Query 026930
Match_columns 230
No_of_seqs 241 out of 1209
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2728 Uncharacterized conser 100.0 2.4E-63 5.3E-68 430.4 18.5 226 1-228 72-300 (302)
2 PF04127 DFP: DNA / pantothena 100.0 1E-32 2.2E-37 233.7 10.8 112 72-190 66-185 (185)
3 PRK09620 hypothetical protein; 100.0 5.6E-31 1.2E-35 229.6 18.3 143 67-221 67-223 (229)
4 PRK06732 phosphopantothenate-- 100.0 4E-30 8.8E-35 223.9 16.7 139 73-220 66-227 (229)
5 PRK13982 bifunctional SbtC-lik 100.0 2.5E-30 5.5E-35 245.4 14.8 142 68-220 315-469 (475)
6 TIGR00521 coaBC_dfp phosphopan 100.0 1.3E-29 2.8E-34 236.1 17.4 137 72-217 248-389 (390)
7 TIGR02114 coaB_strep phosphopa 100.0 5.5E-29 1.2E-33 216.6 18.0 143 68-219 60-225 (227)
8 PRK05579 bifunctional phosphop 100.0 2.8E-29 6.1E-34 234.5 14.9 142 70-221 249-397 (399)
9 COG0452 Dfp Phosphopantothenoy 99.9 8.6E-23 1.9E-27 190.6 13.1 143 69-221 243-391 (392)
10 PF07302 AroM: AroM protein; 55.8 28 0.00061 30.5 5.4 57 125-181 129-188 (221)
11 PF04413 Glycos_transf_N: 3-De 55.3 40 0.00088 28.3 6.2 105 63-180 22-127 (186)
12 PRK07791 short chain dehydroge 44.5 86 0.0019 27.4 6.8 35 66-103 70-104 (286)
13 cd09013 BphC-JF8_N_like N-term 44.3 52 0.0011 24.4 4.8 50 144-195 62-111 (121)
14 PRK07097 gluconate 5-dehydroge 42.0 96 0.0021 26.4 6.6 56 46-106 45-102 (265)
15 COG1533 SplB DNA repair photol 40.6 1.8E+02 0.0039 26.5 8.4 100 69-176 61-187 (297)
16 PRK08643 acetoin reductase; Va 35.9 1.2E+02 0.0026 25.4 6.3 39 64-105 55-93 (256)
17 PF00106 adh_short: short chai 35.9 97 0.0021 24.0 5.3 54 45-103 37-92 (167)
18 PRK06720 hypothetical protein; 32.8 1.7E+02 0.0037 23.9 6.4 37 67-106 72-108 (169)
19 TIGR01963 PHB_DH 3-hydroxybuty 30.2 1.8E+02 0.0039 24.1 6.4 37 65-104 55-91 (255)
20 PRK12939 short chain dehydroge 30.1 1.8E+02 0.0039 24.1 6.3 39 64-105 60-98 (250)
21 PRK13394 3-hydroxybutyrate deh 30.1 1.7E+02 0.0037 24.5 6.2 37 66-105 62-98 (262)
22 PRK08213 gluconate 5-dehydroge 29.9 1.6E+02 0.0036 24.7 6.1 39 64-105 65-103 (259)
23 PRK12937 short chain dehydroge 29.8 1.8E+02 0.004 24.0 6.3 38 65-105 60-97 (245)
24 PRK07035 short chain dehydroge 29.6 2E+02 0.0043 24.1 6.5 37 65-104 62-98 (252)
25 PRK05867 short chain dehydroge 28.9 1.8E+02 0.0039 24.5 6.1 36 67-105 65-100 (253)
26 cd05805 MPG1_transferase GTP-m 27.7 4.8E+02 0.01 24.6 9.3 36 158-195 215-250 (441)
27 PRK06194 hypothetical protein; 26.5 2E+02 0.0043 24.6 6.1 37 66-105 61-97 (287)
28 PRK07063 short chain dehydroge 25.3 2.1E+02 0.0045 24.1 6.0 39 65-106 63-101 (260)
29 PRK07478 short chain dehydroge 25.2 2.6E+02 0.0057 23.4 6.5 34 68-104 63-96 (254)
30 PRK12826 3-ketoacyl-(acyl-carr 25.0 2.2E+02 0.0048 23.5 5.9 39 65-106 60-98 (251)
31 TIGR02415 23BDH acetoin reduct 24.9 2.4E+02 0.0052 23.5 6.2 37 65-104 54-90 (254)
32 PRK07109 short chain dehydroge 24.8 2.3E+02 0.0049 25.6 6.3 36 68-106 65-100 (334)
33 PF05952 ComX: Bacillus compet 24.7 33 0.00072 23.8 0.7 24 127-153 9-32 (57)
34 PF06162 DUF976: Caenorhabditi 24.6 2.7E+02 0.0059 23.5 6.1 60 129-191 40-101 (166)
35 PRK06114 short chain dehydroge 24.4 2.4E+02 0.0053 23.7 6.2 37 67-106 65-101 (254)
36 PRK05876 short chain dehydroge 24.3 2.4E+02 0.0052 24.4 6.3 37 66-105 61-97 (275)
37 PF13561 adh_short_C2: Enoyl-( 24.2 3.2E+02 0.007 22.8 6.9 40 62-104 46-86 (241)
38 PF07993 NAD_binding_4: Male s 23.8 73 0.0016 27.3 2.8 21 91-111 87-107 (249)
39 COG4996 Predicted phosphatase 23.8 2.2E+02 0.0047 23.6 5.3 66 100-173 16-81 (164)
40 PRK12745 3-ketoacyl-(acyl-carr 23.6 2.4E+02 0.0051 23.5 5.9 37 64-103 56-92 (256)
41 PRK07062 short chain dehydroge 23.5 2.1E+02 0.0046 24.2 5.6 35 68-105 67-101 (265)
42 PRK09242 tropinone reductase; 23.2 2.8E+02 0.006 23.3 6.3 38 66-106 66-103 (257)
43 PRK08251 short chain dehydroge 23.1 2.2E+02 0.0047 23.7 5.6 38 66-106 59-96 (248)
44 cd08344 MhqB_like_N N-terminal 23.0 3E+02 0.0065 19.9 6.1 45 147-195 58-102 (112)
45 PRK06124 gluconate 5-dehydroge 22.9 3.1E+02 0.0067 22.9 6.5 35 68-105 68-102 (256)
46 PF02879 PGM_PMM_II: Phosphogl 22.8 1.6E+02 0.0035 21.7 4.2 34 159-194 71-104 (104)
47 PRK08063 enoyl-(acyl carrier p 22.8 2.8E+02 0.0061 23.0 6.2 36 68-106 62-97 (250)
48 PRK07523 gluconate 5-dehydroge 22.7 2.8E+02 0.006 23.3 6.2 35 67-104 66-100 (255)
49 PRK06138 short chain dehydroge 22.5 2.8E+02 0.0061 22.9 6.1 38 65-105 58-95 (252)
50 PRK07984 enoyl-(acyl carrier p 22.3 2E+02 0.0042 24.9 5.3 37 64-103 60-96 (262)
51 PF08747 DUF1788: Domain of un 22.3 47 0.001 26.5 1.2 18 3-20 62-79 (126)
52 smart00822 PKS_KR This enzymat 22.1 1.8E+02 0.0039 22.0 4.5 37 67-106 60-96 (180)
53 PTZ00150 phosphoglucomutase-2- 22.1 3E+02 0.0064 27.4 7.0 57 158-220 282-338 (584)
54 PRK08589 short chain dehydroge 22.1 2.6E+02 0.0056 24.0 6.0 35 66-103 60-94 (272)
55 PRK12743 oxidoreductase; Provi 21.9 3E+02 0.0065 23.2 6.3 39 64-105 56-94 (256)
56 COG1986 Inosine/xanthosine tri 21.8 1.8E+02 0.0039 24.7 4.6 57 159-218 53-117 (175)
57 KOG2792 Putative cytochrome C 21.7 2.2E+02 0.0049 25.8 5.4 85 122-219 179-277 (280)
58 PRK07666 fabG 3-ketoacyl-(acyl 21.5 3.1E+02 0.0067 22.6 6.2 37 65-104 61-97 (239)
59 cd07261 Glo_EDI_BRP_like_11 Th 21.2 3.2E+02 0.0069 19.5 5.7 50 144-195 59-108 (114)
60 PRK01033 imidazole glycerol ph 20.6 2.2E+02 0.0048 24.9 5.3 56 127-182 106-176 (258)
61 PRK06181 short chain dehydroge 20.6 3.2E+02 0.0069 22.9 6.1 37 66-105 56-92 (263)
62 PRK07774 short chain dehydroge 20.5 2.9E+02 0.0063 22.9 5.8 36 65-103 60-95 (250)
63 cd07255 Glo_EDI_BRP_like_12 Th 20.4 3.4E+02 0.0074 19.6 6.3 68 123-195 45-112 (125)
64 TIGR00735 hisF imidazoleglycer 20.4 2.7E+02 0.0058 24.2 5.7 54 128-182 107-179 (254)
65 PF01073 3Beta_HSD: 3-beta hyd 20.3 78 0.0017 28.1 2.3 30 70-106 52-81 (280)
66 PRK07024 short chain dehydroge 20.2 2.3E+02 0.005 23.9 5.2 39 64-105 54-92 (257)
67 PRK08085 gluconate 5-dehydroge 20.1 3.5E+02 0.0076 22.6 6.3 34 72-105 67-100 (254)
68 PRK08628 short chain dehydroge 20.1 3.2E+02 0.007 22.8 6.1 36 65-103 60-95 (258)
No 1
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=100.00 E-value=2.4e-63 Score=430.38 Aligned_cols=226 Identities=45% Similarity=0.664 Sum_probs=207.5
Q ss_pred CCeEEEEEecCCCCccccccCCCCcccccccccCC---CceEEcCcchHHHHHHHHHHHHHhhCCcccccccccHHHHHH
Q 026930 1 MGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEE---SAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQ 77 (230)
Q Consensus 1 ~gyaVifl~R~~s~~Pf~r~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~i~f~tv~~y~~ 77 (230)
+||+||||||++|++||+|||++..++++|+.++. +.|...+...+.+.+++..|+.+...++|+.+||+|+.+|++
T Consensus 72 agYaVIFl~R~~Sl~Py~R~f~~~~~~~~l~~~g~~~~~~i~~~e~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~ 151 (302)
T KOG2728|consen 72 AGYAVIFLYRERSLFPYTRHFPGQTWFLFLRPSGSALSGLIEKEENALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLW 151 (302)
T ss_pred CCceEEEEeeccccccccccCCCchhhhhhccCCcccccceecCchhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHH
Confidence 69999999999999999999999999999998543 335555666778999999999988899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEeeccChH
Q 026930 78 MLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAE 157 (230)
Q Consensus 78 ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd~~ 157 (230)
+|+++|++|+.++++.|+|+||||||||+|+++|++|||+|++++|+|+|.++||+|..|+..|.|++|+||||||||+.
T Consensus 152 ~L~aiae~Ln~~~sramfYLAAAVSDFyVP~~~mpeHKIqSg~~~l~i~l~~VPK~L~~Lv~~WaP~AfiiSFKLETDes 231 (302)
T KOG2728|consen 152 LLRAIAEALNPLGSRAMFYLAAAVSDFYVPESEMPEHKIQSGSGPLQITLKPVPKMLSPLVSDWAPKAFIISFKLETDES 231 (302)
T ss_pred HHHHHHHHhccccchHHHHHHHHhcccccChhhcchhhcccCCCCceEEeccchHHHHHHHHhhCcceEEEEEEecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHHHHHHHhhc
Q 026930 158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDS 228 (230)
Q Consensus 158 ~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l~~~~~~~i~~~ 228 (230)
+|+.||+++|++|+|++||||.|++|+.+|++|+++...++....+ ..-|++.|++.+.++|.+||..+
T Consensus 232 iLi~KAr~AL~kY~HqlVIAN~LsTRk~~V~fVt~~~~~~~~l~~~--~~~IE~~ii~~vv~rH~~~I~~a 300 (302)
T KOG2728|consen 232 ILINKARKALEKYKHQLVIANLLSTRKSRVVFVTKNIVQWLELDKA--PGAIEDSIIKLVVSRHKEFIDEA 300 (302)
T ss_pred HHHHHHHHHHHHhCceeeeeehhhhcceeEEEEecCcceeeecccc--cchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999876655544332 24599999999999999999854
No 2
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=99.98 E-value=1e-32 Score=233.67 Aligned_cols=112 Identities=33% Similarity=0.479 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccC-CCCCceEEEEcCchHHHHHhhhcCCceEEEEE
Q 026930 72 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS-GSGPLDMQLLQVPKMLSVLRKEWAPMAFCISF 150 (230)
Q Consensus 72 v~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks-~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgF 150 (230)
+.++.+|++++ .+.++.+|++|||||||||+| +...++||+| +++.++|+|.+|||||+.|++.|.|++++|||
T Consensus 66 v~sa~em~~~~---~~~~~~~Di~I~aAAVsDf~p--~~~~~~KIkK~~~~~l~l~L~~~pkIL~~l~~~~~~~~~lVGF 140 (185)
T PF04127_consen 66 VESAEEMLEAV---KELLPSADIIIMAAAVSDFRP--EEPAEGKIKKSSGDELTLELKPTPKILAELRKNKKPNQFLVGF 140 (185)
T ss_dssp -SSHHHHHHHH---HHHGGGGSEEEE-SB--SEEE--SCHHSS-G---TT-CEEEEEEE-GGHGCCHHHHCSTTTEEEEE
T ss_pred ecchhhhhhhh---ccccCcceeEEEecchhheee--hhccccccccccCcceEEEEEeChHHHHHHHhcccCCcEEEEE
Confidence 44455556666 344567799999999999999 8889999996 44689999999999999998889999999999
Q ss_pred eeccChHHHHHHHHHHHHHhCCCEEEeecccC-------CceEEEEE
Q 026930 151 KLETDAEILLEKADMARKKYGMHAVVANELLS-------RKEQVVVV 190 (230)
Q Consensus 151 klETd~~~li~~A~~kL~~~~~D~VVaN~l~~-------~~n~v~lv 190 (230)
||||+ +++++|+++|++||||+||||+++. +.|+|+||
T Consensus 141 kaEt~--~l~~~A~~kl~~k~~D~IVaN~~~~~~~gfg~~~n~~~ii 185 (185)
T PF04127_consen 141 KAETE--ELIENAKEKLERKGADLIVANDLSQRGSGFGSDTNEVTII 185 (185)
T ss_dssp EEESC--HHHHHHHHHHHHCT-SEEEEEEGCCCTSSSSSSEEEEEE-
T ss_pred EecCC--cHHHHHHHHhHhhCCCEEEEeCCCcCCCCcCCCceEEEEC
Confidence 99997 4999999999999999999999985 57999886
No 3
>PRK09620 hypothetical protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=229.61 Aligned_cols=143 Identities=26% Similarity=0.352 Sum_probs=113.9
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCcccc---------ccCccCCCCCceEEEEcCchHHHHH
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMA---------EHKIQSGSGPLDMQLLQVPKMLSVL 137 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~---------~~KIks~~~~l~L~L~~~PkiL~~l 137 (230)
+++.+..++.+.++.+ +.. ...|++||+||||||+| +... ++||+|+ +.++|+|++|||||+.+
T Consensus 67 ~~V~s~~d~~~~l~~~---~~~-~~~D~VIH~AAvsD~~~--~~~~~~~~~~~~~~~Ki~~~-~~~~l~L~~~pdIl~~l 139 (229)
T PRK09620 67 HPFEGIIDLQDKMKSI---ITH-EKVDAVIMAAAGSDWVV--DKICDQEGNVLDMNGKISSD-IAPIIHFQKAPKVLKQI 139 (229)
T ss_pred EEEecHHHHHHHHHHH---hcc-cCCCEEEECccccceec--ccccccccccccccCCCcCC-CCCeEEEEECcHHHHHH
Confidence 3455544544433333 321 35799999999999999 4333 3599885 56899999999999999
Q ss_pred hhhcCCceEEEEEeeccCh--HHHHHHHHHHHHHhCCCEEEeecccC---CceEEEEEeCCCeeeecCCCCCChHHHHHH
Q 026930 138 RKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELLS---RKEQVVVVTNNGKIPVYRDKTSSDSDVEKP 212 (230)
Q Consensus 138 ~~~~~p~~~vVgFklETd~--~~li~~A~~kL~~~~~D~VVaN~l~~---~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~ 212 (230)
++ |.|++++|||||||+. ++|+++|+++|++|+|||||||+++. ..++++||++++.. .+.++| .+||..
T Consensus 140 ~~-~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~-~~~~~K---~~iA~~ 214 (229)
T PRK09620 140 KQ-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKG-QLCNGK---DETAKE 214 (229)
T ss_pred Hh-hCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCcc-ccCCCH---HHHHHH
Confidence 85 6788999999999984 67999999999999999999999953 44689999998753 466888 999999
Q ss_pred HHHHHHHHH
Q 026930 213 LTKLLVDRH 221 (230)
Q Consensus 213 Iv~~l~~~~ 221 (230)
|++++.++.
T Consensus 215 i~~~i~~~~ 223 (229)
T PRK09620 215 IVKRLEVLC 223 (229)
T ss_pred HHHHHHHhh
Confidence 999997754
No 4
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=99.97 E-value=4e-30 Score=223.93 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCc------------------cccccCccCCCCCceEEEEcCchHH
Q 026930 73 FEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK------------------SMAEHKIQSGSGPLDMQLLQVPKML 134 (230)
Q Consensus 73 ~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~------------------~~~~~KIks~~~~l~L~L~~~PkiL 134 (230)
.+..+|.+.+ .+.++..|++||+|||+||.+... .++++||+|+++.++|+|.+|||||
T Consensus 66 ~s~~~m~~~l---~~~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il 142 (229)
T PRK06732 66 ENVDDLLETL---EPLVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLTKQNTEAKISSASDYQVLFLKKTPKVI 142 (229)
T ss_pred ecHHHHHHHH---HHHhcCCCEEEeCCccCCceehhhhhhhhhhhhhhhhhhhccccccCCccCCCCceEEEEEEChHHH
Confidence 3444555555 333467899999999999987221 1258999998777999999999999
Q ss_pred HHHhhhcCCceEEEEEeeccC--hHHHHHHHHHHHHHhCCCEEEeecccC---CceEEEEEeCCCeeeecCCCCCChHHH
Q 026930 135 SVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGMHAVVANELLS---RKEQVVVVTNNGKIPVYRDKTSSDSDV 209 (230)
Q Consensus 135 ~~l~~~~~p~~~vVgFklETd--~~~li~~A~~kL~~~~~D~VVaN~l~~---~~n~v~lv~~~~~~~i~~~~K~~~~eI 209 (230)
+.+++ |.|++++|||||||+ .++|+++|+++|++|||||||||+++. +.|+++|+++++. .+.++| .+|
T Consensus 143 ~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~--~~~~~K---~~~ 216 (229)
T PRK06732 143 SYVKK-WNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEV--YTAQTK---EEI 216 (229)
T ss_pred HHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCe--eeCCCH---HHH
Confidence 99985 779999999999997 467999999999999999999999964 7899999999985 466888 999
Q ss_pred HHHHHHHHHHH
Q 026930 210 EKPLTKLLVDR 220 (230)
Q Consensus 210 a~~Iv~~l~~~ 220 (230)
|+.|++++.+.
T Consensus 217 a~~i~~~~~~~ 227 (229)
T PRK06732 217 ADLLLERIEKY 227 (229)
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 5
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=99.97 E-value=2.5e-30 Score=245.40 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=122.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCC-CCceEEEEcCchHHHHHhhhc-CCce
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-GPLDMQLLQVPKMLSVLRKEW-APMA 145 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~-~~l~L~L~~~PkiL~~l~~~~-~p~~ 145 (230)
.+..|++..+|++++ .+.++ +|++|||||||||+| .+..++||||++ +.++|+|++|||||+.|++.. .+.+
T Consensus 315 ~~i~V~ta~eM~~av---~~~~~-~Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~~~~~~~~ 388 (475)
T PRK13982 315 KVIHVESARQMLAAV---EAALP-ADIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDILATISKLAENRPP 388 (475)
T ss_pred eEEEecCHHHHHHHH---HhhCC-CCEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHHHHHhhhcccCCC
Confidence 346788999999999 44454 799999999999999 778899999864 457999999999999999632 2236
Q ss_pred EEEEEeeccChHHHHHHHHHHHHHhCCCEEEeeccc-------CCceEEEEEeCCCe----eeecCCCCCChHHHHHHHH
Q 026930 146 FCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGK----IPVYRDKTSSDSDVEKPLT 214 (230)
Q Consensus 146 ~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~-------~~~n~v~lv~~~~~----~~i~~~~K~~~~eIa~~Iv 214 (230)
++|||||||++ ++++|++||++|||||||||+++ ++.|+|+|++++|. +.++.++| .+||+.|+
T Consensus 389 ~lVGFaaEt~~--l~~~A~~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~sK---~~iA~~Il 463 (475)
T PRK13982 389 LVIGFAAETEH--LIDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMTK---DEVATALV 463 (475)
T ss_pred EEEEEccCchh--HHHHHHHHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCCH---HHHHHHHH
Confidence 99999999976 99999999999999999999995 37899999999872 57788899 99999999
Q ss_pred HHHHHH
Q 026930 215 KLLVDR 220 (230)
Q Consensus 215 ~~l~~~ 220 (230)
|++.+.
T Consensus 464 ~~i~~~ 469 (475)
T PRK13982 464 ARIAST 469 (475)
T ss_pred HHHHHH
Confidence 999754
No 6
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=99.97 E-value=1.3e-29 Score=236.14 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEe
Q 026930 72 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFK 151 (230)
Q Consensus 72 v~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFk 151 (230)
|.+..+|++++.+ ...+..|++|+|||||||+| ....++||+|.+++++|+|.+|||||+.|++.| |++++||||
T Consensus 248 v~~~~~~~~~~~~--~~~~~~D~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~-~~~~lvgF~ 322 (390)
T TIGR00521 248 VSTAEEMLEAALN--ELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK-KHQVIVGFK 322 (390)
T ss_pred eccHHHHHHHHHH--hhcccCCEEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHHHHhhC-CCcEEEEEE
Confidence 4455555555521 23467899999999999999 667899999965679999999999999999765 578999999
Q ss_pred eccChHHHHHHHHHHHHHhCCCEEEeecccC-----CceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHH
Q 026930 152 LETDAEILLEKADMARKKYGMHAVVANELLS-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL 217 (230)
Q Consensus 152 lETd~~~li~~A~~kL~~~~~D~VVaN~l~~-----~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l 217 (230)
|||+.+ ++++|++||++||||+||||+++. ++|+++||+++|...++.++| .+||+.|++++
T Consensus 323 aEt~~~-l~~~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K---~~iA~~i~~~~ 389 (390)
T TIGR00521 323 AETNDD-LIKYAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSK---LEVAERILDEI 389 (390)
T ss_pred cCCCcH-HHHHHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCH---HHHHHHHHHHh
Confidence 999866 999999999999999999999974 789999999998778888999 99999999986
No 7
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=99.96 E-value=5.5e-29 Score=216.57 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=121.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCc------------------cccccCccCCCCCceEEEEc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK------------------SMAEHKIQSGSGPLDMQLLQ 129 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~------------------~~~~~KIks~~~~l~L~L~~ 129 (230)
....+++..+|++.+ .+.++..|++|++|||+||.|... +..++||+|+++.++|+|.+
T Consensus 60 Dv~d~~s~~~l~~~v---~~~~g~iDiLVnnAgv~d~~~~~~~s~e~~~~~~~~~~~~~~~~~~~Ki~~~~~~~~l~l~~ 136 (227)
T TIGR02114 60 SIREIETTKDLLITL---KELVQEHDILIHSMAVSDYTPVYMTDLEQVQASDNLNEFLSKQNHEAKISSTSEYQVLFLKK 136 (227)
T ss_pred eeecHHHHHHHHHHH---HHHcCCCCEEEECCEeccccchhhCCHHHHhhhcchhhhhccccccCCcccCCCceeEEEEE
Confidence 455677777888877 566788899999999999987221 12479999986678999999
Q ss_pred CchHHHHHhhhcCCceEEEEEeeccC--hHHHHHHHHHHHHHhCCCEEEeeccc---CCceEEEEEeCCCeeeecCCCCC
Q 026930 130 VPKMLSVLRKEWAPMAFCISFKLETD--AEILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS 204 (230)
Q Consensus 130 ~PkiL~~l~~~~~p~~~vVgFklETd--~~~li~~A~~kL~~~~~D~VVaN~l~---~~~n~v~lv~~~~~~~i~~~~K~ 204 (230)
|||||+.+++ |.|++++|||||||+ .++|+++|+++|++|||||||||+++ ++.|+++|+++++. ++..+|
T Consensus 137 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~~--~~~~~k- 212 (227)
T TIGR02114 137 TPKVISLVKE-WNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQV--QTAQTK- 212 (227)
T ss_pred ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCCe--eecCCH-
Confidence 9999999995 668899999999986 46799999999999999999999994 58999999999973 566888
Q ss_pred ChHHHHHHHHHHHHH
Q 026930 205 SDSDVEKPLTKLLVD 219 (230)
Q Consensus 205 ~~~eIa~~Iv~~l~~ 219 (230)
.+||..|++++.+
T Consensus 213 --~~ia~~i~~~~~~ 225 (227)
T TIGR02114 213 --EEIAELLYEKVQK 225 (227)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999999864
No 8
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=99.96 E-value=2.8e-29 Score=234.51 Aligned_cols=142 Identities=25% Similarity=0.399 Sum_probs=122.0
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEE
Q 026930 70 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCIS 149 (230)
Q Consensus 70 ~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVg 149 (230)
..|.+..+|.+++ .+.++..|++|++|||+||+| ....++||||+++.++|+|++|||||+.|++.+.+.+++||
T Consensus 249 ~dv~~~~~~~~~v---~~~~~~~DilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~~~~~~VG 323 (399)
T PRK05579 249 IDVESAQEMLDAV---LAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVAALKDKRPFVVG 323 (399)
T ss_pred EccCCHHHHHHHH---HHhcCCCCEEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHHHhccCCCCEEEE
Confidence 3455666677777 445788999999999999999 88899999997557999999999999999976533349999
Q ss_pred EeeccChHHHHHHHHHHHHHhCCCEEEeeccc------CCceEEEEEeCCCe-eeecCCCCCChHHHHHHHHHHHHHHH
Q 026930 150 FKLETDAEILLEKADMARKKYGMHAVVANELL------SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLTKLLVDRH 221 (230)
Q Consensus 150 FklETd~~~li~~A~~kL~~~~~D~VVaN~l~------~~~n~v~lv~~~~~-~~i~~~~K~~~~eIa~~Iv~~l~~~~ 221 (230)
|||||++ ++++|++||++|||||||||+++ +++|+++|+++++. ..++.++| .+||+.|++++.++.
T Consensus 324 FaaEt~~--~~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K---~~iA~~i~~~i~~~~ 397 (399)
T PRK05579 324 FAAETGD--VLEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSK---LELARRLLDEIAERL 397 (399)
T ss_pred EccCCch--HHHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCH---HHHHHHHHHHHHHHh
Confidence 9999997 89999999999999999999994 47899999998874 46888899 999999999997654
No 9
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=99.89 E-value=8.6e-23 Score=190.56 Aligned_cols=143 Identities=20% Similarity=0.364 Sum_probs=127.8
Q ss_pred cccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEE
Q 026930 69 FTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCI 148 (230)
Q Consensus 69 f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vV 148 (230)
...+.+..+|.+++ +......|+++++|||+||+| ...+++||+|..+++.|+|.+|||||..++..+.+..++|
T Consensus 243 ~v~v~sa~em~~av---~~~~~~~d~~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~~~~~~~~~~~V 317 (392)
T COG0452 243 VVKVESAEEMLNAV---LEAALPADIFISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASVARDYPKKNILV 317 (392)
T ss_pred eeeeeeHHHHHHHH---HhcccccCEEEEecccccccc--ccccccceeecCCcceEEeccChhHHHHHHhhccCCCeEE
Confidence 44688899999999 455667999999999999999 7789999999777799999999999999998764434899
Q ss_pred EEeeccChHHHHHHHHHHHHHhCCCEEEeeccc-----CCceEEEEEeCCCe-eeecCCCCCChHHHHHHHHHHHHHHH
Q 026930 149 SFKLETDAEILLEKADMARKKYGMHAVVANELL-----SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLTKLLVDRH 221 (230)
Q Consensus 149 gFklETd~~~li~~A~~kL~~~~~D~VVaN~l~-----~~~n~v~lv~~~~~-~~i~~~~K~~~~eIa~~Iv~~l~~~~ 221 (230)
||++||+. ++++|+++|+++++|+||+|+++ ++.|++++++++|. ..++.++| .++|+.|++.+.+++
T Consensus 318 gfaaet~~--~~~~a~~kl~~k~~D~i~aNdv~~~~fg~d~n~~~~~~~d~~~~~~~~~~k---~~~a~~i~~~i~~~~ 391 (392)
T COG0452 318 GFAAETGD--IVEYAREKLERKNLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSK---EELAERILDEIAELL 391 (392)
T ss_pred EEeccchH--HHHHHHHhhhhcCCCeEEeccccccCCCCCccceEEecCCCCeeeccccCH---HHHHHHHHHHHHHhh
Confidence 99999999 99999999999999999999998 48999999999775 78899999 999999999998764
No 10
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=55.76 E-value=28 Score=30.54 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=42.0
Q ss_pred EEEEcCchHHHHHhhhcCCceEEEEEeecc---ChHHHHHHHHHHHHHhCCCEEEeeccc
Q 026930 125 MQLLQVPKMLSVLRKEWAPMAFCISFKLET---DAEILLEKADMARKKYGMHAVVANELL 181 (230)
Q Consensus 125 L~L~~~PkiL~~l~~~~~p~~~vVgFklET---d~~~li~~A~~kL~~~~~D~VVaN~l~ 181 (230)
--+.|.|+-+....++|.+-..-+.|.+-+ +.++-+..|-+.|...|+|+||..-++
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 357899999999999997654445555554 334455666677888999999998775
No 11
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=55.27 E-value=40 Score=28.29 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=51.0
Q ss_pred cccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcC
Q 026930 63 LLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWA 142 (230)
Q Consensus 63 ~ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~ 142 (230)
.++-+.-.||.|+..+...+.+..+..++..+++-+--.+.+.. ...++...-.-.-+.+. .|-..+.+-+.|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~-----~~~~~~~~v~~~~~P~D-~~~~~~rfl~~~~ 95 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREM-----ARKLLPDRVDVQYLPLD-FPWAVRRFLDHWR 95 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHH-----HHGG-GGG-SEEE---S-SHHHHHHHHHHH-
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHH-----HHHhCCCCeEEEEeCcc-CHHHHHHHHHHhC
Confidence 67777888899888888777666666667777766654444443 22222221111123332 5677777777899
Q ss_pred CceEEEEEeeccCh-HHHHHHHHHHHHHhCCCEEEeecc
Q 026930 143 PMAFCISFKLETDA-EILLEKADMARKKYGMHAVVANEL 180 (230)
Q Consensus 143 p~~~vVgFklETd~-~~li~~A~~kL~~~~~D~VVaN~l 180 (230)
|+.+++ +||+- -.|+. .+.+.|+-+++.|--
T Consensus 96 P~~~i~---~EtElWPnll~----~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 96 PDLLIW---VETELWPNLLR----EAKRRGIPVVLVNAR 127 (186)
T ss_dssp -SEEEE---ES----HHHHH----H-----S-EEEEEE-
T ss_pred CCEEEE---EccccCHHHHH----HHhhcCCCEEEEeee
Confidence 987655 78872 22444 445678999999943
No 12
>PRK07791 short chain dehydrogenase; Provisional
Probab=44.47 E-value=86 Score=27.41 Aligned_cols=35 Identities=6% Similarity=-0.000 Sum_probs=24.7
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
.......++...+++.+ .+.++.-|++|++|++..
T Consensus 70 ~~Dv~~~~~v~~~~~~~---~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 70 GDDIADWDGAANLVDAA---VETFGGLDVLVNNAGILR 104 (286)
T ss_pred eCCCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCC
Confidence 34455556666666655 667788999999999864
No 13
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=44.33 E-value=52 Score=24.38 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=34.2
Q ss_pred ceEEEEEeeccChHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCe
Q 026930 144 MAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 195 (230)
Q Consensus 144 ~~~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~ 195 (230)
+..-++|.+++.+ -++.+.+.|+++|++......-....+.+++.+++|.
T Consensus 62 ~~~h~af~v~~~~--~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 111 (121)
T cd09013 62 GLGHIAWRASSPE--ALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGH 111 (121)
T ss_pred ceEEEEEEcCCHH--HHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCC
Confidence 3456889888665 6788889999999986433321223457788888874
No 14
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=41.98 E-value=96 Score=26.41 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhCCccc--ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 46 EAVKRAIRDHHAAVAGGLLL--KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 46 ~~~~~~~~~y~~~~~~~~ll--~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
+.+.+....+.+. ++++. ....++-++...+.+.+ .+.++..|++|++|++++..+
T Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~---~~~~~~id~li~~ag~~~~~~ 102 (265)
T PRK07097 45 ELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQI---EKEVGVIDILVNNAGIIKRIP 102 (265)
T ss_pred HHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH---HHhCCCCCEEEECCCCCCCCC
Confidence 3444444444432 22333 33444444444444444 666788899999999988654
No 15
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=40.64 E-value=1.8e+02 Score=26.47 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=59.6
Q ss_pred cccHHH-HHHHHHHHHHHhhhcCCCCeEEEeeeccCcccCCccccccCcc--------CCCCCceEEEEcCc-----hHH
Q 026930 69 FTTIFE-YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQ--------SGSGPLDMQLLQVP-----KML 134 (230)
Q Consensus 69 f~tv~~-y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~p~~~~~~~KIk--------s~~~~l~L~L~~~P-----kiL 134 (230)
+..+.+ ..+.|+.- +..-+..-..|...++||=|.|.+. ++++. ..+.+++|.=+... |+|
T Consensus 61 ~v~vk~n~~e~l~~e---l~~~~~k~~~i~is~~TDpyqp~E~--~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l 135 (297)
T COG1533 61 KVNVKENLLELLERE---LRKPGPKRTVIAISSVTDPYQPIEK--EYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLL 135 (297)
T ss_pred eeeechhHHHHHHHH---HhhccCCceEEEEecCCCCCCcchH--HHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHH
Confidence 444555 55555544 5432455667888899999987542 23332 22234444333222 777
Q ss_pred HHHhhhcCCceEEEEEeeccChHHHH-------------HHHHHHHHHhCCCEEE
Q 026930 135 SVLRKEWAPMAFCISFKLETDAEILL-------------EKADMARKKYGMHAVV 176 (230)
Q Consensus 135 ~~l~~~~~p~~~vVgFklETd~~~li-------------~~A~~kL~~~~~D~VV 176 (230)
..+.. ++...|+|...|+++.+. =+|-++|.+.|....|
T Consensus 136 ~~~~~---~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v 187 (297)
T COG1533 136 LELAE---RGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL 187 (297)
T ss_pred Hhhhh---ccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEE
Confidence 77764 455789999999754332 2467788888887644
No 16
>PRK08643 acetoin reductase; Validated
Probab=35.94 E-value=1.2e+02 Score=25.45 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=28.0
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.+....+.-++...+++.+ .+.++..|++|++|++....
T Consensus 55 ~~~~Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~ 93 (256)
T PRK08643 55 AVKADVSDRDQVFAAVRQV---VDTFGDLNVVVNNAGVAPTT 93 (256)
T ss_pred EEECCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 3455666677777777666 56678899999999876544
No 17
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=35.90 E-value=97 Score=24.01 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhhCCcccc--cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 45 SEAVKRAIRDHHAAVAGGLLLK--LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 45 ~~~~~~~~~~y~~~~~~~~ll~--i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
.+.......+++.. +.++.. ..+.+-++...+++.+ ....+..|++|++|.+..
T Consensus 37 ~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 37 SEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEV---IKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHH---HHHHSSESEEEEECSCTT
T ss_pred cccccccccccccc--cccccccccccccccccccccccc---cccccccccccccccccc
Confidence 45556666666633 243343 3456666666666666 566788999999999877
No 18
>PRK06720 hypothetical protein; Provisional
Probab=32.76 E-value=1.7e+02 Score=23.92 Aligned_cols=37 Identities=5% Similarity=0.157 Sum_probs=23.9
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
......++...+.+.+ ++.++..|++|++|.+....+
T Consensus 72 ~Dl~~~~~v~~~v~~~---~~~~G~iDilVnnAG~~~~~~ 108 (169)
T PRK06720 72 YDMEKQGDWQRVISIT---LNAFSRIDMLFQNAGLYKIDS 108 (169)
T ss_pred ccCCCHHHHHHHHHHH---HHHcCCCCEEEECCCcCCCCC
Confidence 3334445555555544 677888999999998755443
No 19
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=30.18 E-value=1.8e+02 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=26.0
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
....+...++....++.+ .+.++..|++||+|+++..
T Consensus 55 ~~~D~~~~~~~~~~~~~~---~~~~~~~d~vi~~a~~~~~ 91 (255)
T TIGR01963 55 LVADVTKEDEIADMIAAA---AAEFGGLDILVNNAGIQHV 91 (255)
T ss_pred EECCCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCCC
Confidence 445666666666666666 4556778999999998754
No 20
>PRK12939 short chain dehydrogenase; Provisional
Probab=30.12 E-value=1.8e+02 Score=24.06 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=27.6
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.+...+.+.++...+++.+ .+.++..|++|++|++.+..
T Consensus 60 ~~~~Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~ 98 (250)
T PRK12939 60 AIAADLADPASVQRFFDAA---AAALGGLDGLVNNAGITNSK 98 (250)
T ss_pred EEEccCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 3455666666666666666 55567889999999987653
No 21
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.08 E-value=1.7e+02 Score=24.48 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=24.0
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
...+.+..+....++.+ ...++..|++||+|++..+.
T Consensus 62 ~~Dl~~~~~~~~~~~~~---~~~~~~~d~vi~~ag~~~~~ 98 (262)
T PRK13394 62 AMDVTNEDAVNAGIDKV---AERFGSVDILVSNAGIQIVN 98 (262)
T ss_pred ECCCCCHHHHHHHHHHH---HHHcCCCCEEEECCccCCCC
Confidence 34455555554544444 55678889999999987543
No 22
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=29.87 E-value=1.6e+02 Score=24.74 Aligned_cols=39 Identities=5% Similarity=-0.040 Sum_probs=27.7
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.+...+++.++...+++.+ .+.++..|.+||+|++++..
T Consensus 65 ~~~~Dl~d~~~i~~~~~~~---~~~~~~id~vi~~ag~~~~~ 103 (259)
T PRK08213 65 WIAADVADEADIERLAEET---LERFGHVDILVNNAGATWGA 103 (259)
T ss_pred EEEccCCCHHHHHHHHHHH---HHHhCCCCEEEECCCCCCCC
Confidence 4555666677766666666 55567789999999987543
No 23
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.80 E-value=1.8e+02 Score=23.98 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=26.6
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
........++...+++.+ .+.++..|++|++|++....
T Consensus 60 ~~~Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~ 97 (245)
T PRK12937 60 VQADVADAAAVTRLFDAA---ETAFGRIDVLVNNAGVMPLG 97 (245)
T ss_pred EECCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 344556666666666665 66678899999999986543
No 24
>PRK07035 short chain dehydrogenase; Provisional
Probab=29.64 E-value=2e+02 Score=24.05 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=25.1
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
+.....+.++...+++.+ .+.++..|++|++|++..+
T Consensus 62 ~~~D~~~~~~~~~~~~~~---~~~~~~id~li~~ag~~~~ 98 (252)
T PRK07035 62 LACHIGEMEQIDALFAHI---RERHGRLDILVNNAAANPY 98 (252)
T ss_pred EEcCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCcCCC
Confidence 444555556665666555 6667888999999987543
No 25
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.95 E-value=1.8e+02 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=24.4
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
..+++-++...+++.+ .+.++..|++|++|++..+.
T Consensus 65 ~D~~~~~~~~~~~~~~---~~~~g~id~lv~~ag~~~~~ 100 (253)
T PRK05867 65 CDVSQHQQVTSMLDQV---TAELGGIDIAVCNAGIITVT 100 (253)
T ss_pred ccCCCHHHHHHHHHHH---HHHhCCCCEEEECCCCCCCC
Confidence 3445555555555554 66678899999999987544
No 26
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=27.74 E-value=4.8e+02 Score=24.61 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCe
Q 026930 158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 195 (230)
Q Consensus 158 ~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~ 195 (230)
+-++.+++..++.++|+.+|++-+ -.++.+++.+|.
T Consensus 215 ~~l~~l~~~v~~~~adlgia~DgD--aDR~~vvd~~G~ 250 (441)
T cd05805 215 RSLDRLGRIVKALGADFGVIIDPN--GERLILVDEAGR 250 (441)
T ss_pred hHHHHHHHHHHhCCCCEEEEEcCC--CCEEEEECCCCC
Confidence 456788888888999999999865 467788887775
No 27
>PRK06194 hypothetical protein; Provisional
Probab=26.46 E-value=2e+02 Score=24.63 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=24.4
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
....+..++...+++.+ .+.++..|++|++|+++...
T Consensus 61 ~~D~~d~~~~~~~~~~~---~~~~g~id~vi~~Ag~~~~~ 97 (287)
T PRK06194 61 RTDVSDAAQVEALADAA---LERFGAVHLLFNNAGVGAGG 97 (287)
T ss_pred ECCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 33444444444444444 66678889999999997653
No 28
>PRK07063 short chain dehydrogenase; Provisional
Probab=25.31 E-value=2.1e+02 Score=24.09 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=27.3
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
.....+.-++...+++.+ .+.++..|++|++|++..+.+
T Consensus 63 ~~~Dl~~~~~~~~~~~~~---~~~~g~id~li~~ag~~~~~~ 101 (260)
T PRK07063 63 VPADVTDAASVAAAVAAA---EEAFGPLDVLVNNAGINVFAD 101 (260)
T ss_pred EEccCCCHHHHHHHHHHH---HHHhCCCcEEEECCCcCCCCC
Confidence 334555556666666665 666788999999999876554
No 29
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.15 E-value=2.6e+02 Score=23.37 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=23.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
.....++...+.+.+ .+.++..|++|++|++...
T Consensus 63 D~~~~~~~~~~~~~~---~~~~~~id~li~~ag~~~~ 96 (254)
T PRK07478 63 DVRDEAYAKALVALA---VERFGGLDIAFNNAGTLGE 96 (254)
T ss_pred CCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCCC
Confidence 444555555555555 6667888999999998643
No 30
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.95 E-value=2.2e+02 Score=23.48 Aligned_cols=39 Identities=5% Similarity=-0.012 Sum_probs=26.9
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
....+...++....++.+ ...++..|++||+|+..++.+
T Consensus 60 ~~~Dl~~~~~~~~~~~~~---~~~~~~~d~vi~~ag~~~~~~ 98 (251)
T PRK12826 60 RQVDVRDRAALKAAVAAG---VEDFGRLDILVANAGIFPLTP 98 (251)
T ss_pred EECCCCCHHHHHHHHHHH---HHHhCCCCEEEECCCCCCCCC
Confidence 334555566666666665 555678999999999887643
No 31
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=24.92 E-value=2.4e+02 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=24.7
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
.....+.-++...+++.+ .+.++..|++|++|++...
T Consensus 54 ~~~Dl~~~~~i~~~~~~~---~~~~~~id~vi~~ag~~~~ 90 (254)
T TIGR02415 54 YKLDVSDKDQVFSAIDQA---AEKFGGFDVMVNNAGVAPI 90 (254)
T ss_pred EEcCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCcCCC
Confidence 344455555555555555 6667888999999988643
No 32
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.80 E-value=2.3e+02 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
..+.-++...+++.+ .+.++..|++|++|+++.+.+
T Consensus 65 Dv~d~~~v~~~~~~~---~~~~g~iD~lInnAg~~~~~~ 100 (334)
T PRK07109 65 DVADAEAVQAAADRA---EEELGPIDTWVNNAMVTVFGP 100 (334)
T ss_pred cCCCHHHHHHHHHHH---HHHCCCCCEEEECCCcCCCCc
Confidence 344444444444444 667788999999999887654
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=24.67 E-value=33 Score=23.81 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEcCchHHHHHhhhcCCceEEEEEeec
Q 026930 127 LLQVPKMLSVLRKEWAPMAFCISFKLE 153 (230)
Q Consensus 127 L~~~PkiL~~l~~~~~p~~~vVgFklE 153 (230)
|..+|.++..|.+ .++-+||+--+
T Consensus 9 Lv~nPevl~kl~~---g~asLIGv~~~ 32 (57)
T PF05952_consen 9 LVQNPEVLEKLKE---GEASLIGVDKD 32 (57)
T ss_pred HHHChHHHHHHHc---CCeeEecCCHH
Confidence 6789999999985 46789998644
No 34
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.57 E-value=2.7e+02 Score=23.46 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=43.1
Q ss_pred cCchHH--HHHhhhcCCceEEEEEeeccChHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEe
Q 026930 129 QVPKML--SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVT 191 (230)
Q Consensus 129 ~~PkiL--~~l~~~~~p~~~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~ 191 (230)
|+|.++ ..|.+. +.-.++.||++..-+.+-++.-+..+ ...|+||-=..++-+|.+.|..
T Consensus 40 ps~~viv~DEL~k~--~~~~~l~~K~~~sYe~V~ekvpel~~-~~~~~viHL~~Hs~kNtI~ieq 101 (166)
T PF06162_consen 40 PSSAVIVLDELEKE--GEDKILFFKMEVSYEEVDEKVPELWK-EQPDFVIHLASHSVKNTIYIEQ 101 (166)
T ss_pred CCcceeeHHHhhcC--CccceeeeeccchHHHHHHHhHHHHh-hCCCeEEEecCCCCcceEEEEe
Confidence 455554 788753 45567888999987777777766654 5679999655566788888875
No 35
>PRK06114 short chain dehydrogenase; Provisional
Probab=24.39 E-value=2.4e+02 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=24.5
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
....+-++...+++.+ .+.++.-|++|++|++..+.+
T Consensus 65 ~D~~~~~~i~~~~~~~---~~~~g~id~li~~ag~~~~~~ 101 (254)
T PRK06114 65 ADVTSKADLRAAVART---EAELGALTLAVNAAGIANANP 101 (254)
T ss_pred cCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCCC
Confidence 3444445555555544 666788899999999876543
No 36
>PRK05876 short chain dehydrogenase; Provisional
Probab=24.35 E-value=2.4e+02 Score=24.39 Aligned_cols=37 Identities=14% Similarity=-0.007 Sum_probs=24.7
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
...++..++...+.+.+ .+.++..|++|++|+++...
T Consensus 61 ~~Dv~d~~~v~~~~~~~---~~~~g~id~li~nAg~~~~~ 97 (275)
T PRK05876 61 MCDVRHREEVTHLADEA---FRLLGHVDVVFSNAGIVVGG 97 (275)
T ss_pred eCCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCcCCCC
Confidence 34445555555555444 66678899999999987544
No 37
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=24.16 E-value=3.2e+02 Score=22.76 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=32.1
Q ss_pred CcccccccccHHHHHHHHHHHHHHhhhc-CCCCeEEEeeeccCc
Q 026930 62 GLLLKLPFTTIFEYLQMLQMIAVSSRSL-GPCSMFYLAAAVSDF 104 (230)
Q Consensus 62 ~~ll~i~f~tv~~y~~ml~~~~~~l~~~-~~~d~~i~AAAVSDf 104 (230)
.........+-++...+.+.+ .+.+ +.-|++|++|+.+..
T Consensus 46 ~~~~~~D~~~~~~v~~~~~~~---~~~~~g~iD~lV~~a~~~~~ 86 (241)
T PF13561_consen 46 AEVIQCDLSDEESVEALFDEA---VERFGGRIDILVNNAGISPP 86 (241)
T ss_dssp SEEEESCTTSHHHHHHHHHHH---HHHHCSSESEEEEEEESCTG
T ss_pred CceEeecCcchHHHHHHHHHH---HhhcCCCeEEEEeccccccc
Confidence 346777788888888888877 6777 889999999998876
No 38
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=23.76 E-value=73 Score=27.29 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=11.1
Q ss_pred CCCeEEEeeeccCcccCCccc
Q 026930 91 PCSMFYLAAAVSDFYVPWKSM 111 (230)
Q Consensus 91 ~~d~~i~AAAVSDf~~p~~~~ 111 (230)
+.|++||+||.-+|..|.+..
T Consensus 87 ~v~~IiH~Aa~v~~~~~~~~~ 107 (249)
T PF07993_consen 87 EVDVIIHCAASVNFNAPYSEL 107 (249)
T ss_dssp H--EEEE--SS-SBS-S--EE
T ss_pred ccceeeecchhhhhcccchhh
Confidence 358999999999999877655
No 39
>COG4996 Predicted phosphatase [General function prediction only]
Probab=23.75 E-value=2.2e+02 Score=23.56 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=43.3
Q ss_pred eccCcccCCccccccCccCCCCCceEEEEcCchHHHHHhhhcCCceEEEEEeeccChHHHHHHHHHHHHHhCCC
Q 026930 100 AVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMH 173 (230)
Q Consensus 100 AVSDf~~p~~~~~~~KIks~~~~l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd~~~li~~A~~kL~~~~~D 173 (230)
-+|-++||....+..+|..+.| -.++| -|++-+.+....+ ...++|-.-=.. ..+|-++|+.-+.+
T Consensus 16 ~iSsl~pPf~rVs~n~i~Ds~G-~ev~L--~~~v~~~l~warn-sG~i~~~~sWN~----~~kA~~aLral~~~ 81 (164)
T COG4996 16 NISSLEPPFRRVSSNTIEDSKG-REVHL--FPDVKETLKWARN-SGYILGLASWNF----EDKAIKALRALDLL 81 (164)
T ss_pred cchhcCCcceecCccceecCCC-eEEEE--cHHHHHHHHHHHh-CCcEEEEeecCc----hHHHHHHHHHhchh
Confidence 4688999999999999987754 45555 5777777753323 335666432222 36777777776654
No 40
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.57 E-value=2.4e+02 Score=23.54 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=25.2
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
.+...++.-.+...+++.+ .+.++..|++||+|+++.
T Consensus 56 ~~~~D~~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~ 92 (256)
T PRK12745 56 FFPADVADLSAHEAMLDAA---QAAWGRIDCLVNNAGVGV 92 (256)
T ss_pred EEEecCCCHHHHHHHHHHH---HHhcCCCCEEEECCccCC
Confidence 3444555666666666665 556678899999998753
No 41
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.51 E-value=2.1e+02 Score=24.16 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.....++...+.+.+ .+.++..|++|++|.+....
T Consensus 67 D~~~~~~v~~~~~~~---~~~~g~id~li~~Ag~~~~~ 101 (265)
T PRK07062 67 DVLDEADVAAFAAAV---EARFGGVDMLVNNAGQGRVS 101 (265)
T ss_pred cCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCCCC
Confidence 445555555555554 66678899999999986543
No 42
>PRK09242 tropinone reductase; Provisional
Probab=23.18 E-value=2.8e+02 Score=23.30 Aligned_cols=38 Identities=5% Similarity=-0.111 Sum_probs=27.0
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
...+.+.++...+++.+ .+.++..|++|++|.+..+.+
T Consensus 66 ~~Dl~~~~~~~~~~~~~---~~~~g~id~li~~ag~~~~~~ 103 (257)
T PRK09242 66 AADVSDDEDRRAILDWV---EDHWDGLHILVNNAGGNIRKA 103 (257)
T ss_pred ECCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCCC
Confidence 34566666666666666 566788999999999876543
No 43
>PRK08251 short chain dehydrogenase; Provisional
Probab=23.08 E-value=2.2e+02 Score=23.67 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.3
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
....+..++...+++.+ ...++..|++|++|++++..+
T Consensus 59 ~~D~~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~~ 96 (248)
T PRK08251 59 ALDVNDHDQVFEVFAEF---RDELGGLDRVIVNAGIGKGAR 96 (248)
T ss_pred EcCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCcCCCCC
Confidence 34555555555655555 556788899999999987653
No 44
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.00 E-value=3e+02 Score=19.90 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=30.3
Q ss_pred EEEEeeccChHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCe
Q 026930 147 CISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 195 (230)
Q Consensus 147 vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~ 195 (230)
.++|...+++ ++.+.++|+..|+..+-.. .......+++.+++|.
T Consensus 58 ~~~~~~~~~d---~~~~~~~l~~~Gi~~~~~~-~~~~~~~~~~~DP~Gn 102 (112)
T cd08344 58 YLSFGIFEDD---FAAFARHLEAAGVALAAAP-PGADPDGVWFRDPDGN 102 (112)
T ss_pred eEEEEeEhhh---HHHHHHHHHHcCCceecCC-CcCCCCEEEEECCCCC
Confidence 3577775443 6889999999999865432 1223356888899884
No 45
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=22.92 E-value=3.1e+02 Score=22.92 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
..+..++....++.+ ...++..|++|++|.+.+..
T Consensus 68 Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~ 102 (256)
T PRK06124 68 DIADEEAVAAAFARI---DAEHGRLDILVNNVGARDRR 102 (256)
T ss_pred cCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCCCC
Confidence 344444444444444 66677889999999987643
No 46
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=22.81 E-value=1.6e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCC
Q 026930 159 LLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 194 (230)
Q Consensus 159 li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~ 194 (230)
-++...+..++.++|+.++++-. -.++.+++.+|
T Consensus 71 ~l~~~~~~v~~~~ad~g~~~DgD--aDRl~~vd~~G 104 (104)
T PF02879_consen 71 SLQRLIKIVRESGADLGIAFDGD--ADRLGVVDENG 104 (104)
T ss_dssp TTHHHHHHHHHSTTSEEEEE-TT--SSBEEEEETTS
T ss_pred hhHHHHHHhhccCceEEEEECCc--CceeEEECCCC
Confidence 45677777788899999999875 45777777664
No 47
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.78 E-value=2.8e+02 Score=22.98 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 68 PFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 68 ~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
.....++...+++.+ .+.++..|++|++|+.+...+
T Consensus 62 D~~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~~ 97 (250)
T PRK08063 62 NVGDVEKIKEMFAQI---DEEFGRLDVFVNNAASGVLRP 97 (250)
T ss_pred CCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCCC
Confidence 344455555555555 556678899999999876554
No 48
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.69 E-value=2.8e+02 Score=23.26 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=24.5
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
..+...++...+.+.+ .+.++..|++|++|++...
T Consensus 66 ~D~~~~~~~~~~~~~~---~~~~~~~d~li~~ag~~~~ 100 (255)
T PRK07523 66 FDVTDHDAVRAAIDAF---EAEIGPIDILVNNAGMQFR 100 (255)
T ss_pred ccCCCHHHHHHHHHHH---HHhcCCCCEEEECCCCCCC
Confidence 3455555555555555 6667889999999998754
No 49
>PRK06138 short chain dehydrogenase; Provisional
Probab=22.50 E-value=2.8e+02 Score=22.95 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=25.7
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
+...+++.++...+++.+ .+.++..|++||+|++++..
T Consensus 58 ~~~D~~~~~~~~~~~~~i---~~~~~~id~vi~~ag~~~~~ 95 (252)
T PRK06138 58 RQGDVGSAEAVEALVDFV---AARWGRLDVLVNNAGFGCGG 95 (252)
T ss_pred EEcCCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 333445555555555555 66678899999999987654
No 50
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.33 E-value=2e+02 Score=24.91 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=28.0
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
.+.....+.++...+.+.+ .+.++..|++|++|++..
T Consensus 60 ~~~~Dl~~~~~v~~~~~~~---~~~~g~iD~linnAg~~~ 96 (262)
T PRK07984 60 VLPCDVAEDASIDAMFAEL---GKVWPKFDGFVHSIGFAP 96 (262)
T ss_pred EeecCCCCHHHHHHHHHHH---HhhcCCCCEEEECCccCC
Confidence 3445677777777777776 566788999999999753
No 51
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=22.32 E-value=47 Score=26.49 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.2
Q ss_pred eEEEEEecCCCCcccccc
Q 026930 3 YAVIFLYRRGTCEPYCSS 20 (230)
Q Consensus 3 yaVifl~R~~s~~Pf~r~ 20 (230)
..|+||.+-||+.||.|.
T Consensus 62 ~~vv~ltGvG~l~P~~R~ 79 (126)
T PF08747_consen 62 RDVVFLTGVGSLFPFIRS 79 (126)
T ss_pred CcEEEEeCcchhcchhhH
Confidence 579999999999999974
No 52
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=22.12 E-value=1.8e+02 Score=22.03 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=24.3
Q ss_pred cccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 67 LPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 67 i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
..+.+-.++..+++.+ ...++..|.+|++|++.+..+
T Consensus 60 ~D~~~~~~~~~~~~~~---~~~~~~id~li~~ag~~~~~~ 96 (180)
T smart00822 60 CDVADRAALAAALAAI---PARLGPLRGVIHAAGVLDDGL 96 (180)
T ss_pred CCCCCHHHHHHHHHHH---HHHcCCeeEEEEccccCCccc
Confidence 3455555555555544 555677899999999876543
No 53
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=22.06 E-value=3e+02 Score=27.35 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHH
Q 026930 158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDR 220 (230)
Q Consensus 158 ~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l~~~ 220 (230)
+.++.+.+...+.|+|+.+|++-. -.++.++++.+. .....+ +..+.-.+.+.+.+.
T Consensus 282 ~~l~~~~~~v~~~~adlgia~DpD--aDR~~vvd~~g~-~~~~l~---gd~l~aLla~~ll~~ 338 (584)
T PTZ00150 282 GALKLSMETAEAHGSTVVLANDPD--ADRLAVAEKLNN-GWKIFT---GNELGALLAWWAMKR 338 (584)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCC--CCceEEEEEcCC-ceEEcC---hhHHHHHHHHHHHHh
Confidence 467777787788999999999875 456777776542 111111 245555555555443
No 54
>PRK08589 short chain dehydrogenase; Validated
Probab=22.05 E-value=2.6e+02 Score=23.96 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=23.5
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
....+..++...+++.+ .+.++..|++|++|++..
T Consensus 60 ~~Dl~~~~~~~~~~~~~---~~~~g~id~li~~Ag~~~ 94 (272)
T PRK08589 60 HVDISDEQQVKDFASEI---KEQFGRVDVLFNNAGVDN 94 (272)
T ss_pred EeecCCHHHHHHHHHHH---HHHcCCcCEEEECCCCCC
Confidence 33444555555555555 666788899999998764
No 55
>PRK12743 oxidoreductase; Provisional
Probab=21.93 E-value=3e+02 Score=23.16 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=26.0
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
++...+...++....++.+ .+.++..|++|++|++....
T Consensus 56 ~~~~Dl~~~~~~~~~~~~~---~~~~~~id~li~~ag~~~~~ 94 (256)
T PRK12743 56 IRQLDLSDLPEGAQALDKL---IQRLGRIDVLVNNAGAMTKA 94 (256)
T ss_pred EEEccCCCHHHHHHHHHHH---HHHcCCCCEEEECCCCCCCC
Confidence 3344555555555555555 66778889999999886643
No 56
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=21.75 E-value=1.8e+02 Score=24.75 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCEEEeeccc---C-----CceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHH
Q 026930 159 LLEKADMARKKYGMHAVVANELL---S-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLV 218 (230)
Q Consensus 159 li~~A~~kL~~~~~D~VVaN~l~---~-----~~n~v~lv~~~~~~~i~~~~K~~~~eIa~~Iv~~l~ 218 (230)
.+++|+++++.-++|+=|+=.-. . +-+.+.++++.|.+.+..++- -++-..|++++.
T Consensus 53 A~nRA~~A~~~~~~dy~VGIEaGi~~~~~~y~d~~~~vV~d~~g~~t~g~S~~---f~lP~~v~~~vl 117 (175)
T COG1986 53 ARNRAKNALRAVDADYGVGIEAGIIRVGTKYVDFHWAVVVDREGRRTEGRSAG---FELPPRVLEEVL 117 (175)
T ss_pred HHHHHHHHHhhcCCcEEEEEeeeEeecccceEEEEEEEEEeCCCceeeecCCC---CcCCHHHHHHHH
Confidence 67899999998899987753221 1 357778888887776665544 555556665554
No 57
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=21.65 E-value=2.2e+02 Score=25.85 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=51.7
Q ss_pred CceEEEEc---CchHHHHHhhhcCCceEEEEEeeccChHHHHHHHHHHHHHh--------CCCEEEeecccCCceEEEEE
Q 026930 122 PLDMQLLQ---VPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKY--------GMHAVVANELLSRKEQVVVV 190 (230)
Q Consensus 122 ~l~L~L~~---~PkiL~~l~~~~~p~~~vVgFklETd~~~li~~A~~kL~~~--------~~D~VVaN~l~~~~n~v~lv 190 (230)
++-|.+.| +|..++...+++.| .++|+.=.+++ +-+-|++ -+=| +=|++|= ..--.+|+
T Consensus 179 PlFIsvDPeRD~~~~~~eY~~eF~p--kllGLTGT~eq--vk~vak~-yRVYfs~gp~d~~~DYlVD-----HSi~mYLi 248 (280)
T KOG2792|consen 179 PLFISVDPERDSVEVVAEYVSEFHP--KLLGLTGTTEQ--VKQVAKK-YRVYFSTGPKDEDQDYLVD-----HSIFMYLI 248 (280)
T ss_pred ceEEEeCcccCCHHHHHHHHHhcCh--hhhcccCCHHH--HHHHHHH-hEEeeccCCCCCCCCeeee-----eeEEEEEE
Confidence 46788888 77778887778876 48888655544 4444433 2211 3455552 23456778
Q ss_pred eCCCeee--ecC-CCCCChHHHHHHHHHHHHH
Q 026930 191 TNNGKIP--VYR-DKTSSDSDVEKPLTKLLVD 219 (230)
Q Consensus 191 ~~~~~~~--i~~-~~K~~~~eIa~~Iv~~l~~ 219 (230)
+++|... ... -++ ++|++.|+..+.+
T Consensus 249 dPeg~Fvd~~GrN~~~---~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 249 DPEGEFVDYYGRNYDA---DELADSILKHVAS 277 (280)
T ss_pred CCCcceehhhcccCCH---HHHHHHHHHHHHh
Confidence 8888532 222 233 7888888877654
No 58
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.53 E-value=3.1e+02 Score=22.63 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=25.9
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCc
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 104 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf 104 (230)
+...+....+....++.+ .+.++..|++|++|.+...
T Consensus 61 ~~~D~~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~ 97 (239)
T PRK07666 61 ATADVSDYEEVTAAIEQL---KNELGSIDILINNAGISKF 97 (239)
T ss_pred EECCCCCHHHHHHHHHHH---HHHcCCccEEEEcCccccC
Confidence 344555666666666665 5567888999999988653
No 59
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.23 E-value=3.2e+02 Score=19.55 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=31.8
Q ss_pred ceEEEEEeeccChHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCe
Q 026930 144 MAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 195 (230)
Q Consensus 144 ~~~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~ 195 (230)
+...++|..+..+ -++.+.+++.+.|.+++..-.........++.+++|.
T Consensus 59 ~~~~~~~~v~~~~--~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn 108 (114)
T cd07261 59 GGSELAFMVDDGA--AVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGH 108 (114)
T ss_pred CceEEEEEcCCHH--HHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCC
Confidence 4456788876533 4678888889999887642111112345777788874
No 60
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.65 E-value=2.2e+02 Score=24.93 Aligned_cols=56 Identities=9% Similarity=0.171 Sum_probs=35.1
Q ss_pred EEcCchHHHHHhhhcCCceEEEEEeeccC---------------hHHHHHHHHHHHHHhCCCEEEeecccC
Q 026930 127 LLQVPKMLSVLRKEWAPMAFCISFKLETD---------------AEILLEKADMARKKYGMHAVVANELLS 182 (230)
Q Consensus 127 L~~~PkiL~~l~~~~~p~~~vVgFklETd---------------~~~li~~A~~kL~~~~~D~VVaN~l~~ 182 (230)
+...|+++..+.+.+.++..+|++..-.+ .+.......+.++..|++.++.++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~ 176 (258)
T PRK01033 106 ALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDR 176 (258)
T ss_pred HhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCC
Confidence 34667888888776644556677764221 011223444566789999999887764
No 61
>PRK06181 short chain dehydrogenase; Provisional
Probab=20.56 E-value=3.2e+02 Score=22.94 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=24.2
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 66 KLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 66 ~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.....+.++...+++.+ .+.++..|++|++|++....
T Consensus 56 ~~Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~~~ 92 (263)
T PRK06181 56 PTDVSDAEACERLIEAA---VARFGGIDILVNNAGITMWS 92 (263)
T ss_pred EccCCCHHHHHHHHHHH---HHHcCCCCEEEECCCccccc
Confidence 33455555555555554 55667889999999886543
No 62
>PRK07774 short chain dehydrogenase; Provisional
Probab=20.53 E-value=2.9e+02 Score=22.88 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=24.8
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
+....++.++...+.+.+ .+.++..|++||+|++..
T Consensus 60 ~~~Dl~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~ 95 (250)
T PRK07774 60 VQVDVSDPDSAKAMADAT---VSAFGGIDYLVNNAAIYG 95 (250)
T ss_pred EEcCCCCHHHHHHHHHHH---HHHhCCCCEEEECCCCcC
Confidence 445555555555555555 556678899999999864
No 63
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.43 E-value=3.4e+02 Score=19.62 Aligned_cols=68 Identities=19% Similarity=0.099 Sum_probs=40.1
Q ss_pred ceEEEEcCchHHHHHhhhcCCceEEEEEeeccChHHHHHHHHHHHHHhCCCEEEeecccCCceEEEEEeCCCe
Q 026930 123 LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 195 (230)
Q Consensus 123 l~L~L~~~PkiL~~l~~~~~p~~~vVgFklETd~~~li~~A~~kL~~~~~D~VVaN~l~~~~n~v~lv~~~~~ 195 (230)
..|.|...|+.- ......++..-|+|...+.+ -++.+.++|.+.|+...=.+.-. ....+++.+++|.
T Consensus 45 ~~l~l~~~~~~~--~~~~~~~~~~hi~f~v~~~~--~v~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~DPdG~ 112 (125)
T cd07255 45 PLLVLEEDPDAP--PAPPGATGLYHFAILLPSRA--DLAAALRRLIELGIPLVGASDHL-VSEALYLSDPEGN 112 (125)
T ss_pred EEEEEEeCCCCC--cccCCCCcEEEEEEECCCHH--HHHHHHHHHHHcCCceecccccc-ceeEEEEECCCCC
Confidence 456777666541 11111234567899988765 56888889999998643222111 1235667788774
No 64
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.43 E-value=2.7e+02 Score=24.23 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=31.7
Q ss_pred EcCchHHHHHhhhcCCceEEEEEee-------------------ccChHHHHHHHHHHHHHhCCCEEEeecccC
Q 026930 128 LQVPKMLSVLRKEWAPMAFCISFKL-------------------ETDAEILLEKADMARKKYGMHAVVANELLS 182 (230)
Q Consensus 128 ~~~PkiL~~l~~~~~p~~~vVgFkl-------------------ETd~~~li~~A~~kL~~~~~D~VVaN~l~~ 182 (230)
..+|+++..+.+.+.++..+++.-+ +.....+++.+ +.|++.|+|.|+.+.+..
T Consensus 107 ~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~-~~l~~~G~~~iivt~i~~ 179 (254)
T TIGR00735 107 VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA-KEVEKLGAGEILLTSMDK 179 (254)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH-HHHHHcCCCEEEEeCcCc
Confidence 3467777777766633555555431 11112244444 556779999999887654
No 65
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=20.29 E-value=78 Score=28.09 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCccc
Q 026930 70 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 106 (230)
Q Consensus 70 ~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~~ 106 (230)
.++.++..+.+++ ..+|++||+||+.++..
T Consensus 52 ~Di~d~~~l~~a~-------~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 52 GDITDPESLEEAL-------EGVDVVFHTAAPVPPWG 81 (280)
T ss_pred eccccHHHHHHHh-------cCCceEEEeCccccccC
Confidence 3566666665554 56799999999988764
No 66
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.24 E-value=2.3e+02 Score=23.87 Aligned_cols=39 Identities=8% Similarity=-0.127 Sum_probs=26.1
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 64 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 64 ll~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
.+....+.-++....++.+ .+.++..|++|++|++.+..
T Consensus 54 ~~~~Dl~~~~~i~~~~~~~---~~~~g~id~lv~~ag~~~~~ 92 (257)
T PRK07024 54 VYAADVRDADALAAAAADF---IAAHGLPDVVIANAGISVGT 92 (257)
T ss_pred EEEcCCCCHHHHHHHHHHH---HHhCCCCCEEEECCCcCCCc
Confidence 3444555555655555555 56677789999999987643
No 67
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=20.13 E-value=3.5e+02 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEeeeccCcc
Q 026930 72 IFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 105 (230)
Q Consensus 72 v~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSDf~ 105 (230)
+.+...+-+.+....+.++..|++|++|++....
T Consensus 67 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~ 100 (254)
T PRK08085 67 VTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRH 100 (254)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 3333333333333366678899999999886543
No 68
>PRK08628 short chain dehydrogenase; Provisional
Probab=20.11 E-value=3.2e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=24.9
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCCCeEEEeeeccC
Q 026930 65 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 103 (230)
Q Consensus 65 l~i~f~tv~~y~~ml~~~~~~l~~~~~~d~~i~AAAVSD 103 (230)
....++..++...+++.+ .+.++..|++|++|++.+
T Consensus 60 ~~~D~~~~~~~~~~~~~~---~~~~~~id~vi~~ag~~~ 95 (258)
T PRK08628 60 VQVDLTDDAQCRDAVEQT---VAKFGRIDGLVNNAGVND 95 (258)
T ss_pred EEccCCCHHHHHHHHHHH---HHhcCCCCEEEECCcccC
Confidence 444555566666666555 666778899999999765
Done!