BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026929
         (230 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSC|F Chain F, Improved Model Of Plant Photosystem I
 pdb|2WSE|F Chain F, Improved Model Of Plant Photosystem I
 pdb|2WSF|F Chain F, Improved Model Of Plant Photosystem I
          Length = 231

 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 154/227 (67%), Gaps = 1/227 (0%)

Query: 1   MSLTIPTNLSKPL-LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXX 59
           MS TIPTNL KPL  KP+  S  S A  SK +                        A   
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALAL 60

Query: 60  XXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIK 119
                      P  A+ADI+GLTPCKESKQFAKR              YA DSAPALAIK
Sbjct: 61  SSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIK 120

Query: 120 ATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRS 179
           ATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRS
Sbjct: 121 ATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRS 180

Query: 180 YLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 226
           YLIAI  EKKP  KEIIIDVPLAS L+FRGFSWPVAAYRE +NGELV
Sbjct: 181 YLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227


>pdb|2O01|F Chain F, The Structure Of A Plant Photosystem I Supercomplex At 3.4
           Angstrom Resolution
 pdb|3LW5|F Chain F, Improved Model Of Plant Photosystem I
          Length = 154

 Score =  260 bits (664), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 129/150 (86%)

Query: 77  DISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYG 136
           DI+GLTPCKESKQFAKR              YA DSAPALAIKATMEKTK+RFDNYGKYG
Sbjct: 1   DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYG 60

Query: 137 LLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEII 196
           LLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEII
Sbjct: 61  LLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII 120

Query: 197 IDVPLASRLVFRGFSWPVAAYREFVNGELV 226
           IDVPLAS L+FRGFSWPVAAYRE +NGELV
Sbjct: 121 IDVPLASSLLFRGFSWPVAAYRELLNGELV 150


>pdb|1JB0|F Chain F, Crystal Structure Of Photosystem I: A Photosynthetic
           Reaction Center And Core Antenna System From
           Cyanobacteria
 pdb|3PCQ|F Chain F, Femtosecond X-Ray Protein Nanocrystallography
 pdb|4FE1|F Chain F, Improving The Accuracy Of Macromolecular Structure
           Refinement At 7 A Resolution
          Length = 164

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 20/156 (12%)

Query: 74  AVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYG 133
           A AD++GL PCK+S  F KR                  +A A+   A     ++RF+ Y 
Sbjct: 21  ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYS 62

Query: 134 KYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMK 193
           +   LCG DGLPHL+V G     G+F+ P +LFLYIAGWIGWVGR+YLIA+    +   K
Sbjct: 63  QA--LCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEK 120

Query: 194 EIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
           EIIIDVPLA + +  GF+WP+AA +E  +GEL  KD
Sbjct: 121 EIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156


>pdb|1QZV|F Chain F, Crystal Structure Of Plant Photosystem I
 pdb|1QZV|U Chain U, Crystal Structure Of Plant Photosystem I
          Length = 154

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 15/16 (93%), Positives = 15/16 (93%)

Query: 108 YAPDSAPALAIKATME 123
           YA DSAPALAIKATME
Sbjct: 32  YADDSAPALAIKATME 47


>pdb|1MVA|A Chain A, Structure Of A Protein Capsid Of The T45a Mutant Of Phage
           Ms2
 pdb|1MVA|B Chain B, Structure Of A Protein Capsid Of The T45a Mutant Of Phage
           Ms2
 pdb|1MVA|C Chain C, Structure Of A Protein Capsid Of The T45a Mutant Of Phage
           Ms2
 pdb|1AQ4|A Chain A, Structure Of A Ms2 Coat Protein Mutant In Complex With An
           Rna Operator
 pdb|1AQ4|B Chain B, Structure Of A Ms2 Coat Protein Mutant In Complex With An
           Rna Operator
 pdb|1AQ4|C Chain C, Structure Of A Ms2 Coat Protein Mutant In Complex With An
           Rna Operator
          Length = 129

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +A S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVACSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|1MST|A Chain A, Crystal Structure Of Ms2 Capsids With Mutations In The
           Subunit Fg Loop
 pdb|1MST|B Chain B, Crystal Structure Of Ms2 Capsids With Mutations In The
           Subunit Fg Loop
 pdb|1MST|C Chain C, Crystal Structure Of Ms2 Capsids With Mutations In The
           Subunit Fg Loop
          Length = 129

 Score = 30.4 bits (67), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVDLPVAAWRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|2MS2|A Chain A, The Refined Structure Of Bacteriophage Ms2 At 2.8
           Angstroms Resolution
 pdb|2MS2|B Chain B, The Refined Structure Of Bacteriophage Ms2 At 2.8
           Angstroms Resolution
 pdb|2MS2|C Chain C, The Refined Structure Of Bacteriophage Ms2 At 2.8
           Angstroms Resolution
 pdb|1ZDH|A Chain A, Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDH|B Chain B, Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDH|C Chain C, Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDI|A Chain A, Rna Bacteriophage Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDI|B Chain B, Rna Bacteriophage Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDI|C Chain C, Rna Bacteriophage Ms2 Coat ProteinRNA COMPLEX
 pdb|1ZDJ|A Chain A, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|1ZDJ|B Chain B, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|1ZDJ|C Chain C, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|6MSF|A Chain A, F6 Aptamer Ms2 Coat Protein Complex
 pdb|6MSF|B Chain B, F6 Aptamer Ms2 Coat Protein Complex
 pdb|6MSF|C Chain C, F6 Aptamer Ms2 Coat Protein Complex
 pdb|5MSF|A Chain A, Ms2 Protein CapsidRNA COMPLEX
 pdb|5MSF|B Chain B, Ms2 Protein CapsidRNA COMPLEX
 pdb|5MSF|C Chain C, Ms2 Protein CapsidRNA COMPLEX
 pdb|7MSF|A Chain A, Ms2 Protein CapsidRNA COMPLEX
 pdb|7MSF|B Chain B, Ms2 Protein CapsidRNA COMPLEX
 pdb|7MSF|C Chain C, Ms2 Protein CapsidRNA COMPLEX
 pdb|1ZDK|A Chain A, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|1ZDK|B Chain B, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|1ZDK|C Chain C, Structure Of Bacteriophage Coat Protein-Loop Rna Complex
 pdb|1U1Y|A Chain A, Crystal Structure Of A Complex Between Wt Bacteriophage
           Ms2 Coat Protein And An F5 Aptamer Rna Stemloop With
           2aminopurine Substituted At The-10 Position
 pdb|1U1Y|B Chain B, Crystal Structure Of A Complex Between Wt Bacteriophage
           Ms2 Coat Protein And An F5 Aptamer Rna Stemloop With
           2aminopurine Substituted At The-10 Position
 pdb|1U1Y|C Chain C, Crystal Structure Of A Complex Between Wt Bacteriophage
           Ms2 Coat Protein And An F5 Aptamer Rna Stemloop With
           2aminopurine Substituted At The-10 Position
 pdb|2BU1|A Chain A, Ms2-Rna Hairpin (5bru-5) Complex
 pdb|2BU1|B Chain B, Ms2-Rna Hairpin (5bru-5) Complex
 pdb|2BU1|C Chain C, Ms2-Rna Hairpin (5bru-5) Complex
 pdb|2C4Q|A Chain A, Ms2-Rna Hairpin (2one -5) Complex Virus
 pdb|2C4Q|B Chain B, Ms2-Rna Hairpin (2one -5) Complex Virus
 pdb|2C4Q|C Chain C, Ms2-Rna Hairpin (2one -5) Complex Virus
 pdb|2C4Y|A Chain A, Ms2-Rna Hairpin (2thiouracil-5) Complex
 pdb|2C4Y|B Chain B, Ms2-Rna Hairpin (2thiouracil-5) Complex
 pdb|2C4Y|C Chain C, Ms2-Rna Hairpin (2thiouracil-5) Complex
 pdb|2C4Z|A Chain A, Ms2-Rna Hairpin (2su -5-6) Complex
 pdb|2C4Z|B Chain B, Ms2-Rna Hairpin (2su -5-6) Complex
 pdb|2C4Z|C Chain C, Ms2-Rna Hairpin (2su -5-6) Complex
 pdb|2C50|A Chain A, Ms2-rna Hairpin (a -5) Complex
 pdb|2C50|B Chain B, Ms2-rna Hairpin (a -5) Complex
 pdb|2C50|C Chain C, Ms2-rna Hairpin (a -5) Complex
 pdb|2C51|A Chain A, Ms2-Rna Hairpin (G -5) Complex
 pdb|2C51|B Chain B, Ms2-Rna Hairpin (G -5) Complex
 pdb|2C51|C Chain C, Ms2-Rna Hairpin (G -5) Complex
 pdb|2IZ8|A Chain A, Ms2-Rna Hairpin (C-7) Complex
 pdb|2IZ8|B Chain B, Ms2-Rna Hairpin (C-7) Complex
 pdb|2IZ8|C Chain C, Ms2-Rna Hairpin (C-7) Complex
 pdb|2IZ9|A Chain A, Ms2-Rna Hairpin (4one-5) Complex
 pdb|2IZ9|B Chain B, Ms2-Rna Hairpin (4one-5) Complex
 pdb|2IZ9|C Chain C, Ms2-Rna Hairpin (4one-5) Complex
 pdb|2IZN|A Chain A, Ms2-rna Hairpin (g-10) Complex
 pdb|2IZN|B Chain B, Ms2-rna Hairpin (g-10) Complex
 pdb|2IZN|C Chain C, Ms2-rna Hairpin (g-10) Complex
 pdb|2IZM|A Chain A, Ms2-rna Hairpin (c-10) Complex
 pdb|2IZM|B Chain B, Ms2-rna Hairpin (c-10) Complex
 pdb|2IZM|C Chain C, Ms2-rna Hairpin (c-10) Complex
          Length = 129

 Score = 30.4 bits (67), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|1MVB|A Chain A, Structure Of A Protein Capsid Of The T59s Mutant Of Phage
           Ms2
 pdb|1MVB|B Chain B, Structure Of A Protein Capsid Of The T59s Mutant Of Phage
           Ms2
 pdb|1MVB|C Chain C, Structure Of A Protein Capsid Of The T59s Mutant Of Phage
           Ms2
 pdb|1AQ3|A Chain A, Bacteriophage Ms2 Capsid ProteinRNA COMPLEX
 pdb|1AQ3|B Chain B, Bacteriophage Ms2 Capsid ProteinRNA COMPLEX
 pdb|1AQ3|C Chain C, Bacteriophage Ms2 Capsid ProteinRNA COMPLEX
          Length = 129

 Score = 30.4 bits (67), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMK---EIIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYSIKVEVPKVATQTVGGVELPVAAWRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|2VTU|J Chain J, Crystal Structure Of Bacteriophage Ms2 Covalent Coat
           Protein Dimer
 pdb|2VTU|L Chain L, Crystal Structure Of Bacteriophage Ms2 Covalent Coat
           Protein Dimer
 pdb|2WBH|A Chain A, Icosahedral Particle Of Covalent Coat Protein Dimer Of
           Bacteriophage Ms2
 pdb|2WBH|B Chain B, Icosahedral Particle Of Covalent Coat Protein Dimer Of
           Bacteriophage Ms2
 pdb|2WBH|C Chain C, Icosahedral Particle Of Covalent Coat Protein Dimer Of
           Bacteriophage Ms2
          Length = 257

 Score = 30.4 bits (67), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92



 Score = 30.4 bits (67), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++N 
Sbjct: 157 VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNM 216

Query: 224 ELVV 227
           EL +
Sbjct: 217 ELTI 220


>pdb|1MSC|A Chain A, Crystal Structure Of Ms2 Coat Protein Dimer
          Length = 129

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA R ++N 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAARRSYLNM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|1FRS|A Chain A, Crystal Structure Of Bacteriophage Fr Capsids At 3.5
           Angstroms Resolution
 pdb|1FRS|B Chain B, Crystal Structure Of Bacteriophage Fr Capsids At 3.5
           Angstroms Resolution
 pdb|1FRS|C Chain C, Crystal Structure Of Bacteriophage Fr Capsids At 3.5
           Angstroms Resolution
          Length = 129

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 160 ITPGLLFLYIAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPV 214
           + P      +A WI    RS  Y +  S  +  A      + ++VP  +  V  G   PV
Sbjct: 20  VAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSANNRKYTVKVEVPKVATQVQGGVELPV 79

Query: 215 AAYREFVNGELVV 227
           AA+R ++N EL +
Sbjct: 80  AAWRSYMNMELTI 92


>pdb|1ZSE|A Chain A, Rna Stemloop From Bacteriophage Qbeta Complexed With An
           N87s Mutant Ms2 Capsid
 pdb|1ZSE|B Chain B, Rna Stemloop From Bacteriophage Qbeta Complexed With An
           N87s Mutant Ms2 Capsid
 pdb|1ZSE|C Chain C, Rna Stemloop From Bacteriophage Qbeta Complexed With An
           N87s Mutant Ms2 Capsid
 pdb|2B2G|A Chain A, Ms2 Wild-Type Rna Stemloop Complexed With An N87s Mutant
           Ms2 Capsid
 pdb|2B2G|B Chain B, Ms2 Wild-Type Rna Stemloop Complexed With An N87s Mutant
           Ms2 Capsid
 pdb|2B2G|C Chain C, Ms2 Wild-Type Rna Stemloop Complexed With An N87s Mutant
           Ms2 Capsid
          Length = 129

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R +++ 
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLSM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|2BNY|A Chain A, Ms2 (N87a Mutant) - Rna Hairpin Complex
 pdb|2BNY|B Chain B, Ms2 (N87a Mutant) - Rna Hairpin Complex
 pdb|2BNY|C Chain C, Ms2 (N87a Mutant) - Rna Hairpin Complex
          Length = 129

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 169 IAGWIGWVGRS--YLIAISGEKKPAMKE---IIIDVPLASRLVFRGFSWPVAAYREFVNG 223
           +A WI    RS  Y +  S  +  A      I ++VP  +     G   PVAA+R ++  
Sbjct: 29  VAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLAM 88

Query: 224 ELVV 227
           EL +
Sbjct: 89  ELTI 92


>pdb|2KAA|A Chain A, Solution Structure Of Hirsutellin A From Hirsutella
           Thompsonii
          Length = 130

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 134 KYGLLCGSDGLPHLIVSGDQRHWGEFI---TPGLLFLYIAGWIG 174
           K GL  G  G PH   +GD   WG         +L+ Y   W+G
Sbjct: 30  KAGLTTGKSGDPHRYFAGDHIRWGVNNCDKADAILWEYPIYWVG 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,350,480
Number of Sequences: 62578
Number of extensions: 185450
Number of successful extensions: 305
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 16
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)