 (53%), Positives = 143/205 (69%), Gaps = 7/205 (3%)
Query: 31 VANLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFFA 89
V +++ FF+G+ A SC GK FYT NAF+ AAN+Y FG+ GS D KRE+AAFFA
Sbjct: 2 VGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFA 61
Query: 90 HVTHETGHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGF 149
+V HETG LCY+ E + YC +S+T +PC GK Y+GRGP+QL+ N NYGAAG++IGF
Sbjct: 62 NVMHETGGLCYINEKNPPINYCQSSST-WPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGF 120
Query: 150 DGLNSPETVANDPVISFKTALWFWM--TNVHSVVN--QGFGATIQRINGALECGGKQPDK 205
DGLN+PE V D ISFKTA+WFWM +N HS + QGFG TI+ IN ++EC G +
Sbjct: 121 DGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAIN-SMECNGGNSGE 179
Query: 206 VQARIGYYTDYCNKFGVSPGENLSC 230
V +R+ YY C++ GV PG N+SC
Sbjct: 180 VSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 132/228 (57%), Gaps = 35/228 (15%)
Query: 38 EFFDGIKNVADPSCAGKSFYTRNAFLNAANSYPEFG-SGSADESKREIAAFFAHVTHET- 95
+F+ +K++ D C F+T +AF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 69
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY EEIDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 70 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 129
Query: 144 GQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVNQ-------------- 183
G+ +G + L +P+ ++DPVI+FKTA+WFWMT + H V+
Sbjct: 130 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 189
Query: 184 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 190 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 237
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 132/228 (57%), Gaps = 35/228 (15%)
Query: 38 EFFDGIKNVADPSCAGKSFYTRNAFLNAANSYPEFG-SGSADESKREIAAFFAHVTHET- 95
+F+ +K++ D C F+T +AF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 13 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 72
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY EEIDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 73 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 132
Query: 144 GQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVNQ-------------- 183
G+ +G + L +P+ ++DPVI+FKTA+WFWMT + H V+
Sbjct: 133 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 192
Query: 184 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 193 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 240
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 131/228 (57%), Gaps = 35/228 (15%)
Query: 38 EFFDGIKNVADPSCAGKSFYTRNAFLNAANSYPEFG-SGSADESKREIAAFFAHVTHET- 95
+F+ +K++ D C F+T +AF+ AA S+P FG +G K+EIAAFF +HET
Sbjct: 12 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 71
Query: 96 ------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAA 143
CY E IDKS+ +CD++N ++PC PGKFYYGRGP+ L+ N NYG
Sbjct: 72 GGWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 131
Query: 144 GQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVNQ-------------- 183
G+ +G + L +P+ ++DPVI+FKTA+WFWMT + H V+
Sbjct: 132 GRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGRL 191
Query: 184 -GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
G+G ING LEC G+ KVQ RI +YT YC FGV PG N+ C
Sbjct: 192 PGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDC 239
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 134/238 (56%), Gaps = 39/238 (16%)
Query: 29 SQVANLVTPEFFDGI-KNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAA 86
++V +++ FD + K+ D +C GK FY+ NAF+ AA S+ FG+ G ++ KRE+AA
Sbjct: 1 AEVGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAA 60
Query: 87 FFAHVTHETGH-------------LCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQ 133
F A +HET C+V E DKSN YCD S PC GK YYGRGPIQ
Sbjct: 61 FLAQTSHETTGGAATSPDGPYAWGYCFVTERDKSNRYCDGSG---PCSAGKSYYGRGPIQ 117
Query: 134 LTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVNQ---- 183
LT N NY AAG+A+G D +N+P+ VA D V+SFKTALWFWMT + H V+
Sbjct: 118 LTHNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTP 177
Query: 184 -----------GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
GFG ING LECG RIG+Y YC+ FGVS G NL+C
Sbjct: 178 SAADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNC 235
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 135/236 (57%), Gaps = 37/236 (15%)
Query: 31 VANLVTPEFFDG-IKNVADPSCAGKSFYTRNAFLNAANSYPEFG-SGSADESKREIAAFF 88
V+++++ FD + + D +C K FYT +AF+ AAN++P FG +GS D KR++AAF
Sbjct: 3 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFL 62
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E + YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 63 AQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYC-TPSAQWPCAPGKRYYGRGPIQLS 121
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVN------- 182
N NYG AG+AIG D L +P+ VA DP +SFKTALWFWMT + H+V+
Sbjct: 122 HNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSG 181
Query: 183 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
GFG ING LECG Q +V RIG+Y YC+ GV G+NL C
Sbjct: 182 ADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 237
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 128/237 (54%), Gaps = 39/237 (16%)
Query: 30 QVANLVTPEFFDGI-KNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAF 87
V +++ FD + K+ DP+C GK FY+ NAF+ AA S+ FG+ G + KRE+AAF
Sbjct: 1 DVGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAF 60
Query: 88 FAHVTHETGH-------------LCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQL 134
A +HET C+V E DKSN YCD PC GK YYGRGPIQL
Sbjct: 61 LAQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNKYCDPGT---PCPAGKSYYGRGPIQL 117
Query: 135 TGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVNQ----- 183
T N NY AG+A+G D +N+P+ VA D VISFKTA+WFWMT + H V+
Sbjct: 118 THNYNYAQAGRALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPS 177
Query: 184 ----------GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
GFG ING +ECG RIG+Y YC+ +S G NL+C
Sbjct: 178 AADVAANRTPGFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNC 234
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 129/236 (54%), Gaps = 37/236 (15%)
Query: 31 VANLVTPEFFDG-IKNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFF 88
+ +++ FD +K+ +P+C K FYT +AF+ AA S+P FG+ GS D KREIAAF
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
+HET C+++E + S+ YC S +YPC PGK YYGRGPIQL+
Sbjct: 62 GQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPS-PRYPCAPGKSYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVN------- 182
N NYG G+A+ + L +P+ VA D VISFKTALWFWMT + H V+
Sbjct: 121 WNYNYGPCGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSA 180
Query: 183 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
G+G ING LECG +V RIG++ YC GV G NL C
Sbjct: 181 ADTAAGRLPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDC 236
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 133/236 (56%), Gaps = 37/236 (15%)
Query: 31 VANLVTPEFFDG-IKNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFF 88
V+++V+ FD + + D +C K FYT +AF+ AA ++P FG+ GSAD KRE+AAF
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E S+ YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVN------- 182
N NYG AG+AIG D L +P+ VA D + FKTA+WFWMT + H+V+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSG 180
Query: 183 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
GFG ING +ECG Q +V RIG+Y YC+ GV G NL C
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 133/236 (56%), Gaps = 37/236 (15%)
Query: 31 VANLVTPEFFDG-IKNVADPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFF 88
V+++V+ FD + + D +C K FYT +AF+ AA ++ FG+ GSAD KRE+AAF
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAFL 61
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
A +HET C+ +E S+ YC T + Q+PC PGK YYGRGPIQL+
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYC-TPSAQWPCAPGKRYYGRGPIQLS 120
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVV-------- 181
N NYG AG+AIG D L +P+ VA D +SFKTA+WFWMT + H+V+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSG 180
Query: 182 -------NQGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
GFG ING +ECG Q +V RIG+Y YC+ GV G NL C
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 236
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 121/189 (64%), Gaps = 14/189 (7%)
Query: 55 SFYTRNAFLNAANSYPEFGSGSADE-SKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
+FYT +A ++YP F +DE KRE AAF A+V+HETG L Y++E++++N YC
Sbjct: 78 AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGGLFYIKEVNEANYPHYC 137
Query: 112 DTSNTQYPCVPGKF-YYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTAL 170
DT+ + Y C G+ YYGRGPIQL+ N NY AAG A+G + L +P V DP +++KT L
Sbjct: 138 DTTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGL 196
Query: 171 WFW--------MTNVHSVVNQ-GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 221
W+W MT +++VN GFG TI+ INGALEC G P +VQ+RI +T + G
Sbjct: 197 WYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILG 256
Query: 222 VSPGENLSC 230
+ G NLSC
Sbjct: 257 TTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 121/189 (64%), Gaps = 14/189 (7%)
Query: 55 SFYTRNAFLNAANSYPEFGSGSADE-SKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
+FYT +A ++YP F +DE KRE AAF A+V+H+TG L Y++E++++N YC
Sbjct: 78 AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGGLFYIKEVNEANYPHYC 137
Query: 112 DTSNTQYPCVPGKF-YYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTAL 170
DT+ + Y C G+ YYGRGPIQL+ N NY AAG A+G + L +P V DP +++KT L
Sbjct: 138 DTTQS-YGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGL 196
Query: 171 WFW--------MTNVHSVVNQ-GFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 221
W+W MT +++VN GFG TI+ INGALEC G P +VQ+RI +T + G
Sbjct: 197 WYWNSQNGPGTMTPHNAIVNNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILG 256
Query: 222 VSPGENLSC 230
+ G NLSC
Sbjct: 257 TTTGPNLSC 265
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 115/189 (60%), Gaps = 14/189 (7%)
Query: 55 SFYTRNAFLNAANSYPEFG-SGSADESKREIAAFFAHVTHETGHLCYVEEIDKSN--AYC 111
SFYT + A ++YP F +GS K+E AAF A+V HETG L YV E + +N YC
Sbjct: 17 SFYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGGLVYVVEQNTANYPHYC 76
Query: 112 DTSNTQYPCVPGK-FYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTAL 170
D S Y C G YYGRGP+QL+ N NY AAG A+G D LN+P+ V ND +++KT L
Sbjct: 77 DASQP-YGCPAGNDKYYGRGPVQLSWNFNYKAAGDALGIDLLNNPDLVQNDSAVAWKTGL 135
Query: 171 WFW--------MTNVHSVVN-QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFG 221
W+W MT ++VN GFG TI+ ING+LEC G P +VQ+RI Y + G
Sbjct: 136 WYWNTQTGPGTMTPHDAMVNGAGFGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLG 195
Query: 222 VSPGENLSC 230
V PG NLSC
Sbjct: 196 VEPGGNLSC 204
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 122/236 (51%), Gaps = 37/236 (15%)
Query: 31 VANLVTPEFFDGIK-NVADPSCAGKSFYT-RNAFLNAANSYPEFGSGSADESKREIAAFF 88
V ++V + F+ + + D +C + FYT AA G+G+ + KRE+AAF
Sbjct: 58 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFL 117
Query: 89 AHVTHET-------------GHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLT 135
+HET C+ +E + + YC S ++PC PG+ YYGRGPIQL+
Sbjct: 118 GQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPS-PEWPCAPGRKYYGRGPIQLS 176
Query: 136 GNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------NVHSVVN------- 182
N NYG AG+AIG D L++P+ VA D +SFKTALWFWMT + H V+
Sbjct: 177 FNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSP 236
Query: 183 --------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230
G+G +NG LECG D+V RIG+Y YC FG+ G NL C
Sbjct: 237 ADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,512,117
Number of Sequences: 62578
Number of extensions: 322249
Number of successful extensions: 614
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 18
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)