Query 026932
Match_columns 230
No_of_seqs 317 out of 2282
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 2E-20 4.3E-25 129.4 10.1 95 134-228 9-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 2.1E-20 4.6E-25 129.3 9.9 95 58-152 9-103 (103)
3 cd01807 GDX_N ubiquitin-like d 99.8 1.9E-20 4.2E-25 122.6 7.8 73 1-73 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.8 2.1E-19 4.7E-24 118.4 8.3 75 1-75 1-75 (76)
5 cd01793 Fubi Fubi ubiquitin-li 99.8 2.4E-19 5.2E-24 117.4 8.1 73 1-75 1-73 (74)
6 cd01797 NIRF_N amino-terminal 99.8 2.7E-19 5.9E-24 117.8 7.9 75 1-75 1-77 (78)
7 cd01793 Fubi Fubi ubiquitin-li 99.8 9.2E-19 2E-23 114.6 8.0 74 153-228 1-74 (74)
8 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 7.7E-19 1.7E-23 113.9 7.4 70 1-70 2-71 (73)
9 cd01807 GDX_N ubiquitin-like d 99.8 1.1E-18 2.3E-23 114.4 7.4 73 77-149 1-73 (74)
10 cd01806 Nedd8 Nebb8-like ubiq 99.8 2.5E-18 5.5E-23 113.3 8.7 74 1-74 1-74 (76)
11 cd01803 Ubiquitin Ubiquitin. U 99.8 2.1E-18 4.5E-23 113.7 8.3 75 1-75 1-75 (76)
12 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.8E-18 4E-23 113.2 7.5 72 3-74 1-72 (74)
13 cd01804 midnolin_N Ubiquitin-l 99.8 2.8E-18 6E-23 113.2 8.1 75 1-76 2-76 (78)
14 cd01810 ISG15_repeat2 ISG15 ub 99.8 2.4E-18 5.1E-23 112.7 7.6 74 155-228 1-74 (74)
15 PTZ00044 ubiquitin; Provisiona 99.8 3.2E-18 6.9E-23 112.8 8.1 76 153-228 1-76 (76)
16 cd01805 RAD23_N Ubiquitin-like 99.8 6.7E-18 1.4E-22 111.5 8.5 73 1-73 1-75 (77)
17 cd01809 Scythe_N Ubiquitin-lik 99.7 5.2E-18 1.1E-22 110.6 7.7 72 1-72 1-72 (72)
18 cd01794 DC_UbP_C dendritic cel 99.7 3.8E-18 8.3E-23 109.9 6.7 68 4-71 2-69 (70)
19 cd01797 NIRF_N amino-terminal 99.7 6.8E-18 1.5E-22 111.1 7.8 75 77-151 1-77 (78)
20 cd01803 Ubiquitin Ubiquitin. U 99.7 7.6E-18 1.6E-22 111.0 8.1 76 153-228 1-76 (76)
21 cd01806 Nedd8 Nebb8-like ubiq 99.7 9.6E-18 2.1E-22 110.5 8.5 76 153-228 1-76 (76)
22 cd01804 midnolin_N Ubiquitin-l 99.7 1.3E-17 2.7E-22 110.1 8.3 77 76-153 1-77 (78)
23 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.3E-17 2.7E-22 108.2 8.0 71 77-147 2-72 (73)
24 cd01798 parkin_N amino-termina 99.7 7.4E-18 1.6E-22 109.1 6.7 70 3-72 1-70 (70)
25 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.4E-17 5.3E-22 109.4 7.3 73 1-73 3-77 (80)
26 cd01794 DC_UbP_C dendritic cel 99.7 3.1E-17 6.7E-22 105.7 6.8 68 80-147 2-69 (70)
27 cd01805 RAD23_N Ubiquitin-like 99.7 9E-17 2E-21 106.1 8.1 73 77-149 1-75 (77)
28 cd01798 parkin_N amino-termina 99.7 5.9E-17 1.3E-21 104.9 6.7 70 79-148 1-70 (70)
29 PF00240 ubiquitin: Ubiquitin 99.7 8.7E-17 1.9E-21 103.9 7.4 68 6-73 1-68 (69)
30 KOG0003 Ubiquitin/60s ribosoma 99.7 3.2E-18 7E-23 114.2 0.4 76 1-76 1-76 (128)
31 cd01808 hPLIC_N Ubiquitin-like 99.7 1E-16 2.2E-21 104.0 7.4 71 1-72 1-71 (71)
32 KOG0005 Ubiquitin-like protein 99.7 3E-17 6.5E-22 97.6 4.3 70 1-70 1-70 (70)
33 cd01796 DDI1_N DNA damage indu 99.7 8.7E-17 1.9E-21 104.2 6.5 68 3-70 1-70 (71)
34 PF00240 ubiquitin: Ubiquitin 99.7 1.6E-16 3.4E-21 102.7 7.6 69 158-226 1-69 (69)
35 KOG0004 Ubiquitin/40S ribosoma 99.7 3.7E-17 8E-22 117.3 4.7 76 1-76 1-76 (156)
36 cd01800 SF3a120_C Ubiquitin-li 99.7 1.3E-16 2.8E-21 104.9 6.9 70 160-229 5-74 (76)
37 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.5E-16 5.3E-21 104.6 8.0 74 76-149 2-77 (80)
38 cd01809 Scythe_N Ubiquitin-lik 99.7 1.9E-16 4.2E-21 103.1 7.3 72 77-148 1-72 (72)
39 cd01812 BAG1_N Ubiquitin-like 99.7 3.7E-16 8.1E-21 101.5 7.3 70 1-71 1-70 (71)
40 cd01800 SF3a120_C Ubiquitin-li 99.7 3.8E-16 8.1E-21 102.7 6.7 68 8-75 5-72 (76)
41 cd01808 hPLIC_N Ubiquitin-like 99.6 7E-16 1.5E-20 100.1 6.9 71 77-148 1-71 (71)
42 cd01763 Sumo Small ubiquitin-r 99.6 1.9E-15 4.1E-20 101.8 9.0 77 152-228 11-87 (87)
43 cd01796 DDI1_N DNA damage indu 99.6 1.1E-15 2.4E-20 99.0 6.4 68 79-146 1-70 (71)
44 cd01790 Herp_N Homocysteine-re 99.6 1.2E-15 2.5E-20 99.5 6.5 71 1-71 2-78 (79)
45 cd01790 Herp_N Homocysteine-re 99.6 3.1E-15 6.8E-20 97.4 7.3 71 77-147 2-78 (79)
46 cd01813 UBP_N UBP ubiquitin pr 99.6 3.4E-15 7.4E-20 97.2 7.3 69 1-70 1-72 (74)
47 KOG0005 Ubiquitin-like protein 99.6 9.8E-16 2.1E-20 91.2 4.1 70 77-146 1-70 (70)
48 cd01763 Sumo Small ubiquitin-r 99.6 1.1E-14 2.3E-19 98.1 8.9 79 74-152 9-87 (87)
49 cd01812 BAG1_N Ubiquitin-like 99.6 4.9E-15 1.1E-19 96.2 7.0 69 77-146 1-69 (71)
50 KOG0003 Ubiquitin/60s ribosoma 99.6 2E-16 4.4E-21 105.6 0.1 76 154-229 2-77 (128)
51 smart00213 UBQ Ubiquitin homol 99.6 7.5E-15 1.6E-19 93.2 6.4 64 1-65 1-64 (64)
52 cd01813 UBP_N UBP ubiquitin pr 99.6 9E-15 2E-19 95.2 6.8 69 154-223 2-73 (74)
53 cd01799 Hoil1_N Ubiquitin-like 99.5 1.9E-14 4.1E-19 93.8 6.3 69 2-71 2-74 (75)
54 KOG0004 Ubiquitin/40S ribosoma 99.5 1.2E-14 2.6E-19 104.5 4.4 77 153-229 1-77 (156)
55 TIGR00601 rad23 UV excision re 99.5 8E-14 1.7E-18 117.2 7.8 73 1-73 1-76 (378)
56 smart00213 UBQ Ubiquitin homol 99.5 1.2E-13 2.5E-18 87.7 6.4 64 77-141 1-64 (64)
57 cd01795 USP48_C USP ubiquitin- 99.5 8.8E-14 1.9E-18 92.4 5.9 61 12-72 16-77 (107)
58 cd01799 Hoil1_N Ubiquitin-like 99.5 2.3E-13 4.9E-18 88.7 6.6 65 158-223 8-74 (75)
59 TIGR00601 rad23 UV excision re 99.4 3.5E-13 7.6E-18 113.4 7.6 74 77-150 1-77 (378)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 3.1E-13 6.7E-18 86.8 5.1 53 95-147 19-74 (75)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 2.6E-13 5.7E-18 87.2 4.4 54 171-224 19-75 (75)
62 cd01769 UBL Ubiquitin-like dom 99.4 2.7E-12 5.8E-17 82.6 7.1 68 4-71 1-68 (69)
63 cd01814 NTGP5 Ubiquitin-like N 99.3 1.7E-12 3.7E-17 89.0 5.8 75 76-150 4-92 (113)
64 cd01769 UBL Ubiquitin-like dom 99.3 5.4E-12 1.2E-16 81.1 7.1 67 81-147 2-68 (69)
65 cd01814 NTGP5 Ubiquitin-like N 99.3 1.9E-12 4.2E-17 88.8 4.4 73 2-74 6-92 (113)
66 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.4E-11 3.1E-16 80.0 7.6 71 153-223 1-72 (72)
67 KOG0010 Ubiquitin-like protein 99.3 5.5E-12 1.2E-16 106.6 6.6 74 76-150 15-88 (493)
68 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.1E-11 2.5E-16 80.5 6.6 71 1-71 1-72 (72)
69 cd01795 USP48_C USP ubiquitin- 99.3 8.1E-12 1.8E-16 83.1 5.8 61 88-148 16-77 (107)
70 KOG0010 Ubiquitin-like protein 99.3 8.7E-12 1.9E-16 105.4 6.2 73 153-226 16-88 (493)
71 KOG0011 Nucleotide excision re 99.3 1.2E-11 2.7E-16 99.5 6.7 74 1-74 1-76 (340)
72 cd01788 ElonginB Ubiquitin-lik 99.2 2.1E-11 4.5E-16 83.2 6.5 73 1-73 1-81 (119)
73 KOG0011 Nucleotide excision re 99.2 3.1E-11 6.8E-16 97.2 6.6 74 77-150 1-76 (340)
74 cd01789 Alp11_N Ubiquitin-like 99.2 1.4E-10 2.9E-15 77.5 7.7 69 2-70 3-79 (84)
75 cd01811 OASL_repeat1 2'-5' oli 99.2 2.4E-10 5.1E-15 71.7 7.4 72 1-73 1-77 (80)
76 cd01789 Alp11_N Ubiquitin-like 99.1 7.5E-10 1.6E-14 73.9 7.6 69 155-223 4-80 (84)
77 PF14560 Ubiquitin_2: Ubiquiti 99.1 7.5E-10 1.6E-14 74.6 7.7 69 2-70 3-81 (87)
78 cd01788 ElonginB Ubiquitin-lik 99.1 6.6E-10 1.4E-14 75.9 6.9 70 161-230 10-86 (119)
79 KOG0001 Ubiquitin and ubiquiti 99.0 2.9E-09 6.2E-14 68.9 8.2 72 3-74 2-73 (75)
80 PLN02560 enoyl-CoA reductase 99.0 1.6E-09 3.5E-14 89.2 7.6 70 1-70 1-81 (308)
81 PF14560 Ubiquitin_2: Ubiquiti 99.0 3.8E-09 8.2E-14 71.1 7.6 69 154-222 3-81 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.9 1.3E-08 2.7E-13 71.2 7.4 74 76-149 2-89 (111)
83 KOG0001 Ubiquitin and ubiquiti 98.8 3.7E-08 8.1E-13 63.5 8.7 73 155-227 2-74 (75)
84 PLN02560 enoyl-CoA reductase 98.8 1.3E-08 2.8E-13 83.9 7.6 70 77-146 1-81 (308)
85 KOG4248 Ubiquitin-like protein 98.7 1.2E-08 2.7E-13 93.0 5.7 74 2-76 4-77 (1143)
86 KOG4248 Ubiquitin-like protein 98.7 1.3E-08 2.9E-13 92.8 5.3 76 78-154 4-79 (1143)
87 PF11543 UN_NPL4: Nuclear pore 98.7 2.5E-08 5.3E-13 65.7 4.6 70 152-222 4-78 (80)
88 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.8E-07 3.8E-12 65.5 8.7 73 154-226 4-90 (111)
89 cd01801 Tsc13_N Ubiquitin-like 98.7 1.1E-07 2.3E-12 62.5 6.7 52 94-145 20-74 (77)
90 cd01801 Tsc13_N Ubiquitin-like 98.7 9.3E-08 2E-12 62.8 6.3 68 2-69 2-74 (77)
91 KOG1769 Ubiquitin-like protein 98.6 3.4E-07 7.5E-12 61.3 8.5 77 153-229 21-97 (99)
92 PF11543 UN_NPL4: Nuclear pore 98.6 2.4E-07 5.3E-12 61.0 6.4 69 1-70 5-78 (80)
93 KOG4495 RNA polymerase II tran 98.5 1.9E-07 4.1E-12 61.6 4.6 65 1-65 1-68 (110)
94 cd00196 UBQ Ubiquitin-like pro 98.5 6.5E-07 1.4E-11 55.5 6.6 67 5-71 2-68 (69)
95 cd01811 OASL_repeat1 2'-5' oli 98.4 1.6E-06 3.5E-11 54.7 7.1 70 77-147 1-75 (80)
96 KOG1769 Ubiquitin-like protein 98.4 2.5E-06 5.5E-11 57.2 8.2 79 75-153 19-97 (99)
97 cd00196 UBQ Ubiquitin-like pro 98.4 1.4E-06 3.1E-11 53.9 6.6 63 161-223 6-68 (69)
98 KOG3493 Ubiquitin-like protein 98.4 1.2E-07 2.6E-12 57.8 1.1 68 156-223 5-72 (73)
99 KOG3493 Ubiquitin-like protein 98.3 2.4E-07 5.3E-12 56.5 1.1 69 78-146 3-71 (73)
100 KOG0006 E3 ubiquitin-protein l 98.3 1.7E-06 3.6E-11 69.7 5.6 73 1-73 1-77 (446)
101 KOG0006 E3 ubiquitin-protein l 98.1 2.9E-06 6.4E-11 68.3 4.7 63 87-149 14-77 (446)
102 KOG1872 Ubiquitin-specific pro 98.1 7.9E-06 1.7E-10 69.4 6.2 67 7-73 9-76 (473)
103 PF11470 TUG-UBL1: GLUT4 regul 98.1 1.1E-05 2.4E-10 50.7 5.3 62 160-221 4-65 (65)
104 COG5227 SMT3 Ubiquitin-like pr 98.0 7.7E-06 1.7E-10 53.5 3.2 77 153-229 25-101 (103)
105 KOG1872 Ubiquitin-specific pro 98.0 1.8E-05 3.8E-10 67.3 6.2 71 155-226 6-77 (473)
106 KOG4495 RNA polymerase II tran 97.9 2.7E-05 5.9E-10 51.6 4.6 55 85-139 10-66 (110)
107 PF11470 TUG-UBL1: GLUT4 regul 97.9 6.4E-05 1.4E-09 47.2 6.0 63 83-145 3-65 (65)
108 PF08817 YukD: WXG100 protein 97.6 0.00024 5.2E-09 46.7 6.2 68 2-69 4-78 (79)
109 PF08817 YukD: WXG100 protein 97.6 0.00017 3.7E-09 47.4 5.5 67 155-221 5-78 (79)
110 PF00789 UBX: UBX domain; Int 97.5 0.0011 2.3E-08 43.8 8.2 70 153-222 7-81 (82)
111 PF13019 Telomere_Sde2: Telome 97.4 0.0011 2.3E-08 49.2 7.5 76 153-228 1-88 (162)
112 PF13019 Telomere_Sde2: Telome 97.4 0.0016 3.5E-08 48.2 8.2 63 1-63 1-71 (162)
113 smart00166 UBX Domain present 97.3 0.0018 3.9E-08 42.6 7.7 70 76-145 4-78 (80)
114 smart00166 UBX Domain present 97.3 0.0012 2.7E-08 43.4 6.8 69 153-221 5-78 (80)
115 COG5227 SMT3 Ubiquitin-like pr 97.3 0.00025 5.5E-09 46.5 3.1 76 75-150 23-98 (103)
116 PF00789 UBX: UBX domain; Int 97.3 0.0029 6.3E-08 41.7 8.0 69 2-70 8-81 (82)
117 PF10302 DUF2407: DUF2407 ubiq 97.2 0.0015 3.3E-08 44.5 5.9 49 89-137 14-66 (97)
118 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0039 8.5E-08 40.9 7.2 68 153-221 5-77 (79)
119 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0045 9.8E-08 40.6 7.3 68 2-69 6-77 (79)
120 cd01767 UBX UBX (ubiquitin reg 96.9 0.0058 1.3E-07 39.8 6.9 64 2-65 4-71 (77)
121 cd01770 p47_UBX p47-like ubiqu 96.9 0.0071 1.5E-07 39.7 7.2 66 76-141 4-73 (79)
122 cd01767 UBX UBX (ubiquitin reg 96.9 0.0075 1.6E-07 39.3 7.3 65 154-219 4-73 (77)
123 cd01773 Faf1_like1_UBX Faf1 ik 96.9 0.011 2.4E-07 38.9 7.7 71 76-147 5-80 (82)
124 cd01774 Faf1_like2_UBX Faf1 ik 96.9 0.011 2.4E-07 39.3 7.8 69 76-145 4-82 (85)
125 cd01770 p47_UBX p47-like ubiqu 96.8 0.0077 1.7E-07 39.5 6.8 65 2-66 6-74 (79)
126 cd01773 Faf1_like1_UBX Faf1 ik 96.8 0.011 2.3E-07 39.0 7.3 70 153-223 6-80 (82)
127 KOG1639 Steroid reductase requ 96.8 0.0026 5.7E-08 50.0 5.1 70 1-70 1-77 (297)
128 cd01771 Faf1_UBX Faf1 UBX doma 96.8 0.016 3.4E-07 38.1 7.9 70 76-146 4-78 (80)
129 cd01771 Faf1_UBX Faf1 UBX doma 96.8 0.012 2.5E-07 38.7 7.2 70 152-222 4-78 (80)
130 cd01774 Faf1_like2_UBX Faf1 ik 96.7 0.013 2.9E-07 38.9 7.4 69 153-222 5-83 (85)
131 PRK06437 hypothetical protein; 96.7 0.017 3.7E-07 36.5 7.6 62 158-228 6-67 (67)
132 KOG0013 Uncharacterized conser 96.7 0.0036 7.8E-08 48.0 5.1 63 9-71 155-217 (231)
133 PF14533 USP7_C2: Ubiquitin-sp 96.7 0.017 3.6E-07 45.5 8.8 101 12-114 35-160 (213)
134 PF10302 DUF2407: DUF2407 ubiq 96.6 0.0055 1.2E-07 41.8 4.8 49 164-212 13-65 (97)
135 KOG1639 Steroid reductase requ 96.5 0.0074 1.6E-07 47.5 5.7 69 77-145 1-76 (297)
136 COG5417 Uncharacterized small 96.4 0.016 3.5E-07 36.7 5.6 68 78-145 8-80 (81)
137 KOG0013 Uncharacterized conser 96.3 0.0071 1.5E-07 46.4 4.7 62 85-146 155-216 (231)
138 PF10790 DUF2604: Protein of U 96.1 0.029 6.3E-07 34.5 5.5 66 161-226 4-73 (76)
139 COG5417 Uncharacterized small 96.1 0.067 1.5E-06 34.0 7.2 65 157-221 11-80 (81)
140 PF14836 Ubiquitin_3: Ubiquiti 95.9 0.065 1.4E-06 35.7 7.2 67 163-230 14-86 (88)
141 PF14533 USP7_C2: Ubiquitin-sp 95.9 0.096 2.1E-06 41.2 9.2 102 87-190 34-160 (213)
142 PF12436 USP7_ICP0_bdg: ICP0-b 95.8 0.13 2.8E-06 41.5 10.0 107 90-196 88-223 (249)
143 PF09379 FERM_N: FERM N-termin 95.8 0.075 1.6E-06 34.6 7.2 68 157-224 1-77 (80)
144 PRK06437 hypothetical protein; 95.8 0.098 2.1E-06 33.1 7.3 62 1-71 1-62 (67)
145 KOG3206 Alpha-tubulin folding 95.6 0.058 1.2E-06 41.4 6.6 60 89-148 15-81 (234)
146 KOG3206 Alpha-tubulin folding 95.5 0.046 1E-06 42.0 6.0 59 165-223 15-80 (234)
147 PF11620 GABP-alpha: GA-bindin 95.3 0.15 3.2E-06 33.5 6.8 61 165-225 5-65 (88)
148 PF15044 CLU_N: Mitochondrial 95.3 0.038 8.3E-07 35.9 4.2 58 169-226 1-60 (76)
149 cd00754 MoaD Ubiquitin domain 95.1 0.091 2E-06 34.2 5.8 60 164-228 17-80 (80)
150 cd06406 PB1_P67 A PB1 domain i 95.0 0.12 2.5E-06 33.8 5.8 38 88-125 12-49 (80)
151 PF12436 USP7_ICP0_bdg: ICP0-b 95.0 0.14 3E-06 41.4 7.6 106 15-120 89-223 (249)
152 PF15044 CLU_N: Mitochondrial 94.8 0.068 1.5E-06 34.7 4.3 57 93-149 1-59 (76)
153 PF11620 GABP-alpha: GA-bindin 94.5 0.2 4.3E-06 32.9 5.9 61 12-72 4-64 (88)
154 cd06409 PB1_MUG70 The MUG70 pr 94.3 0.16 3.5E-06 33.7 5.3 44 79-122 3-49 (86)
155 PRK08364 sulfur carrier protei 94.1 0.84 1.8E-05 29.0 8.3 56 164-228 15-70 (70)
156 PF09379 FERM_N: FERM N-termin 94.0 0.72 1.6E-05 29.8 8.2 58 5-62 1-65 (80)
157 cd06407 PB1_NLP A PB1 domain i 93.7 0.39 8.4E-06 31.7 6.2 45 1-46 1-46 (82)
158 cd00565 ThiS ThiaminS ubiquiti 93.5 0.5 1.1E-05 29.5 6.3 58 166-228 8-65 (65)
159 KOG4583 Membrane-associated ER 93.4 0.047 1E-06 45.0 1.8 63 76-138 9-75 (391)
160 cd06406 PB1_P67 A PB1 domain i 93.2 0.37 8E-06 31.4 5.4 36 12-47 12-47 (80)
161 PRK06488 sulfur carrier protei 93.1 0.75 1.6E-05 28.7 6.7 60 161-228 6-65 (65)
162 TIGR01683 thiS thiamine biosyn 93.1 0.64 1.4E-05 28.9 6.3 57 167-228 8-64 (64)
163 cd06409 PB1_MUG70 The MUG70 pr 93.0 0.26 5.7E-06 32.7 4.6 44 156-199 4-50 (86)
164 cd01760 RBD Ubiquitin-like dom 93.0 0.51 1.1E-05 30.3 5.8 44 156-199 3-46 (72)
165 PF02597 ThiS: ThiS family; I 92.7 0.51 1.1E-05 30.2 5.7 63 164-228 13-77 (77)
166 cd00754 MoaD Ubiquitin domain 92.6 0.39 8.4E-06 31.1 5.1 59 88-151 17-79 (80)
167 KOG4598 Putative ubiquitin-spe 92.5 0.58 1.3E-05 42.7 7.4 178 12-196 878-1105(1203)
168 PF14836 Ubiquitin_3: Ubiquiti 92.5 0.68 1.5E-05 30.8 6.0 61 88-149 15-81 (88)
169 PF12754 Blt1: Cell-cycle cont 92.2 0.041 8.9E-07 45.0 0.0 58 172-229 103-182 (309)
170 TIGR01682 moaD molybdopterin c 92.0 0.99 2.1E-05 29.4 6.5 60 164-228 17-80 (80)
171 PRK08364 sulfur carrier protei 92.0 1.2 2.7E-05 28.2 6.8 63 77-149 5-67 (70)
172 PLN02799 Molybdopterin synthas 92.0 0.66 1.4E-05 30.3 5.7 61 163-228 19-82 (82)
173 KOG4583 Membrane-associated ER 92.0 0.068 1.5E-06 44.1 1.0 59 153-211 10-72 (391)
174 smart00666 PB1 PB1 domain. Pho 91.8 0.9 2E-05 29.5 6.2 44 79-123 4-47 (81)
175 smart00666 PB1 PB1 domain. Pho 91.8 0.89 1.9E-05 29.5 6.1 44 3-47 4-47 (81)
176 cd06407 PB1_NLP A PB1 domain i 91.6 0.76 1.6E-05 30.3 5.6 41 84-124 7-48 (82)
177 PLN02799 Molybdopterin synthas 91.6 0.68 1.5E-05 30.3 5.4 68 1-73 2-79 (82)
178 KOG2086 Protein tyrosine phosp 91.5 0.52 1.1E-05 39.9 5.7 68 75-142 304-375 (380)
179 PRK06488 sulfur carrier protei 91.5 1.1 2.3E-05 27.9 6.0 60 84-151 5-64 (65)
180 TIGR01687 moaD_arch MoaD famil 91.4 1.6 3.5E-05 28.9 7.1 61 164-228 17-88 (88)
181 cd01760 RBD Ubiquitin-like dom 91.2 0.8 1.7E-05 29.3 5.2 45 3-47 2-46 (72)
182 PF14453 ThiS-like: ThiS-like 91.1 0.91 2E-05 27.6 5.0 54 1-70 1-54 (57)
183 smart00455 RBD Raf-like Ras-bi 90.9 0.71 1.5E-05 29.4 4.7 44 80-123 3-46 (70)
184 KOG2982 Uncharacterized conser 90.4 0.57 1.2E-05 38.7 4.9 58 166-223 351-416 (418)
185 PF02196 RBD: Raf-like Ras-bin 90.3 3.2 7E-05 26.4 7.9 55 155-209 3-59 (71)
186 PRK05863 sulfur carrier protei 90.3 1.5 3.2E-05 27.4 5.8 60 161-228 6-65 (65)
187 PRK07440 hypothetical protein; 90.2 1.9 4.1E-05 27.4 6.3 61 161-228 10-70 (70)
188 smart00295 B41 Band 4.1 homolo 90.1 2.8 6.1E-05 32.2 8.5 73 152-224 3-83 (207)
189 KOG0012 DNA damage inducible p 90.1 0.52 1.1E-05 39.5 4.4 64 85-148 11-76 (380)
190 PF10790 DUF2604: Protein of U 90.0 1.7 3.6E-05 26.9 5.5 66 8-73 3-72 (76)
191 smart00455 RBD Raf-like Ras-bi 90.0 1.3 2.7E-05 28.2 5.3 44 4-47 3-46 (70)
192 PRK05659 sulfur carrier protei 89.9 2.2 4.7E-05 26.5 6.4 58 166-228 9-66 (66)
193 KOG4250 TANK binding protein k 89.9 0.99 2.2E-05 41.3 6.3 44 7-50 321-364 (732)
194 PRK06083 sulfur carrier protei 89.9 1.9 4E-05 28.6 6.2 61 161-228 24-84 (84)
195 cd06408 PB1_NoxR The PB1 domai 89.6 2.2 4.7E-05 28.3 6.3 35 3-37 3-38 (86)
196 PF12754 Blt1: Cell-cycle cont 89.6 0.1 2.2E-06 42.8 0.0 62 77-138 79-160 (309)
197 PRK08053 sulfur carrier protei 89.2 3 6.6E-05 26.0 6.6 57 167-228 10-66 (66)
198 KOG0012 DNA damage inducible p 88.7 0.73 1.6E-05 38.6 4.3 74 1-74 1-78 (380)
199 PRK07696 sulfur carrier protei 88.1 3.6 7.8E-05 25.8 6.4 61 161-228 6-67 (67)
200 TIGR01682 moaD molybdopterin c 87.9 2.6 5.5E-05 27.4 5.9 59 88-151 17-79 (80)
201 PF02196 RBD: Raf-like Ras-bin 87.7 4.4 9.6E-05 25.8 6.6 45 3-47 3-47 (71)
202 cd06408 PB1_NoxR The PB1 domai 87.5 3.6 7.7E-05 27.3 6.2 53 77-133 3-55 (86)
203 KOG2086 Protein tyrosine phosp 87.5 1.1 2.4E-05 37.9 4.8 67 153-219 306-376 (380)
204 PF14453 ThiS-like: ThiS-like 86.9 2.7 5.9E-05 25.5 5.0 46 90-146 9-54 (57)
205 COG2104 ThiS Sulfur transfer p 86.8 5.1 0.00011 25.3 6.4 59 165-228 10-68 (68)
206 PF02597 ThiS: ThiS family; I 86.7 1.5 3.3E-05 28.0 4.2 62 88-151 13-76 (77)
207 cd00565 ThiS ThiaminS ubiquiti 86.5 2.2 4.8E-05 26.5 4.7 60 85-151 5-64 (65)
208 PRK05659 sulfur carrier protei 86.2 6 0.00013 24.5 7.2 57 9-72 6-62 (66)
209 TIGR01687 moaD_arch MoaD famil 86.0 4.4 9.5E-05 26.7 6.3 61 87-151 16-87 (88)
210 smart00295 B41 Band 4.1 homolo 85.9 8.2 0.00018 29.6 8.8 63 76-138 3-72 (207)
211 PF00564 PB1: PB1 domain; Int 85.7 3.5 7.6E-05 26.8 5.7 39 85-123 9-48 (84)
212 KOG4261 Talin [Cytoskeleton] 85.4 4 8.7E-05 37.9 7.3 101 86-189 12-121 (1003)
213 PF10209 DUF2340: Uncharacteri 84.7 1.9 4.2E-05 30.5 4.1 56 169-224 22-108 (122)
214 cd06411 PB1_p51 The PB1 domain 83.5 2.6 5.7E-05 27.3 4.0 36 88-123 8-43 (78)
215 TIGR02958 sec_mycoba_snm4 secr 83.5 4.7 0.0001 35.5 7.0 69 155-224 5-80 (452)
216 cd06410 PB1_UP2 Uncharacterize 83.4 4.7 0.0001 27.5 5.5 40 5-45 17-56 (97)
217 PF03671 Ufm1: Ubiquitin fold 83.0 5.5 0.00012 25.3 5.1 58 165-222 18-76 (76)
218 PRK06944 sulfur carrier protei 82.9 8.7 0.00019 23.6 6.7 57 166-228 9-65 (65)
219 TIGR01683 thiS thiamine biosyn 82.5 7.9 0.00017 23.9 6.0 58 9-73 4-61 (64)
220 cd01818 TIAM1_RBD Ubiquitin do 81.9 4 8.6E-05 26.3 4.3 40 157-196 4-43 (77)
221 KOG2689 Predicted ubiquitin re 81.7 3.8 8.2E-05 33.2 5.1 69 153-221 211-284 (290)
222 PF08337 Plexin_cytopl: Plexin 81.4 3.3 7.2E-05 37.1 5.2 65 162-226 201-291 (539)
223 PF00564 PB1: PB1 domain; Int 81.2 6.5 0.00014 25.4 5.5 38 9-46 9-47 (84)
224 cd06396 PB1_NBR1 The PB1 domai 81.1 3.9 8.5E-05 26.8 4.2 34 4-37 2-38 (81)
225 PRK05863 sulfur carrier protei 80.9 11 0.00023 23.4 7.0 56 9-72 6-61 (65)
226 cd06396 PB1_NBR1 The PB1 domai 80.9 7 0.00015 25.6 5.3 37 83-121 6-44 (81)
227 PTZ00380 microtubule-associate 80.7 4.5 9.6E-05 28.7 4.7 47 165-211 43-89 (121)
228 PF10209 DUF2340: Uncharacteri 80.5 4.3 9.3E-05 28.7 4.5 56 92-147 21-107 (122)
229 TIGR02958 sec_mycoba_snm4 secr 80.4 8.1 0.00018 34.1 7.3 70 2-72 4-80 (452)
230 cd06411 PB1_p51 The PB1 domain 80.2 4.2 9.2E-05 26.4 4.1 37 11-47 7-43 (78)
231 KOG2982 Uncharacterized conser 79.6 2.2 4.8E-05 35.4 3.3 54 93-146 354-415 (418)
232 KOG4250 TANK binding protein k 79.4 5.3 0.00011 36.8 5.9 44 83-126 321-364 (732)
233 PRK06944 sulfur carrier protei 79.4 12 0.00026 23.0 7.3 57 9-73 6-62 (65)
234 PRK08053 sulfur carrier protei 78.9 13 0.00028 23.1 7.3 62 1-72 1-62 (66)
235 cd05992 PB1 The PB1 domain is 78.5 8.6 0.00019 24.6 5.4 38 86-123 9-47 (81)
236 PTZ00380 microtubule-associate 78.4 4.1 9E-05 28.9 3.9 45 91-135 45-89 (121)
237 cd01817 RGS12_RBD Ubiquitin do 78.3 15 0.00033 23.5 6.4 64 158-224 5-70 (73)
238 cd05992 PB1 The PB1 domain is 78.2 11 0.00024 24.1 5.9 43 3-46 3-46 (81)
239 PRK06083 sulfur carrier protei 78.1 10 0.00023 25.0 5.6 64 77-150 19-82 (84)
240 PF08337 Plexin_cytopl: Plexin 77.9 3.6 7.9E-05 36.9 4.4 65 86-150 201-291 (539)
241 PF14732 UAE_UbL: Ubiquitin/SU 77.0 9.4 0.0002 25.4 5.2 56 167-222 2-67 (87)
242 PRK11840 bifunctional sulfur c 76.3 13 0.00028 31.2 6.9 58 167-229 10-67 (326)
243 cd01777 SNX27_RA Ubiquitin dom 76.0 7.6 0.00016 25.8 4.4 42 2-43 3-44 (87)
244 cd01817 RGS12_RBD Ubiquitin do 75.8 18 0.00039 23.2 7.4 43 5-47 4-46 (73)
245 KOG2689 Predicted ubiquitin re 75.6 11 0.00023 30.7 6.0 70 76-145 210-284 (290)
246 PRK07696 sulfur carrier protei 75.5 16 0.00034 22.9 5.7 58 85-149 6-64 (67)
247 cd01818 TIAM1_RBD Ubiquitin do 75.2 9.6 0.00021 24.6 4.6 41 80-120 3-43 (77)
248 cd01766 Ufm1 Urm1-like ubiquit 74.9 17 0.00037 23.2 5.6 61 166-226 19-80 (82)
249 PRK11130 moaD molybdopterin sy 74.8 20 0.00043 23.2 6.5 57 167-228 19-81 (81)
250 PF14451 Ub-Mut7C: Mut7-C ubiq 74.3 16 0.00034 24.0 5.6 53 162-223 22-75 (81)
251 PF10407 Cytokin_check_N: Cdc1 74.1 20 0.00043 23.0 5.9 65 12-81 4-69 (73)
252 cd01787 GRB7_RA RA (RAS-associ 74.0 12 0.00027 24.7 5.0 38 3-40 5-42 (85)
253 cd01764 Urm1 Urm1-like ubuitin 73.4 3.7 8E-05 27.7 2.6 57 167-228 23-94 (94)
254 cd01777 SNX27_RA Ubiquitin dom 73.2 8.5 0.00018 25.6 4.1 39 154-192 3-41 (87)
255 cd06410 PB1_UP2 Uncharacterize 72.9 14 0.0003 25.2 5.3 39 82-121 18-56 (97)
256 PF14451 Ub-Mut7C: Mut7-C ubiq 72.5 17 0.00037 23.8 5.5 53 10-71 22-75 (81)
257 COG5100 NPL4 Nuclear pore prot 71.2 15 0.00033 31.6 6.2 68 155-223 3-78 (571)
258 PF11069 DUF2870: Protein of u 71.2 6.6 0.00014 26.6 3.3 36 194-229 3-39 (98)
259 COG2104 ThiS Sulfur transfer p 70.6 24 0.00052 22.3 6.8 55 90-149 11-65 (68)
260 KOG3439 Protein conjugation fa 69.6 22 0.00048 24.7 5.6 37 12-48 46-82 (116)
261 cd01787 GRB7_RA RA (RAS-associ 69.3 20 0.00044 23.7 5.3 58 78-135 4-68 (85)
262 KOG4572 Predicted DNA-binding 69.0 9.1 0.0002 36.0 4.7 63 161-223 3-69 (1424)
263 PF09469 Cobl: Cordon-bleu ubi 68.7 6.7 0.00014 25.4 2.8 35 105-139 2-39 (79)
264 KOG4598 Putative ubiquitin-spe 68.0 22 0.00048 33.0 6.8 97 88-186 878-992 (1203)
265 PRK05738 rplW 50S ribosomal pr 66.6 10 0.00022 25.5 3.6 40 10-49 20-60 (92)
266 cd01764 Urm1 Urm1-like ubuitin 66.1 7.9 0.00017 26.1 3.0 56 91-151 23-93 (94)
267 cd06398 PB1_Joka2 The PB1 doma 65.8 31 0.00066 23.2 5.7 39 85-123 8-52 (91)
268 TIGR03636 L23_arch archaeal ri 65.4 12 0.00027 24.2 3.6 33 10-42 14-46 (77)
269 PF02017 CIDE-N: CIDE-N domain 64.8 25 0.00054 22.9 4.9 38 97-134 21-60 (78)
270 smart00314 RA Ras association 64.8 24 0.00052 23.2 5.2 30 10-39 15-44 (90)
271 PF00276 Ribosomal_L23: Riboso 64.7 9.4 0.0002 25.6 3.1 39 11-49 21-60 (91)
272 KOG3439 Protein conjugation fa 64.4 25 0.00055 24.4 5.1 38 89-126 47-84 (116)
273 cd01766 Ufm1 Urm1-like ubiquit 64.4 35 0.00075 21.8 5.5 60 90-149 19-79 (82)
274 PF11069 DUF2870: Protein of u 63.7 12 0.00026 25.4 3.4 31 118-149 3-33 (98)
275 PF02017 CIDE-N: CIDE-N domain 63.6 23 0.0005 23.0 4.6 34 173-206 21-56 (78)
276 PF09469 Cobl: Cordon-bleu ubi 63.6 4.1 8.8E-05 26.3 1.1 35 181-215 2-39 (79)
277 KOG2561 Adaptor protein NUB1, 63.2 8.1 0.00018 33.7 3.1 58 90-147 53-110 (568)
278 PRK07440 hypothetical protein; 63.2 35 0.00077 21.5 6.9 57 8-71 9-65 (70)
279 PF00788 RA: Ras association ( 62.9 26 0.00056 22.9 5.1 33 164-196 18-52 (93)
280 PF03671 Ufm1: Ubiquitin fold 62.3 38 0.00083 21.6 6.2 56 90-145 19-75 (76)
281 KOG4572 Predicted DNA-binding 62.2 12 0.00026 35.2 4.2 62 85-146 3-68 (1424)
282 PF00788 RA: Ras association ( 62.0 39 0.00085 22.0 5.9 27 12-38 18-44 (93)
283 PF00276 Ribosomal_L23: Riboso 62.0 12 0.00026 25.1 3.3 40 163-202 21-61 (91)
284 COG5100 NPL4 Nuclear pore prot 62.0 30 0.00065 29.8 6.2 70 77-147 1-78 (571)
285 cd01611 GABARAP Ubiquitin doma 62.0 12 0.00025 26.3 3.3 59 165-224 43-106 (112)
286 cd06398 PB1_Joka2 The PB1 doma 61.9 33 0.00071 23.0 5.3 38 9-46 8-51 (91)
287 PRK11840 bifunctional sulfur c 61.8 50 0.0011 27.8 7.4 59 9-74 6-64 (326)
288 PF02991 Atg8: Autophagy prote 61.6 16 0.00035 25.2 3.8 47 165-211 35-82 (104)
289 PRK14548 50S ribosomal protein 61.5 16 0.00034 24.2 3.6 33 10-42 21-53 (84)
290 cd01768 RA RA (Ras-associating 61.1 33 0.00071 22.3 5.3 35 86-120 12-48 (87)
291 cd01775 CYR1_RA Ubiquitin doma 60.8 44 0.00095 22.7 5.7 42 79-120 5-47 (97)
292 PF02991 Atg8: Autophagy prote 59.3 27 0.00058 24.1 4.6 56 91-146 37-96 (104)
293 cd01611 GABARAP Ubiquitin doma 58.8 54 0.0012 22.9 6.2 46 90-135 44-90 (112)
294 smart00144 PI3K_rbd PI3-kinase 58.7 58 0.0013 22.5 6.8 64 162-225 28-105 (108)
295 cd01768 RA RA (Ras-associating 57.6 50 0.0011 21.4 5.7 29 10-38 12-40 (87)
296 smart00144 PI3K_rbd PI3-kinase 56.3 64 0.0014 22.3 7.5 72 77-148 18-104 (108)
297 COG0089 RplW Ribosomal protein 55.7 17 0.00037 24.6 3.1 34 10-43 21-54 (94)
298 PF08825 E2_bind: E2 binding d 55.6 29 0.00062 22.9 4.1 55 15-70 1-69 (84)
299 cd01776 Rin1_RA Ubiquitin doma 54.2 22 0.00048 23.3 3.3 43 163-205 14-61 (87)
300 PRK01777 hypothetical protein; 53.9 55 0.0012 22.1 5.4 63 1-72 4-76 (95)
301 PRK05738 rplW 50S ribosomal pr 53.8 23 0.00049 23.8 3.5 40 86-125 20-60 (92)
302 smart00266 CAD Domains present 53.2 29 0.00064 22.3 3.7 46 173-220 19-66 (74)
303 KOG2561 Adaptor protein NUB1, 53.2 9.8 0.00021 33.2 2.0 57 167-223 54-110 (568)
304 cd01775 CYR1_RA Ubiquitin doma 52.6 55 0.0012 22.2 5.1 49 156-204 6-59 (97)
305 PRK08453 fliD flagellar cappin 52.5 57 0.0012 30.5 6.9 86 8-93 135-236 (673)
306 cd06397 PB1_UP1 Uncharacterize 52.3 31 0.00068 22.5 3.8 40 160-199 7-46 (82)
307 TIGR03636 L23_arch archaeal ri 51.7 25 0.00054 22.8 3.3 34 87-120 15-48 (77)
308 smart00314 RA Ras association 51.7 64 0.0014 21.1 5.5 36 85-120 14-51 (90)
309 PF00794 PI3K_rbd: PI3-kinase 51.0 77 0.0017 21.6 6.9 71 77-147 17-101 (106)
310 cd01612 APG12_C Ubiquitin-like 50.8 22 0.00048 23.6 3.0 61 164-224 17-81 (87)
311 CHL00030 rpl23 ribosomal prote 50.3 27 0.00059 23.5 3.4 34 9-42 18-51 (93)
312 PF08783 DWNN: DWNN domain; I 50.0 41 0.00088 21.6 4.1 35 13-47 12-49 (74)
313 PF06234 TmoB: Toluene-4-monoo 49.9 74 0.0016 21.1 5.9 60 165-224 17-84 (85)
314 KOG4261 Talin [Cytoskeleton] 49.6 51 0.0011 31.1 6.0 101 10-113 12-121 (1003)
315 cd01615 CIDE_N CIDE_N domain, 47.8 40 0.00087 21.9 3.8 34 173-206 21-56 (78)
316 smart00266 CAD Domains present 47.8 51 0.0011 21.2 4.2 38 97-134 19-58 (74)
317 PF02192 PI3K_p85B: PI3-kinase 47.6 25 0.00054 22.9 2.8 22 13-34 2-23 (78)
318 KOG2507 Ubiquitin regulatory p 47.2 64 0.0014 28.2 5.9 76 75-150 313-393 (506)
319 PF11816 DUF3337: Domain of un 46.3 55 0.0012 27.6 5.5 63 165-227 250-330 (331)
320 PF14847 Ras_bdg_2: Ras-bindin 45.7 84 0.0018 21.7 5.4 36 155-190 3-38 (105)
321 PRK14548 50S ribosomal protein 45.6 36 0.00078 22.5 3.4 35 86-120 21-55 (84)
322 cd06404 PB1_aPKC PB1 domain is 44.7 58 0.0013 21.4 4.2 40 4-44 2-42 (83)
323 PF09138 Urm1: Urm1 (Ubiquitin 44.6 24 0.00052 24.0 2.5 76 147-228 4-96 (96)
324 COG1977 MoaD Molybdopterin con 44.4 52 0.0011 21.5 4.1 55 170-228 25-84 (84)
325 PF06234 TmoB: Toluene-4-monoo 44.2 92 0.002 20.6 5.0 58 90-147 18-83 (85)
326 KOG0007 Splicing factor 3a, su 43.6 10 0.00022 32.1 0.7 50 83-132 289-339 (341)
327 COG0089 RplW Ribosomal protein 42.9 38 0.00083 22.9 3.2 60 162-221 21-90 (94)
328 cd06397 PB1_UP1 Uncharacterize 42.7 96 0.0021 20.3 5.0 52 84-135 7-63 (82)
329 PRK12280 rplW 50S ribosomal pr 42.4 40 0.00087 25.2 3.6 39 9-47 21-60 (158)
330 cd01612 APG12_C Ubiquitin-like 42.2 1E+02 0.0022 20.4 6.2 45 90-134 19-65 (87)
331 KOG1364 Predicted ubiquitin re 41.6 42 0.0009 28.4 3.9 65 78-142 279-349 (356)
332 CHL00030 rpl23 ribosomal prote 41.5 43 0.00093 22.6 3.3 35 162-196 19-53 (93)
333 cd05484 retropepsin_like_LTR_2 41.2 37 0.00081 22.3 3.1 45 8-52 7-55 (91)
334 KOG4146 Ubiquitin-like protein 40.6 1.1E+02 0.0024 20.5 7.5 84 144-228 6-101 (101)
335 cd06539 CIDE_N_A CIDE_N domain 40.3 56 0.0012 21.2 3.6 47 173-221 21-69 (78)
336 PF00794 PI3K_rbd: PI3-kinase 39.3 1.2E+02 0.0027 20.6 7.0 70 155-224 19-102 (106)
337 smart00143 PI3K_p85B PI3-kinas 38.6 34 0.00073 22.3 2.4 23 13-35 2-24 (78)
338 cd01666 TGS_DRG_C TGS_DRG_C: 38.4 70 0.0015 20.5 3.8 35 1-35 2-39 (75)
339 KOG2507 Ubiquitin regulatory p 37.8 51 0.0011 28.7 4.0 76 151-226 313-393 (506)
340 cd06536 CIDE_N_ICAD CIDE_N dom 37.6 59 0.0013 21.3 3.4 46 173-220 21-70 (80)
341 TIGR03028 EpsE polysaccharide 37.4 2.1E+02 0.0046 22.7 12.7 162 56-221 58-234 (239)
342 PF02824 TGS: TGS domain; Int 37.1 67 0.0015 19.4 3.5 50 3-56 1-50 (60)
343 KOG0007 Splicing factor 3a, su 36.0 19 0.00041 30.5 1.2 49 160-208 290-339 (341)
344 KOG1364 Predicted ubiquitin re 35.6 35 0.00075 28.8 2.6 65 154-218 279-349 (356)
345 PF04023 FeoA: FeoA domain; I 35.1 88 0.0019 19.4 4.0 36 130-166 26-61 (74)
346 cd01782 AF6_RA_repeat1 Ubiquit 34.7 1.2E+02 0.0026 21.1 4.7 37 1-37 24-62 (112)
347 PF14847 Ras_bdg_2: Ras-bindin 34.3 1.6E+02 0.0034 20.4 5.6 36 79-114 3-38 (105)
348 cd01782 AF6_RA_repeat1 Ubiquit 32.4 1.7E+02 0.0038 20.3 5.7 47 74-120 21-74 (112)
349 PF03931 Skp1_POZ: Skp1 family 32.3 60 0.0013 19.7 2.7 26 1-26 1-29 (62)
350 PTZ00191 60S ribosomal protein 32.2 75 0.0016 23.4 3.6 33 10-42 82-114 (145)
351 PF04126 Cyclophil_like: Cyclo 32.2 46 0.001 23.5 2.5 29 1-30 1-29 (120)
352 PF01376 Enterotoxin_b: Heat-l 31.7 59 0.0013 21.2 2.6 31 3-33 38-68 (102)
353 PF06622 SepQ: SepQ protein; 31.3 2.3E+02 0.0049 22.8 6.3 50 95-146 139-190 (305)
354 cd06538 CIDE_N_FSP27 CIDE_N do 31.2 96 0.0021 20.2 3.6 34 173-206 21-55 (79)
355 PF07933 DUF1681: Protein of u 31.0 99 0.0021 23.2 4.1 93 54-147 64-158 (160)
356 cd06537 CIDE_N_B CIDE_N domain 29.1 1E+02 0.0022 20.2 3.4 47 173-221 21-68 (81)
357 KOG3483 Uncharacterized conser 29.1 1.6E+02 0.0035 18.9 4.6 60 168-227 32-92 (94)
358 cd02413 40S_S3_KH K homology R 28.9 1.7E+02 0.0036 19.0 4.7 27 18-44 47-73 (81)
359 KOG2660 Locus-specific chromos 28.0 53 0.0012 27.5 2.5 47 90-136 167-215 (331)
360 KOG4147 Uncharacterized conser 27.9 37 0.00081 23.5 1.3 19 52-70 93-111 (127)
361 PF03658 Ub-RnfH: RnfH family 27.6 1.9E+02 0.004 19.1 6.2 66 1-71 1-72 (84)
362 cd05736 Ig2_Follistatin_like S 27.2 1.1E+02 0.0023 18.9 3.4 23 183-205 5-27 (76)
363 PF11834 DUF3354: Domain of un 27.1 71 0.0015 20.2 2.4 35 21-56 26-60 (69)
364 PLN02593 adrenodoxin-like ferr 26.9 1.3E+02 0.0029 21.0 4.1 29 1-29 1-29 (117)
365 KOG3391 Transcriptional co-rep 26.1 74 0.0016 23.1 2.6 29 198-226 110-138 (151)
366 KOG3938 RGS-GAIP interacting p 25.7 1.3E+02 0.0028 24.6 4.2 34 16-49 68-102 (334)
367 KOG3391 Transcriptional co-rep 25.5 62 0.0013 23.4 2.1 27 124-150 112-138 (151)
368 KOG2660 Locus-specific chromos 25.4 55 0.0012 27.4 2.1 47 165-211 166-214 (331)
369 PF08756 YfkB: YfkB-like domai 25.1 2.1E+02 0.0046 21.0 4.7 82 20-103 12-100 (153)
370 PF09269 DUF1967: Domain of un 24.6 44 0.00095 21.0 1.1 17 205-221 46-62 (69)
371 PF07971 Glyco_hydro_92: Glyco 24.5 1.3E+02 0.0028 27.1 4.5 58 2-73 443-500 (502)
372 PRK12280 rplW 50S ribosomal pr 24.4 1.3E+02 0.0028 22.6 3.7 39 87-125 23-62 (158)
373 PRK09570 rpoH DNA-directed RNA 24.4 96 0.0021 20.2 2.7 45 174-224 19-63 (79)
374 COG5222 Uncharacterized conser 24.3 1E+02 0.0023 25.5 3.4 30 18-47 22-53 (427)
375 PF08299 Bac_DnaA_C: Bacterial 24.3 33 0.00071 21.6 0.5 19 22-40 1-19 (70)
376 PHA02090 hypothetical protein 23.9 13 0.00029 22.9 -1.2 39 6-44 33-71 (79)
377 PRK08453 fliD flagellar cappin 23.6 3.1E+02 0.0066 25.8 6.7 86 84-169 135-236 (673)
378 cd01816 Raf_RBD Ubiquitin doma 22.9 2.2E+02 0.0048 18.3 4.6 42 156-197 3-44 (74)
379 TIGR03595 Obg_CgtA_exten Obg f 22.5 57 0.0012 20.5 1.4 18 205-222 46-63 (69)
380 PF11305 DUF3107: Protein of u 22.1 1.9E+02 0.004 18.6 3.6 36 1-37 1-36 (74)
381 PF04110 APG12: Ubiquitin-like 21.9 2.5E+02 0.0055 18.6 4.4 33 13-45 18-50 (87)
382 PF13699 DUF4157: Domain of un 21.7 1.3E+02 0.0028 19.4 3.0 45 177-221 5-49 (79)
383 PRK09555 feoA ferrous iron tra 21.4 1.1E+02 0.0023 19.5 2.5 23 206-228 24-46 (74)
384 PF01191 RNA_pol_Rpb5_C: RNA p 21.2 2.1E+02 0.0047 18.3 3.8 47 174-226 16-62 (74)
385 PF04584 Pox_A28: Poxvirus A28 21.1 44 0.00095 24.2 0.7 28 4-31 45-73 (140)
386 PRK13605 endoribonuclease SymE 21.0 1.1E+02 0.0025 21.3 2.6 42 1-42 56-97 (113)
387 PTZ00191 60S ribosomal protein 20.3 1.4E+02 0.003 22.0 3.2 35 86-120 82-116 (145)
388 PF11055 Gsf2: Glucose signall 20.3 2.5E+02 0.0054 24.1 4.9 31 1-31 1-34 (377)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=2e-20 Score=129.43 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.9
Q ss_pred hcccccCCceEEEEEeecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCC
Q 026932 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i 213 (230)
-+++.+-+++++.+++.+.|+++++...|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 026932 214 QKESTLHLVLRLRGG 228 (230)
Q Consensus 214 ~~g~~i~l~~~~~~g 228 (230)
++|++|++.++++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999987
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=2.1e-20 Score=129.28 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=89.3
Q ss_pred ccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhccc
Q 026932 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i 137 (230)
-+++..-+++|+.+++.+.|+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35566677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEeecc
Q 026932 138 QKESTLHLVLRLRGG 152 (230)
Q Consensus 138 ~~~~~i~l~~~~~~~ 152 (230)
+++++|++++++.+|
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999987764
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.83 E-value=1.9e-20 Score=122.62 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++..|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.80 E-value=2.1e-19 Score=118.40 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=2.4e-19 Score=117.37 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=69.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+||+. ++++++|++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 79999999999999999999999999999999999999999999999999999999999988654
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.80 E-value=2.7e-19 Score=117.79 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.5
Q ss_pred CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++..|++ ++++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 999999999997 7895 89999999999999999999999999999999999999999999999999999998754
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=9.2e-19 Score=114.60 Aligned_cols=74 Identities=41% Similarity=0.621 Sum_probs=69.7
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|+++|+. .+++.+++++++||+++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|+++++|++++|+.||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4677776 3689999999999999999999999999999999999999999999999999999999999999997
No 8
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=7.7e-19 Score=113.88 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|++..|+.+.++++|++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++|||.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 9
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=1.1e-18 Score=114.35 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.5
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|+..+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999874
No 10
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.77 E-value=2.5e-18 Score=113.29 Aligned_cols=74 Identities=54% Similarity=0.931 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 11
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.77 E-value=2.1e-18 Score=113.71 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 12
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=1.8e-18 Score=113.16 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=69.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+++.|+++++++++++||++||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999988764
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.76 E-value=2.8e-18 Score=113.23 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=71.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++..|+.+++++++++||.+||++|++..|+|+++|+|+|.|+.|+|+ +|++||+.+++++++......+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999999876544
No 14
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=2.4e-18 Score=112.65 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.4
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|+|++..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|+++++.+++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999887
No 15
>PTZ00044 ubiquitin; Provisional
Probab=99.76 E-value=3.2e-18 Score=112.78 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.+++.||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999987
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=6.7e-18 Score=111.54 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++++++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988653
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.75 E-value=5.2e-18 Score=110.61 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+||.+.|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 18
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.75 E-value=3.8e-18 Score=109.93 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.9
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+.++|+++++++++++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999975
No 19
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=6.8e-18 Score=111.11 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=70.7
Q ss_pred eeeEEEecCCcE-Eeec-cCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 77 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|++.+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||++++++|++++++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 789999999997 6885 89999999999999999999999999999999999999999999999999999988754
No 20
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.74 E-value=7.6e-18 Score=111.00 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++++..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++|++.+++.||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999987
No 21
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.74 E-value=9.6e-18 Score=110.51 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.2
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+++.++++++.||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|++++|++|++.++..||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999887
No 22
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=1.3e-17 Score=110.08 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.0
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.|+|+|+...|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+ +|++||+++|++|+++..+.+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 378999999999999999999999999999999999999999999999999999 99999999999999998887764
No 23
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=1.3e-17 Score=108.19 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.1
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|.|+|++..|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+.+|++||+++|++|++..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999863
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.73 E-value=7.4e-18 Score=109.14 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+++.|+++++++++++||.++|++|++..|+|+.+|+|+|+|+.|+|+.+|++|+|.+++++|+..|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 25
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=2.4e-17 Score=109.41 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeE--EecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l--~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++..|+++.+++++++||.+||.+|++..|+|+++|+| .|+|+.|+|+.+|++||+.+++++++.++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 788999999999999999999999998763
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=3.1e-17 Score=105.70 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.5
Q ss_pred EEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.|+..+|+++.+++++++||+++|++|++..|+|++.|+|+|+|+.|+|+.+|.+|++.++++|++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999875
No 27
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.70 E-value=9e-17 Score=106.10 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=69.7
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCC--CCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 689999999999999999999999999999999999 9999999999999999999999999999999988764
No 28
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=5.9e-17 Score=104.90 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.8
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
|+|++.+|+.+.+++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++||++++++++++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5788999999999999999999999999999999999999999999999999999999999999998753
No 29
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.69 E-value=8.7e-17 Score=103.89 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.3
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+++|+.+++++++++||.+||++|+..+|+|++.|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998764
No 30
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.2e-18 Score=114.18 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+++|+++.|++.++++.|++||..+|.+|++..||||++|+|.|+|+.|+|..|+++||+...+++|+.+++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998877544
No 31
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.69 E-value=1e-16 Score=104.03 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++..|+ .++++++++||.+||++|++..|+|+++|+|.|.|+.|+|+.+|++||+.+++++|+.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999864
No 32
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3e-17 Score=97.62 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+++.|+...++++|.++|..+|++|+...||||.+|+|.|.|+.+.|+.|-++|++..||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999973
No 33
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.68 E-value=8.7e-17 Score=104.18 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.5
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC-ccccccccccCCeEEEE
Q 026932 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~ 70 (230)
++|++. +|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+ .+|++||+.+++.+++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.68 E-value=1.6e-16 Score=102.71 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.3
Q ss_pred EeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
++.+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 356789999999999999999999999999999999999999999999999999999999999998764
No 35
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.7e-17 Score=117.31 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|+++.|++.++++.+++||..+|.+||+..|||+++|+|+|.|+.|+|..+|++|+|...+++|+++++.++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987643
No 36
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.68 E-value=1.3e-16 Score=104.86 Aligned_cols=70 Identities=33% Similarity=0.663 Sum_probs=67.2
Q ss_pred ecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+|+++++++++++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|++++|++|++++++.||+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999985
No 37
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2.5e-16 Score=104.58 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=70.4
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEE--EecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+| .|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 37899999999999999999999999999999999999999999 789999999999999999999999998874
No 38
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=1.9e-16 Score=103.13 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=68.7
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++++++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 678999999999999999999999999999999999999999999999999999999999999999988753
No 39
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=3.7e-16 Score=101.50 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+.. |+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999997 99999999999999999999999999999999999999999999999999999999998863
No 40
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.65 E-value=3.8e-16 Score=102.65 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=64.7
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
++|+++++++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999999999999999987643
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.64 E-value=7e-16 Score=100.08 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=66.1
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+.|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||++++++++++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46888989886 589999999999999999999999999999999999999999999999999999998764
No 42
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.64 E-value=1.9e-15 Score=101.83 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=74.0
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.|.|++..|+.+.+++.+++|+..||++++++.|+|++.++|+|+|+.|+++.|+++|++++|++|++++++.||
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999998
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.62 E-value=1.1e-15 Score=99.00 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.2
Q ss_pred eEEEec-CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCC-CchhhcccccCCceEEE
Q 026932 79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 146 (230)
++|++. +|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+ .+|++||+++|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999987 68999999999998763
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.62 E-value=1.2e-15 Score=99.48 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.3
Q ss_pred CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCcccccCccccccc--cccCCeEEEEE
Q 026932 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~~l~~~~--i~~~~~i~l~~ 71 (230)
|.++||+++|+. |++++++++||++||++|++..+ .|+++|+|.|.|+.|+|+.||++|. +..+.++||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 45555899999999999999885 4579999999999999999999996 99999999973
No 45
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.60 E-value=3.1e-15 Score=97.44 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.5
Q ss_pred eeeEEEecCCcE--EeeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhcc--cccCCceEEEE
Q 026932 77 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~--i~~~~~i~l~~ 147 (230)
+.++|++++++. +.+++++++||++||++|++..+ .|+++|+|+|.|+.|.|+.+|++|+ +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 678999999988 55566899999999999999875 5589999999999999999999996 99999999874
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.60 E-value=3.4e-15 Score=97.24 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe---cCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~---~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.||- +|+++++++++++||++||++|++.+|+|+++|+|++ .|+.+.|+.+|++|++.+++.++++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 5778854 6999999999999999999999999999999999996 8999999999999999999998875
No 47
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.8e-16 Score=91.19 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.0
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|.|.|++++|+.+.++++++++|..+|++++++.||||.+|||+|.|+.+.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999873
No 48
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.59 E-value=1.1e-14 Score=98.14 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=74.9
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|+|++.+|+.+.++|.+++|+..||.+++++.|+|++.|+|+|+|+.|+++.|+.+|++.++++|++++++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999988765
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=4.9e-15 Score=96.21 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=64.9
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
++|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+++|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46788876 8889999999999999999999999999999999999999999999999999999999876
No 50
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2e-16 Score=105.63 Aligned_cols=76 Identities=97% Similarity=1.298 Sum_probs=73.1
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.++++...|++..++++|++||..+|.+|....|+|++.|+|+|+|+.|+|+.||++|+++.-|+|+++.|++||.
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 4678888999999999999999999999999999999999999999999999999999999999999999999994
No 51
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.57 E-value=7.5e-15 Score=93.23 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+|+..+ +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998774
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.57 E-value=9e-15 Score=95.25 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=63.3
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEE---CCeecCCCCcccccCCCCCCEEEEEE
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~---~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
.+.|+ +.|+++++++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++++|+.|+++.
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 35555 57889999999999999999999999999999999996 89999999999999999999998863
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.54 E-value=1.9e-14 Score=93.80 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=60.6
Q ss_pred EEEEE--ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-cCccccccccc-cCCeEEEEE
Q 026932 2 QIFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (230)
Q Consensus 2 ~v~v~--~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~~l~~~~i~-~~~~i~l~~ 71 (230)
+|+|. ...|.++++++++++||++||++|+..+|||+++|+| |+|+.|. |+.+|++||+. +|+++++.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34443 4578999999999999999999999999999999999 9998885 67999999999 779998864
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-14 Score=104.46 Aligned_cols=77 Identities=95% Similarity=1.313 Sum_probs=73.7
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.|+|+...+++..+++++++||..+|.+|++..|||+++|+|+|.|+.|+|+++|+||+|+.-++|+++++++||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999985
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=8e-14 Score=117.18 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|.+++.+++++.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999999 99999999999999999999999999999998887654
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.48 E-value=1.2e-13 Score=87.70 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.2
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCC
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~ 141 (230)
|+|+|+..+ ..+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++||+.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578898888 6899999999999999999999999999999999999999999999999999875
No 57
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.48 E-value=8.8e-14 Score=92.41 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=57.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC-ccccccccccCCeEEEEEE
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~ 72 (230)
..+++|++++||.+||.+|.+.+++||.+|+|+++|+.|.|+ .||++||+.+++++++.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 567889999999999999999999999999999999999875 9999999999999999864
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.46 E-value=2.3e-13 Score=88.73 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=59.1
Q ss_pred EeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeec-CCCCcccccCCC-CCCEEEEEE
Q 026932 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L-~d~~tL~~~~i~-~g~~i~l~~ 223 (230)
+..++.++.+++++++||++||++|+++.|+|++.|+| |.|+.| +|+++|++||++ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44567899999999999999999999999999999999 999888 477999999998 889999864
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.5e-13 Score=113.36 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=70.5
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhC---CCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+++|++|+|+++++|++++...
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 78999999999999999999999999999999998 999999999999999999999999999999999887653
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.42 E-value=3.1e-13 Score=86.82 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.7
Q ss_pred CcCcHHHHHHHHHhHh--CCC-CCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.++||.+||++|+++. +++ +++|+|+|.|+.|+|+.||++|||++|++|+++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5789999999999996 465 9999999999999999999999999999999874
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.41 E-value=2.6e-13 Score=87.16 Aligned_cols=54 Identities=31% Similarity=0.553 Sum_probs=49.4
Q ss_pred ccchHHHHHHHhchhh--CCC-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 171 ~~~tV~~LK~~i~~~~--~i~-~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|++||++|||++|++|+++.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4789999999999996 575 88999999999999999999999999999999763
No 62
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.36 E-value=2.7e-12 Score=82.59 Aligned_cols=68 Identities=66% Similarity=0.966 Sum_probs=63.8
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+..+|+.+.+++++++||.+||.+|+..+|+|+++|+|.|+|+.|+|..+|.+|++.+++.+++..
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36778899999999999999999999999999999999999999999999999999999999988753
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=1.7e-12 Score=88.99 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=63.3
Q ss_pred CeeeEEEecCCcEE-eeccCCcCcHHHHHHHHHhHh-----C--CCCCCeEEEecCcccCCCCchhhcc------cccCC
Q 026932 76 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----G--IPPDQQRLIFAGKQLEDGRTLADYN------IQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~--i~~~~q~L~~~g~~L~d~~tL~~~~------i~~~~ 141 (230)
.+.|.++..+|..+ ++.+++++||++||++|++.+ + .+++.|+|+|.|+.|+|++||++|+ +....
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 45677888888554 788999999999999999666 3 4499999999999999999999999 56667
Q ss_pred ceEEEEEee
Q 026932 142 TLHLVLRLR 150 (230)
Q Consensus 142 ~i~l~~~~~ 150 (230)
++|++++..
T Consensus 84 TmHvvlr~~ 92 (113)
T cd01814 84 TMHVVVQPP 92 (113)
T ss_pred EEEEEecCC
Confidence 888888765
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.33 E-value=5.4e-12 Score=81.14 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.4
Q ss_pred EEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+..+|+.+.+.+++++||.+||++|++.+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5566789999999999999999999999999999999999999999999999999999999988763
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.31 E-value=1.9e-12 Score=88.77 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=63.5
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceeEEecCcccccCccccccc------cccCCeE
Q 026932 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~l~~~g~~l~d~~~l~~~~------i~~~~~i 67 (230)
.|.++..+|. .=+..+++++||++||++|+ ...|+| +++|+|+|.|+.|+|+.||++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 5677788884 55788999999999999999 555666 99999999999999999999999 6777899
Q ss_pred EEEEEec
Q 026932 68 HLVLRLR 74 (230)
Q Consensus 68 ~l~~~~~ 74 (230)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9998874
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.30 E-value=1.4e-11 Score=80.03 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=64.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.+.+++.+|+.+.+.+.+++++..|++.++++.|+|+ +.++|+|+|..|++++|++++|+++|++|.+..
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 46788888999999999999999999999999999999 999999999999999999999999999999863
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.29 E-value=5.5e-12 Score=106.61 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.2
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
.++|+||+.++ ++.+.|..+.||.+||+.|..++++++++++|+|.|+.|+|+.||..|||.+|.+|||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47899999888 789999999999999999999999999999999999999999999999999999999998754
No 68
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.28 E-value=1.1e-11 Score=80.46 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+..+|+.+.+.|.+++++..|+++..+..|+|+ +..+|+|+|+.|+++.|++++|+.+++.+++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999998863
No 69
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.28 E-value=8.1e-12 Score=83.11 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=55.9
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCC-CCchhhcccccCCceEEEEE
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~i~l~~~ 148 (230)
...++|++++||.+||..|.+.+++||..|+|+++|+.|.| .+||++||+.++++|.+.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 35788999999999999999999999999999999999965 77999999999999988764
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.26 E-value=8.7e-12 Score=105.42 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=68.2
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
+.|+|++... ++.+.|..+.||.+||++|...++.|+++++|+|.|++|+|+.||..|||++|++|||+.+..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 5678887766 899999999999999999999999999999999999999999999999999999999999853
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.26 E-value=1.2e-11 Score=99.45 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+||++.|.+|++++.|++||.++|.+|+...| .|+++|+|+|+|+.|.|+.++.+|++..+.-+.+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999877766543
No 72
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.25 E-value=2.1e-11 Score=83.23 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=64.8
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCcccccccc-------ccCCeEEEEEE
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-------~~~~~i~l~~~ 72 (230)
|.||++....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+ ...+.+.|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 88999998776 67899999999999999999999999999999977799999999999999 44566777766
Q ss_pred e
Q 026932 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
-
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 3
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.20 E-value=3.1e-11 Score=97.16 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=71.0
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||++.++.|++++.+++||.++|.+|+...| +|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999998888765
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.18 E-value=1.4e-10 Score=77.50 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=57.7
Q ss_pred EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCc-----cc-ccCccccccccccCCeEEEE
Q 026932 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~-----~l-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|+... ....+.++++++||.+||++++..+|+||+.|+|. +.|+ .| +|..+|+.||+.+|.+||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 46666643 34455669999999999999999999999999996 7776 35 56789999999999999986
No 75
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.16 E-value=2.4e-10 Score=71.72 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=65.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec--C---cccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g---~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
++|+|+-.++..+.+.|+|..+|.++|++|....|++- .|+|.|+ | +.|.+..+|++|||.++.+|.++...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999998 9999996 2 67889999999999999988876543
No 76
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.07 E-value=7.5e-10 Score=73.92 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=56.8
Q ss_pred EEEEeec-CceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026932 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~-~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~-----~L-~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.+.+.. ....+..++++.||.+||++++..+|+|++.|+|. |.+. .| +|.++|++|++++|++|++.=
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4444432 33466669999999999999999999999999995 7887 45 788999999999999999863
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.07 E-value=7.5e-10 Score=74.58 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=56.5
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-C------ccc-ccCccccccccccCCeEEEE
Q 026932 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g------~~l-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|....- ......+++++||.+||.+|+..+|+|++.|+|.+. . ..+ +|..+|..||+.+|.+||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 467766655 488899999999999999999999999999999976 1 223 56799999999999998875
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.06 E-value=6.6e-10 Score=75.92 Aligned_cols=70 Identities=30% Similarity=0.431 Sum_probs=62.7
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGGF 230 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i-------~~g~~i~l~~~~~~g~~ 230 (230)
...++.+.+.+++||.+||++|+.-...||++|+|+..+.+|+|++||++||+ +..+++-|.+|...|.|
T Consensus 10 ~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 10 HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 44568889999999999999999999999999999977789999999999999 77999999999766654
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.00 E-value=2.9e-09 Score=68.88 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=67.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+++++..|+++.+++.++.+|..+|.+|+...|+|+..|++.+.|+.|.|+.++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577889999999999999999999999999999999999999999999999999999999999999987653
No 80
>PLN02560 enoyl-CoA reductase
Probab=98.98 E-value=1.6e-09 Score=89.22 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.7
Q ss_pred CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceeEEec---C----cccccCccccccccccCCeEEE
Q 026932 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~l~~~---g----~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+..+|+.. ++++++++||.|||.+|++..++ ++++|+|.+. | ..|+|+.+|+++|+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999987 79999999999999999999997 8999999983 3 3789999999999999998666
Q ss_pred E
Q 026932 70 V 70 (230)
Q Consensus 70 ~ 70 (230)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.96 E-value=3.8e-09 Score=71.14 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=55.1
Q ss_pred eEEEEeecC--ceEEEEeeccchHHHHHHHhchhhCCCCCceEEEEC-C------eec-CCCCcccccCCCCCCEEEEE
Q 026932 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~~--~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~-g------~~L-~d~~tL~~~~i~~g~~i~l~ 222 (230)
.+.|..... ...+..++.+.||.+||.+++..+|+|++.|+|.+. . ..+ +|.++|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 345554443 478899999999999999999999999999999854 1 234 67899999999999999975
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.85 E-value=1.3e-08 Score=71.22 Aligned_cols=74 Identities=30% Similarity=0.498 Sum_probs=55.2
Q ss_pred CeeeEEEecCCc-EEeeccCCcCcHHHHHHHHHhHhC-------CCCCCeEEEecCcccCCCCchhhcccccCC------
Q 026932 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (230)
Q Consensus 76 ~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~------ 141 (230)
.+.+.+...+|. ..++.+++++||++||+.|.+.+. ..++.+||+|.|+.|+|+.+|+++.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 356677777888 788999999999999999998763 235679999999999999999999988776
Q ss_pred ceEEEEEe
Q 026932 142 TLHLVLRL 149 (230)
Q Consensus 142 ~i~l~~~~ 149 (230)
++|++++.
T Consensus 82 vmHlvvrp 89 (111)
T PF13881_consen 82 VMHLVVRP 89 (111)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecC
Confidence 45555543
No 83
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.83 E-value=3.7e-08 Score=63.53 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=67.1
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
+++....|+...+++.+..+++.+|.+|+...|+|++.|++.+.|+.|.|+.++.+|+|..++++++..++.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 3455577899999999999999999999999999999999999999999999999999999999999988764
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.82 E-value=1.3e-08 Score=83.90 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=60.4
Q ss_pred eeeEEEecCCcEE---eeccCCcCcHHHHHHHHHhHhCC-CCCCeEEEec---C----cccCCCCchhhcccccCCceEE
Q 026932 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~~---g----~~L~d~~tL~~~~i~~~~~i~l 145 (230)
|+|.|+..+|+.+ .+++++++||++||++|+++.++ ++++|+|.+. | ..|+|+++|+++|+++++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5688888888876 79999999999999999999985 8999999973 3 3789999999999999998755
Q ss_pred E
Q 026932 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.2e-08 Score=93.01 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
.|.||+++.++.++.|+..+||.++|..|..+..|+.+.||++|+|+.|.|++++.+|++ +|-++|++-++.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 99999999987643
No 86
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.3e-08 Score=92.82 Aligned_cols=76 Identities=33% Similarity=0.567 Sum_probs=71.7
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeeccee
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
.|+||+++.++.+|.+...+||.+||..|.++.+|+.+.|||+|.|+.|.|++++++|++ +|-+|||+-|.+++..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~~ 79 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQTH 79 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCcc
Confidence 488999999999999999999999999999999999999999999999999999999999 9999999999776543
No 87
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.70 E-value=2.5e-08 Score=65.68 Aligned_cols=70 Identities=29% Similarity=0.430 Sum_probs=43.2
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC---eec--CCCCcccccCCCCCCEEEEE
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g---~~L--~d~~tL~~~~i~~g~~i~l~ 222 (230)
.|.+.+++.+| ...+++++++|+.+|+++|++.+++|.+.+.|+.+. ..+ .++++|+++|++.||.|++.
T Consensus 4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 45677777665 677899999999999999999999999999886322 355 57899999999999999874
No 88
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.68 E-value=1.8e-07 Score=65.48 Aligned_cols=73 Identities=30% Similarity=0.497 Sum_probs=54.1
Q ss_pred eEEEEeecCc-eEEEEeeccchHHHHHHHhchhhC----C---CCCceEEEECCeecCCCCcccccCCCCCC------EE
Q 026932 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG----I---PPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 219 (230)
Q Consensus 154 ~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~~----i---~~~~~~l~~~g~~L~d~~tL~~~~i~~g~------~i 219 (230)
.+..+..+|+ ..++.+++++||++||+.|...+- . .++.++|+|.|+.|+|+.||+++++..|+ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3444556787 789999999999999999998872 1 34579999999999999999999998776 56
Q ss_pred EEEEEec
Q 026932 220 HLVLRLR 226 (230)
Q Consensus 220 ~l~~~~~ 226 (230)
||++|..
T Consensus 84 Hlvvrp~ 90 (111)
T PF13881_consen 84 HLVVRPN 90 (111)
T ss_dssp EEEE-SS
T ss_pred EEEecCC
Confidence 7777643
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.66 E-value=1.1e-07 Score=62.48 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.7
Q ss_pred CCcCcHHHHHHHHHhHhC-CCCCCeEEE--ecCcccCCCCchhhcccccCCceEE
Q 026932 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999999986 689999996 7899999999999999999998765
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.65 E-value=9.3e-08 Score=62.77 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=53.1
Q ss_pred EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceeEE--ecCcccccCccccccccccCCeEEE
Q 026932 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-i~~~~q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|.++... .....+++ ++++||.+||..|....+ +++++|+|+ +.|+.|.|+.+|++||+.+++++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 34555544 32222444 588999999999999976 579999997 6789999999999999999998765
No 91
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.4e-07 Score=61.30 Aligned_cols=77 Identities=17% Similarity=0.419 Sum_probs=70.9
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|+..++....+.+..++....|++..|++.|++-+.++++|+|+.+.+..|.++++.++|+.|.+..-+.||.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45566666677889999999999999999999999999999999999999999999999999999999999999884
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.57 E-value=2.4e-07 Score=60.96 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---ccc--ccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|-|.|++.+| ++.+++++++|+.+|+++|++.+++|.+.|.|+.+. ..+ ++..+|+++||+.|+.+++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5677877765 566789999999999999999999999999987542 344 46799999999999998774
No 93
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.51 E-value=1.9e-07 Score=61.62 Aligned_cols=65 Identities=29% Similarity=0.448 Sum_probs=56.4
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cC-cccccCccccccccccCC
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g-~~l~d~~~l~~~~i~~~~ 65 (230)
|.+|++....+ ++.++..++.||.+||++++....-|++.|+|+. .. +.|+|.+||+++|+.+..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ 68 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT 68 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence 67888877655 6789999999999999999999999999999997 43 889999999999986543
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.48 E-value=6.5e-07 Score=55.47 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=60.5
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|....+.+.+++|+.++|.++...+|+++..|.|+++|..+.+...+.++++..++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4445788999999999999999999999999999999999999999998888899999999988763
No 95
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.43 E-value=1.6e-06 Score=54.67 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=60.8
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC-----cccCCCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
++|+|+..+...+.+.|+|..+|..+|++|....+++- .|+|.|.. +.|.+..+|++|||-.+..|.++.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 46889888999999999999999999999999999887 89999852 567899999999998877776654
No 96
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-06 Score=57.19 Aligned_cols=79 Identities=16% Similarity=0.428 Sum_probs=72.0
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..+.+.|+..++....+.|..+++...|+...+++.|++.+..|+.|+|+.+.+..|-.+.+..+|+.|.++....+|.
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4566777777788889999999999999999999999999999999999999999999999999999999998877664
No 97
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.40 E-value=1.4e-06 Score=53.86 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=58.1
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+++...+.+.++.|+.++++.++++.|.+++.+.|+++|..+.+...+.++++.+|++|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 577788888899999999999999999999999999999999998888899999999998864
No 98
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-07 Score=57.82 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=60.7
Q ss_pred EEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
.+...-|+...+.+.+++||.++|+.|+..+|..++...|-..+...+|.-+|++|.|.+|..+.+..
T Consensus 5 ~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 5 VLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred hhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 34455588999999999999999999999999999999998778899999999999999999988754
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.4e-07 Score=56.45 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.4
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+.++..-|+...+.+.+++||+++|..|++.+|-.++...|.-.+....|.-+|++|.+.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666778999999999999999999999999999999999888888999999999999998777654
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.7e-06 Score=69.71 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=65.2
Q ss_pred CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE-EEe
Q 026932 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~-~~~ 73 (230)
|.|.|... ....++++|+.+.+|.+||+.+....|+|+++.+.+|.|++|+++.++..+.+...+.+|++ ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 66777655 33578999999999999999999999999999999999999999999999999999998877 555
No 101
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.9e-06 Score=68.33 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.9
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE-EEe
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~-~~~ 149 (230)
..++++|+.+++|.+||+.++.+.|+|+++.+++|.|++|.++.++..+.+...+.++++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 457889999999999999999999999999999999999999999999999999988887 444
No 102
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=7.9e-06 Score=69.43 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=62.5
Q ss_pred ccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 7 TLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 7 ~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
-+.|+.++++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+..+...+|+++.++++.-..
T Consensus 9 KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 9 KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 5679999988 999999999999999999999999999999999999999999999999999997543
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.08 E-value=1.1e-05 Score=50.67 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred ecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
.+++...+.+.+++++.++-+..|.++++.++.+.|.|+++.++-+.+++-.|+.+|+.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 56788999999999999999999999999999999999999999999999999999999875
No 104
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.7e-06 Score=53.49 Aligned_cols=77 Identities=17% Similarity=0.382 Sum_probs=70.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.+...++.++-+.+..+++...|....+.+-|-.-+..+++|+|+..+.++|..+++.++|+.|..+..+.||.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 44555666788999999999999999999999999999999999999999999999999999999999988888885
No 105
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.8e-05 Score=67.34 Aligned_cols=71 Identities=24% Similarity=0.427 Sum_probs=64.5
Q ss_pred EEEEeecCceEEEE-eeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 155 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 155 i~v~~~~~~~~~~~-v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
+.|+ +.|+.+.++ ++.++|+..||.++...+|+||++|++++.|..+.|+..+...+|++|.+++++....
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 4455 788999988 9999999999999999999999999999999999999889999999999999987544
No 106
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.88 E-value=2.7e-05 Score=51.57 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cC-cccCCCCchhhccccc
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 139 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g-~~L~d~~tL~~~~i~~ 139 (230)
+..++.++.+++.||.+||.+++....-|+++|+|.. .. +.|+|.++|+++|...
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 4456788999999999999999999999999999985 33 7789999999998754
No 107
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.87 E-value=6.4e-05 Score=47.20 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.9
Q ss_pred ecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEE
Q 026932 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 83 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
..+++++.+.+.+++++.++-+..+++++++++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467889999999999999999999999999999999999999999999999999999998754
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.62 E-value=0.00024 Score=46.72 Aligned_cols=68 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce------eEE-ecCcccccCccccccccccCCeEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ------RLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q------~l~-~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
+|+|...+|+.+.+.+..+.||.+|...+-+..+.+.... .|. .+|..|+++.+|+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5667665578999999999999999999999998755332 233 4578999999999999999999876
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.62 E-value=0.00017 Score=47.43 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=47.9
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCC---C---ceEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~---~---~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
+.+...+++.+.+.++.+.++.+|...+.+..+.+. . .+.|. -+|..|+++.||+++||.+|+.+.+
T Consensus 5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 444443467899999999999999999999887532 2 35666 6789999999999999999999986
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.51 E-value=0.0011 Score=43.82 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=58.4
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCc-eEEE--ECCeecCCC--CcccccCCCCCCEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~--~~g~~L~d~--~tL~~~~i~~g~~i~l~ 222 (230)
..|.++..+|+.+.-.+.+++|+.+|..-|......+... +.|+ |..+.+.+. +||++.|+.++++|.|-
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 4577888899999999999999999999999987766654 8886 666777543 69999999999999763
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.38 E-value=0.0011 Score=49.16 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=57.9
Q ss_pred eeEEEEeecC----ceEEEEeeccchHHHHHHHhchhhCCCCCce-EEEE-CCeec--CCCCcccccCCCCC----CEEE
Q 026932 153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 220 (230)
Q Consensus 153 ~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~-~l~~-~g~~L--~d~~tL~~~~i~~g----~~i~ 220 (230)
++++|.+.+| .++.+.+++++||.+|+..|....+++...+ .|.. .++.+ .++..+..+.-.++ -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 3577888888 5788999999999999999999999988874 4553 34444 45666676655444 4788
Q ss_pred EEEEecCC
Q 026932 221 LVLRLRGG 228 (230)
Q Consensus 221 l~~~~~~g 228 (230)
+..++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.35 E-value=0.0016 Score=48.24 Aligned_cols=63 Identities=22% Similarity=0.409 Sum_probs=49.1
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-eEEec-Cccc--ccCcccccccccc
Q 026932 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQK 63 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~-g~~l--~d~~~l~~~~i~~ 63 (230)
|+|+|.+++| .++.+.++++.||.+|+..|....++|+..| .|++. ++.+ .++..++++.-..
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~ 71 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSS 71 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCc
Confidence 7899999999 5899999999999999999999999999885 45553 4555 3445555554333
No 113
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.35 E-value=0.0018 Score=42.59 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.1
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccCC---CCchhhcccccCCceEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l 145 (230)
...|.|+..+|..+.-.+..++|+.++.+-+....+.+.....|. |..+.+.+ +.||.+.|+.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 356888899999999999999999999999977666666778886 55677753 47999999988887754
No 114
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.33 E-value=0.0012 Score=43.40 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=56.7
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d---~~tL~~~~i~~g~~i~l 221 (230)
..|.++..+|+.+...+++++|+.++.+-+....+.....+.|+ |..+.+.+ ++||.+.|+-+++++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45778888999999999999999999999966666666778887 66677743 57999999999988865
No 115
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00025 Score=46.49 Aligned_cols=76 Identities=14% Similarity=0.316 Sum_probs=66.9
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
..+.+.|...++..+.+.+..++|...|....+.+.|-..+..|+.|+|+.++.++|..+.+..+++.|.++....
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQv 98 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQV 98 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHh
Confidence 3566777777888999999999999999999999999999999999999999999999999999999886654433
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.25 E-value=0.0029 Score=41.72 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=57.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEE--ecCcccccC--ccccccccccCCeEEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~--~~g~~l~d~--~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|..+.-...+++||.+|...|......+... -.|. |..+.+.+. .||++.|+.+++++++.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 688999999999999999999999999999998877764 3444 455666654 69999999999988763
No 117
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.16 E-value=0.0015 Score=44.52 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=39.4
Q ss_pred EeeccC--CcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhccc
Q 026932 89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI 137 (230)
Q Consensus 89 ~~~~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i 137 (230)
+.++++ .++||..||..|.+..+ ..-.+++|+|+|+.|.|...|...-.
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 555555 78899999999999984 44567899999999999888776543
No 118
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.09 E-value=0.0039 Score=40.89 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.8
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d---~~tL~~~~i~~g~~i~l 221 (230)
..|.++..+|+.+.-.++.++|++++..-|....+-+ ..+.|+ |-.+.+.+ ++||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3577888899999999999999999999998775433 557776 77788853 58999999999999876
No 119
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.07 E-value=0.0045 Score=40.60 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=53.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccc---CccccccccccCCeEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d---~~~l~~~~i~~~~~i~l 69 (230)
+|.|+..+|....-..+.++|+.+|...|+...+-+....... |..+.+.+ +.||.+.|+.+.+++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999997765443333322 56677753 58999999998888765
No 120
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.93 E-value=0.0058 Score=39.82 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=49.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccc---CccccccccccCC
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d---~~~l~~~~i~~~~ 65 (230)
+|.|+..+|..+.-..+.++||.+|.+.|.....-+.....+. |..+.+.+ +.||.+.|+.+..
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 5789999999999999999999999999988765433333322 55666754 7999999999433
No 121
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.93 E-value=0.0071 Score=39.67 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=53.0
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCC-CCCCeEEE--ecCcccCC-CCchhhcccccCC
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~ 141 (230)
...|.|+..+|+.+.-.++.++||.+|.+-|....+- ......|. |-.+.+.| +.||.+.|+.+..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 4578889999999999999999999999999987643 23567776 66777754 7899999998643
No 122
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.91 E-value=0.0075 Score=39.30 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=51.7
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEE
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTL 219 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~---d~~tL~~~~i~~g~~i 219 (230)
.|.++..+|+.+...++.++|+++|.+-|.....- ...+.|+ |-.+.+. .+.||.+.|+.+...+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 57788889999999999999999999999877433 5667776 6667774 5899999999954443
No 123
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.87 E-value=0.011 Score=38.91 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=58.9
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccC---CCCchhhcccccCCceEEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~ 147 (230)
.-+|.|+..+|+...-....++++.+|-..+.. .|.+++...|+ |-.+.+. .+.||.+.|+.+.+++.+--
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 346888999999999999999999999999988 57888889888 5556663 35799999999999886643
No 124
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.86 E-value=0.011 Score=39.33 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=55.3
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEec--CcccC--------CCCchhhcccccCCceEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~~L~--------d~~tL~~~~i~~~~~i~l 145 (230)
..+|.++..+|+.+.-.+..++|+.+|..-|.. .+..+....|+.+ .+.+. .+.||.+.|+.+..++.|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 467888999999999999999999999999964 4556678888854 46675 367999999998776654
No 125
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.82 E-value=0.0077 Score=39.50 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=50.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceeEE--ecCccccc-CccccccccccCCe
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~l~--~~g~~l~d-~~~l~~~~i~~~~~ 66 (230)
+|-|+..+|+.+....+.++||.+|.+.|....+-+ ...-.|. |..+.+.+ +.||.+.|+.+...
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 588999999999999999999999999999876433 1223343 66777766 68999999986443
No 126
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.81 E-value=0.011 Score=38.99 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L---~d~~tL~~~~i~~g~~i~l~~ 223 (230)
-.|.++.++|+...-.+..++++++|..-+.. .|.+++.+.|+ |-.+.+ +.+.||.+.|+.+..++.|--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 35778889999999999999999999999998 47888999998 666766 345899999999999998754
No 127
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.81 E-value=0.0026 Score=50.01 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=54.2
Q ss_pred CEEEEEccCCc-EEE-EEecCCCcHHHHHHH-hhhhhCCCCCceeEEe----cCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAK-IQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~-~~v~~~~tv~~lK~~-i~~~~gi~~~~q~l~~----~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|++...+++ ... ...+..+||.|++.+ ..+...+.+.++++.+ .|+.+-|+.+|++|+..++.++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 78999888763 333 677888999999955 4555778886666664 4899999999999999999776553
No 128
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.77 E-value=0.016 Score=38.10 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=57.9
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccC---CCCchhhcccccCCceEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~ 146 (230)
..+|.++..+|....-.+..++++.+|-.-+... |.++...+|+ |--+.+. .+.||.+.|+.+..++.|-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4578888999999999999999999999999875 7777888887 5567663 3579999999988887653
No 129
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.75 E-value=0.012 Score=38.73 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=58.6
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L---~d~~tL~~~~i~~g~~i~l~ 222 (230)
...+.++..+|+...-.+..++++++|..-+... |.++..+.|+ |-.+.+ +.+.||.+.|+.+..++.|-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567788889999999999999999999999876 7778889997 666766 34679999999999998764
No 130
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.72 E-value=0.013 Score=38.93 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=55.9
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEE--CCeecC--------CCCcccccCCCCCCEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--------DGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~--~g~~L~--------d~~tL~~~~i~~g~~i~l~ 222 (230)
..|.++..+|+.+.-.+..++|+++|..-|... +..++.+.|+. -.+.+. .+.||.+.|+.+..++.|-
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 467788889999999999999999999999654 55668899884 347774 4689999999998888663
No 131
>PRK06437 hypothetical protein; Provisional
Probab=96.71 E-value=0.017 Score=36.54 Aligned_cols=62 Identities=19% Similarity=0.388 Sum_probs=48.4
Q ss_pred EeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+..+++...++++...|+.+|-+.+ ++++....+..+|.... .++-+++||.|.++--..||
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 3335567888888889999887554 78888888889999887 56678899999887755554
No 132
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0036 Score=47.96 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=57.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.++.+.+.+..-+|+.++|.+++...|+.+..|+++++|..+-+...|..+++..+.+..+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 356778888899999999999999999999999999999999999999999999998766554
No 133
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.65 E-value=0.017 Score=45.51 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC---ceeEE--ecC---cccccCccccccccccCCeEEEEEEec---------
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLR--------- 74 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~q~l~--~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~~--------- 74 (230)
.+.+.|+.+.||.||-.++....+++.+ .-+++ +++ +.++.+..+.+. .+...+.+-.-+.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 5789999999999999999999999875 33333 244 346666667655 2222333322121
Q ss_pred -CCeeeEEEec-------CCcEEeeccCCcCcHHHHHHHHHhHhCCCC
Q 026932 75 -GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 75 -~~~~v~v~~~-------~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
+.+.|.|... .|-.|.+.|.+..|..++|++|+++.|++.
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233444332 367788999999999999999999999874
No 134
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.57 E-value=0.0055 Score=41.81 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=38.7
Q ss_pred eEEEEee--ccchHHHHHHHhchhhCC--CCCceEEEECCeecCCCCcccccC
Q 026932 164 TITLEVE--SSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 164 ~~~~~v~--~~~tV~~LK~~i~~~~~i--~~~~~~l~~~g~~L~d~~tL~~~~ 212 (230)
...+++. .+.||..||++|.+..+- .-.+++|+|+|+.|.|+..|+..-
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 3566666 789999999999999832 334689999999999988776543
No 135
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.50 E-value=0.0074 Score=47.55 Aligned_cols=69 Identities=29% Similarity=0.400 Sum_probs=49.8
Q ss_pred eeeEEEecCC-cEEe-eccCCcCcHHHHHHHHHhHh-CCCCCCeEEE----ecCcccCCCCchhhcccccCCceEE
Q 026932 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g-~~~~-~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~----~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
|.|++...++ .... ...+...|+.|++.++.++. .+.+.++|+. -+|+.|-|+.+|++|+..+|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566665554 3333 56777889999997776654 5777555554 3689999999999999999977654
No 136
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.35 E-value=0.016 Score=36.74 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=54.5
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCC-----CCCeEEEecCcccCCCCchhhcccccCCceEE
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.+-++..+|.++.+.++.-.++..|-..+.+...+. -+.++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 344456789999999999999999988887776532 23456777899999999999999999997754
No 137
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0071 Score=46.40 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=56.3
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.++.+.+.+..-+|+.++|.++++..++.+..|+++++|..+-|...|..|++..|....+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 56778889999999999999999999999999999999999999999999999999765443
No 138
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=96.07 E-value=0.029 Score=34.49 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=52.1
Q ss_pred cCceEEEEeeccchHHHHHHHhchhh---CCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~---~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
+|+...++.+.+....-...+--+.. |-|+++..|. -.|..++-++.+++||+.+|-++++.++.-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 56777777777766666655555544 4689999998 788999999999999999999999998743
No 139
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.05 E-value=0.067 Score=34.01 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred EEeecCceEEEEeeccchHHHHHHHhchhhC--CCC-C--ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026932 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPP-D--QQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~--i~~-~--~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
.+..+|.++.+.++..-++..|-..+.+... +++ + .++..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3556789999999999999888777766554 333 2 356778899999999999999999998865
No 140
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=95.94 E-value=0.065 Score=35.66 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=46.7
Q ss_pred ceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECC----eec-CCCCcccccCCCCCCEEEEEEEecCCCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG----KQL-EDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g----~~L-~d~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
..++..++..+||..+.+.+++.+.+ ....||- +.. ..| +.+.|+.+.|+.+|.+|.+-.|-.-|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 36778889999999999999999999 6667774 222 345 5678999999999999999888877765
No 141
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=95.86 E-value=0.096 Score=41.22 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=56.6
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCC---CeEEE--ecCc---ccCCCCchhhcccccCCceEEEEE------ee--
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLR------LR-- 150 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~tL~~~~i~~~~~i~l~~~------~~-- 150 (230)
+.+.+-|+.+.||++|...++++.+++.+ ..++. ++++ .+..+.++.+. .+...+.+-.- ..
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998765 45554 4553 45667777765 22222322211 11
Q ss_pred --cceeEEEEee-------cCceEEEEeeccchHHHHHHHhchhhCCCC
Q 026932 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 151 --~~~~i~v~~~-------~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 190 (230)
+...+.|... .|-.+.+.+.+..|..++|++|.+++|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233333322 255688899999999999999999999864
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.80 E-value=0.13 Score=41.52 Aligned_cols=107 Identities=17% Similarity=0.349 Sum_probs=72.3
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC------cccCCCCchhhcccccCCceEEEEEeec------------
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 151 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~tL~~~~i~~~~~i~l~~~~~~------------ 151 (230)
.+-|+.+++|+++-..|.+..|+|++.--++|.- ..++...++....+.+|+.|-+-.....
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 3567889999999999999999999877777642 4467889999999999998866654321
Q ss_pred --------ceeEEEEee---cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 152 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 152 --------~~~i~v~~~---~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
.+.+.++.. .+..+.+.++...|-.+|-++|+++.+++|+..+|.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 134444432 234799999999999999999999999999999987
No 143
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.80 E-value=0.075 Score=34.59 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=50.7
Q ss_pred EEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEE----CC--eecCCCCcccccCCC--CCCEEEEEEE
Q 026932 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVLR 224 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~----~g--~~L~d~~tL~~~~i~--~g~~i~l~~~ 224 (230)
|+..+|+...+++++++|+.+|-++|++..++... .+=|.+ +| .-|+.+++|.++... +..++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 45678889999999999999999999999998654 445666 22 356888999999887 4444544443
No 144
>PRK06437 hypothetical protein; Provisional
Probab=95.78 E-value=0.098 Score=33.06 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=49.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.-+++..+++...+++..+.||.+|=+. .|+++..-.+..||..+. .++-+++++++.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 45567677778899999999999998876 688887777778998887 556677888888764
No 145
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.058 Score=41.44 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=49.5
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecC-----ccc-CCCCchhhcccccCCceEEEEE
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L-~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
...+.+.+.|+++||.+++-.+|.+++.+.|. |.| ..| +++..|..|...+|-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 45667889999999999999999999999987 554 235 4577899999999988887643
No 146
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.046 Score=41.96 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=50.1
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g-----~~L-~d~~tL~~~~i~~g~~i~l~~ 223 (230)
.....+++.|+++||.+++..+|.+++.+.|- |++ ..| +++..|..|...+|..||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 45667789999999999999999999999886 766 356 567899999999999998763
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.29 E-value=0.15 Score=33.48 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=43.9
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
+...++-..++..||+.++.+.++..+.+.++..+..|+++++|-+-|++-.-.+.+.+..
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 4556677888999999999999999999999888877999999999999988888877754
No 148
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.25 E-value=0.038 Score=35.89 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=48.1
Q ss_pred eeccchHHHHHHHhchhhC-CCCCceEEEECCeecCCCCccccc-CCCCCCEEEEEEEec
Q 026932 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLR 226 (230)
Q Consensus 169 v~~~~tV~~LK~~i~~~~~-i~~~~~~l~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~ 226 (230)
|.++++|.++++.+..... -....+.|.++|..|++...|+++ |+++|+.+.+..++.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 4678999999999988754 355678889999999999999888 588999999886643
No 149
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.09 E-value=0.091 Score=34.16 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=45.7
Q ss_pred eEEEEeeccchHHHHHHHhchhhCC----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i----~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++...|+.+|.+.+...++- ......+..+|+... .+.-+++||.|.++-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4667777789999999999988532 234566778888776 45679999999988777766
No 150
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.01 E-value=0.12 Score=33.77 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.1
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcc
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++.+.+++..+..+|..+|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999997543
No 151
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.98 E-value=0.14 Score=41.38 Aligned_cols=106 Identities=17% Similarity=0.357 Sum_probs=75.0
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEecC------cccccCccccccccccCCeEEEEEEec--------------
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLR-------------- 74 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g------~~l~d~~~l~~~~i~~~~~i~l~~~~~-------------- 74 (230)
+-|+.+++|.++-..|.+..|.|++...++|.- ..++...|+....+.+|+.|..-....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 678999999999999999999999888877752 557889999999999999987776442
Q ss_pred ------CCeeeEEEec---CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 75 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 75 ------~~~~v~v~~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.|.++.. .+..|.+.++...|-.+|-++|+++.+++|...+|+
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1256666542 345799999999999999999999999999999987
No 152
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.77 E-value=0.068 Score=34.72 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=45.4
Q ss_pred cCCcCcHHHHHHHHHhHhC-CCCCCeEEEecCcccCCCCchhhcc-cccCCceEEEEEe
Q 026932 93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL 149 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~tL~~~~-i~~~~~i~l~~~~ 149 (230)
|.++++|.++++.+..... ..-....|.++|+.|++...|++.. +++++++.++..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5678999999999988765 5566788999999999988887764 7777777766443
No 153
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.49 E-value=0.2 Score=32.86 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=43.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.....++-.+++..||..++.+.|+..+.-.++++...|+++++|.+-++.....+.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3456677889999999999999999999999999987799999999999998888877643
No 154
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.26 E-value=0.16 Score=33.68 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.0
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC---CCeEEEec
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 122 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~ 122 (230)
..++...|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 566788999999999999999999999999999886 46667663
No 155
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.08 E-value=0.84 Score=28.97 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=43.3
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...+++++..|+.+|.+.+ ++++....+..+|....+ +.-+++||.|.+.--..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 5677888888999998766 666777777799988853 6668999999887755554
No 156
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.02 E-value=0.72 Score=29.84 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=45.6
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEe--c--C--cccccCccccccccc
Q 026932 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--G--KQLEDGRTLADYNIQ 62 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~--~--g--~~l~d~~~l~~~~i~ 62 (230)
|..++|...++++++++|+.++=+.|.+..|+.. +.--|.+ . | .=|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 5678999999999999999999999999999874 3355666 1 2 226778888888766
No 157
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.67 E-value=0.39 Score=31.65 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=35.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
|+|.+ +.+|....+.+.++++..+|+++|.+++++.. ..-.|.|.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 34555 44788999999999999999999999999975 34444453
No 158
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.45 E-value=0.5 Score=29.46 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=42.7
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.++++...|+.+|.+.+. +++....+..+|+....+ .-.+.-+++||.|.+.--..||
T Consensus 8 ~~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 345566789999887764 667778888999887643 3445669999999888766665
No 159
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.047 Score=45.01 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=48.1
Q ss_pred CeeeEEEecCC--cEEeeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhcccc
Q 026932 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~ 138 (230)
.+.+.++..+. +...+..+...||++||..++..+. --...|||+|.|+.|.|...+++.=.+
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 34566666654 4466777888999999999999875 224579999999999999888876543
No 160
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.20 E-value=0.37 Score=31.44 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=34.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
++.|++.++.+..+|..+|.++.++|++.-.|.|..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 899999999999999999999999999998999864
No 161
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.07 E-value=0.75 Score=28.67 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=43.1
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+.+ + ..|+.+|.+.+ ++++....+-.++.... .....+.-+++||.|.++--..||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 4566665 3 35899988765 56666666778998876 345667789999999888766655
No 162
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=93.07 E-value=0.64 Score=28.90 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=41.3
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++++...|+.+|.+.+ ++++....+..+|.....+ ...++-+++||.|.+.--..||
T Consensus 8 ~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 8 VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 3445677899988765 4667777777999887533 3456679999999888766555
No 163
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.01 E-value=0.26 Score=32.70 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=37.5
Q ss_pred EEEeecCceEEEEeeccchHHHHHHHhchhhCCCC---CceEEEECC
Q 026932 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 199 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~---~~~~l~~~g 199 (230)
..+...|+.+.+.+.++..+.+|++.|.++.|+.. ..+.|.|-.
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlD 50 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVD 50 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEc
Confidence 45667899999999999999999999999999876 577887733
No 164
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.95 E-value=0.51 Score=30.26 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=38.9
Q ss_pred EEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC
Q 026932 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g 199 (230)
.+..++|+...+.+.+..|+.++-++++++.|+.++...++..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45668899999999999999999999999999999988887544
No 165
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=92.67 E-value=0.51 Score=30.25 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.5
Q ss_pred eEEEEeeccchHHHHHHHhchhhCC--CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i--~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...+.+....||.+|.+.+..+..- ......+..+|+...+ .-.+.-+++||+|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677788899999999999998621 2366788899998887 3666778999999887766655
No 166
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.62 E-value=0.39 Score=31.12 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=43.1
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCC----CCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+++|+.|.++....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4667788889999999999988642 334566778888876 3456788999988754443
No 167
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.58 Score=42.71 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=98.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--e--cCccc--ccCccccccccccCCeEEEEEE--e-cCCeeeEEE
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVLR--L-RGGMQIFVK 82 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~--~g~~l--~d~~~l~~~~i~~~~~i~l~~~--~-~~~~~v~v~ 82 (230)
.+.+.|+.-.+++.+|+.|++..++|.+.-+++ + ||..+ .++.||++ +..+.+|.+.+- + .+...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 567889999999999999999999999876665 2 22223 34567754 445555544431 1 122223332
Q ss_pred ec----CC-cE----EeeccCCcCcHHHHHHHHHhHhC--------CCCCCeEEEec-----CcccC-CCCchhhcc---
Q 026932 83 TL----TG-KT----ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQLE-DGRTLADYN--- 136 (230)
Q Consensus 83 ~~----~g-~~----~~~~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~L~-d~~tL~~~~--- 136 (230)
.+ +. .. +..-+..++|+.+.|..+-.... +...+.|+... |+.+. ++.++.+..
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 22 11 11 23446788999998876554432 33334444322 23333 333343332
Q ss_pred ---------------cccCCceEEEEEeecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 137 ---------------IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 137 ---------------i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
.+.++.+.+++|...+-.+.+. +--++.+ ..+.+.++++.+.+-.|||.++..+.
T Consensus 1036 ~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~----pFQEV~L-d~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVN----PFQEVLL-DANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred HHHHHHHHHHhhcccCCCCccchhhheeccccceecC----CceeEEe-cCcchHHHHHHHHHhcCCchhhhhhh
Confidence 1233344444443322222111 1112222 24568999999999999999987765
No 168
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=92.49 E-value=0.68 Score=30.85 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=41.5
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-c---C-ccc-CCCCchhhcccccCCceEEEEEe
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQL-EDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~---g-~~L-~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+...++..+||+.+...+.+.+.| ....||.- . + ..| +.+.|+.+.|+.+|-.|.+-.+.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 5667788999999999999999999 66688752 1 2 235 34679999999999877665544
No 169
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=92.20 E-value=0.041 Score=45.04 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=0.0
Q ss_pred cchHHHHHHHhch----------hhCCCCCceE-----EEECCeecCCCCcccccCCC-------CCCEEEEEEEecCCC
Q 026932 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGGG 229 (230)
Q Consensus 172 ~~tV~~LK~~i~~----------~~~i~~~~~~-----l~~~g~~L~d~~tL~~~~i~-------~g~~i~l~~~~~~g~ 229 (230)
+.+|.++|..++. +.++|.+.++ |+|+-+.+.|++||.+..-. .|.++.+.+-..||+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 5899999999999 7889999999 99999999999999887544 577888877777774
No 170
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.03 E-value=0.99 Score=29.36 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=44.0
Q ss_pred eEEEEeecc-chHHHHHHHhchhhC-C-C-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~-~tV~~LK~~i~~~~~-i-~-~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++.. .|+.+|++.+.+++. + . ...+.+..+++...+ +.-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356777766 899999999999863 1 1 133556688877663 5678999999887766665
No 171
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.02 E-value=1.2 Score=28.19 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=43.7
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|++.+.... ....++++...|+.+|-+.+ ++++....+..||..... +.-+++|+.|.++-..
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V 67 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccc
Confidence 455553221 24567888889999988665 677777777889988854 4557789988776433
No 172
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.01 E-value=0.66 Score=30.35 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=41.7
Q ss_pred ceEEEEeeccchHHHHHHHhchhhC-CCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~-i~~--~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
....++++...|+++|.+.+..+.. +.. ....+..|++... .+.-+++|++|.+.-...||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 4567778888999999999987651 111 2234557887754 34568899999877655555
No 173
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.068 Score=44.09 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=45.5
Q ss_pred eeEEEEeecCc--eEEEEeeccchHHHHHHHhchhhC-CC-CCceEEEECCeecCCCCccccc
Q 026932 153 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 153 ~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~~-i~-~~~~~l~~~g~~L~d~~tL~~~ 211 (230)
+.+.+++.+.+ ..++..+...||++||..++..+- -| +.+|+|+|.|+.|.|...|.+.
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 45666666543 456666778899999999999873 33 3479999999999999988775
No 174
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.80 E-value=0.9 Score=29.49 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.9
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+.++. ++....+.++.+.|..+|+.+|+++++.+.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 44443 677888999999999999999999999887788888874
No 175
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.78 E-value=0.89 Score=29.51 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
|.+.. +|.++.+.++++.|..+|+.+|.+.++++.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 44444 678999999999999999999999999987666777753
No 176
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=91.65 E-value=0.76 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=34.9
Q ss_pred cCCcEEeeccCCcCcHHHHHHHHHhHhCCCC-CCeEEEecCc
Q 026932 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 124 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~ 124 (230)
.+|..+.+.++++.+..+|++.|.+++++.. ....|.|..-
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 4678899999999999999999999999865 6778877653
No 177
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=91.61 E-value=0.68 Score=30.29 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=44.6
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCC--CceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+... | +...+++..+.||.+|.+.+...+. +.. ..-.+..|++... .++-+.+++++.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 678888643 4 5677888899999999999977651 111 1112446776653 34457778888876
Q ss_pred EEe
Q 026932 71 LRL 73 (230)
Q Consensus 71 ~~~ 73 (230)
...
T Consensus 77 Ppv 79 (82)
T PLN02799 77 PPI 79 (82)
T ss_pred CCC
Confidence 543
No 178
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.50 E-value=0.52 Score=39.88 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=55.3
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhC-CCCCCeEEE--ecCcccCC-CCchhhcccccCCc
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~ 142 (230)
+.-.|.|+..+|......++.+.||.+++..|..... -+...+.|+ |-.++|.| +.||++.|+.+-..
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 3467888899999999999999999999999998875 455567776 66788865 67999999987543
No 179
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.47 E-value=1.1 Score=27.93 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=40.7
Q ss_pred cCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.+|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+++|+.|.++-...|
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccC
Confidence 35776666 3 35899888764 66666666778887775 33455667889999988754433
No 180
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=91.39 E-value=1.6 Score=28.87 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=43.1
Q ss_pred eEEEEeeccchHHHHHHHhchhhCC------C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i------~-----~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++ ..||.+|.+.+.+++.- . ...+.+..+|+..+.+.. .-+++|+.|.+.-...||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566665 88999999999888631 0 123556688887764432 668999999888766665
No 181
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.22 E-value=0.8 Score=29.34 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.|-.++|..-.+.+.|+.||.|+=.++.++.|+.++.=.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456678999999999999999999999999999999888888754
No 182
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=91.15 E-value=0.91 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+| ....+++..+.|..+||+++... .-.+.++|-+..++..|. .++++.+.
T Consensus 1 M~I~v-----N~k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~-----e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV-----NEKEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELK-----EGDEVFLI 54 (57)
T ss_pred CEEEE-----CCEEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccC-----CCCEEEEE
Confidence 66666 45567888999999999996553 336789998887766654 45666554
No 183
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.94 E-value=0.71 Score=29.41 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred EEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
.|..++|+...+.+.+..|+.++-..+.++.|+.++...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45578899999999999999999999999999999999888754
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.57 Score=38.75 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=47.2
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEEE---CC-----eecCCCCcccccCCCCCCEEEEEE
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AG-----KQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~---~g-----~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
...+.-.-||.++|+.+..+.|+.+.+++|++ .| ..++.+++|.+|.|++|+.+.+--
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 34455677999999999999999999999985 33 345667899999999999987653
No 185
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=90.35 E-value=3.2 Score=26.40 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=39.8
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC--eecCCCCccc
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLA 209 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g--~~L~d~~tL~ 209 (230)
+.+..++++...+.+.+..|+.+.-..++++.|+.++...++..| +.++-+....
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCcee
Confidence 345668899999999999999999999999999999988776433 4555444433
No 186
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=90.32 E-value=1.5 Score=27.38 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=41.5
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ ++++..|+.+|-+. .++++....+..++..+..+ ..+.+ +++||.|.++--..||
T Consensus 6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence 44444 44567788877654 47888889999999877532 23345 9999999887755544
No 187
>PRK07440 hypothetical protein; Provisional
Probab=90.22 E-value=1.9 Score=27.39 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+. .++....|+.+|-+ ..++++....+-.++..+.- ....+.-+++||.|.++--..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 4444 55567788888775 34677888888899988863 34667779999999888766555
No 188
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=90.08 E-value=2.8 Score=32.18 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=53.1
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEE-C--C---eecCCCCcccccCCC-CCCEEEEEE
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G---KQLEDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~-~--g---~~L~d~~tL~~~~i~-~g~~i~l~~ 223 (230)
...+.|...+|+...+.+++++|++++.+.++.+.|++.. .+-|.+ . + .-++...++.+...+ ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 3567788888999999999999999999999999999543 344542 1 1 245667777777665 345666655
Q ss_pred E
Q 026932 224 R 224 (230)
Q Consensus 224 ~ 224 (230)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 5
No 189
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=90.06 E-value=0.52 Score=39.48 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCC--CCchhhcccccCCceEEEEE
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~ 148 (230)
....+++.+..+-....|+..+....|++.+..-|+|+++++.. +..+..+|+..++++.+--+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 55678888988889999999999999999999999999999965 46899999999998866543
No 190
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=90.04 E-value=1.7 Score=26.92 Aligned_cols=66 Identities=23% Similarity=0.475 Sum_probs=52.0
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhh---CCCCCceeEE-ecCcccccCccccccccccCCeEEEEEEe
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~---gi~~~~q~l~-~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+|....++.+++++..-+..+--... |-|++.=.|- -+|..++-++.+.+||+..+-++.+.++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 478999999999999777776654444 4677765555 46899999999999999999998887653
No 191
>smart00455 RBD Raf-like Ras-binding domain.
Probab=89.99 E-value=1.3 Score=28.24 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.7
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.|-.++|+...+.+.|+.|+.|+=+.+.++.|+.++.-.+++.|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45678999999999999999999999999999999888888755
No 192
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.90 E-value=2.2 Score=26.52 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=42.1
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+++++..|+.+|-+. .++++....+..+|....-. .-.+.-+++||.|.+.--..||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 3455667788887654 47888888888999877643 3455668999999988765554
No 193
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=89.87 E-value=0.99 Score=41.29 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.0
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccc
Q 026932 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l 50 (230)
+.++..+.+-++++.|+..++..|+..+|||...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34577888999999999999999999999999999999987443
No 194
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=89.86 E-value=1.9 Score=28.56 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=45.2
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ ++++..|+.+|-+. .++++....+-.+|..+. ....+.+-+++||.|.++.-..||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45544 44567788888765 367888888889998885 446778889999999988755554
No 195
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.65 E-value=2.2 Score=28.35 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=31.2
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|.||.. +|.+..+.|+++.+..+|..+|.+.+++.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 556654 78999999999999999999999999995
No 196
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.60 E-value=0.1 Score=42.80 Aligned_cols=62 Identities=19% Similarity=0.482 Sum_probs=0.0
Q ss_pred eeeEEEecCCcEEeeccC-----CcCcHHHHHHHHHh----------HhCCCCCCeE-----EEecCcccCCCCchhhcc
Q 026932 77 MQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~-----~~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~tL~~~~ 136 (230)
+.|.++...+..+.+.+. .+.+|.++|..+++ ..++|.+.++ |.|+-+.+.|.+||.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 555566555544444332 25799999999999 8899999999 999999999999998875
Q ss_pred cc
Q 026932 137 IQ 138 (230)
Q Consensus 137 i~ 138 (230)
-.
T Consensus 159 ~~ 160 (309)
T PF12754_consen 159 AD 160 (309)
T ss_dssp --
T ss_pred hc
Confidence 43
No 197
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=89.24 E-value=3 Score=25.99 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=40.4
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+++++..|+.+|.+.+ +.+.....+-.++..+.. ..-+..-+++||.|.+.--..||
T Consensus 10 ~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 10 MQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 3445677899888654 455566777799988752 34556679999999887755555
No 198
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.69 E-value=0.73 Score=38.62 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=62.3
Q ss_pred CEEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC--ccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~--~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.++|.+. .-+.+++++..+-....++..+...+|++...-.++|++..+.++ .++.++|++.++.+.+..+..
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 56666554 556889999999999999999999999999888899999888765 779999999999888765443
No 199
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=88.13 E-value=3.6 Score=25.82 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=43.0
Q ss_pred cCceEEEEeecc-chHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~-~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ +++.. .||.+|-+. .++++....+-.++..+.. ...+.+-+++||.|.++.-..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 45544 44444 578877653 4677888888899988864 34667779999999988755554
No 200
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=87.95 E-value=2.6 Score=27.37 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=41.1
Q ss_pred EEeeccCCc-CcHHHHHHHHHhHhC-C-C-CCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++.. .||.+|++.+.++++ + . .....+..|++...+ +.-+++|+.|.++-...|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 356778866 899999999999874 1 1 133456678877764 456778999877754433
No 201
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.66 E-value=4.4 Score=25.78 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=36.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.|-.++|..-.+.+.|+.||.|+=.++.+..|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678899999999999999999999999999999877777544
No 202
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.53 E-value=3.6 Score=27.33 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=39.8
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchh
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~ 133 (230)
++|.+. .+|....+.++++.+..+|..+|.+++++. ....+.|... .|-.|+.
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 444553 467788999999999999999999999985 5667777654 4444443
No 203
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=87.47 E-value=1.1 Score=37.91 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=53.5
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCC-CCCceEEE--ECCeec-CCCCcccccCCCCCCEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i-~~~~~~l~--~~g~~L-~d~~tL~~~~i~~g~~i 219 (230)
-.|.++..+|+.....++.+.||.+++..|+..-.- +...+.|+ |-.+.| +++.||++.|+.+-..+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 568889999999999999999999999999997643 34455555 666888 67899999999876544
No 204
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=86.86 E-value=2.7 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=33.5
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+++..+.|..+||..+... .=.++++|-...++.. +++|+.|.+.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~-----L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIE-----LKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccc-----cCCCCEEEEE
Confidence 56778888999999876543 3367899988877654 4567777654
No 205
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=86.79 E-value=5.1 Score=25.32 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=44.4
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
-+++++...|+++|-.. .+++++......+|.....+ .-.+.-+++||.|.++--..||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 44566666899988644 47888888889999888743 4567778999999888766665
No 206
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=86.67 E-value=1.5 Score=27.99 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=47.0
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...+.+....||.+|.+.+..+++ .......+..||+...+ .-.+.-+++|+.|.++....|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 556788889999999999988874 13366778889988877 355677889999988754443
No 207
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=86.51 E-value=2.2 Score=26.49 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=41.3
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+. ++++...|+.+|.+.+ +++.....+..+|+.+..+ ...+.-+++|+.|.++....|
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 4554 4456678999988765 5777888888899877543 233456889999987754443
No 208
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=86.22 E-value=6 Score=24.48 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=41.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+.+ ++..+.||.++-.. .|+++..-.+.+||..+... ...+.-+.+++++.++..
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHA 62 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEE
Confidence 56644 56678899988766 68888877777888666543 355566888999888643
No 209
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=85.99 E-value=4.4 Score=26.72 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=41.1
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCC------C-----CCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++ ..||.+|.+.+.++++- . -....+..||+....+.. ..+++|+.|.++....|
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34567776 88999999999888641 0 123556678877654432 56789999987755444
No 210
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.87 E-value=8.2 Score=29.55 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=47.0
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEecC------cccCCCCchhhcccc
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG------KQLEDGRTLADYNIQ 138 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g------~~L~d~~tL~~~~i~ 138 (230)
.+.+.|...+|....+.+++++|+.++...++.+.|++.. ...|.+.. ..++...++.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4567788899999999999999999999999999998542 34555321 235556677766544
No 211
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=85.68 E-value=3.5 Score=26.76 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCcEEe-eccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 85 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 85 ~g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
++.... +.+..+.|..+|+.+|++.++.+.....|.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444 888888999999999999999998888998864
No 212
>KOG4261 consensus Talin [Cytoskeleton]
Probab=85.40 E-value=4 Score=37.89 Aligned_cols=101 Identities=27% Similarity=0.356 Sum_probs=78.2
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhC---CCCCCeEEEe------cCcccCCCCchhhcccccCCceEEEEEeecceeEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
+-.-++.++|+++|-+--..|.+++. .-+...-|+. .|-.|+.++++.+|-+.+++++.-. ..+-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~---~k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYK---RKQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchh---hhcccce
Confidence 44457888999999998888877763 2255555553 2456789999999999999987443 2234567
Q ss_pred EEeecCceEEEEeeccchHHHHHHHhchhhCCC
Q 026932 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 189 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~ 189 (230)
++..+|..-++.++...+|.+|.--||.+.||-
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 888899999999999999999999999998873
No 213
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=84.73 E-value=1.9 Score=30.45 Aligned_cols=56 Identities=21% Similarity=0.479 Sum_probs=40.0
Q ss_pred eec-cchHHHHHHHhchhh----CCCC------CceEEEEC----------------C-eec---CCCCcccccCCCCCC
Q 026932 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES 217 (230)
Q Consensus 169 v~~-~~tV~~LK~~i~~~~----~i~~------~~~~l~~~----------------g-~~L---~d~~tL~~~~i~~g~ 217 (230)
++. +.||.+|++.+.+.. |++| +..++++. . ..| +++++|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 889999999888875 4432 33344421 1 466 788999999999999
Q ss_pred EEEEEEE
Q 026932 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~l~~~ 224 (230)
.|.+..+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987643
No 214
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=83.55 E-value=2.6 Score=27.33 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.7
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567888999999999999999999999999999864
No 215
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=83.45 E-value=4.7 Score=35.55 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=53.5
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCC------CCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i------~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
++|... .+...+.++.+..+.+|--.+-...+- .+..+.|. .+|..++.++||.+.||.+|+.+++.-+
T Consensus 5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 444433 345788888899999998888777643 24456776 7888999999999999999999998764
No 216
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=83.43 E-value=4.7 Score=27.45 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026932 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
++..+|++.-+.|+.+.|..+|+.++.+.++++.. ..|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999999876 55555
No 217
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=82.96 E-value=5.5 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=44.1
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~ 222 (230)
..++++.......+-+-.++++.+|+....++ -.|.-..+.+|-.+.-++.|+.+.+.
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 34677777777777778888899999888877 66777899999999999999998763
No 218
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=82.86 E-value=8.7 Score=23.61 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=37.9
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+++++..|+.+|.+.+. ++ ....+..+|.....+ .-.+.-+++||.|.+.--..||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 345566788999887663 33 235666888876532 2344558999999888766655
No 219
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=82.48 E-value=7.9 Score=23.85 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=39.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|+.+. +..+.||.+|... .+++++.-.+..||..+.. ....++-+.+++++.++...
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLES----LGLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEec
Confidence 455544 4677899999987 5677765555678866643 33455678899998887543
No 220
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=81.94 E-value=4 Score=26.29 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=34.8
Q ss_pred EEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
|...+|+...+.+.+.+|++++-+..|++.++.|+...|-
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 4557888999999999999999999999999988876554
No 221
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=3.8 Score=33.19 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=56.2
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L---~d~~tL~~~~i~~g~~i~l 221 (230)
-.+.++..+|+++..++++..|...++.-|.-..+...+.+.|. |-...+ +-.++|..+++-+-+++.+
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 35778888999999999999999999999999998877777665 444444 3358999999999888754
No 222
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=81.35 E-value=3.3 Score=37.14 Aligned_cols=65 Identities=35% Similarity=0.526 Sum_probs=43.9
Q ss_pred CceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEE--C--Ce-ecCCC-------------CcccccCCCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~--~--g~-~L~d~-------------~tL~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... +.| ++..-|-| + |+ .|.|. .||+.|+|++
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3568888989999999999998864 332 34555543 2 23 55443 3799999999
Q ss_pred CCEEEEEEEec
Q 026932 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++-+..++.
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999998863
No 223
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=81.20 E-value=6.5 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026932 9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
+|.... +.+..+.|..+|+.+|...++.+...-.+.|.
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 455555 99999999999999999999999777777775
No 224
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=81.07 E-value=3.9 Score=26.81 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.6
Q ss_pred EEE-ccCCcEEEEEecC--CCcHHHHHHHhhhhhCCC
Q 026932 4 FVK-TLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 4 ~v~-~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~ 37 (230)
+|| +.+|.+..+.+++ +.+..+|++.|...++++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 344 4578999999999 779999999999999999
No 225
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=80.94 E-value=11 Score=23.40 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+.+.+ .++.|+.+|=.. .++++..-.+.+++..+.... +..+ +.+++++.++-.
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTA 61 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEee
Confidence 5665554 578899888776 688888777788887654431 2345 899999988643
No 226
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=80.90 E-value=7 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.5
Q ss_pred ecCCcEEeeccCC--cCcHHHHHHHHHhHhCCCCCCeEEEe
Q 026932 83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 83 ~~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
+.+|....+.+++ +.+..+|++.+..+++++ .+.|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3567788888888 779999999999999999 555555
No 227
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=80.67 E-value=4.5 Score=28.72 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=37.5
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~ 211 (230)
.-+-|+.+.||.++...|.++.+++++...|..++..+..+.++++.
T Consensus 43 KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 43 HFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 33469999999999999999999998886666777666667777654
No 228
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=80.47 E-value=4.3 Score=28.73 Aligned_cols=56 Identities=21% Similarity=0.495 Sum_probs=38.0
Q ss_pred ccCC-cCcHHHHHHHHHhHh----CCCC------CCeEEEe----------------cC-ccc---CCCCchhhcccccC
Q 026932 92 EVES-SDTIDNVKAKIQDKE----GIPP------DQQRLIF----------------AG-KQL---EDGRTLADYNIQKE 140 (230)
Q Consensus 92 ~v~~-~~tV~~lK~~i~~~~----~i~~------~~q~L~~----------------~g-~~L---~d~~tL~~~~i~~~ 140 (230)
.|+. +.||.+|++.+.+.. |++| +..++.+ .. ..| +++.+|.++|+.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3676 889999998887764 3443 2233332 11 456 67889999999999
Q ss_pred CceEEEE
Q 026932 141 STLHLVL 147 (230)
Q Consensus 141 ~~i~l~~ 147 (230)
..|.+.-
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 8886653
No 229
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=80.42 E-value=8.1 Score=34.13 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=54.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCCceeEE---ecCcccccCccccccccccCCeEEEEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
||+|... .+..++-++.+.+|.|+--.|.+..|= +.....+. .+|..|+.+.||.+.|+.+|+.+++...
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 5666544 356889999999999999999888764 22222333 5689999999999999999999999864
No 230
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=80.25 E-value=4.2 Score=26.40 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=33.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
-|+.+.+.++.+..+|..+|.+++..+++.-.|.|..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4677999999999999999999999999999999853
No 231
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.64 E-value=2.2 Score=35.43 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=42.4
Q ss_pred cCCcCcHHHHHHHHHhHhCCCCCCeEEEec---Ccc-----cCCCCchhhcccccCCceEEE
Q 026932 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~-----L~d~~tL~~~~i~~~~~i~l~ 146 (230)
+.-.-||.+++..+..+.|+.+.+++|++- |+. ...+.+|..|.|++|+.+.+-
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 444559999999999999999999999873 332 344677888899999887543
No 232
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=79.42 E-value=5.3 Score=36.81 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=38.8
Q ss_pred ecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCccc
Q 026932 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 83 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
..+...+.+.++++.|+..++..|+..+|+|...|.|.|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34567788999999999999999999999999999999987554
No 233
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=79.36 E-value=12 Score=22.96 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|+. +++.++.|+.++-+.+ ++++ .-....||..... ....+.-+.+++++.++...
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l----~~~~-~~~v~vN~~~v~~-~~~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAY----GARP-PFAVAVNGDFVAR-TQHAARALAAGDRLDLVQPV 62 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhh----CCCC-CeEEEECCEEcCc-hhcccccCCCCCEEEEEeec
Confidence 4554 4567788999998875 4443 2344567766543 22445558889998887543
No 234
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=78.92 E-value=13 Score=23.09 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=39.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+| +|+.+.+ ..+.||.+|-.. .++++..-.+-.|+..+. ...+.++-+.+++.+.++..
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEE
Confidence 44444 5665554 667899998876 455554445557776664 33455666889999888654
No 235
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.52 E-value=8.6 Score=24.65 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=31.3
Q ss_pred CcEEeeccC-CcCcHHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 86 GKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 86 g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
|....+.++ .+.|..+|+.+|.++++.+.....+.|..
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 566778888 88999999999999999886666777754
No 236
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=78.35 E-value=4.1 Score=28.88 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.7
Q ss_pred eccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhc
Q 026932 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~ 135 (230)
+-|+.+.||+++...|.++.+++++..-|+.++..+..+.++++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 369999999999999999999999985555667566666676654
No 237
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=78.35 E-value=15 Score=23.54 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=45.9
Q ss_pred EeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC--eecCCCCcccccCCCCCCEEEEEEE
Q 026932 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g--~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..++|+...+.+.+..|+.++-.+++++.|+.++.+.++.-| +.++-++ +..+=.|..+.+-.|
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~q---D~~~L~~~El~vE~r 70 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQ---DSSVLAGQEVRLEKR 70 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCC---ccceeeccEEEEEEe
Confidence 357888999999999999999999999999999988887545 3443332 223334555555443
No 238
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.18 E-value=11 Score=24.13 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=32.7
Q ss_pred EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026932 3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
|.+.. +|..+.+.+. .+.|..+|+.+|.+.++++...-.+.|.
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 44433 3678888888 9999999999999999998644444453
No 239
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=78.08 E-value=10 Score=25.00 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=44.3
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|.|+| +|+.+. ++...||.+|-+. .++++....+-.||..+. .....++-+++|+.|.++-...
T Consensus 19 m~I~V---NG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~Vg 82 (84)
T PRK06083 19 ITISI---NDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIA 82 (84)
T ss_pred EEEEE---CCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEec
Confidence 44544 566544 4567788887665 478888888889998774 3345666789999998875433
No 240
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.94 E-value=3.6 Score=36.89 Aligned_cols=65 Identities=34% Similarity=0.477 Sum_probs=42.2
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHh--CC------CCCCeEEEec-C---c-ccCCC-------------Cchhhccccc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKE--GI------PPDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i------~~~~q~L~~~-g---~-~L~d~-------------~tL~~~~i~~ 139 (230)
...+.+.|-..|||.++|++|-+.. +. .++..-|-|. | + .|.|. .||++|++.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3558888999999999999997753 22 2445555432 2 2 34332 4899999999
Q ss_pred CCceEEEEEee
Q 026932 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99998887654
No 241
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=77.04 E-value=9.4 Score=25.36 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=30.1
Q ss_pred EEeec-cchHHHHHHHhch-hhCCCC-C---ceEEEECCee----cCCCCcccccCCCCCCEEEEE
Q 026932 167 LEVES-SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 167 ~~v~~-~~tV~~LK~~i~~-~~~i~~-~---~~~l~~~g~~----L~d~~tL~~~~i~~g~~i~l~ 222 (230)
+.++. ..|+.+|-+.|.+ +.|... + .-.++|.... -...++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 34443 5699999888766 556432 2 2344444432 234689999999999988753
No 242
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.30 E-value=13 Score=31.22 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=45.3
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+++++..|+.+|-+. .+++++...+..||..+.- ....++-+++||.|.++--..||.
T Consensus 10 ~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 10 RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCC
Confidence 455667788887654 4788888888899998863 346677899999999988777774
No 243
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=76.03 E-value=7.6 Score=25.79 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
++.|..++|....+.+..+++-.++-+.+..+.|+|.+...-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 567778899999999999999999999999999999876653
No 244
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=75.80 E-value=18 Score=23.17 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=38.3
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
|-.++|.+-.+.+.|+.||.|+=.+.-+..|++++.=.++..|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4467899999999999999999999999999999888888655
No 245
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.60 E-value=11 Score=30.68 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=55.8
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccC-C--CCchhhcccccCCceEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE-D--GRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~-d--~~tL~~~~i~~~~~i~l 145 (230)
.-.+.|+..+|+++...+++..|..+++.-+.-..+...+...|. |-.+.+. | .++|...++.+.+++.+
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 456788889999999999999999999999999999887777776 3334442 2 57899999988877643
No 246
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=75.50 E-value=16 Score=22.89 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCcEEeeccCCc-CcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 85 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 85 ~g~~~~~~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+|+.+ +++.. .||.+|-+ ..++++....+-.++..+..+ ...++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 56655 44444 57887765 357888888888999877543 3455668899999887543
No 247
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=75.23 E-value=9.6 Score=24.56 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.5
Q ss_pred EEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.|...+|+...+.+.++.|+.++-+..+++.++.++.--|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 35567899999999999999999999999999988876554
No 248
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=74.92 E-value=17 Score=23.18 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=48.7
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
.+.|.......-+-+-.++++.+|+....++ -.|.-..+.++-..+-++.|+.+.+.-|-+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 3566667767777777888899998877776 677778999999999999999999876643
No 249
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=74.83 E-value=20 Score=23.21 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=35.4
Q ss_pred EEeec-cchHHHHHHHhchhhC-----CCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~-~~tV~~LK~~i~~~~~-----i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+++++ ..||.+|++.+.++.. ......+...|+..-.+ +.-+++||.|-+.-...||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34433 4799999999998862 11223344455543222 3458999999777666655
No 250
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=74.28 E-value=16 Score=23.97 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=40.1
Q ss_pred CceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+..+...++...||.++- +..|+|....-++ .||+..+- +|-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 456778888889987765 3459999988776 78887664 37788999998753
No 251
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=74.10 E-value=20 Score=23.01 Aligned_cols=65 Identities=12% Similarity=0.280 Sum_probs=40.1
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhC-CCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEE
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 81 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v 81 (230)
.|-.-..|+.|+.+|+.+|.+++. +-|....+.. ..|+|.. .|.+.+...+.=+......+++.+
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~---~cDLD~d~~V~DVf~~~~~vrvi~ 69 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSD---GCDLDPDFLVKDVFNSNNVVRVIL 69 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCC---CCCCCcccEeeeeeccCCEEEEEe
Confidence 444557899999999999999976 3454444433 3455542 466666655555544444444444
No 252
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=73.99 E-value=12 Score=24.72 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=32.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 40 (230)
|.|-..+|.+..+.|++.+|++++=+.+..+.+.....
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 55667899999999999999999999999998877644
No 253
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=73.45 E-value=3.7 Score=27.75 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=34.7
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceE-------------EEECCeecCCCCcc--cccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQR-------------LIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~-------------l~~~g~~L~d~~tL--~~~~i~~g~~i~l~~~~~~g 228 (230)
+..+...||.+|-+.+++.+ |..+-. ++.||+. -..+ .++-+++||+|.+.--..||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~d---i~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTD---WELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCcc---ccccCCcccCCCCcCEEEEECCCCCC
Confidence 33435679999999998876 222222 2233321 1223 35679999999887755554
No 254
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=73.19 E-value=8.5 Score=25.56 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.2
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCc
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~ 192 (230)
.+.|..++|+...+++..+++..++-+.++.+.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 455666789999999999999999999999999998764
No 255
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=72.86 E-value=14 Score=25.19 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.5
Q ss_pred EecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe
Q 026932 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
+-.+|++..+.|+.+.|..+|+.++++..+++.. +.|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4568889999999999999999999999998876 66655
No 256
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=72.54 E-value=17 Score=23.82 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCcccccCccccccccccCCeEEEEE
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+..+.....++.||.++=+. .|||...-.+. .||+..+-+ |-+.+|+++.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 56788899999999988666 99998877666 588777654 5566788877754
No 257
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=71.23 E-value=15 Score=31.55 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=50.5
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhh--CCCCCceEEEEC----Ce--ecCCCCcccccCCCCCCEEEEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GK--QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~--~i~~~~~~l~~~----g~--~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.+++..| ...+++.++++.+-|-.++-..+ +..|+++-++-+ |. -+..++|+.++|+.+|+.+++.+
T Consensus 3 ~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34454444 56789999999998877777654 467778888732 22 14567899999999999999987
No 258
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=71.20 E-value=6.6 Score=26.62 Aligned_cols=36 Identities=36% Similarity=0.719 Sum_probs=25.9
Q ss_pred EEEECCeecCCCCccccc-CCCCCCEEEEEEEecCCC
Q 026932 194 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 194 ~l~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~~g~ 229 (230)
.|-|.|+.|..+++|++| |-.+-+.|.+-+...|+|
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCC
Confidence 466899999999999999 334555566666566654
No 259
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=70.59 E-value=24 Score=22.26 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=40.4
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+++++...|+++|-+. .+++++......+|..+..+ ...+.-+++|+.|.++--.
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v 65 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVV 65 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEee
Confidence 4566666899997654 68889889999999887643 3455667888888776433
No 260
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=69.56 E-value=22 Score=24.68 Aligned_cols=37 Identities=5% Similarity=0.185 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~ 48 (230)
.-.+.|++.+|++-+-..+....+++..+|.+.|-+.
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~ 82 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN 82 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC
Confidence 4467899999999999999999999999999887543
No 261
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=69.34 E-value=20 Score=23.69 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=42.6
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCe-EEE-ec-----CcccCCCCchhhc
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~~-----g~~L~d~~tL~~~ 135 (230)
-|.|...+|....+.|++..|++++-+.+..+.....+.- .|. +. .+.++|...+-++
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 4667778999999999999999999999999998665543 333 21 2456776655443
No 262
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=68.96 E-value=9.1 Score=35.96 Aligned_cols=63 Identities=17% Similarity=0.369 Sum_probs=48.6
Q ss_pred cCceEEEEeec-cchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCC--CCCCEEEEEE
Q 026932 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLVL 223 (230)
Q Consensus 161 ~~~~~~~~v~~-~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i--~~g~~i~l~~ 223 (230)
.|+...+..+. ..|+++||.+|.+++|+....+.|. -+|..|..++.|..|.- .+..-|+++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEee
Confidence 46777777775 5699999999999999999999887 56677888888888863 3444555553
No 263
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=68.70 E-value=6.7 Score=25.35 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=22.7
Q ss_pred HHHhHhCCCCCCeEEEe---cCcccCCCCchhhccccc
Q 026932 105 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 105 ~i~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~~i~~ 139 (230)
.|+++..+.|....|.- .+.+|+-+++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 58899999999998884 457888899999999985
No 264
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=22 Score=33.04 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe----cCccc--CCCCchhhcccccCCceEEEEE--ee-cceeEEEE
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVLR--LR-GGMQIFVK 158 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~----~g~~L--~d~~tL~~~~i~~~~~i~l~~~--~~-~~~~i~v~ 158 (230)
.+.+.|+...+++.+|+.|++..+++.+.+++.. +|..+ .++.+|.. ..++.+|.+-+- +. +...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 5678999999999999999999999999999873 23333 45667775 456666655432 21 22333333
Q ss_pred ee----cC-c----eEEEEeeccchHHHHHHHhchhh
Q 026932 159 TL----TG-K----TITLEVESSDTIDNVKAKIQDKE 186 (230)
Q Consensus 159 ~~----~~-~----~~~~~v~~~~tV~~LK~~i~~~~ 186 (230)
.. +. . .+..-+..++|+++.|..+-.+.
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L 992 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRML 992 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHH
Confidence 22 11 1 13344567899999887766553
No 265
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=66.65 E-value=10 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCcc
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~~ 49 (230)
.+.+.+.|++.+|=.|+|+.|+..+|+++..-. +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 578999999999999999999999999997644 3355543
No 266
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=66.05 E-value=7.9 Score=26.14 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=33.0
Q ss_pred eccCCcCcHHHHHHHHHhHhCCCCCCeEEE-------------ecCcccCCCCch--hhcccccCCceEEEEEeec
Q 026932 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------------FAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-------------~~g~~L~d~~tL--~~~~i~~~~~i~l~~~~~~ 151 (230)
++++...||.++-+.+.+.+. ..+.+++ .||... ..+ .++-+++|+.|.++....|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcCEEEEECCCCC
Confidence 444467799999999988772 2233333 233221 112 2466888998877654433
No 267
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=65.76 E-value=31 Score=23.15 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCcEEeeccC-----CcCcHHHHHHHHHhHhCCCC-CCeEEEecC
Q 026932 85 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 123 (230)
Q Consensus 85 ~g~~~~~~v~-----~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g 123 (230)
+|....+.++ ++.+..+|+.+|.+.+.+++ ....|.|..
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 4545555555 46899999999999999987 667777864
No 268
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.35 E-value=12 Score=24.21 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+++.|++++|=.++|+.|+..+|+.+..-+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 368999999999999999999999999886544
No 269
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=64.78 E-value=25 Score=22.89 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhHhCCCCCCeEEEe--cCcccCCCCchhh
Q 026932 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++....+|.. .|.+.+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 5799999999999999987787775 6888887754443
No 270
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=64.77 E-value=24 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=27.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
+...++.|++++|..++=..+.+++++...
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 567889999999999999999999999753
No 271
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=64.68 E-value=9.4 Score=25.58 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=32.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCcc
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~~ 49 (230)
+.++++|++++|=.|+|..|+..+|+++..-+ +.+.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 67899999999999999999999999986644 4466643
No 272
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=64.45 E-value=25 Score=24.41 Aligned_cols=38 Identities=5% Similarity=0.198 Sum_probs=33.2
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCccc
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
-.+.|++++|++.+-..+.+..+++++++..+|-+...
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 46788999999999999999999999999988866544
No 273
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=64.43 E-value=35 Score=21.83 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=47.0
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.|+..+....+-+--++++.+|+....++ -.|.-++...+-..+-++.|+.+.+.-|.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 3578888888888888899999998877666 45777888888888878888888776543
No 274
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=63.68 E-value=12 Score=25.41 Aligned_cols=31 Identities=39% Similarity=0.803 Sum_probs=23.7
Q ss_pred EEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 118 ~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.|.|.|++|..+.+|++| +..+..-.+++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEe
Confidence 577999999999999999 6666655555443
No 275
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.61 E-value=23 Score=23.03 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=26.3
Q ss_pred chHHHHHHHhchhhCCCCCceEEE--ECCeecCCCC
Q 026932 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 206 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d~~ 206 (230)
.+.++|+.+.++.++++.+...|+ -+|.+.+|+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCH
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHH
Confidence 589999999999999997777776 3677777653
No 276
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=63.56 E-value=4.1 Score=26.32 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=21.7
Q ss_pred HhchhhCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 026932 181 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 181 ~i~~~~~i~~~~~~l~~---~g~~L~d~~tL~~~~i~~ 215 (230)
.||++..+.|+...|.. .+.+|+-+++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47888888888888873 447899999999999964
No 277
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.23 E-value=8.1 Score=33.70 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=49.8
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.++++...|=.++...|.++.|++.+..+.+.+|+.+.-.+||.+-|++.+....+.+
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 4556667788899999999999999999999999999999999999998877654443
No 278
>PRK07440 hypothetical protein; Provisional
Probab=63.16 E-value=35 Score=21.48 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=39.9
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.+|+. .++..+.||.+|-.. .++++..-..-+||..+.. ..+.++-+.+++++.++-
T Consensus 9 vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 35665 556778899988765 6777766666678866543 345667788899988764
No 279
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=62.86 E-value=26 Score=22.88 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.4
Q ss_pred eEEEEeeccchHHHHHHHhchhhCC--CCCceEEE
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 196 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i--~~~~~~l~ 196 (230)
...+.++.++|+.++-+++.+++++ .++.+.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 6789999999999999999999998 45567773
No 280
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=62.31 E-value=38 Score=21.58 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=43.1
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhcccccCCceEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.+.|++++....+-+-.++++.+|+..-.++. .|.-.+..+|-.+.-++.|+.+.+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 46788888888888888999999998888775 577788899988888888888765
No 281
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=62.18 E-value=12 Score=35.21 Aligned_cols=62 Identities=18% Similarity=0.385 Sum_probs=46.5
Q ss_pred CCcEEeeccCC-cCcHHHHHHHHHhHhCCCCCCeEEEec-CcccCCCCchhhccc--ccCCceEEE
Q 026932 85 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~tL~~~~i--~~~~~i~l~ 146 (230)
.|+...++.+. ..|+++||.+|++++|+....+.+.-+ |..+..++.+..|.- .+.+.|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 46777777775 458999999999999999999988855 566777888888762 233345444
No 282
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=61.99 E-value=39 Score=21.98 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=24.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
..++.|++++|+.++=..+-.++|++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 778999999999999999999999943
No 283
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=61.99 E-value=12 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.4
Q ss_pred ceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeec
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 202 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L 202 (230)
..+.+.|++..|-.++|+.++..+|+++...+-+ +.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 5799999999999999999999999999887665 776543
No 284
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=61.97 E-value=30 Score=29.84 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=52.5
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEec----Ccc--cCCCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~----g~~--L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|.+.++...|. ..+++.++++.+.|-.++-.... ..++...+.-+ |.. +..++|+.+.|+..|..+++..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34667777775 57999999999998888877654 56777777743 221 3456799999999999998876
No 285
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=61.96 E-value=12 Score=26.27 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=41.0
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCc-eEEEECCeecCCCCccccc----CCCCCCEEEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY----NIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 224 (230)
-.+-|+.+.||+++...|.++..+.++. ..|+.++.....+.++++. +-. +.-+++...
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGfLyl~Ys 106 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDE-DGFLYMTYS 106 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCC-CCEEEEEEe
Confidence 3456999999999999999999987776 5566666544666777554 333 445555543
No 286
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=61.95 E-value=33 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCcEEEEEec-----CCCcHHHHHHHhhhhhCCCC-CceeEEec
Q 026932 9 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~~~v~-----~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
+|...-+.++ ++.+..+|+++|.+.+++++ ..-.|.|.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 5666666666 47999999999999999997 33444554
No 287
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.76 E-value=50 Score=27.81 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+|+. .++..+.||.+|-.. .+++++.-.+.+||+.+. ...+.++-+.+++++.++--..
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEec
Confidence 5664 555678899988776 688888777778997774 4456677899999999986554
No 288
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=61.55 E-value=16 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=34.9
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCc-eEEEECCeecCCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~g~~L~d~~tL~~~ 211 (230)
..+-++.+.||.++...|.++..++++. ..|+.++.....+.++++.
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred cEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 3445788999999999999999987764 5666777666777887654
No 289
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.45 E-value=16 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+++.|++.++=.++|+.|+..+|+.+..-+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~Vn 53 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVN 53 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 468999999999999999999999999986544
No 290
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.10 E-value=33 Score=22.33 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.7
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCC--CCCeEEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~q~L~ 120 (230)
+....+.|+.++|..++-..+.+++++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999976 5566665
No 291
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=60.76 E-value=44 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.1
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC-CCeEEE
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~ 120 (230)
|.|--.++...++.++.++||+++-..+.++..++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344445666678999999999999999999998766 444444
No 292
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=59.32 E-value=27 Score=24.10 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=37.1
Q ss_pred eccCCcCcHHHHHHHHHhHhCCCCCC-eEEEecCcccCCCCchhhccc---ccCCceEEE
Q 026932 91 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLV 146 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~~i---~~~~~i~l~ 146 (230)
+-|+.+.||+++...|.++..++++. .-|+.++.....+.++++.-= .++..+++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~ 96 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMT 96 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEE
Confidence 44788999999999999999988764 344467766667778766431 234455544
No 293
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=58.85 E-value=54 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=33.4
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCcccCCCCchhhc
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~ 135 (230)
.+-|+.+.||+++...|.++..++++.--.+ .++.....+.++++.
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 3458999999999999999999888764444 455444556666543
No 294
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=58.66 E-value=58 Score=22.48 Aligned_cols=64 Identities=28% Similarity=0.300 Sum_probs=44.9
Q ss_pred CceEEEEeeccchHHHHHHHhchhh----C--CCCC-ceEEEECCe--ecCCCCccccc-----CCCCCCEEEEEEEe
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADY-----NIQKESTLHLVLRL 225 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~----~--i~~~-~~~l~~~g~--~L~d~~tL~~~-----~i~~g~~i~l~~~~ 225 (230)
...+.+.+++++|+.++.+.+-.+. + -+++ ++.|-..|+ -|..+.+|.+| .++.|..++|++..
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 4579999999999999977666651 1 2333 677766664 44567778777 35788888888764
No 295
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=57.62 E-value=50 Score=21.42 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=26.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+...++.|+.++|..++-..+.+++++..
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~ 40 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD 40 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC
Confidence 55678999999999999999999999983
No 296
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=56.33 E-value=64 Score=22.26 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=43.9
Q ss_pred eeeEEEecC-CcEEeeccCCcCcHHHHHHHHHhHh----C--CCCC-CeEEEecCcc--cCCCCchhhcc-----cccCC
Q 026932 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKES 141 (230)
Q Consensus 77 ~~v~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~----~--i~~~-~q~L~~~g~~--L~d~~tL~~~~-----i~~~~ 141 (230)
+.|.+...+ ...+.+.+++++|+.++.+.+-.+. + -+++ ...|.-.|+. |..+.+|.+|. +..+.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 334444333 4668999999999999988776651 1 2233 5666655532 44455555543 56677
Q ss_pred ceEEEEE
Q 026932 142 TLHLVLR 148 (230)
Q Consensus 142 ~i~l~~~ 148 (230)
.+++++.
T Consensus 98 ~~~L~L~ 104 (108)
T smart00144 98 EPHLVLM 104 (108)
T ss_pred CceEEEE
Confidence 7777654
No 297
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=55.71 E-value=17 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeE
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
.+.+.+.|++++|=.++|..|+..+|+-+..-.-
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNT 54 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNT 54 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 4689999999999999999999999998876443
No 298
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=55.57 E-value=29 Score=22.92 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=38.4
Q ss_pred EEecCCCcHHHHHHHhhhhhCCC-------CCceeEEecCc-cc------ccCccccccccccCCeEEEE
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~-------~~~q~l~~~g~-~l------~d~~~l~~~~i~~~~~i~l~ 70 (230)
+++++++|+.++-..+.....+. .+...|++.+. .| .=+++|.+. +.+|..+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 68999999999999998884333 34455666552 12 225888888 8888887764
No 299
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=54.24 E-value=22 Score=23.33 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=33.7
Q ss_pred ceEEEEeeccchHHHHHHHhchhhCC-CCCceEEE--ECC--eecCCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAG--KQLEDG 205 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~i-~~~~~~l~--~~g--~~L~d~ 205 (230)
...++.|.|..|.+++-.+++.++.+ .|+.+.|+ .+| ..|.|+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 35789999999999999999999987 67777665 455 356554
No 300
>PRK01777 hypothetical protein; Validated
Probab=53.92 E-value=55 Score=22.12 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=42.2
Q ss_pred CEEEEEcc-C--CcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-------eeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~-~--g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-------q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|.|-.. . .....+++.++.||.++=.. .||+... -.+..+|+.... +.-+.+|+++.+.
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 45666543 2 23567999999999998777 5777653 244567766654 3456778898886
Q ss_pred EE
Q 026932 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
..
T Consensus 75 rP 76 (95)
T PRK01777 75 RP 76 (95)
T ss_pred cC
Confidence 43
No 301
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=53.82 E-value=23 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=34.0
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCcc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~ 125 (230)
...+.+.|+...|=.++|+.++..+++++...+-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 46799999999999999999999999999887654 55544
No 302
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=53.19 E-value=29 Score=22.29 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=31.6
Q ss_pred chHHHHHHHhchhhCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEE
Q 026932 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLH 220 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d~~tL~~~~i~~g~~i~ 220 (230)
.+.++|+.+.++.++++....+++ -+|.+.+|+.=+.. ++++..+.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~ 66 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELM 66 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEE
Confidence 479999999999999986555554 58888877643222 34444443
No 303
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.17 E-value=9.8 Score=33.23 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=47.8
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
++.+...|-.+|...|++++|++....+.+.+|+.+.-.+||.+-|++.+....+..
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 344445678899999999999999988999999999999999999998877665443
No 304
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=52.63 E-value=55 Score=22.24 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=35.2
Q ss_pred EEEeecCceEEEEeeccchHHHHHHHhchhhCCCC-CceEEE-ECC---eecCC
Q 026932 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI-FAG---KQLED 204 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~~~l~-~~g---~~L~d 204 (230)
.|--.++.-.++.+..++||+++-..+.++..++. .+++|. ..+ +.|.+
T Consensus 6 RIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p 59 (97)
T cd01775 6 RVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRP 59 (97)
T ss_pred EEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCC
Confidence 33334555578999999999999999999988765 566665 333 45643
No 305
>PRK08453 fliD flagellar capping protein; Validated
Probab=52.53 E-value=57 Score=30.45 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=49.2
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhC--C--------CCCceeEEecCcccccC------ccccccccccCCeEEEEE
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 71 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i--------~~~~q~l~~~g~~l~d~------~~l~~~~i~~~~~i~l~~ 71 (230)
.+|++++++|..+.|+.+|+..|-+..+ | ...-.+|.+.+...-.+ .+|++..+..+.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 3699999999999999999999995331 1 11123445544333322 233333333333111111
Q ss_pred EecCCeeeEEEecCCcEEeecc
Q 026932 72 RLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 72 ~~~~~~~v~v~~~~g~~~~~~v 93 (230)
.-.+.+.|.++..+|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2234578888888887665544
No 306
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.34 E-value=31 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=33.3
Q ss_pred ecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g 199 (230)
.+|.+..+.++..-|-+.|+++++..+.+|+...-+.|-.
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiD 46 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYID 46 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEc
Confidence 4566778888888899999999999999998877776633
No 307
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.72 E-value=25 Score=22.81 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.6
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.|.|+...|=.++|+.++..+++.+...+-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5789999999999999999999999998877654
No 308
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=51.69 E-value=64 Score=21.07 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.7
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCC--CCeEEE
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 120 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~ 120 (230)
++....+.|..++|..++-..+.++++++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 366678999999999999999999999864 455665
No 309
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=50.99 E-value=77 Score=21.60 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=41.9
Q ss_pred eeeEEEec-CCcEEeeccCCcCcHHHHHHHHHhHh--CCCC----CCeEEEecCcc--cCCCCchhhcc-----cccCCc
Q 026932 77 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPP----DQQRLIFAGKQ--LEDGRTLADYN-----IQKEST 142 (230)
Q Consensus 77 ~~v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~~----~~q~L~~~g~~--L~d~~tL~~~~-----i~~~~~ 142 (230)
+.|.|... .+..+.+.++.++|+.++-+.+-.+. +... +...|.-.|.. |..+.+|.+|. +..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 44555555 56778999999999999988776662 2221 15666666643 56677777775 455555
Q ss_pred eEEEE
Q 026932 143 LHLVL 147 (230)
Q Consensus 143 i~l~~ 147 (230)
+++.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55554
No 310
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=50.76 E-value=22 Score=23.61 Aligned_cols=61 Identities=5% Similarity=0.097 Sum_probs=40.9
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCCc-eEEEECCeec-CCCCcccccC--CCCCCEEEEEEE
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLADYN--IQKESTLHLVLR 224 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~g~~L-~d~~tL~~~~--i~~g~~i~l~~~ 224 (230)
.-.+.++++.|++++...|.++.++.+++ ..|+.+...+ ..+.++++.- -.++..+++...
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 34566899999999999999999987765 5555665423 3455654431 145666666553
No 311
>CHL00030 rpl23 ribosomal protein L23
Probab=50.31 E-value=27 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
..+.+.+.|++++|=.++|+.|+..+|+.+..-.
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VN 51 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVN 51 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4578999999999999999999999999886544
No 312
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=50.00 E-value=41 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=21.7
Q ss_pred EEEEe-cCCCcHHHHHHHhhhhhCC--CCCceeEEecC
Q 026932 13 ITLEV-ESSDTIDNVKAKIQDKEGI--PPDQQRLIFAG 47 (230)
Q Consensus 13 ~~~~v-~~~~tv~~lK~~i~~~~gi--~~~~q~l~~~g 47 (230)
.++.+ +++.+|.|||+.|-...+. ..+.+..+++.
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 34555 3467999999999666554 44444444543
No 313
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=49.93 E-value=74 Score=21.07 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=41.8
Q ss_pred EEEEeeccchHHHHHHHhchhh-C--CCC--C-ceEEEECC--eecCCCCcccccCCCCCCEEEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-~--i~~--~-~~~l~~~g--~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
.-+.++..+|+.++=++++-.. | +++ . ..++.++| ..+..+.++++.||.+=+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4577888999999988887764 4 333 2 35666888 8999999999999999999988763
No 314
>KOG4261 consensus Talin [Cytoskeleton]
Probab=49.65 E-value=51 Score=31.09 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=75.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC---CCceeEEec------CcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~---~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
+-..++...|+.+|.|-=..|.+++.-. +..-.|+.. |--|+...+|..|=+..++++...-. .-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccce
Confidence 4567899999999999777776665311 344444432 34478889999998888888765432 23467
Q ss_pred EEecCCcEEeeccCCcCcHHHHHHHHHhHhCCC
Q 026932 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
++.++|..-++.++.+.+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 788889888999999999999999999988864
No 315
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=47.85 E-value=40 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=26.4
Q ss_pred chHHHHHHHhchhhCCCCCceEEE--ECCeecCCCC
Q 026932 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 206 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d~~ 206 (230)
.+.++|+.+.++.++++....+++ -+|.+.+|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 379999999999999965555554 6888887664
No 316
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=47.80 E-value=51 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHhHhCCCCCCeEEE--ecCcccCCCCchhh
Q 026932 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~tL~~ 134 (230)
.|..+|+.+.++.++++....+|. -.|.+++|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 479999999999999996666665 47889888765554
No 317
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=47.61 E-value=25 Score=22.88 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhh
Q 026932 13 ITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
.+++++.++|+.++|+.+-+..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4789999999999999765553
No 318
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=47.22 E-value=64 Score=28.17 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=60.4
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccCC---CCchhhcccccCCceEEEEEe
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+..++.|+..+|..+.=.++.++-...++..+....++....+.|- |-.++..+ .++|.+..+.+...+.|+-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567888889999998899999999999999998888888777775 66666643 578999999998877665444
Q ss_pred e
Q 026932 150 R 150 (230)
Q Consensus 150 ~ 150 (230)
.
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 3
No 319
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=46.32 E-value=55 Score=27.61 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=47.6
Q ss_pred EEEEeeccchHHHHHHHhchhh--------------C-CCCCceEEEECCeecCCCCcccccC---CCCCCEEEEEEEec
Q 026932 165 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 226 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~--------------~-i~~~~~~l~~~g~~L~d~~tL~~~~---i~~g~~i~l~~~~~ 226 (230)
..+..+.-..|..++..|.+++ . .|.+...|+++|.+|+.+.||+... =+.|..|.|.+|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 4556666678888888888887 2 3455678999999999999987664 36788888888865
Q ss_pred C
Q 026932 227 G 227 (230)
Q Consensus 227 ~ 227 (230)
+
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 4
No 320
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.67 E-value=84 Score=21.70 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.9
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCC
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~ 190 (230)
+++-..+|++..++|....+-.++++++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 344557899999999999999999999999999866
No 321
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.58 E-value=36 Score=22.47 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.1
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
...+.|.|+...+=.++|+.++..+++.+...+-.
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 35799999999999999999999999998887654
No 322
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=44.74 E-value=58 Score=21.44 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=32.6
Q ss_pred EEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026932 4 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 4 ~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
+||. .+|..+.+.++++.|..+|.+++.+.+..+. .|-+.
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~-~q~ft 42 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN-DQPFT 42 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC-CCcEE
Confidence 3443 4799999999999999999999999999877 34443
No 323
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=44.63 E-value=24 Score=23.95 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=38.3
Q ss_pred EEeecceeEEEEeecCceEEEEee---ccchHHHHHHHhchhhC------------CCCCceEEEECC--eecCCCCccc
Q 026932 147 LRLRGGMQIFVKTLTGKTITLEVE---SSDTIDNVKAKIQDKEG------------IPPDQQRLIFAG--KQLEDGRTLA 209 (230)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~~~v~---~~~tV~~LK~~i~~~~~------------i~~~~~~l~~~g--~~L~d~~tL~ 209 (230)
+...||..+... +.+.+.++++ ...|+.+|-..+++..- +.|.-..|+ |+ ++|... .
T Consensus 4 vEF~GGlE~Lf~--~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLI-Nd~DwEl~g~---~ 77 (96)
T PF09138_consen 4 VEFSGGLELLFG--NQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLI-NDADWELLGE---E 77 (96)
T ss_dssp EEEETTCGGGTT--T-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEE-TTCEHHHHTC---C
T ss_pred EEEcCcHHHHhC--CceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEE-cCccceeecC---c
Confidence 344455443222 2345677776 67799999888888642 112212221 11 122211 3
Q ss_pred ccCCCCCCEEEEEEEecCC
Q 026932 210 DYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 210 ~~~i~~g~~i~l~~~~~~g 228 (230)
+|-+++||+|.+.-.+-||
T Consensus 78 ~y~l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 78 DYVLKDGDNITFISTLHGG 96 (96)
T ss_dssp CSB--TTEEEEEEETTT--
T ss_pred ceEcCCCCEEEEEccCCCC
Confidence 6899999999887766665
No 324
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=44.41 E-value=52 Score=21.53 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=34.5
Q ss_pred eccchHHHHHHHhchhhC---CCCCceE-E-EECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 170 ESSDTIDNVKAKIQDKEG---IPPDQQR-L-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 170 ~~~~tV~~LK~~i~~~~~---i~~~~~~-l-~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..-.|+.+|.+++.++.. ....... + ..+...+.+. ++-+++||+|-+.-...||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 346799999999877653 2122112 2 2333444433 4568999999888777776
No 325
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=44.24 E-value=92 Score=20.62 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=39.5
Q ss_pred eeccCCcCcHHHHHHHHHhHh-C--CCC---CCeEEEecC--cccCCCCchhhcccccCCceEEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i~~---~~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
-+.|+..+|+.++=++++... | +++ ...++.++| +.+..+.++++.||.+-+.|.+..
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 467888999999999888764 3 333 245666888 888999999999999988777653
No 326
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=43.63 E-value=10 Score=32.14 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.8
Q ss_pred ecCCcEEeeccC-CcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCch
Q 026932 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 83 ~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL 132 (230)
..+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456777777777 67789999999999999999999999999999887443
No 327
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=42.93 E-value=38 Score=22.88 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=42.6
Q ss_pred CceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCee---------cCCCCcccccCCCCCCEEEE
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ---------LEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~---------L~d~~tL~~~~i~~g~~i~l 221 (230)
...+.+.|++..|-.++|+.+++.+|+.+.....+ ..|.. +..+..-...-+..|+.|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46799999999999999999999999988777553 44421 33344444445566666544
No 328
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=42.68 E-value=96 Score=20.31 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=35.8
Q ss_pred cCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCc-----ccCCCCchhhc
Q 026932 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----~L~d~~tL~~~ 135 (230)
.+|..-.+.++..-|-+.|+++|...+.+|+...-+.|-.. .|.++.-|.++
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34544455566666899999999999999998888887432 24444445444
No 329
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=42.35 E-value=40 Score=25.17 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecC
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g 47 (230)
..+.+.+.|++++|=.++|..|+..+|+.+..-.-. ..|
T Consensus 21 e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 21 SKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 357899999999999999999999999998665443 444
No 330
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=42.15 E-value=1e+02 Score=20.43 Aligned_cols=45 Identities=2% Similarity=0.216 Sum_probs=31.3
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCc-ccCCCCchhh
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGK-QLEDGRTLAD 134 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~-~L~d~~tL~~ 134 (230)
.+-|+.+.|++++...|.++.++++++-...| +.. ....+.++.+
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~ 65 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGN 65 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHH
Confidence 45689999999999999999998877644444 443 2234455543
No 331
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=42 Score=28.40 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHh-CCCCCCeEEEecC---cccC--CCCchhhcccccCCc
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 142 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~~g---~~L~--d~~tL~~~~i~~~~~ 142 (230)
.|.|+..+|++....+-.+++|..|-.-+.... |.+-..+.|+.+- +.|. .+.|++++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 588999999998888888899988877666654 5677788888664 5553 477999999998764
No 332
>CHL00030 rpl23 ribosomal protein L23
Probab=41.51 E-value=43 Score=22.59 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=30.4
Q ss_pred CceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
...+.+.|+.+.|-.++|+.|+..+++.+....-+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 36899999999999999999999999887776554
No 333
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=41.23 E-value=37 Score=22.26 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=33.6
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCC---CceeEE-ecCccccc
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLED 52 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~l~-~~g~~l~d 52 (230)
.+|+.+.+.++.++++--+-++...+.|.++ ..+++. ++|..+.-
T Consensus 7 Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~~ 55 (91)
T cd05484 7 VNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLSV 55 (91)
T ss_pred ECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEeeE
Confidence 4689999999999999999999988888663 334444 55654443
No 334
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=1.1e+02 Score=20.54 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=45.7
Q ss_pred EEEEEeecceeEEEEeecCceEEEEee-ccchHHHHHHHhchhhCCCCCceEEEECCe------ec-CC-CCcc---ccc
Q 026932 144 HLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK------QL-ED-GRTL---ADY 211 (230)
Q Consensus 144 ~l~~~~~~~~~i~v~~~~~~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~------~L-~d-~~tL---~~~ 211 (230)
.+-++..+|..+...........+++. ...||.+|-..+..++--.++. .++.+|. +| .| +..| .+|
T Consensus 6 ~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy 84 (101)
T KOG4146|consen 6 EVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDY 84 (101)
T ss_pred eEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhccccc
Confidence 344555566555443222222333322 4568999887777754222222 3344442 12 11 1122 589
Q ss_pred CCCCCCEEEEEEEecCC
Q 026932 212 NIQKESTLHLVLRLRGG 228 (230)
Q Consensus 212 ~i~~g~~i~l~~~~~~g 228 (230)
.+++|+.|.+.-.+-||
T Consensus 85 ~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 85 PLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccCCEEEEEEeccCC
Confidence 99999999888777765
No 335
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.32 E-value=56 Score=21.24 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=32.0
Q ss_pred chHHHHHHHhchhhCCCCCceEE--EECCeecCCCCcccccCCCCCCEEEE
Q 026932 173 DTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~~~~l--~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
.+.++|+.+.++.++++....+| .-+|.+.+++.=++. +.++..+.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 37999999999999997654444 577888876642222 455555544
No 336
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=39.31 E-value=1.2e+02 Score=20.57 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=42.5
Q ss_pred EEEEee-cCceEEEEeeccchHHHHHHHhchhh--CC-C---CCceEEEECCe--ecCCCCcccccC-----CCCCCEEE
Q 026932 155 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GI-P---PDQQRLIFAGK--QLEDGRTLADYN-----IQKESTLH 220 (230)
Q Consensus 155 i~v~~~-~~~~~~~~v~~~~tV~~LK~~i~~~~--~i-~---~~~~~l~~~g~--~L~d~~tL~~~~-----i~~g~~i~ 220 (230)
+.+... ....+++.++.+.|+.+|-..+-.+. +. + .+++.|--.|+ -|..+.+|.+|. +..+-.+.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~~ 98 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDPH 98 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--EE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCcE
Confidence 444444 45679999999999999977766662 22 1 12577766663 556778888883 46666777
Q ss_pred EEEE
Q 026932 221 LVLR 224 (230)
Q Consensus 221 l~~~ 224 (230)
+.+.
T Consensus 99 L~Lv 102 (106)
T PF00794_consen 99 LVLV 102 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 337
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=38.57 E-value=34 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHhhhhhC
Q 026932 13 ITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
..++++.++|+.++|..+-+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46889999999999999766643
No 338
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=38.36 E-value=70 Score=20.54 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=27.1
Q ss_pred CEEEEEccCCc---EEEEEecCCCcHHHHHHHhhhhhC
Q 026932 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
|+||-|..++. .-++.+..++||.|+=.+|....+
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~ 39 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLV 39 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 57888877653 346888999999999999886543
No 339
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=37.84 E-value=51 Score=28.73 Aligned_cols=76 Identities=13% Similarity=0.264 Sum_probs=61.1
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEEEEEe
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~---d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
....+.++.++|..+.-+++.++-...++..+...-++....+-|- |-.++.- -+++|.++.+-+...+.|+-+-
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4467888889999999999999999999999998877877777764 6666662 3589999999999988777654
Q ss_pred c
Q 026932 226 R 226 (230)
Q Consensus 226 ~ 226 (230)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 3
No 340
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=37.64 E-value=59 Score=21.28 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=30.3
Q ss_pred chHHHHHHHhchhhCCCCC--ceE--EEECCeecCCCCcccccCCCCCCEEE
Q 026932 173 DTIDNVKAKIQDKEGIPPD--QQR--LIFAGKQLEDGRTLADYNIQKESTLH 220 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~--~~~--l~~~g~~L~d~~tL~~~~i~~g~~i~ 220 (230)
.+.++|+.+.++.+.++.+ ..+ |.-+|.+.+|+.=+.. ++++..+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~ 70 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFV 70 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEE
Confidence 3799999999999999833 244 4468888877642222 34444443
No 341
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.41 E-value=2.1e+02 Score=22.74 Aligned_cols=162 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred ccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcc--------
Q 026932 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQ-------- 125 (230)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~-------- 125 (230)
|+.-+...+..+.+.+.......++|-..=.+.-.+.+....|+.++-..--.-.....+...+. .+|+.
T Consensus 58 l~~~~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~ 137 (239)
T TIGR03028 58 LSKGGFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAGGVTPDGADVITLVREREGKIFRKQIDFP 137 (239)
T ss_pred HhhcCcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcCCCCccCCCeEEEEEecCCeEEEEEEEHH
Q ss_pred --cCCCCchhhcccccCCceEEEEEeecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCC-CCCceEEEECCeec
Q 026932 126 --LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFAGKQL 202 (230)
Q Consensus 126 --L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i-~~~~~~l~~~g~~L 202 (230)
+.....-.++-+++|+.|++.... .+++...-++.-.+.+.++.|+.++-.+.---... .+....++..+..-
T Consensus 138 ~l~~~g~~~~ni~L~~GD~I~V~~~~----~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~~g 213 (239)
T TIGR03028 138 ALFNPGGDNENILVAGGDIIYVDRAP----VFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDDKG 213 (239)
T ss_pred HHHhcCCCcCCcEEcCCCEEEEcCCc----cEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECCCC
Q ss_pred CCCCcccccC--CCCCCEEEE
Q 026932 203 EDGRTLADYN--IQKESTLHL 221 (230)
Q Consensus 203 ~d~~tL~~~~--i~~g~~i~l 221 (230)
.-...-.+.. +++||.|++
T Consensus 214 ~~~~~~~~~~~~l~~gDii~V 234 (239)
T TIGR03028 214 AVEEVSGELGDLVQPDDVIYV 234 (239)
T ss_pred cEEEEecCCCcccCCCCEEEE
No 342
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=37.11 E-value=67 Score=19.41 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=33.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccc
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l 56 (230)
|+|.+.+|+... +..+.|+.|+=..|....+-..- .-..+|+..+-+..|
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl~~~L 50 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDLDHPL 50 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEETTSBB
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCCCCCc
Confidence 456668888776 88899999999999887653221 122677655544444
No 343
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=35.96 E-value=19 Score=30.53 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=42.0
Q ss_pred ecCceEEEEee-ccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcc
Q 026932 160 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 160 ~~~~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL 208 (230)
.+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+.++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 45777777777 67899999999999999999999999999999887544
No 344
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=35 Score=28.85 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=51.3
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhh-CCCCCceEEEECC---eec--CCCCcccccCCCCCCE
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQL--EDGRTLADYNIQKEST 218 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~~~l~~~g---~~L--~d~~tL~~~~i~~g~~ 218 (230)
.|.++..+|+.....+-..++|..|..-+.... |-+-..+.|+..- +.| ..+.|+.++||.|-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488899999888777788899999988887775 5677788888544 444 4578999999998876
No 345
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=35.07 E-value=88 Score=19.41 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=23.6
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEEeecCceEE
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 166 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~ 166 (230)
..|.+.|+.+|+.+.+.-+...+-.+.+... ++.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~~-~~~i~ 61 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKVD-GSRIA 61 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEET-TEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEEC-CEEEE
Confidence 4689999999999998876554444555542 44443
No 346
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=34.68 E-value=1.2e+02 Score=21.08 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.8
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|+.|..--+++ +-.+.|+..+|..++-+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67777777776 45699999999999999999998854
No 347
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=34.29 E-value=1.6e+02 Score=20.36 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.8
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
++|-..+|++..++|....+-.++|.++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 455678899999999999999999999999999877
No 348
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=32.44 E-value=1.7e+02 Score=20.32 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=34.8
Q ss_pred cCCeeeEEEecCCcE--EeeccCCcCcHHHHHHHHHhHhCCC-----CCCeEEE
Q 026932 74 RGGMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLI 120 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~ 120 (230)
.+-|+.++...+++- -.+.|++++|+.++.+.+-+++.+. +....|.
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 345778887666533 4688999999999999999998843 4466665
No 349
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=32.31 E-value=60 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.6
Q ss_pred CEEEEEccCCcEEEEEe---cCCCcHHHH
Q 026932 1 MQIFVKTLTGKTITLEV---ESSDTIDNV 26 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v---~~~~tv~~l 26 (230)
|.|.+.+.+|..|.++. ..+.|+.++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~m 29 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNM 29 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHH
Confidence 78999999999999985 444455443
No 350
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.23 E-value=75 Score=23.36 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+++.+.|+..++=.++|+.|+..+++.+..-.
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVN 114 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVN 114 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEE
Confidence 478999999999999999999999999875433
No 351
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=32.17 E-value=46 Score=23.50 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|+|.+.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888844 4899999999999999988774
No 352
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=31.69 E-value=59 Score=21.19 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
+.+..-+|.+|.++|+.+.-+..-|+.|+..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4556678999999999888777767666653
No 353
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=31.30 E-value=2.3e+02 Score=22.84 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=35.1
Q ss_pred CcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCC--CCchhhcccccCCceEEE
Q 026932 95 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~ 146 (230)
-+.|+..|...+.+-+..-+..|.|.|+|-.... +-++... +.|+.+.+.
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL--~vGDgLRl~ 190 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQL--RVGDGLRLY 190 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEe--ecCCcEEEE
Confidence 4568999999999999988999999998855432 2333333 455555443
No 354
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=31.22 E-value=96 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred chHHHHHHHhchhhCCCC-CceEEEECCeecCCCC
Q 026932 173 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGR 206 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~-~~~~l~~~g~~L~d~~ 206 (230)
.+.++|+.+.++.++++. ....|.-+|.+.+|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEE 55 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHH
Confidence 479999999999999853 2345557888887664
No 355
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=30.98 E-value=99 Score=23.17 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=36.4
Q ss_pred ccccccccccCCeEEEEEEecCCeeeEEEecCCcEEee--ccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCc
Q 026932 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~t 131 (230)
...+.+.+.....+.-+++....+-|.|...+|+.-.+ -+..-..-.|+...+++....--..... -....-.+..+
T Consensus 64 eLFA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~-~~~~~~~~~~p 142 (160)
T PF07933_consen 64 ELFAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEA-EEQSQAAESQP 142 (160)
T ss_dssp SS-EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------
T ss_pred ceEEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhh-hhhhcccCCCC
Confidence 55677878777667777777778889998887876444 4455556788999999887642111111 00111234456
Q ss_pred hhhcccccCCceEEEE
Q 026932 132 LADYNIQKESTLHLVL 147 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~ 147 (230)
=.||.+++|.+|++.+
T Consensus 143 ~~D~sLKeGetI~ini 158 (160)
T PF07933_consen 143 KKDYSLKEGETIKINI 158 (160)
T ss_dssp ----------------
T ss_pred ccCCcCCCCCEEEEec
Confidence 7889999999997754
No 356
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.10 E-value=1e+02 Score=20.23 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=30.8
Q ss_pred chHHHHHHHhchhhCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026932 173 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~-~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
.+.++|+.+.++.+.++. ....|.-+|.+.+++.=++. +.+++.+.+
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~ 68 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMV 68 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh--CCCCCEEEE
Confidence 379999999999998863 34445567888876542222 355555544
No 357
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.07 E-value=1.6e+02 Score=18.91 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.1
Q ss_pred EeeccchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 168 EVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 168 ~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
.++.....-.+-+--++++.+|+..-.++ -+|.-....++-...-++.|+.+.+.-|-+=
T Consensus 32 svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrv 92 (94)
T KOG3483|consen 32 SVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 92 (94)
T ss_pred cCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEecccccc
Confidence 34444444445555666778888877766 5666778889999999999999998876443
No 358
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=28.93 E-value=1.7e+02 Score=19.04 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026932 18 ESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
..+.++.+|+..++..++++..+-..+
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 456899999999999999987765554
No 359
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=27.97 E-value=53 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=39.4
Q ss_pred eeccCCcCcHHHHHHHHHhHhC--CCCCCeEEEecCcccCCCCchhhcc
Q 026932 90 TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
.+.++...||..||.-+..+.+ -+..+.-+++++..|.+..||++.-
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence 4678889999999999999998 4555667889999999999998643
No 360
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.94 E-value=37 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.1
Q ss_pred cCccccccccccCCeEEEE
Q 026932 52 DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 52 d~~~l~~~~i~~~~~i~l~ 70 (230)
+.++|..|||.++..+.+.
T Consensus 93 ~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 93 EDKTLKAAGIENETEISFF 111 (127)
T ss_pred ccchHHHhccCcchhhhhh
Confidence 3577888888877766543
No 361
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=27.60 E-value=1.9e+02 Score=19.13 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=34.9
Q ss_pred CEEEEEccC---CcEEEEEecCCCcHHHHHHH---hhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 1 MQIFVKTLT---GKTITLEVESSDTIDNVKAK---IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~---g~~~~~~v~~~~tv~~lK~~---i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|.|-... .....+++.+++||.+-=+. .+..-++..+..++=.-|+....+ +-+.+|+++.+.-
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d-----~~L~~GDRVEIYR 72 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLD-----TVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT------B--TT-EEEEE-
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCC-----CcCCCCCEEEEec
Confidence 566665432 23667999999999986554 222234666667766667666644 4456788887753
No 362
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=27.19 E-value=1.1e+02 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=14.3
Q ss_pred chhhCCCCCceEEEECCeecCCC
Q 026932 183 QDKEGIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 183 ~~~~~i~~~~~~l~~~g~~L~d~ 205 (230)
|...|.|+-...|+.+|..+.++
T Consensus 5 C~v~g~P~p~v~W~k~~~~l~~~ 27 (76)
T cd05736 5 CHAEGIPLPRLTWLKNGMDITPK 27 (76)
T ss_pred eEeeecCCCEEEEEECCEECCCC
Confidence 33446666667777777766543
No 363
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.09 E-value=71 Score=20.21 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=27.1
Q ss_pred CcHHHHHHHhhhhhCCCCCceeEEecCcccccCccc
Q 026932 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l 56 (230)
.|+.+|.....+++|+++ .-.+.-+|.+.+|-..+
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~I 60 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDVI 60 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEEE
Confidence 799999999999999984 44555678777774444
No 364
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=26.95 E-value=1.3e+02 Score=21.02 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+.|++...+|+..++++.++.|+.+.=..
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHE 29 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 45777778899999999999999887555
No 365
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=26.14 E-value=74 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 198 AGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 198 ~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
+.+-.+|++||+..+++-|+-|.+.....
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecCc
Confidence 34556899999999999999999987653
No 366
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.66 E-value=1.3e+02 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.7
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCcc
Q 026932 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 49 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~ 49 (230)
.|+....|.+|-++|.+.++|++.+-.+. +|...
T Consensus 68 ~Ie~fsnv~ELY~kIAe~F~Is~~dIlfcTlNshK 102 (334)
T KOG3938|consen 68 RIEGFSNVRELYQKIAEAFDISPDDILFCTLNSHK 102 (334)
T ss_pred eecccccHHHHHHHHHHHhcCCccceEEEecCCCc
Confidence 45666789999999999999999876665 45433
No 367
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=25.54 E-value=62 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred cccCCCCchhhcccccCCceEEEEEee
Q 026932 124 KQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 124 ~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+..+|++||+.++++-|+.+.+.+.++
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 456889999999999999999887654
No 368
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=25.41 E-value=55 Score=27.43 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.7
Q ss_pred EEEEeeccchHHHHHHHhchhhC-C-CCCceEEEECCeecCCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~-i-~~~~~~l~~~g~~L~d~~tL~~~ 211 (230)
-.+.++...||.+||+-+..+++ . +..+..+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 45677889999999999999998 3 45567788999999999998743
No 369
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=25.08 E-value=2.1e+02 Score=20.95 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=58.2
Q ss_pred CCcHHHHHHHhhhhhCCCCCceeEEecCccc------ccC-ccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeec
Q 026932 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL------EDG-RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l------~d~-~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~ 92 (230)
-.+..|+|+.|.....+.-..-.+.|+.-+. +++ ..|+ .+....++.+.-.|.+.-++.|...+|..+.-+
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~--RL~~~~NVTvRNDPDGRsRLNvNiFtGdviVTD 89 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLK--RLRSEPNVTVRNDPDGRSRLNVNIFTGDVIVTD 89 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHH--HHHhCCCCeeecCCCccceeeeeEecCCEEEec
Confidence 3578999999999999998888877864222 122 2232 255666778888888888899998999887766
Q ss_pred cCCcCcHHHHH
Q 026932 93 VESSDTIDNVK 103 (230)
Q Consensus 93 v~~~~tV~~lK 103 (230)
+...-+++.++
T Consensus 90 FgD~~~lgNI~ 100 (153)
T PF08756_consen 90 FGDEPPLGNIQ 100 (153)
T ss_pred CCCCCCccccc
Confidence 66555555443
No 370
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=24.58 E-value=44 Score=21.03 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=10.9
Q ss_pred CCcccccCCCCCCEEEE
Q 026932 205 GRTLADYNIQKESTLHL 221 (230)
Q Consensus 205 ~~tL~~~~i~~g~~i~l 221 (230)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 35688899999999865
No 371
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=24.46 E-value=1.3e+02 Score=27.10 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=38.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|+|...+|+++.|+..... .-.+.-|.+.+||+.+.... |..-.|..|.++.+.+-.
T Consensus 443 ~~~i~l~~g~~~~I~a~n~s-------------~~n~YIqsv~lNGk~~~~~~-i~~~~i~~GG~L~f~mg~ 500 (502)
T PF07971_consen 443 KVTIHLGNGKTFTIEAKNNS-------------AENIYIQSVTLNGKPLTRPW-ITHDDIMNGGTLEFEMGD 500 (502)
T ss_dssp EEEEE-CCC-EEEEE-TT-B-------------TTB-EEEEEEETTEEE-SSE-EEHHHHHC-EEEEEEEES
T ss_pred eEEEEcCCCCEEEEEecCCC-------------CCCceEeEEEECCEECcCCE-EeHHHHhCCCEEEEEeCC
Confidence 47787888999999987654 11144689999999998876 666778888888876543
No 372
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=24.45 E-value=1.3e+02 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=33.2
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCcc
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~ 125 (230)
..+.|.|++..|=.++|..|+..+++.+...+-+ ..|+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~ 62 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKP 62 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcc
Confidence 5699999999999999999999999999887655 44543
No 373
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=24.41 E-value=96 Score=20.23 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=28.8
Q ss_pred hHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 174 tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
|-++.+ .+-+++++.+++... .+.++--..+||.++|+.|.+..+
T Consensus 19 s~eE~~-~lL~~y~i~~~qLP~-----I~~~DPv~r~~g~k~GdVvkI~R~ 63 (79)
T PRK09570 19 SEEEAK-KLLKEYGIKPEQLPK-----IKASDPVVKAIGAKPGDVIKIVRK 63 (79)
T ss_pred CHHHHH-HHHHHcCCCHHHCCc-----eeccChhhhhcCCCCCCEEEEEEC
Confidence 344444 344455666665443 334455567889999999998877
No 374
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.30 E-value=1e+02 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=23.4
Q ss_pred cCCCcHHHHHHHhhhh--hCCCCCceeEEecC
Q 026932 18 ESSDTIDNVKAKIQDK--EGIPPDQQRLIFAG 47 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~--~gi~~~~q~l~~~g 47 (230)
..+.+|.|||++|-.. .|--.+-|.|+|+|
T Consensus 22 GTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~ 53 (427)
T COG5222 22 GTGLPVFDLKREIINQRKLGSGKDFDLLFYNG 53 (427)
T ss_pred cCCccHHHHHHHHHHhhhccCCccceEEEecC
Confidence 3488999999998665 45556778889987
No 375
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=24.26 E-value=33 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=13.6
Q ss_pred cHHHHHHHhhhhhCCCCCc
Q 026932 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~ 40 (230)
|+.++.+.|.+.+|+++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~ 19 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVED 19 (70)
T ss_dssp -HHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHHHHHCCCHHH
Confidence 6889999999999998853
No 376
>PHA02090 hypothetical protein
Probab=23.86 E-value=13 Score=22.87 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=22.9
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026932 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
|+-.|....+++-++-+..-=-..+.-..|||.+.|+++
T Consensus 33 ksk~g~lrv~e~m~dg~~ktna~flgy~igip~~eq~~f 71 (79)
T PHA02090 33 KSKEGDLRVIEVMEDGGWKTNAEFLGYAIGIPVNEQKFF 71 (79)
T ss_pred hccCCceEEEEeccCCCccccceeeeeeeCccchHHHHH
Confidence 344566666666666554433344555567887777754
No 377
>PRK08453 fliD flagellar capping protein; Validated
Probab=23.65 E-value=3.1e+02 Score=25.84 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=49.1
Q ss_pred cCCcEEeeccCCcCcHHHHHHHHHhHhC--C--------CCCCeEEEecCcccCCC------CchhhcccccCCceEEEE
Q 026932 84 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 147 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i--------~~~~q~L~~~g~~L~d~------~tL~~~~i~~~~~i~l~~ 147 (230)
.+|+.+.++|+...|+.+|..+|-...+ + .....+|...+...-.+ .+|.+..+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4689999999999999999999995332 1 12246666666554322 233433443333111111
Q ss_pred EeecceeEEEEeecCceEEEEe
Q 026932 148 RLRGGMQIFVKTLTGKTITLEV 169 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v 169 (230)
.-.+.+.+.++...|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 1223466777766676554443
No 378
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=22.89 E-value=2.2e+02 Score=18.31 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=34.5
Q ss_pred EEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEE
Q 026932 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~ 197 (230)
.+..++.+...+++.+..|+.+--.+.-+.-|+.++-+..+.
T Consensus 3 r~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~ 44 (74)
T cd01816 3 RVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFR 44 (74)
T ss_pred eEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEE
Confidence 445567788889999999999998888888899988777763
No 379
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=22.49 E-value=57 Score=20.54 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCcccccCCCCCCEEEEE
Q 026932 205 GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 205 ~~tL~~~~i~~g~~i~l~ 222 (230)
...|...|+++|++|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 457899999999999764
No 380
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=22.10 E-value=1.9e+02 Score=18.64 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=26.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|+|.|=. ..-...+.++.+.|-.++.+.|.+...=.
T Consensus 1 MeIkIGi-~~~~REl~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 1 MEIKIGI-QNVARELVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred CeEEEee-ecCCceEEEecCCCHHHHHHHHHHHHhCC
Confidence 7777733 34456677778889999999998886544
No 381
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=21.88 E-value=2.5e+02 Score=18.65 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=23.7
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026932 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
-.+.|+.++|++.+-..+.+..++.+.+..+.|
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlY 50 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDSLFLY 50 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS-EEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCeEEEE
Confidence 458899999999999999999999876666555
No 382
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=21.69 E-value=1.3e+02 Score=19.45 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=32.8
Q ss_pred HHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026932 177 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 177 ~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
.++..++..+|.+.+..++..+..-=.-...+..--+.-|..|++
T Consensus 5 ~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 5 SIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 578899999999999999988743223334455555677888877
No 383
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=21.37 E-value=1.1e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.9
Q ss_pred CcccccCCCCCCEEEEEEEecCC
Q 026932 206 RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 206 ~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+.|.++|+.+|+.|.+..+.--|
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP~g 46 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAPLG 46 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECCCC
Confidence 56888899999999888775433
No 384
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=21.23 E-value=2.1e+02 Score=18.33 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=26.0
Q ss_pred hHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 174 tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
|-++.+ .+-+++++.+++...+ +..+--..+||.++|+.|.+..+-.
T Consensus 16 s~eE~~-~lL~~y~i~~~qLP~I-----~~~DPv~r~~g~k~GdVvkI~R~S~ 62 (74)
T PF01191_consen 16 SEEEKK-ELLKKYNIKPEQLPKI-----LSSDPVARYLGAKPGDVVKIIRKSE 62 (74)
T ss_dssp -HHHHH-HHHHHTT--TTCSSEE-----ETTSHHHHHTT--TTSEEEEEEEET
T ss_pred CHHHHH-HHHHHhCCChhhCCcc-----cccChhhhhcCCCCCCEEEEEecCC
Confidence 334444 3334457766665443 3444456788999999999888733
No 385
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=21.06 E-value=44 Score=24.17 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEccCCcEEEEEe-cCCCcHHHHHHHhh
Q 026932 4 FVKTLTGKTITLEV-ESSDTIDNVKAKIQ 31 (230)
Q Consensus 4 ~v~~~~g~~~~~~v-~~~~tv~~lK~~i~ 31 (230)
+.++.+|....-.| +|++++.|.|+|..
T Consensus 45 Yskt~g~~~iDr~V~DPND~~~DvkqKWR 73 (140)
T PF04584_consen 45 YSKTIGGNYIDRRVFDPNDEVYDVKQKWR 73 (140)
T ss_pred EeecCCCccccceeeCCCCcccChhhceE
Confidence 35667776555444 89999999999854
No 386
>PRK13605 endoribonuclease SymE; Provisional
Probab=20.98 E-value=1.1e+02 Score=21.34 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=30.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
+.|.|+...|...-.--++.-...+|.+.+.+...+....|+
T Consensus 56 ~~V~V~V~~G~LVIt~~~~~~~~~el~~~l~~v~~~s~~kq~ 97 (113)
T PRK13605 56 TAVDVRVMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQK 97 (113)
T ss_pred CeEEEEEeCCEEEEEeCCCCcccHHHHHHHHHHHHhhhHHHH
Confidence 357788887776555555555688999998888877776654
No 387
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.34 E-value=1.4e+02 Score=21.97 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=30.8
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
...+.|.|+...+=.++|+.|+..+++.+...+-.
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 46899999999999999999999999988777543
No 388
>PF11055 Gsf2: Glucose signalling factor 2; InterPro: IPR022757 This entry represents fungal Glucose singalling factor 2. Gsf2 is localised to the ER and functions to promote the secretion of certain hexose transporters [].
Probab=20.30 E-value=2.5e+02 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.1
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHH-HHHHhh
Q 026932 1 MQIFVKTLTG--KTITLEVESSDTIDN-VKAKIQ 31 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~-lK~~i~ 31 (230)
|.|+|+..+. +-+.++|+.++|+.+ |.+...
T Consensus 1 mEiYvRfNdD~EkDY~FQV~~~~tf~dkl~kIF~ 34 (377)
T PF11055_consen 1 MEIYVRFNDDMEKDYCFQVSTEDTFRDKLFKIFS 34 (377)
T ss_pred CeEEEEecCccccceeEEecccchHHHHHHHHhc
Confidence 8999998865 567899999999999 776655
Done!