BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026931
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNE--FSDQVA- 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 12 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 70
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 71 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 130
Query: 179 NGEGTVKAYVSV 190
+ +AY+SV
Sbjct: 131 DLGLPTEAYISV 142
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNE--FSDQVA- 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 12 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 70
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 71 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 130
Query: 179 NGEGTVKAYVSV 190
+ +AY+SV
Sbjct: 131 DLGLPTEAYISV 142
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 338
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNE---FSDQVAL 119
+ PLV+ + D Y R + + +R +G +LG T+ + NS+ +P E SD L
Sbjct: 10 IAPLVLLSALDHYERTQTKENKRCVGVILGDA-NSSTIRVTNSFALPFEEDEKNSDVWFL 68
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP-NPVHLTVDTGFR 178
D Y M + K+N +E ++GW+ +G + I+E + + NP+ L VD +
Sbjct: 69 DHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQ 128
Query: 179 NGEGTVKAYVSV 190
AYV++
Sbjct: 129 GVGLPTDAYVAI 140
>pdb|4E0Q|A Chain A, Crystal Structure Of Mpn Domain From Cop9 Signalosome
pdb|4E0Q|B Chain B, Crystal Structure Of Mpn Domain From Cop9 Signalosome
Length = 141
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 59 NVTAKVHPLVIFNICDCYVR-RPDQAE--RVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD 115
+VT +HPLVI NI + + R R E +V G L+G ++I NS+ + + D
Sbjct: 5 SVTISLHPLVIXNISEHWTRFRAQHGEPRQVYGALIGK-QKGRNIEIXNSFELKTDVIGD 63
Query: 116 QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTG 147
+ ++ +Y++ + + +V +GW++TG
Sbjct: 64 ETVINKDYYNKKEQQYKQVFSDLDFIGWYTTG 95
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 71 NICDCYVRRPDQAERVIGTLLGSVLPDGTVD 101
N+ CY + PD V+ L S LPDG+VD
Sbjct: 143 NVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 85 RVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQV-ALDIEYHHTMLKSHLKVNPQEVIVGW 143
V+G +LG + D TV++ + + +P + V A+D + M+ + +++VGW
Sbjct: 48 EVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGW 107
Query: 144 F 144
+
Sbjct: 108 Y 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,454,567
Number of Sequences: 62578
Number of extensions: 253970
Number of successful extensions: 521
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 9
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)