Query 026931
Match_columns 230
No_of_seqs 134 out of 634
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 1.8E-46 6E-51 342.2 21.5 169 58-227 4-178 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 9.2E-44 3.2E-48 298.8 20.4 171 56-227 4-180 (187)
3 4e0q_A COP9 signalosome comple 100.0 8.1E-43 2.8E-47 282.6 9.1 134 56-190 2-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 1.2E-30 4.2E-35 234.9 13.5 169 56-226 21-219 (306)
5 2znr_A AMSH-like protease; met 99.5 7.2E-14 2.5E-18 116.6 10.6 127 58-194 7-138 (178)
6 3rzv_A STAM-binding protein; u 99.4 2.5E-12 8.5E-17 110.1 12.2 126 58-194 40-171 (211)
7 2kks_A Uncharacterized protein 99.0 8.1E-09 2.8E-13 82.8 14.8 133 62-212 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.9 8.7E-09 3E-13 83.2 8.8 134 63-213 2-142 (153)
9 1oi0_A AF2198, hypothetical pr 98.0 2.8E-05 9.6E-10 60.3 9.6 107 61-189 3-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 97.2 0.001 3.5E-08 58.5 7.9 110 71-194 46-172 (273)
11 2og4_A PRE-mRNA-splicing facto 97.0 0.0012 4E-08 57.6 6.9 112 71-194 45-169 (254)
12 3sbg_A PRE-mRNA-splicing facto 95.8 0.011 3.9E-07 56.0 5.9 103 83-194 368-480 (565)
13 2rh2_A Dihydrofolate reductase 72.8 1.3 4.5E-05 29.3 1.2 11 138-148 24-34 (62)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=342.23 Aligned_cols=169 Identities=25% Similarity=0.436 Sum_probs=153.6
Q ss_pred CCcEEEEehhhHhhHhhhhhhc-cCCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCc---ceeecHHHHHHHHHhhcc
Q 026931 58 SNVTAKVHPLVIFNICDCYVRR-PDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLKSHLK 133 (230)
Q Consensus 58 ~~~~V~IhPlVlL~I~DH~~R~-~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~---~~~iD~~y~~~m~~l~kk 133 (230)
...+|.|||||||+|+|||+|. ..++.||+|+|||+ ++|++|||+|||++|++++++ .+.+|.+|+++|+++||+
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~-~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kk 82 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGD-ANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKK 82 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEE-ECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeE-EcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhh
Confidence 3569999999999999999994 44578999999995 999999999999999987653 468999999999999999
Q ss_pred cCCCCcEEEEeecCCCCCcChHHHHHHHhhhCC-CcEEEEEeccCCCCceeEEEEEeEeeecC-CccccccEEEeceEEe
Q 026931 134 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP-NPVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPLDLR 211 (230)
Q Consensus 134 V~p~e~iVGWY~tg~~~~~~~~~ih~~~~~~~~-~pI~L~vDp~~~~~~l~ikAY~~~~~~~~-~~~~~~~F~~lp~~I~ 211 (230)
|||++.+||||+||+.++.+|+.||++|+++++ +|++|++|+...++++|++||++.+...+ +......|+++|++|+
T Consensus 83 V~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~ 162 (338)
T 4b4t_U 83 INAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIE 162 (338)
T ss_dssp HCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEEECSSCSTTCEEEEEEECEEEC
T ss_pred cCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeehhccCCCcccccEEEEeeeEee
Confidence 999999999999999999999999999999984 89999999999999999999999876664 3456678999999999
Q ss_pred cCchHHHHHHHHHHHh
Q 026931 212 MIEAERVGCMYMLVIL 227 (230)
Q Consensus 212 ~~eaErI~v~~i~k~~ 227 (230)
++|+|||||+|++++.
T Consensus 163 ~~eaE~Igv~~l~r~~ 178 (338)
T 4b4t_U 163 AEEAEEIGVEHLLRDV 178 (338)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhcc
Confidence 9999999999999864
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=9.2e-44 Score=298.77 Aligned_cols=171 Identities=31% Similarity=0.463 Sum_probs=152.6
Q ss_pred CCCCcEEEEehhhHhhHhhhhhhcc--CCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCc---ceeecHHHHHHHHHh
Q 026931 56 ATSNVTAKVHPLVIFNICDCYVRRP--DQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLKS 130 (230)
Q Consensus 56 ~~~~~~V~IhPlVlL~I~DH~~R~~--~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~---~~~iD~~y~~~m~~l 130 (230)
+.+..+|+|||+|+++|+|||+|.. ..+.+|+|+|||. +.|++++|+|||++|+.+++. .+.+|.+|+++|+++
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~-~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~ 82 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGM 82 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEE-ESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHH
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEE-EcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHH
Confidence 3556899999999999999999974 3678999999995 889999999999999987654 358999999999999
Q ss_pred hcccCCCCcEEEEeecCCCCCcChHHHHHHHhhhCCCcEEEEEeccCCCCceeEEEEEeEeeecCC-ccccccEEEeceE
Q 026931 131 HLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGD-RQLAAQFQEIPLD 209 (230)
Q Consensus 131 ~kkV~p~e~iVGWY~tg~~~~~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~l~ikAY~~~~~~~~~-~~~~~~F~~lp~~ 209 (230)
+|+++|++.+||||++++..+..|..+|++|++.+++|++|++||....++++++||++.+...++ .+....|.++|++
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~~ 162 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSE 162 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeEE
Confidence 999999999999999999999999999999999999999999999887667999999999877643 3557899999999
Q ss_pred EecCchHHHHHHHHHHHh
Q 026931 210 LRMIEAERVGCMYMLVIL 227 (230)
Q Consensus 210 I~~~eaErI~v~~i~k~~ 227 (230)
|+++|+|||||+||++..
T Consensus 163 I~~~eaE~i~v~~l~~~~ 180 (187)
T 2o95_A 163 IGAEEAEEVGVEHLLRDI 180 (187)
T ss_dssp ECCCHHHHHHHHHHHHHC
T ss_pred EecCcHHHHHHHHHHhcC
Confidence 999999999999999975
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=8.1e-43 Score=282.59 Aligned_cols=134 Identities=23% Similarity=0.389 Sum_probs=114.6
Q ss_pred CCCCcEEEEehhhHhhHhhhhhhccC---CCceEEEEEeeeEeeCCeEEEEEeeeecccCCCcceeecHHHHHHHHHhhc
Q 026931 56 ATSNVTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHL 132 (230)
Q Consensus 56 ~~~~~~V~IhPlVlL~I~DH~~R~~~---~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~~~~iD~~y~~~m~~l~k 132 (230)
.++..+|+|||||||+|+|||+|++. .+.+|+|+|||. ++|++|||+|||++|++++++++++|.+|+++|++++|
T Consensus 2 ~~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~-~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k 80 (141)
T 4e0q_A 2 SHMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGK-QKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYK 80 (141)
T ss_dssp ---CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEE-EeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHH
Confidence 45678999999999999999999642 368999999995 89999999999999999888889999999999999999
Q ss_pred ccCCCCcEEEEeecCCCCCcChHHHHHHHhhhCCCcEEEEEeccCCC-CceeEEEEEeE
Q 026931 133 KVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN-GEGTVKAYVSV 190 (230)
Q Consensus 133 kV~p~e~iVGWY~tg~~~~~~~~~ih~~~~~~~~~pI~L~vDp~~~~-~~l~ikAY~~~ 190 (230)
+|||++.+||||+||+.++.+|+.+|++|++++++||+|++||.++. ++||++||++.
T Consensus 81 ~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESL 139 (141)
T ss_dssp HHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC-
T ss_pred HhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999876 56999999874
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=234.94 Aligned_cols=169 Identities=15% Similarity=0.266 Sum_probs=142.5
Q ss_pred CCCCcEEEEehhhHhhHhhhhhhccCCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCcce-eecHHHHHHHHHhhccc
Q 026931 56 ATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQV-ALDIEYHHTMLKSHLKV 134 (230)
Q Consensus 56 ~~~~~~V~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~~~-~iD~~y~~~m~~l~kkV 134 (230)
..+..+|.|+|+|||+|++|+.+ ..+.+|+|.|||...+|++++|+|||++|+.++++++ .+|.+|+.+|+++++++
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQT 98 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHh
Confidence 35588999999999999999943 3678999999996466778999999999999888776 58999999999999999
Q ss_pred CCCCcEEEEeecCCC----CCcChHHHHHHHhhhCCCcEEEEEeccCC-CCceeEEEEEeEeeecC--C-----------
Q 026931 135 NPQEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFR-NGEGTVKAYVSVNLSLG--D----------- 196 (230)
Q Consensus 135 ~p~e~iVGWY~tg~~----~~~~~~~ih~~~~~~~~~pI~L~vDp~~~-~~~l~ikAY~~~~~~~~--~----------- 196 (230)
++++.+||||||++. ++..|+..|..|++.++.+|+|++||..+ .|+++++||++.+.+.. +
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~ 178 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTG 178 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC-----
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCccccccccc
Confidence 999999999999876 45678888999999999999999999876 48899999999875321 0
Q ss_pred -----------ccccccEEEeceEEecCchHHHHHHHHHHH
Q 026931 197 -----------RQLAAQFQEIPLDLRMIEAERVGCMYMLVI 226 (230)
Q Consensus 197 -----------~~~~~~F~~lp~~I~~~eaErI~v~~i~k~ 226 (230)
......|.++|+++..++.|+..++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~ 219 (306)
T 4b4t_V 179 LLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKE 219 (306)
T ss_dssp -----------------CEEECSCCCCCSSCTHHHHHHHHC
T ss_pred ccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhc
Confidence 011346999999999999999999998764
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.51 E-value=7.2e-14 Score=116.59 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=98.7
Q ss_pred CCcEEEEehhhHhhHhhhhhhccCCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCcceee-cHHHHHHHHHhhcccCC
Q 026931 58 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVAL-DIEYHHTMLKSHLKVNP 136 (230)
Q Consensus 58 ~~~~V~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~~~~i-D~~y~~~m~~l~kkV~p 136 (230)
+...|.|...++.+|+.|+.++..++..++|.|+|. ..++..+|+++|++|...+++.++. +.+ ..++. ....
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~-~~~~~~~V~~v~~~pq~~t~~~~~~~~~~---e~~~~--~~~~ 80 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK-LTHNEFTITHVIVPKQSAGPDYCDMENVE---ELFNV--QDQH 80 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECCHH---HHHHH--HHHH
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeE-ecCCCeEEEEEEeCCcCCCCCeeccCCHH---HHHHH--HHhC
Confidence 356899999999999999987643456899999995 7778899999999998776665543 322 11222 2345
Q ss_pred CCcEEEEeecCCC----CCcChHHHHHHHhhhCCCcEEEEEeccCCCCceeEEEEEeEeeec
Q 026931 137 QEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (230)
Q Consensus 137 ~e~iVGWY~tg~~----~~~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~l~ikAY~~~~~~~ 194 (230)
++.+||||+|.+. ++..|+..|..|+...+..|+|++||..+ .++||++.+.++
T Consensus 81 ~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~~g~ 138 (178)
T 2znr_A 81 DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTNAGM 138 (178)
T ss_dssp TCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECHHHH
T ss_pred CCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEECCcE
Confidence 8999999999864 66778888888988888899999999763 279999987654
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.39 E-value=2.5e-12 Score=110.06 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred CCcEEEEehhhHhhHhhhhhhccCCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCcceeec-H-HHHHHHHHhhcccC
Q 026931 58 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALD-I-EYHHTMLKSHLKVN 135 (230)
Q Consensus 58 ~~~~V~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~~~~iD-~-~y~~~m~~l~kkV~ 135 (230)
.-.+|.|-.-++-+|+.|...+..++.+++|.|+|. ..++.++|+++|..|...+++.+... . +.++-+.+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk-~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~------ 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGK-LMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQ------ 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEE-EETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHH------
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeE-cCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhh------
Confidence 346899999999999999976533456899999995 78889999999999887766655432 2 22222211
Q ss_pred CCCcEEEEeecCCC----CCcChHHHHHHHhhhCCCcEEEEEeccCCCCceeEEEEEeEeeec
Q 026931 136 PQEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (230)
Q Consensus 136 p~e~iVGWY~tg~~----~~~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~l~ikAY~~~~~~~ 194 (230)
.++.+||||+|.+. ++..|+..|..|+...+..|+|++||... +++||++++.++
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~----~lgaFrLtp~G~ 171 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ----ETGFFKLTDHGL 171 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT----EEEEEEECHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC----eeeEEEeccchh
Confidence 48999999999754 66778888888888888889999998633 799999998776
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.03 E-value=8.1e-09 Score=82.78 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=94.1
Q ss_pred EEEehhhHhhHhhhhhhccCCCceEEEEEeeeEeeCCeEEEEEeeeecccCC-CcceeecHHHHHHHHHhhcccCCCCcE
Q 026931 62 AKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEF-SDQVALDIEYHHTMLKSHLKVNPQEVI 140 (230)
Q Consensus 62 V~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~-e~~~~iD~~y~~~m~~l~kkV~p~e~i 140 (230)
+.|...++.+|++|..+. .+..++|.|+|. .+++...|+..|++|.... .+...+|.+.+.+..+..++ .++.+
T Consensus 2 l~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~~i 76 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA--LPNEACGLLGGR-RDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGWVM 76 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTSCEEEEEEEE-EETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred EEECHHHHHHHHHHHHhc--CCcceEEEEEEE-EcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCCEE
Confidence 568889999999999764 578999999995 7777899999999996543 34567887666665544443 25799
Q ss_pred EEEeecCCCCC--cChHHHHHHHhhhCCCcEEEEEeccCCCCceeEEEEEeEeeecCCccccccEEEeceEEec
Q 026931 141 VGWFSTGLGVT--GGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM 212 (230)
Q Consensus 141 VGWY~tg~~~~--~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~l~ikAY~~~~~~~~~~~~~~~F~~lp~~I~~ 212 (230)
||||+|.+... .+...++. +. .+..+++++.+.. ++...++||+.. +..|.+.|+.|..
T Consensus 77 vG~~HSHP~~~~~PS~~D~~~--~~-~~~~~~lIvs~~~-~~~~~~~af~~~---------~~~~~e~~i~~~~ 137 (146)
T 2kks_A 77 LGNFHSHPATPARPSAEDKRL--AF-DPSLSYLIISLAE-PQKPVCKSFLIK---------KDGVDEEEIILKE 137 (146)
T ss_dssp EEEEEEESSSCSSCCHHHHTT--CC-SSSCEEEEEECSC-SSSCEEEEEEEC---------SSCEEEECEEEES
T ss_pred EEEEeCCCcCCCCCCHHHHHh--hh-cCCCeEEEEEccC-CCceEEEEEEEe---------CCeEEEEEEEEeh
Confidence 99999987632 23333332 11 2445788887643 235679999974 2368999998864
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.85 E-value=8.7e-09 Score=83.21 Aligned_cols=134 Identities=15% Similarity=0.119 Sum_probs=89.1
Q ss_pred EEehhhHhhHhhhhhhccCCCceEEEEEeeeEee-CCeEEEEEeeeeccc--CC-CcceeecHHHHHHHHHhhcccCCCC
Q 026931 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLP-DGTVDIRNSYVVPHN--EF-SDQVALDIEYHHTMLKSHLKVNPQE 138 (230)
Q Consensus 63 ~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~-~~~VeVtnsF~vp~~--e~-e~~~~iD~~y~~~m~~l~kkV~p~e 138 (230)
.|...++.+|+.|..+. .+..++|.|+|. .. ++.+.|+..|++|.. ++ .+...+|.+.+.++.+..++. ++
T Consensus 2 ~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~--g~ 76 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADA--YPEEGCGFLLGT-VTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ--GL 76 (153)
T ss_dssp BCCHHHHHHHHHHHHHH--TTSCCCEEEEEE-ECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--TC
T ss_pred EeCHHHHHHHHHHHHhc--CCcceEEEEEEe-eccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--CC
Confidence 45678899999999764 578999999995 65 678899999999876 32 334556644444444444332 58
Q ss_pred cEEEEeecCCCCC--cChHHHHHHHhhhCCCcEEEEEeccCCCCc-eeEEEEEeEeeecCCccccccEEEeceEEecC
Q 026931 139 VIVGWFSTGLGVT--GGSALIHEFYCREVPNPVHLTVDTGFRNGE-GTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMI 213 (230)
Q Consensus 139 ~iVGWY~tg~~~~--~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~-l~ikAY~~~~~~~~~~~~~~~F~~lp~~I~~~ 213 (230)
.+||||+|.+... .+...+..+ ..+..++|++.+. .++ ..+++|+... ....|.+.+++|...
T Consensus 77 ~ivG~yHSHP~~~~~PS~~D~~~~---~~~~~~~lIvs~~--~~~~~~~~af~~~~-------~~g~~~e~~i~v~~~ 142 (153)
T 2kcq_A 77 DVVGVYHSHPDHPARPSATDLEEA---TFPGFTYVIVSVR--DGAPEALTAWALAP-------DRSEFHREDIVRPDP 142 (153)
T ss_dssp EEEEEEEECSSSSSSCCHHHHHTC---CCTTSEEEEEEEE--TTEEEEEEEEEECT-------TCSCEEEECCBCCCS
T ss_pred eEEEEEeCCCCCCCCCCHHHHHhh---hcCCCeEEEEECC--CCCccEEEEEEEeC-------CCCcEEEEEEEEecC
Confidence 9999999988632 222333221 1245688888642 233 4689999741 123689999887654
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=98.04 E-value=2.8e-05 Score=60.28 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=65.5
Q ss_pred EEEEehhhHhhHhhhhhhccCCCceEEEEEeeeEeeCCeEEEEEeeeecccCCCcceeecHHHHHHHHHhhcccCCCCcE
Q 026931 61 TAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVI 140 (230)
Q Consensus 61 ~V~IhPlVlL~I~DH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~e~~~~iD~~y~~~m~~l~kkV~p~e~i 140 (230)
.+.|...++.+|++|..+. .+..++|.|+|. . + .|++.|++| ..... ....|...|.. .++.+
T Consensus 3 ~v~i~~~~l~~i~~ha~~~--~P~E~cGlL~g~-~--~--~v~~~~~~p-~~~~~---~~~~f~~~~~~------~~~~i 65 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSA--HPDEFIALLSGS-K--D--VMDELIFLP-FVSGS---VSAVIHLDMLP------IGMKV 65 (124)
T ss_dssp SCEECHHHHHHHHHHHHHH--TTSCCEEEEEES-T--T--EECEEEECC-CCC----------------------CCCEE
T ss_pred EEEEcHHHHHHHHHHHHhc--CCCeeEEEEecc-c--C--EEEEEEECC-CCCCC---cCceeeeeecc------CCCEE
Confidence 3678889999999999764 678999999995 3 2 789999999 44321 11223222222 56999
Q ss_pred EEEeecCCCCC--cChHHHHHHHhhhCCCcEEEEEeccCCCCceeEEEEEe
Q 026931 141 VGWFSTGLGVT--GGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVS 189 (230)
Q Consensus 141 VGWY~tg~~~~--~~~~~ih~~~~~~~~~pI~L~vDp~~~~~~l~ikAY~~ 189 (230)
||||||++... .+...+..+ .. +..++|++.+.. +.-.+++|..
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~~--~~-~~~~~lIvs~~~--~~~~~~~f~~ 111 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSLF--TR-FGKYHIIVCYPY--DENSWKCYNR 111 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHHH--HH-SCSEEEEEETTC--CTTCEEEEET
T ss_pred EEEEEECcCCCCccCHHHHHhh--hc-CCCEEEEEEccC--CCceEEEEec
Confidence 99999987532 222222222 22 445788886532 2346777765
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=97.17 E-value=0.001 Score=58.53 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=76.3
Q ss_pred hHhhhhhhccCCCceEEEEEeeeEeeC---CeEEEEEeeeecccCCCcceee-----cHHHHHHHHHhhcccCCCCcEEE
Q 026931 71 NICDCYVRRPDQAERVIGTLLGSVLPD---GTVDIRNSYVVPHNEFSDQVAL-----DIEYHHTMLKSHLKVNPQEVIVG 142 (230)
Q Consensus 71 ~I~DH~~R~~~~~~~ViG~LLG~~~~~---~~VeVtnsF~vp~~e~e~~~~i-----D~~y~~~m~~l~kkV~p~e~iVG 142 (230)
+|++.+.+...-..++.|.|.|. ... +..||+.---+|...+.+.+.. ..+|+ -++..||
T Consensus 46 nllkkFi~IADlrTq~~G~LyG~-s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~LG 113 (273)
T 2p8r_A 46 NILKKFITISDLRTQIAGFMYGV-SPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPLG 113 (273)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-CCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEEE
T ss_pred HHHHHHHHHhhccceEEEEEecc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccccc
Confidence 55566655544456899999995 632 3567877777776655443322 12232 6899999
Q ss_pred EeecCCC----CCcChHHHHHHHhhh---C--CCcEEEEEeccCCCCceeEEEEEeEeeec
Q 026931 143 WFSTGLG----VTGGSALIHEFYCRE---V--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (230)
Q Consensus 143 WY~tg~~----~~~~~~~ih~~~~~~---~--~~pI~L~vDp~~~~~~l~ikAY~~~~~~~ 194 (230)
|-+|.+. +++.|+..|..|+.. . +++|++++-+ +.|..++.||++++.++
T Consensus 114 WIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsf--tpgs~sl~af~LT~~G~ 172 (273)
T 2p8r_A 114 WMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSF--TPGSVSLTAYKLTPSGY 172 (273)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEec--CCCCceeEEEEcChHHh
Confidence 9999653 677899999888764 2 3789988854 45667899999987665
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0012 Score=57.64 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=76.2
Q ss_pred hHhhhhhhccCCCceEEEEEeeeEeeC---CeEEEEEeeeecccCCCcceeec-----HHHHHHHHHhhcccCCCCcEEE
Q 026931 71 NICDCYVRRPDQAERVIGTLLGSVLPD---GTVDIRNSYVVPHNEFSDQVALD-----IEYHHTMLKSHLKVNPQEVIVG 142 (230)
Q Consensus 71 ~I~DH~~R~~~~~~~ViG~LLG~~~~~---~~VeVtnsF~vp~~e~e~~~~iD-----~~y~~~m~~l~kkV~p~e~iVG 142 (230)
+|++-+.+...-..++.|.|.|. ... +..||+.---+|+..+.+.+..- .+|+. --++..+|
T Consensus 45 nLlkkFi~IAD~~Tq~cG~LyG~-~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LG 114 (254)
T 2og4_A 45 NLLKKFIEISDVKIQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLG 114 (254)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-ECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEE
T ss_pred HHHHHHHHHhhccceEEEEEEcc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecc
Confidence 45555555544456799999996 532 35678776666766554433221 12211 25899999
Q ss_pred EeecCC----CCCcChHHHHHHHhh-hCCCcEEEEEeccCCCCceeEEEEEeEeeec
Q 026931 143 WFSTGL----GVTGGSALIHEFYCR-EVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (230)
Q Consensus 143 WY~tg~----~~~~~~~~ih~~~~~-~~~~pI~L~vDp~~~~~~l~ikAY~~~~~~~ 194 (230)
|-+|.+ .+++.|+..|..|+. ..+++|++++-+ +.|..++.||++++.++
T Consensus 115 WIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsf--tpgs~sl~af~LT~~G~ 169 (254)
T 2og4_A 115 WIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS--TPGSVSLSAYNLTDEGY 169 (254)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEec--CCCCceeEEEEcChhhh
Confidence 999965 366788999988877 457899998854 45567889999988765
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.011 Score=56.03 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=69.7
Q ss_pred CceEEEEEeeeEee-C--CeEEEEEeeeecccCCCcceeecHHHHHHHHHhhcc--cCCCCcEEEEeecCCC----CCcC
Q 026931 83 AERVIGTLLGSVLP-D--GTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLK--VNPQEVIVGWFSTGLG----VTGG 153 (230)
Q Consensus 83 ~~~ViG~LLG~~~~-~--~~VeVtnsF~vp~~e~e~~~~iD~~y~~~m~~l~kk--V~p~e~iVGWY~tg~~----~~~~ 153 (230)
..++.|.|.|. .. + +..||+..--+|..++.+.+..- + ...+.. .-.++..+||-+|.+. +++.
T Consensus 368 rTQicGyLyG~-sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~-----lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~ 440 (565)
T 3sbg_A 368 KIQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N-----IPDIGDLPDTEGLELLGWIHTQTEELKFMAAS 440 (565)
T ss_dssp SSCCEEEEEEE-EETTEEEEEEEEEEECCCEEECSSCEEEC-C-----CCCCTTSTTCTTCEEEEEEEEESSCCSSCCHH
T ss_pred cceeEEEEecC-CCCCCCCeEEEEEEEECCccCCCceEECC-C-----CCccccccccccCEecceeeecCCcccccCHH
Confidence 45799999995 66 3 34677766666776665554432 0 000000 1267999999999643 6788
Q ss_pred hHHHHHHHhhhC-CCcEEEEEeccCCCCceeEEEEEeEeeec
Q 026931 154 SALIHEFYCREV-PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (230)
Q Consensus 154 ~~~ih~~~~~~~-~~pI~L~vDp~~~~~~l~ikAY~~~~~~~ 194 (230)
|+..|..+...+ .+.|.+++ +.+.|..++.||.+++.|.
T Consensus 441 Dl~THakl~~~n~~~~I~itv--sftPGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 441 EVATHSKLFADKKRDCIDISI--FSTPGSVSLSAYNLTDEGY 480 (565)
T ss_dssp HHHHHHHHHSSSCTTCEEEEE--EEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEE--EecCCceEEEEEecCHhHH
Confidence 999998776654 35566666 4567889999999998875
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=72.78 E-value=1.3 Score=29.27 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=8.9
Q ss_pred CcEEEEeecCC
Q 026931 138 EVIVGWFSTGL 148 (230)
Q Consensus 138 e~iVGWY~tg~ 148 (230)
-.|||||+|.-
T Consensus 24 g~ivgwyct~l 34 (62)
T 2rh2_A 24 GQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEECCSS
T ss_pred ceEeEEEEccc
Confidence 47999999863
Done!