Query 026928
Match_columns 230
No_of_seqs 172 out of 962
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 1.7E-63 3.7E-68 432.9 13.9 196 35-230 1-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 3.4E-63 7.4E-68 432.1 10.5 196 34-230 1-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 8.7E-58 1.9E-62 403.0 11.3 201 30-230 61-286 (286)
4 COG3179 Predicted chitinase [G 100.0 2E-39 4.4E-44 270.4 10.5 168 33-220 2-204 (206)
5 cd00442 lysozyme_like lysozyme 99.4 9.7E-14 2.1E-18 106.9 3.6 81 85-176 1-81 (105)
6 PF09447 Cnl2_NKP2: Cnl2/NKP2 53.0 11 0.00024 27.0 2.0 21 29-49 14-34 (67)
7 PRK13722 lytic transglycosylas 48.2 91 0.002 26.2 7.1 80 129-219 62-141 (169)
8 PF07172 GRP: Glycine rich pro 45.3 18 0.00039 27.5 2.2 17 14-30 6-22 (95)
9 KOG3625 Alpha amylase [Carbohy 37.3 30 0.00065 36.8 3.0 51 129-181 1092-1149(1521)
10 PF10880 DUF2673: Protein of u 35.6 53 0.0012 22.9 3.1 32 14-45 4-40 (65)
11 PF02705 K_trans: K+ potassium 32.9 26 0.00057 34.7 1.8 50 125-175 225-278 (534)
12 PF12451 VPS11_C: Vacuolar pro 29.3 23 0.00051 23.5 0.5 18 86-103 23-40 (49)
13 PRK15328 invasion protein IagB 27.1 1.8E+02 0.0038 24.1 5.6 80 127-219 59-138 (160)
14 TIGR00794 kup potassium uptake 26.7 39 0.00084 34.5 1.8 49 125-174 262-314 (688)
15 PRK05113 electron transport co 26.3 1.8E+02 0.004 24.5 5.6 45 21-67 18-65 (191)
16 TIGR01944 rnfB electron transp 25.4 2.1E+02 0.0046 23.4 5.8 50 17-68 12-64 (165)
17 PF13833 EF-hand_8: EF-hand do 24.0 1.1E+02 0.0023 19.6 3.1 34 32-67 18-52 (54)
18 cd08327 CARD_RAIDD Caspase act 22.1 55 0.0012 24.8 1.5 39 32-70 33-80 (94)
19 PF08976 DUF1880: Domain of un 21.2 90 0.002 24.8 2.5 33 33-67 2-34 (118)
20 PRK11548 outer membrane biogen 20.8 1.2E+02 0.0026 23.4 3.2 12 34-45 37-48 (113)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=1.7e-63 Score=432.92 Aligned_cols=196 Identities=61% Similarity=1.141 Sum_probs=180.1
Q ss_pred CCHHHHHHhhccC-CCCCCCCCcccHHHHHHHhccccccCC-CCCCCCHHHHHHhhhhccccCCCceehhhcCCCC-ccc
Q 026928 35 VTPEFFDGIKNVA-DPSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFFAHVTHETGHLCYVEEIDKSN-AYC 111 (230)
Q Consensus 35 iT~~~f~~i~p~~-~~~~~~~~~yt~~~fi~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~~-~Y~ 111 (230)
||+++|++|||++ +..|++++||||++||+|+++|+.|++ |++.++++|+||||||++|||++|++++|....+ .||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 6899999999997 567999999999999999999999998 8888999999999999999999999998865432 455
Q ss_pred cCCC----------CCCcCCCCCccccCCccccccchhHHHHHHHhcCcCCCCcccccCChhHHHHHHHHHHHh------
Q 026928 112 DTSN----------TQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT------ 175 (230)
Q Consensus 112 ~~~n----------~~y~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~a~~sA~wfW~~------ 175 (230)
.... .+|+|+||++|+|||+||||||+||+++++++|+||++|||+|++||.+|+++|+||||+
T Consensus 81 ~~~e~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k~ 160 (230)
T cd00325 81 DKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPKP 160 (230)
T ss_pred ccccCCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCCCC
Confidence 4321 468999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhh---------------ccCcccceeeeccccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 026928 176 NVHSVV---------------NQGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230 (230)
Q Consensus 176 ~~~~~~---------------d~gf~~~t~~INGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c 230 (230)
++|++| .++|+.||+|||||+||++++.+++++|+++|+++|++|||+||+||+|
T Consensus 161 s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 161 SCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred CcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 467666 1579999999999999999999999999999999999999999999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=3.4e-63 Score=432.09 Aligned_cols=196 Identities=56% Similarity=1.074 Sum_probs=163.4
Q ss_pred CCCHHHHHHhhccCC-CCCCCCCcccHHHHHHHhccccccCC-CCCCCCHHHHHHhhhhccccCCCceehhhcCCC----
Q 026928 34 LVTPEFFDGIKNVAD-PSCAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFFAHVTHETGHLCYVEEIDKS---- 107 (230)
Q Consensus 34 ~iT~~~f~~i~p~~~-~~~~~~~~yt~~~fi~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~---- 107 (230)
|||+++|++|||+++ ..|++++||||++||+|+++|+.|++ |++.++++|+||||||++|||+++.+++|....
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 699999999999975 77999999999999999999999998 888899999999999999999999998886432
Q ss_pred ---------CccccCCCCCCcCCCCCccccCCccccccchhHHHHHHHhcCcCCCCcccccCChhHHHHHHHHHHHh---
Q 026928 108 ---------NAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMT--- 175 (230)
Q Consensus 108 ---------~~Y~~~~n~~y~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~a~~sA~wfW~~--- 175 (230)
..||+. +..++|+||++|||||+|||||++||+++++++|+||++|||+|++||.+||++|+||||+
T Consensus 81 c~~~e~~~~~~y~~~-~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~ 159 (232)
T PF00182_consen 81 CYKREKGANSDYCNR-NGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQP 159 (232)
T ss_dssp S-SB-SS-SSGG--T-TSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBT
T ss_pred ccccccCCccccccC-ccCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCC
Confidence 134443 3578899999999999999999999999999999999999999999999999999999998
Q ss_pred ---hhhhhhc---------------cCcccceeeeccccccCCCCchhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 026928 176 ---NVHSVVN---------------QGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLSC 230 (230)
Q Consensus 176 ---~~~~~~d---------------~gf~~~t~~INGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c 230 (230)
++|+++. +||+.|++|||||+||+++++.++.+|+++|+++|++|||++|+||+|
T Consensus 160 ~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 160 PKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp TBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred CccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 4888873 489999999999999999999999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=8.7e-58 Score=402.96 Aligned_cols=201 Identities=60% Similarity=1.086 Sum_probs=186.2
Q ss_pred hccCCCCHHHHHHhhccCCCC-CCCCCcccHHHHHHHhccccccCC-CCCCCCHHHHHHhhhhccccC---------C--
Q 026928 30 QVANLVTPEFFDGIKNVADPS-CAGKSFYTRNAFLNAANSYPEFGS-GSADESKREIAAFFAHVTHET---------G-- 96 (230)
Q Consensus 30 ~~~~~iT~~~f~~i~p~~~~~-~~~~~~yt~~~fi~a~n~~~~fg~-g~~i~t~~~~A~FLAq~~hET---------g-- 96 (230)
+++++||++||+.||++++.+ |++++||||++|+.|.+.|++||+ |+..+.++|+|+||||+.||| |
T Consensus 61 ~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~ 140 (286)
T KOG4742|consen 61 KIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPF 140 (286)
T ss_pred cccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCcc
Confidence 389999999999999998777 999999999999999999999998 777899999999999999999 7
Q ss_pred --CceehhhcCC-CCccccCCCCC-CcCCCCCccccCCccccccchhHHHHHHHhcCcCCCCcccccCChhHHHHHHHHH
Q 026928 97 --HLCYVEEIDK-SNAYCDTSNTQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWF 172 (230)
Q Consensus 97 --~f~~~~E~~~-~~~Y~~~~n~~-y~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~a~~sA~wf 172 (230)
+|++.+|+.. ...||+..++. |||.+|+.|+|||+|||+|+|||++++++||+||+++||+|++||.+||++|+||
T Consensus 141 ~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWf 220 (286)
T KOG4742|consen 141 YWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWF 220 (286)
T ss_pred ccCcccccccChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeeee
Confidence 8999999988 56899998877 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh----hhhh---ccCcccceeeeccccccCCCCchhHH-HHHHHHHHHHHHcCCCCCCCCCC
Q 026928 173 WMTNV----HSVV---NQGFGATIQRINGALECGGKQPDKVQ-ARIGYYTDYCNKFGVSPGENLSC 230 (230)
Q Consensus 173 W~~~~----~~~~---d~gf~~~t~~INGg~ec~~~~~~~~~-~R~~~y~~~~~~Lgv~~g~~l~c 230 (230)
||+.. ++.+ .++|+.|+++|||++||++++.++.+ +|+++|+.++++|||+||+||+|
T Consensus 221 wmt~~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 221 WMTPVRPVLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred eccCCchhhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 99953 3333 25899999999999999998855555 59999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=2e-39 Score=270.44 Aligned_cols=168 Identities=26% Similarity=0.428 Sum_probs=144.5
Q ss_pred CCCCHHHHHHhhccCCCCCCCCCcccHHHHHHHhcc-ccccCCCCCCCCHHHHHHhhhhccccCCCceehhhcCCCC---
Q 026928 33 NLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAANS-YPEFGSGSADESKREIAAFFAHVTHETGHLCYVEEIDKSN--- 108 (230)
Q Consensus 33 ~~iT~~~f~~i~p~~~~~~~~~~~yt~~~fi~a~n~-~~~fg~g~~i~t~~~~A~FLAq~~hETg~f~~~~E~~~~~--- 108 (230)
..||+.+|.+|+|++.. ....++.++.. +.+|| |++|.|+||||||+.||||+|..+.|+.+++
T Consensus 2 ~~i~e~~~~ki~p~a~k--------~~~~v~~al~~~l~~~g----i~~p~r~AmFlAQ~~HESggf~rl~EnlnYSaq~ 69 (206)
T COG3179 2 KTITEVDLRKIFPKARK--------EFVDVIVALQPALDEAG----ITTPLRQAMFLAQVMHESGGFTRLDENLNYSAQG 69 (206)
T ss_pred cchhHHHHHHhcchhhh--------hhHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhhcCCceeehhhcchHHHH
Confidence 46899999999998532 13556777776 78999 9999999999999999999999999976543
Q ss_pred -------cc----------------------ccCCCCCCcCCCCCccccCCccccccchhHHHHHHHhcCcCCCCccccc
Q 026928 109 -------AY----------------------CDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVA 159 (230)
Q Consensus 109 -------~Y----------------------~~~~n~~y~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva 159 (230)
.| .+.+|....++|||+|||||.|||||++||..+++++|.||+.+|+.+.
T Consensus 70 L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~~~~ 149 (206)
T COG3179 70 LLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPGQLE 149 (206)
T ss_pred HHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChhhhc
Confidence 11 1234666678999999999999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHh-hhhhhhccC-cccceeeeccccccCCCCchhHHHHHHHHHHHHHHc
Q 026928 160 NDPVISFKTALWFWMT-NVHSVVNQG-FGATIQRINGALECGGKQPDKVQARIGYYTDYCNKF 220 (230)
Q Consensus 160 ~d~~~a~~sA~wfW~~-~~~~~~d~g-f~~~t~~INGg~ec~~~~~~~~~~R~~~y~~~~~~L 220 (230)
.+| ++.++|+|||.+ +|+..+|+| +..||++||||. ||+++|...|+++.-++
T Consensus 150 ~~~-~~a~~a~wyw~~~g~n~~aD~gd~~~VT~~INGG~-------NG~~dR~~r~~~a~~v~ 204 (206)
T COG3179 150 LDP-HAARVAAWYWKTRGLNALADEGDLVRVTRKINGGL-------NGLDDRLARYRRASGVL 204 (206)
T ss_pred cCh-HhhhhHHHHHHhccHHHhhccCChhhhhhhhcCcc-------ccHHHHHHHHHHHhccc
Confidence 754 799999999998 999999865 999999999996 99999999999987654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.42 E-value=9.7e-14 Score=106.90 Aligned_cols=81 Identities=22% Similarity=0.113 Sum_probs=71.7
Q ss_pred HHhhhhccccCCCceehhhcCCCCccccCCCCCCcCCCCCccccCCccccccchhHHHHHHHhcCcCCCCcccccCChhH
Q 026928 85 AAFFAHVTHETGHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVI 164 (230)
Q Consensus 85 A~FLAq~~hETg~f~~~~E~~~~~~Y~~~~n~~y~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~ 164 (230)
|.|.++..||+.+++..++.+ || +|..|..|+|||+||+||++||...++.+++|++++|++++.+|.+
T Consensus 1 a~~~~i~~~E~~~~~~~~~~G----y~-------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDRG----HG-------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLLAQLILKLFNPKV 69 (105)
T ss_pred ChhhhhhhcccCCCcccccCC----CC-------CCCCCCcccccCceeeeeccCccccccccCcchhcCcchhccCchH
Confidence 578999999999888776532 55 4666788999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 026928 165 SFKTALWFWMTN 176 (230)
Q Consensus 165 a~~sA~wfW~~~ 176 (230)
++..+.||||..
T Consensus 70 ~~~~a~~~~~~~ 81 (105)
T cd00442 70 QDKQALQQIKNA 81 (105)
T ss_pred HHHHHHHHHHhc
Confidence 999999999983
No 6
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=53.03 E-value=11 Score=27.02 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=18.1
Q ss_pred hhccCCCCHHHHHHhhccCCC
Q 026928 29 SQVANLVTPEFFDGIKNVADP 49 (230)
Q Consensus 29 ~~~~~~iT~~~f~~i~p~~~~ 49 (230)
+.+.++||.++|.++||+.-.
T Consensus 14 s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 14 SSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred CccccccCHHHHHHHccccCC
Confidence 478999999999999998543
No 7
>PRK13722 lytic transglycosylase; Provisional
Probab=48.20 E-value=91 Score=26.22 Aligned_cols=80 Identities=16% Similarity=0.380 Sum_probs=44.9
Q ss_pred CCccccccchhHHHHHHHhcCcCCCCcccccCChhHHHHHHHHHHHhhhhhhhccCcccceeeeccccccCCCCchhHHH
Q 026928 129 RGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMTNVHSVVNQGFGATIQRINGALECGGKQPDKVQA 208 (230)
Q Consensus 129 RG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~d~gf~~~t~~INGg~ec~~~~~~~~~~ 208 (230)
.|++||. ...-....+ +|+. |+.+..||.+.+..+.||-...+.+. +..+ .....=|.|.. ........
T Consensus 62 ~GLMQIn-~~~~~~l~~-~gi~----~~~ll~DPc~NI~~Gaw~L~~~~~~~-g~~w-~AvaaYNaG~~---~~~~~~~~ 130 (169)
T PRK13722 62 SGLMQVD-SQHFNELAR-YGIK----PEHLTTDPCMNIYTGAYYLAIAFKKW-GVSW-EAVGAYNAGFR---KTERQNQR 130 (169)
T ss_pred ecCCccc-HHHHHHHHH-cCCC----HHHHccCHHHHHHHHHHHHHHHHHHc-CCch-heeeecCCCCC---ccccchHH
Confidence 6999986 222333333 3432 55555689999999999887644432 2112 24445566621 11123466
Q ss_pred HHHHHHHHHHH
Q 026928 209 RIGYYTDYCNK 219 (230)
Q Consensus 209 R~~~y~~~~~~ 219 (230)
|.+|-++..++
T Consensus 131 r~~Ya~kV~~~ 141 (169)
T PRK13722 131 RLAYASEVYRI 141 (169)
T ss_pred HHHHHHHHHHH
Confidence 77776666654
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.25 E-value=18 Score=27.51 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhHhhhhh
Q 026928 14 LLFAIFTLAIPTIVLSQ 30 (230)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (230)
+|+|.|++|+++.|++.
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44445556665555443
No 9
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=37.26 E-value=30 Score=36.78 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=33.8
Q ss_pred CCccccccchhHHHHH-----HHhcCcCCCCccccc--CChhHHHHHHHHHHHhhhhhhh
Q 026928 129 RGPIQLTGNGNYGAAG-----QAIGFDGLNSPETVA--NDPVISFKTALWFWMTNVHSVV 181 (230)
Q Consensus 129 RG~iQLTg~~NY~~~~-----~~lg~dl~~~Pdlva--~d~~~a~~sA~wfW~~~~~~~~ 181 (230)
||.+-+|||++=.++- +.+..-|+ |.|+. ..|.+..+-|.|||+..+.++.
T Consensus 1092 rG~ll~TGRy~EAr~iIlaFa~tlrHGLI--PNLLd~G~~~RyNcRDA~W~wl~~Iq~Yv 1149 (1521)
T KOG3625|consen 1092 RGILLITGRYVEARNIILAFAGTLRHGLI--PNLLDEGIYARYNCRDAVWWWLQCIQDYV 1149 (1521)
T ss_pred ccceEeecchHHHHHHHHHHHHHhhcccc--chhhhccccccccchHHHHHHHHHHHHHH
Confidence 6899999998865432 22222232 55554 3688999999999998554433
No 10
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=35.58 E-value=53 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhHhhhhh-----ccCCCCHHHHHHhhc
Q 026928 14 LLFAIFTLAIPTIVLSQ-----VANLVTPEFFDGIKN 45 (230)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~iT~~~f~~i~p 45 (230)
|++.+|.||+++||-++ -..-||..++.+|-.
T Consensus 4 llkillilafa~pvfassmq~p~pasvtttqi~amst 40 (65)
T PF10880_consen 4 LLKILLILAFASPVFASSMQMPDPASVTTTQIQAMST 40 (65)
T ss_pred HHHHHHHHHHhhhHhhhcccCCCCcceeHHHHHHhcc
Confidence 67777778888888774 334567777776654
No 11
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=32.92 E-value=26 Score=34.67 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=34.6
Q ss_pred ccccCCccccccch-hHHHH-HHHhcC--cCCCCcccccCChhHHHHHHHHHHHh
Q 026928 125 FYYGRGPIQLTGNG-NYGAA-GQAIGF--DGLNSPETVANDPVISFKTALWFWMT 175 (230)
Q Consensus 125 ~Y~GRG~iQLTg~~-NY~~~-~~~lg~--dl~~~Pdlva~d~~~a~~sA~wfW~~ 175 (230)
..+||.+||++|-. =|-.. -.|+|. =+++||+.+. ||-+......++|--
T Consensus 225 GHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~-npFf~~~P~~~~~p~ 278 (534)
T PF02705_consen 225 GHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVS-NPFFLLIPEWLLWPM 278 (534)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhh-hHHHHHhHHHHHHHH
Confidence 48999999999987 22111 123343 2789999875 798888777777743
No 12
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=29.31 E-value=23 Score=23.52 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=8.7
Q ss_pred HhhhhccccCCCceehhh
Q 026928 86 AFFAHVTHETGHLCYVEE 103 (230)
Q Consensus 86 ~FLAq~~hETg~f~~~~E 103 (230)
.|..++...+.+|..+-|
T Consensus 23 ~F~~~L~~s~D~F~vIae 40 (49)
T PF12451_consen 23 LFFKQLEESEDRFSVIAE 40 (49)
T ss_pred HHHHHHHhCCCCchhHHH
Confidence 345555444445555544
No 13
>PRK15328 invasion protein IagB; Provisional
Probab=27.13 E-value=1.8e+02 Score=24.12 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=42.4
Q ss_pred ccCCccccccchhHHHHHHHhcCcCCCCcccccCChhHHHHHHHHHHHhhhhhhhccCcccceeeeccccccCCCCchhH
Q 026928 127 YGRGPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMTNVHSVVNQGFGATIQRINGALECGGKQPDKV 206 (230)
Q Consensus 127 ~GRG~iQLTg~~NY~~~~~~lg~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~~~d~gf~~~t~~INGg~ec~~~~~~~~ 206 (230)
+-.|++||.- .+...+ +.+|+ ..+++ ..||...+..+.||-...+.+. +..+ .....=|.|.. ....
T Consensus 59 ~d~GLMQIn~-~~~~~l-~~~gv---~~~~l-l~DPc~NI~~Ga~~L~~~~~~~-g~~~-~alaaYNaG~~-----~~~~ 125 (160)
T PRK15328 59 TDLGLMQINS-FHMKRL-KKMGI---SEKQL-LQDPCISVIVGASILSDMMKIY-GYSW-EAVGAYNAGTS-----PKRS 125 (160)
T ss_pred cccChhhcCH-HHHHHH-HHcCC---ChHHH-hcCHHHHHHHHHHHHHHHHHHc-CChH-HhhhhccCCCC-----CCCC
Confidence 3469999962 223333 23454 23444 4589999999999876533321 1112 23345566531 2233
Q ss_pred HHHHHHHHHHHHH
Q 026928 207 QARIGYYTDYCNK 219 (230)
Q Consensus 207 ~~R~~~y~~~~~~ 219 (230)
..|.+|..+..+.
T Consensus 126 ~~~~~Y~~kV~~~ 138 (160)
T PRK15328 126 DIRKRYAKKIWEN 138 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666555443
No 14
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=26.66 E-value=39 Score=34.52 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=32.5
Q ss_pred ccccCCccccccch-hHHHH-HHHhcC--cCCCCcccccCChhHHHHHHHHHHH
Q 026928 125 FYYGRGPIQLTGNG-NYGAA-GQAIGF--DGLNSPETVANDPVISFKTALWFWM 174 (230)
Q Consensus 125 ~Y~GRG~iQLTg~~-NY~~~-~~~lg~--dl~~~Pdlva~d~~~a~~sA~wfW~ 174 (230)
..+||.+||++|-. =|-.. -.|+|. =++.||+.+. ||-+.......+|-
T Consensus 262 GHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~-NpFf~~~P~~~~~p 314 (688)
T TIGR00794 262 GHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIK-NPFFLSIPDWALWP 314 (688)
T ss_pred CCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhc-CcHHHhCchHHHHH
Confidence 48999999999972 22111 123333 2678998875 78888777677774
No 15
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=26.31 E-value=1.8e+02 Score=24.54 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=29.3
Q ss_pred HhhhHhhhh---hccCCCCHHHHHHhhccCCCCCCCCCcccHHHHHHHhc
Q 026928 21 LAIPTIVLS---QVANLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAAN 67 (230)
Q Consensus 21 ~~~~~~~~~---~~~~~iT~~~f~~i~p~~~~~~~~~~~yt~~~fi~a~n 67 (230)
++..+.+.+ .|++.=+.+++++++|..+.+ +=++-.-..|.+++.
T Consensus 18 ~g~~l~~a~~~~~ve~dp~~~~l~~~lP~~nCg--~Cg~~~c~~~a~av~ 65 (191)
T PRK05113 18 FGAILGFASRRFKVEGDPIVEKIDAILPQSQCG--QCGYPGCRPYAEAIA 65 (191)
T ss_pred HHHHHHHHhcCccccCCChHHHHHHhCCcCCcc--ccCCCCcHHHHHHHh
Confidence 333344444 477777789999999986644 333334577888876
No 16
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=25.43 E-value=2.1e+02 Score=23.36 Aligned_cols=50 Identities=10% Similarity=-0.058 Sum_probs=31.0
Q ss_pred HHHHHhhhHhhhh---hccCCCCHHHHHHhhccCCCCCCCCCcccHHHHHHHhcc
Q 026928 17 AIFTLAIPTIVLS---QVANLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAANS 68 (230)
Q Consensus 17 ~~~~~~~~~~~~~---~~~~~iT~~~f~~i~p~~~~~~~~~~~yt~~~fi~a~n~ 68 (230)
+-|.++..+++.+ -|++.=+.+++++++|..+.+ .=++-.-..|..++.+
T Consensus 12 ~g~~~~~~l~~~~~~~~ve~~p~~~~i~~~lP~~nCg--~Cg~~~c~~~a~av~~ 64 (165)
T TIGR01944 12 LGLALGAILGYAARRFPVEADPIVEEIDALLPQTQCG--QCGYPGCRPYAEAIAE 64 (165)
T ss_pred HHHHHHHHHHHheeeeeccCCChHHHHHHhCCCCCCc--cCCCCChHHHHHHHHc
Confidence 3344555555555 366666779999999986544 2232235678877764
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=24.04 E-value=1.1e+02 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=24.5
Q ss_pred cCC-CCHHHHHHhhccCCCCCCCCCcccHHHHHHHhc
Q 026928 32 ANL-VTPEFFDGIKNVADPSCAGKSFYTRNAFLNAAN 67 (230)
Q Consensus 32 ~~~-iT~~~f~~i~p~~~~~~~~~~~yt~~~fi~a~n 67 (230)
.-. +|+++++.||...+.. .++.-++++|+..+.
T Consensus 18 g~~~~s~~e~~~l~~~~D~~--~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 18 GIKDLSEEEVDRLFREFDTD--GDGYISFDEFISMMQ 52 (54)
T ss_dssp TSSSSCHHHHHHHHHHHTTS--SSSSEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcccC--CCCCCCHHHHHHHHH
Confidence 444 8999999999875444 355678899887764
No 18
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.14 E-value=55 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=24.8
Q ss_pred cCCCCHHHHHHhhccCCCC---------CCCCCcccHHHHHHHhcccc
Q 026928 32 ANLVTPEFFDGIKNVADPS---------CAGKSFYTRNAFLNAANSYP 70 (230)
Q Consensus 32 ~~~iT~~~f~~i~p~~~~~---------~~~~~~yt~~~fi~a~n~~~ 70 (230)
..+||.++.+.|-...... -|.+|..-+..|++++..||
T Consensus 33 ~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 33 EGILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 4589999998888652211 34455556677777776543
No 19
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=21.23 E-value=90 Score=24.82 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=18.8
Q ss_pred CCCCHHHHHHhhccCCCCCCCCCcccHHHHHHHhc
Q 026928 33 NLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAAN 67 (230)
Q Consensus 33 ~~iT~~~f~~i~p~~~~~~~~~~~yt~~~fi~a~n 67 (230)
.++|.|||+.++..-.- -.++-..|.+|+...+
T Consensus 2 qiLtDeQFdrLW~e~Pv--n~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 2 QILTDEQFDRLWNEMPV--NAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ----HHHHHHHHTTS-B---TTS-EEHHHHHHHT-
T ss_pred ccccHHHhhhhhhhCcC--CccCCEeHHHHHHHcc
Confidence 47899999999975211 1245567899887765
No 20
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=20.82 E-value=1.2e+02 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=6.4
Q ss_pred CCCHHHHHHhhc
Q 026928 34 LVTPEFFDGIKN 45 (230)
Q Consensus 34 ~iT~~~f~~i~p 45 (230)
+++++++++|-+
T Consensus 37 ~~~~~~l~~l~~ 48 (113)
T PRK11548 37 YLTPNDVAKIHV 48 (113)
T ss_pred cCCHHHHHHhcC
Confidence 455555555554
Done!