Query 026932
Match_columns 230
No_of_seqs 317 out of 2282
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 7.5E-39 2.6E-43 240.2 18.0 153 1-153 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 3.2E-38 1.1E-42 236.8 18.0 154 76-229 2-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 3.3E-38 1.1E-42 239.6 15.8 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1E-37 3.5E-42 236.9 16.4 155 74-228 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 7.9E-37 2.7E-41 227.6 17.9 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 4.1E-36 1.4E-40 223.7 18.0 152 77-228 1-152 (152)
7 2kdi_A Ubiquitin, vacuolar pro 99.8 1E-21 3.6E-26 138.2 2.9 101 1-101 10-113 (114)
8 3phx_B Ubiquitin-like protein 99.8 2.6E-20 9E-25 122.8 9.2 74 1-74 5-78 (79)
9 3plu_A Ubiquitin-like modifier 99.8 3.6E-20 1.2E-24 123.1 8.5 70 1-70 22-91 (93)
10 2kk8_A Uncharacterized protein 99.8 2.8E-20 9.7E-25 123.7 7.9 73 1-73 11-84 (84)
11 4fbj_B NEDD8; effector-HOST ta 99.8 4.9E-20 1.7E-24 123.9 8.7 77 1-77 1-77 (88)
12 1yx5_B Ubiquitin; proteasome, 99.8 1E-19 3.4E-24 125.0 9.4 91 1-91 1-91 (98)
13 3phx_B Ubiquitin-like protein 99.8 1.4E-19 4.8E-24 119.3 9.5 77 151-227 3-79 (79)
14 2kdi_A Ubiquitin, vacuolar pro 99.8 5.9E-21 2E-25 134.3 2.6 104 74-177 7-113 (114)
15 4eew_A Large proline-rich prot 99.8 9.1E-20 3.1E-24 122.7 7.7 88 60-148 1-88 (88)
16 4fbj_B NEDD8; effector-HOST ta 99.8 1.3E-19 4.3E-24 121.9 8.1 77 153-229 1-77 (88)
17 4eew_A Large proline-rich prot 99.8 2E-19 6.7E-24 121.0 9.1 88 136-224 1-88 (88)
18 2lxa_A Ubiquitin-like protein 99.8 8.7E-20 3E-24 121.6 6.8 74 1-74 2-79 (87)
19 1sif_A Ubiquitin; hydrophobic 99.8 1.7E-19 5.8E-24 121.2 8.2 80 151-230 8-87 (88)
20 3plu_A Ubiquitin-like modifier 99.8 1.8E-19 6.1E-24 119.8 8.1 77 70-146 15-91 (93)
21 1ndd_A NEDD8, protein (ubiquit 99.8 3.4E-19 1.2E-23 116.5 9.2 75 1-75 1-75 (76)
22 3v6c_B Ubiquitin; structural g 99.8 3.1E-19 1.1E-23 120.8 8.4 73 1-73 18-90 (91)
23 2faz_A Ubiquitin-like containi 99.8 3.4E-19 1.2E-23 117.1 8.4 73 1-73 3-77 (78)
24 1uh6_A Ubiquitin-like 5; beta- 99.8 2E-19 6.7E-24 122.0 7.1 70 1-70 29-98 (100)
25 3a9j_A Ubiquitin; protein comp 99.8 6.2E-19 2.1E-23 115.2 9.4 75 1-75 1-75 (76)
26 1sif_A Ubiquitin; hydrophobic 99.8 4.6E-19 1.6E-23 119.1 8.8 75 1-75 10-84 (88)
27 4dwf_A HLA-B-associated transc 99.8 4.5E-19 1.5E-23 119.8 8.7 74 1-75 6-79 (90)
28 2hj8_A Interferon-induced 17 k 99.8 3.6E-19 1.2E-23 119.7 7.9 75 1-75 5-79 (88)
29 3dbh_I NEDD8; cell cycle, acti 99.8 3.4E-19 1.2E-23 119.8 7.8 75 1-75 13-87 (88)
30 4hcn_B Polyubiquitin, ubiquiti 99.8 5E-19 1.7E-23 121.3 8.7 75 1-75 23-97 (98)
31 1ndd_A NEDD8, protein (ubiquit 99.8 6.1E-19 2.1E-23 115.2 8.7 76 153-228 1-76 (76)
32 3dbh_I NEDD8; cell cycle, acti 99.8 4E-19 1.4E-23 119.5 7.9 78 151-228 11-88 (88)
33 3n3k_B Ubiquitin; hydrolase, p 99.8 5.6E-19 1.9E-23 118.0 8.4 75 1-75 4-78 (85)
34 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 8.1E-19 2.8E-23 120.0 9.3 79 1-79 2-80 (96)
35 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 7.6E-19 2.6E-23 120.1 8.9 78 152-229 1-78 (96)
36 3n3k_B Ubiquitin; hydrolase, p 99.8 6.8E-19 2.3E-23 117.6 8.4 78 152-229 3-80 (85)
37 3a9j_A Ubiquitin; protein comp 99.8 1.1E-18 3.8E-23 113.9 9.1 76 153-228 1-76 (76)
38 2uyz_B Small ubiquitin-related 99.8 7E-19 2.4E-23 115.9 7.8 76 153-228 4-79 (79)
39 4hcn_B Polyubiquitin, ubiquiti 99.8 7.3E-19 2.5E-23 120.5 8.2 78 151-228 21-98 (98)
40 1yx5_B Ubiquitin; proteasome, 99.8 9.1E-19 3.1E-23 120.1 8.6 91 77-167 1-91 (98)
41 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.5E-18 5.1E-23 116.4 9.3 79 151-229 6-84 (87)
42 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.1E-18 3.7E-23 116.6 8.6 75 1-75 4-78 (85)
43 2uyz_B Small ubiquitin-related 99.8 6.6E-19 2.3E-23 116.0 7.3 75 1-75 4-78 (79)
44 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.1E-18 3.6E-23 117.2 8.3 76 1-76 8-83 (87)
45 4ajy_B Transcription elongatio 99.8 1.1E-18 3.7E-23 121.1 8.3 74 1-74 1-82 (118)
46 2hj8_A Interferon-induced 17 k 99.8 8.4E-19 2.9E-23 117.9 7.4 79 151-229 3-81 (88)
47 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.6E-18 5.6E-23 115.7 8.7 78 152-229 3-80 (85)
48 2dzi_A Ubiquitin-like protein 99.8 1.5E-18 5.2E-23 114.8 8.4 73 1-73 8-80 (81)
49 2kan_A Uncharacterized protein 99.8 1.5E-18 5E-23 117.9 8.1 75 1-76 16-91 (94)
50 1uel_A HHR23B, UV excision rep 99.8 3.2E-18 1.1E-22 116.7 9.8 73 1-73 1-76 (95)
51 1wy8_A NP95-like ring finger p 99.8 2E-18 6.9E-23 116.3 8.8 76 1-76 8-85 (89)
52 3m62_B UV excision repair prot 99.8 8.7E-19 3E-23 121.7 7.1 74 1-74 2-75 (106)
53 2wyq_A HHR23A, UV excision rep 99.8 2.5E-18 8.6E-23 114.8 9.0 74 1-74 6-82 (85)
54 3vdz_A Ubiquitin-40S ribosomal 99.8 2.2E-18 7.6E-23 120.7 8.9 75 1-75 36-110 (111)
55 2kan_A Uncharacterized protein 99.8 2.4E-18 8.3E-23 116.8 8.8 78 151-229 14-92 (94)
56 2kk8_A Uncharacterized protein 99.8 2.2E-18 7.4E-23 114.6 8.3 74 75-148 9-83 (84)
57 1wyw_B Ubiquitin-like protein 99.8 1.9E-18 6.4E-23 118.2 8.1 78 151-228 20-97 (97)
58 3l0w_B Monoubiquitinated proli 99.8 3.4E-18 1.2E-22 128.3 10.1 124 1-128 1-128 (169)
59 4a20_A Ubiquitin-like protein 99.8 2E-18 7E-23 117.5 8.1 73 1-73 20-96 (98)
60 2ojr_A Ubiquitin; lanthide-bin 99.8 2.1E-18 7.2E-23 120.9 8.2 78 151-228 34-111 (111)
61 3vdz_A Ubiquitin-40S ribosomal 99.8 4.1E-18 1.4E-22 119.3 9.3 77 152-228 35-111 (111)
62 1wyw_B Ubiquitin-like protein 99.8 2.1E-18 7E-23 118.0 7.5 75 1-75 22-96 (97)
63 2fnj_B Transcription elongatio 99.8 2.2E-18 7.5E-23 120.1 7.7 72 1-72 1-80 (118)
64 1wy8_A NP95-like ring finger p 99.8 6E-18 2.1E-22 114.0 9.6 79 151-229 6-86 (89)
65 2bwf_A Ubiquitin-like protein 99.8 4.3E-18 1.5E-22 111.5 8.6 72 1-73 5-76 (77)
66 2l7r_A Ubiquitin-like protein 99.8 2.8E-18 9.4E-23 116.4 7.9 73 1-75 20-92 (93)
67 3b1l_X E3 ubiquitin-protein li 99.6 7.2E-20 2.5E-24 119.8 0.0 74 1-74 1-74 (76)
68 2l7r_A Ubiquitin-like protein 99.7 2.4E-18 8.1E-23 116.8 7.3 77 150-228 17-93 (93)
69 3q3f_A Ribonuclease/ubiquitin 99.7 1.5E-18 5.3E-23 131.6 7.0 82 1-82 106-187 (189)
70 3v6c_B Ubiquitin; structural g 99.7 7.4E-18 2.5E-22 114.0 8.6 76 151-226 16-91 (91)
71 2faz_A Ubiquitin-like containi 99.7 1E-17 3.6E-22 110.0 9.1 75 151-225 1-77 (78)
72 2lxa_A Ubiquitin-like protein 99.7 5.9E-18 2E-22 112.7 7.3 73 77-149 2-78 (87)
73 4dwf_A HLA-B-associated transc 99.7 1.4E-17 4.9E-22 112.4 9.2 77 151-228 4-80 (90)
74 2fnj_B Transcription elongatio 99.7 9.3E-18 3.2E-22 117.0 8.4 77 153-230 1-85 (118)
75 1uh6_A Ubiquitin-like 5; beta- 99.7 5.7E-18 1.9E-22 114.8 7.0 71 76-146 28-98 (100)
76 3l0w_B Monoubiquitinated proli 99.7 1.5E-17 5.3E-22 124.8 9.9 83 77-159 1-83 (169)
77 1ttn_A DC-UBP, dendritic cell- 99.7 8.5E-18 2.9E-22 116.8 7.7 74 1-74 24-97 (106)
78 1wgd_A Homocysteine-responsive 99.7 1E-17 3.5E-22 113.7 7.7 75 1-75 8-88 (93)
79 1v2y_A 3300001G02RIK protein; 99.7 3.4E-18 1.2E-22 117.4 5.3 76 1-76 8-99 (105)
80 4ajy_B Transcription elongatio 99.7 2E-17 7E-22 114.7 9.2 77 153-230 1-85 (118)
81 2dzi_A Ubiquitin-like protein 99.7 2.1E-17 7.1E-22 109.3 8.8 75 75-149 6-80 (81)
82 1wgd_A Homocysteine-responsive 99.7 1.3E-17 4.5E-22 113.2 7.9 79 151-229 6-90 (93)
83 2ojr_A Ubiquitin; lanthide-bin 99.7 2.3E-17 8E-22 115.5 9.4 75 1-75 36-110 (111)
84 1yqb_A Ubiquilin 3; structural 99.7 1.3E-17 4.5E-22 114.5 7.9 74 1-75 23-96 (100)
85 3m63_B Ubiquitin domain-contai 99.7 4.2E-18 1.5E-22 117.1 5.3 92 54-148 8-99 (101)
86 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.2E-17 7.4E-22 113.7 8.8 73 1-74 26-98 (101)
87 1wju_A NEDD8 ultimate buster-1 99.7 2.6E-17 9E-22 111.5 8.5 74 155-229 18-95 (100)
88 2wyq_A HHR23A, UV excision rep 99.7 3.3E-17 1.1E-21 109.4 8.8 77 74-150 3-82 (85)
89 1wju_A NEDD8 ultimate buster-1 99.7 2.7E-17 9.4E-22 111.5 8.4 65 86-151 29-93 (100)
90 1uel_A HHR23B, UV excision rep 99.7 4.9E-17 1.7E-21 110.7 9.3 75 77-151 1-78 (95)
91 1we6_A Splicing factor, putati 99.7 2.1E-17 7.3E-22 115.8 7.7 80 150-229 25-108 (111)
92 1wx8_A Riken cDNA 4931431F19; 99.7 1E-17 3.4E-22 114.5 5.8 74 1-75 18-91 (96)
93 4a20_A Ubiquitin-like protein 99.7 2.5E-17 8.4E-22 112.1 7.6 77 74-150 17-97 (98)
94 1we6_A Splicing factor, putati 99.7 2.5E-17 8.7E-22 115.4 7.7 75 1-75 28-106 (111)
95 3m62_B UV excision repair prot 99.7 2.1E-17 7.3E-22 114.7 6.9 75 77-151 2-76 (106)
96 3q3f_A Ribonuclease/ubiquitin 99.7 1.7E-17 6E-22 125.8 6.7 84 75-158 104-187 (189)
97 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5.8E-17 2E-21 113.3 8.8 74 1-74 17-100 (116)
98 1j8c_A Ubiquitin-like protein 99.7 5.6E-17 1.9E-21 115.7 8.8 74 1-75 33-106 (125)
99 3u5e_m 60S ribosomal protein L 99.7 1.1E-18 3.8E-23 125.3 0.0 76 1-76 1-76 (128)
100 4dbg_A Ranbp-type and C3HC4-ty 99.7 6.8E-17 2.3E-21 110.4 8.7 72 1-72 25-99 (105)
101 1wx7_A Ubiquilin 3; ubiquitin- 99.7 5.8E-17 2E-21 112.6 7.9 74 1-75 18-91 (106)
102 3m63_B Ubiquitin domain-contai 99.7 1.5E-17 5.3E-22 114.3 4.7 93 129-224 7-99 (101)
103 1yqb_A Ubiquilin 3; structural 99.7 8.5E-17 2.9E-21 110.4 8.4 77 151-228 21-97 (100)
104 2bwf_A Ubiquitin-like protein 99.7 1.6E-16 5.5E-21 103.9 9.3 72 153-225 5-76 (77)
105 1we7_A SF3A1 protein; structur 99.7 1.1E-16 3.9E-21 112.7 9.1 69 161-229 44-112 (115)
106 3b1l_X E3 ubiquitin-protein li 99.5 2E-18 6.9E-23 112.8 0.0 75 153-227 1-75 (76)
107 1v5o_A 1700011N24RIK protein; 99.7 4.6E-17 1.6E-21 112.3 6.7 74 1-74 8-86 (102)
108 1wx8_A Riken cDNA 4931431F19; 99.7 3.9E-17 1.3E-21 111.5 6.3 77 152-229 17-93 (96)
109 3u5c_f 40S ribosomal protein S 99.7 2.7E-18 9.2E-23 126.1 0.0 75 1-75 1-75 (152)
110 2gow_A HCG-1 protein, ubiquiti 99.7 1.1E-16 3.9E-21 113.4 8.2 74 1-74 18-101 (125)
111 1j8c_A Ubiquitin-like protein 99.7 2E-16 6.8E-21 112.8 9.3 77 152-229 32-108 (125)
112 1se9_A Ubiquitin family; ubiqu 99.7 1.6E-16 5.4E-21 112.0 8.6 75 1-75 17-105 (126)
113 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.5E-16 5.1E-21 109.5 8.3 80 71-151 20-99 (101)
114 1v2y_A 3300001G02RIK protein; 99.7 4E-17 1.4E-21 112.1 5.4 77 76-152 7-99 (105)
115 1ttn_A DC-UBP, dendritic cell- 99.7 1.8E-16 6.3E-21 110.0 8.8 79 151-229 22-100 (106)
116 2kd0_A LRR repeats and ubiquit 99.7 1.7E-16 5.7E-21 105.8 8.2 70 3-72 14-83 (85)
117 1v5t_A 8430435I17RIK protein; 99.7 8.7E-17 3E-21 108.3 6.5 72 1-73 8-83 (90)
118 2kdb_A Homocysteine-responsive 99.7 8.2E-17 2.8E-21 109.8 6.3 70 1-70 24-99 (99)
119 1wgg_A Ubiquitin carboxyl-term 99.7 8.6E-17 3E-21 109.5 6.3 71 1-73 8-79 (96)
120 3u5e_m 60S ribosomal protein L 99.7 5.6E-18 1.9E-22 121.7 0.3 77 153-229 1-77 (128)
121 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.9E-16 9.9E-21 109.1 8.7 76 152-228 17-92 (106)
122 3u5c_f 40S ribosomal protein S 99.7 5.7E-18 2E-22 124.4 0.0 77 153-229 1-77 (152)
123 2dzm_A FAS-associated factor 1 99.7 1.2E-16 4.1E-21 108.9 6.0 73 1-73 9-82 (100)
124 1v5o_A 1700011N24RIK protein; 99.7 2E-16 6.9E-21 109.0 7.2 78 152-229 7-89 (102)
125 1se9_A Ubiquitin family; ubiqu 99.6 9E-16 3.1E-20 108.2 9.7 79 151-229 15-107 (126)
126 1wgh_A Ubiquitin-like 3, HCG-1 99.6 5E-16 1.7E-20 108.5 8.0 78 73-150 13-100 (116)
127 1we7_A SF3A1 protein; structur 99.6 6.4E-16 2.2E-20 108.8 8.7 68 85-152 44-111 (115)
128 1wia_A Hypothetical ubiquitin- 99.6 5.8E-16 2E-20 105.4 7.6 71 1-74 8-79 (95)
129 1x1m_A Ubiquitin-like protein 99.6 4.4E-16 1.5E-20 108.2 7.2 74 1-74 13-101 (107)
130 1v86_A DNA segment, CHR 7, way 99.6 2.7E-16 9.2E-21 106.9 5.7 70 1-72 18-87 (95)
131 1wxv_A BAG-family molecular ch 99.6 7.2E-16 2.5E-20 104.3 7.6 72 1-73 8-85 (92)
132 2dzj_A Synaptic glycoprotein S 99.6 4.9E-16 1.7E-20 103.9 6.2 69 1-69 11-85 (88)
133 1v5t_A 8430435I17RIK protein; 99.6 1.9E-15 6.4E-20 101.8 8.6 74 75-149 6-83 (90)
134 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.7E-15 5.8E-20 103.5 8.3 73 76-148 24-99 (105)
135 2kd0_A LRR repeats and ubiquit 99.6 2.1E-15 7E-20 100.4 8.4 70 155-224 14-83 (85)
136 2kjr_A CG11242; UBL, ubiquitin 99.6 1.6E-15 5.5E-20 102.7 8.0 70 1-70 16-93 (95)
137 2daf_A FLJ35834 protein; hypot 99.6 2.5E-15 8.7E-20 103.6 9.0 76 77-152 16-92 (118)
138 2kdb_A Homocysteine-responsive 99.6 8.2E-16 2.8E-20 104.9 6.4 72 75-146 22-99 (99)
139 2daf_A FLJ35834 protein; hypot 99.6 1.8E-15 6E-20 104.4 7.5 75 2-76 17-92 (118)
140 2gow_A HCG-1 protein, ubiquiti 99.6 1.8E-15 6.3E-20 107.1 7.8 77 153-229 18-104 (125)
141 1x1m_A Ubiquitin-like protein 99.6 3.7E-15 1.3E-19 103.6 8.7 76 75-150 11-101 (107)
142 2xzm_9 RPS31E; ribosome, trans 99.6 9.3E-17 3.2E-21 121.0 0.0 71 1-76 1-71 (189)
143 4b6w_A Tubulin-specific chaper 99.6 3.3E-15 1.1E-19 99.3 7.4 71 2-72 4-83 (86)
144 3ai5_A Yeast enhanced green fl 99.6 4.2E-15 1.4E-19 120.5 8.5 73 1-73 234-306 (307)
145 2io1_B Small ubiquitin-related 99.6 1E-14 3.4E-19 98.5 8.9 79 152-230 7-85 (94)
146 2kj6_A Tubulin folding cofacto 99.6 7.7E-15 2.6E-19 99.6 7.7 70 2-71 16-94 (97)
147 1wgg_A Ubiquitin carboxyl-term 99.6 6.6E-15 2.2E-19 100.1 7.3 71 153-225 8-79 (96)
148 1wxv_A BAG-family molecular ch 99.6 9.2E-15 3.1E-19 98.8 8.0 74 75-149 6-85 (92)
149 1wia_A Hypothetical ubiquitin- 99.6 1.5E-14 5E-19 98.4 8.8 74 151-227 6-80 (95)
150 2kjr_A CG11242; UBL, ubiquitin 99.6 1.5E-14 5.2E-19 97.9 8.2 73 74-146 13-93 (95)
151 1v86_A DNA segment, CHR 7, way 99.5 6.8E-15 2.3E-19 99.9 6.1 72 75-148 16-87 (95)
152 1wf9_A NPL4 family protein; be 99.5 8.2E-15 2.8E-19 101.7 6.5 72 1-73 8-95 (107)
153 2io0_B Small ubiquitin-related 99.5 4.8E-14 1.7E-18 94.5 9.6 79 152-230 5-83 (91)
154 2dzm_A FAS-associated factor 1 99.5 1.1E-14 3.8E-19 99.2 6.3 74 76-149 8-82 (100)
155 4b6w_A Tubulin-specific chaper 99.5 1.6E-14 5.6E-19 95.9 6.5 66 84-149 12-84 (86)
156 2dzj_A Synaptic glycoprotein S 99.5 1.1E-14 3.9E-19 97.2 5.5 70 76-145 10-85 (88)
157 1v6e_A Cytoskeleton-associated 99.5 2.9E-14 9.9E-19 96.9 7.3 70 2-71 9-86 (95)
158 1oqy_A HHR23A, UV excision rep 99.5 2.2E-14 7.5E-19 119.5 7.5 74 1-74 8-85 (368)
159 2kj6_A Tubulin folding cofacto 99.5 6.3E-14 2.1E-18 95.1 8.2 72 76-147 14-94 (97)
160 2xzm_9 RPS31E; ribosome, trans 99.5 1.6E-15 5.5E-20 114.2 0.1 72 153-229 1-72 (189)
161 3ai5_A Yeast enhanced green fl 99.5 5.8E-14 2E-18 113.8 9.1 76 74-149 231-306 (307)
162 1t0y_A Tubulin folding cofacto 99.5 1.1E-13 3.8E-18 98.2 8.5 71 1-71 7-85 (122)
163 2d07_B Ubiquitin-like protein 99.5 2E-13 7E-18 92.0 8.8 77 152-228 17-93 (93)
164 2io1_B Small ubiquitin-related 99.5 9.6E-14 3.3E-18 93.7 7.0 79 75-153 6-84 (94)
165 1oqy_A HHR23A, UV excision rep 99.5 1.2E-13 4E-18 115.2 7.8 77 75-151 6-86 (368)
166 2kzr_A Ubiquitin thioesterase 99.4 9.8E-14 3.3E-18 92.5 5.7 71 1-72 1-77 (86)
167 1wz0_A Ubiquitin-like protein 99.4 2.4E-13 8.3E-18 93.2 7.0 78 152-229 24-101 (104)
168 1v6e_A Cytoskeleton-associated 99.4 2.7E-13 9.4E-18 92.0 6.7 71 77-147 8-86 (95)
169 2eke_C Ubiquitin-like protein 99.4 6.8E-13 2.3E-17 91.0 8.6 76 152-228 31-106 (106)
170 2io0_B Small ubiquitin-related 99.4 4.6E-13 1.6E-17 89.7 7.4 79 75-153 4-82 (91)
171 3shq_A UBLCP1; phosphatase, hy 99.4 2.9E-13 9.9E-18 111.2 6.9 75 1-76 6-83 (320)
172 1wf9_A NPL4 family protein; be 99.4 3.2E-13 1.1E-17 93.6 5.9 72 76-148 7-94 (107)
173 1t0y_A Tubulin folding cofacto 99.4 1.5E-12 5.1E-17 92.4 8.8 71 153-223 7-85 (122)
174 1wm3_A Ubiquitin-like protein 99.4 2E-12 6.8E-17 83.0 7.9 70 1-70 2-71 (72)
175 2k8h_A Small ubiquitin protein 99.4 6.5E-13 2.2E-17 91.8 5.8 77 152-228 26-102 (110)
176 1wm3_A Ubiquitin-like protein 99.4 3.3E-12 1.1E-16 82.0 8.6 70 153-222 2-71 (72)
177 2d07_B Ubiquitin-like protein 99.4 1.4E-12 4.9E-17 87.8 7.1 79 74-152 15-93 (93)
178 2kzr_A Ubiquitin thioesterase 99.3 1.4E-12 4.9E-17 86.8 5.9 70 77-147 1-76 (86)
179 1wz0_A Ubiquitin-like protein 99.3 2.2E-12 7.6E-17 88.4 6.9 79 75-153 23-101 (104)
180 2k8h_A Small ubiquitin protein 99.3 2.3E-12 7.8E-17 89.1 6.8 81 74-154 24-104 (110)
181 3a4r_A Nfatc2-interacting prot 99.3 1.2E-11 4E-16 80.8 9.1 72 75-146 6-78 (79)
182 2eke_C Ubiquitin-like protein 99.3 3.9E-12 1.3E-16 87.3 6.4 77 75-152 30-106 (106)
183 3a4r_A Nfatc2-interacting prot 99.3 1.3E-11 4.4E-16 80.6 8.2 70 1-70 8-78 (79)
184 3shq_A UBLCP1; phosphatase, hy 99.3 5.8E-12 2E-16 103.4 6.9 72 153-225 6-80 (320)
185 1wjn_A Tubulin-folding protein 99.2 2.9E-11 1E-15 82.2 8.2 70 2-71 11-91 (97)
186 3kyd_D Small ubiquitin-related 99.2 2E-10 7E-15 79.5 9.5 75 153-227 41-115 (115)
187 1wjn_A Tubulin-folding protein 99.2 1.9E-10 6.5E-15 78.2 9.0 65 160-224 20-92 (97)
188 3tix_A Ubiquitin-like protein 99.1 3.6E-10 1.2E-14 84.2 7.2 76 153-229 58-133 (207)
189 3pge_A SUMO-modified prolifera 99.0 8E-10 2.7E-14 84.0 8.9 76 153-229 30-105 (200)
190 3kyd_D Small ubiquitin-related 99.0 7.8E-10 2.7E-14 76.5 7.8 76 75-150 39-114 (115)
191 3goe_A DNA repair protein RAD6 98.9 1.8E-08 6.3E-13 63.5 9.4 69 155-223 12-81 (82)
192 3pge_A SUMO-modified prolifera 98.9 3.9E-09 1.3E-13 80.2 7.2 79 73-152 26-104 (200)
193 3v7o_A Minor nucleoprotein VP3 98.9 2.6E-10 8.8E-15 86.1 0.4 77 152-229 21-97 (227)
194 3tix_A Ubiquitin-like protein 98.9 2.2E-09 7.5E-14 80.0 5.0 100 53-153 32-133 (207)
195 3goe_A DNA repair protein RAD6 98.8 1.9E-08 6.5E-13 63.4 8.1 71 77-147 10-81 (82)
196 2pjh_A Protein NPL4, nuclear p 98.8 5.6E-09 1.9E-13 68.0 4.0 69 1-70 5-78 (80)
197 3v7o_A Minor nucleoprotein VP3 98.7 1.2E-09 4.1E-14 82.5 0.1 84 70-154 15-98 (227)
198 2pjh_A Protein NPL4, nuclear p 98.7 3.8E-08 1.3E-12 64.1 5.3 71 75-146 3-78 (80)
199 2jxx_A Nfatc2-interacting prot 98.6 1.8E-07 6.1E-12 62.9 8.5 70 153-222 26-96 (97)
200 2jxx_A Nfatc2-interacting prot 98.5 3.8E-07 1.3E-11 61.2 8.0 72 75-146 24-96 (97)
201 3ivf_A Talin-1; FERM domain, c 98.5 4.4E-06 1.5E-10 70.1 16.4 142 79-224 6-167 (371)
202 3uf8_A Ubiquitin-like protein 98.5 3.7E-07 1.3E-11 70.5 8.4 78 151-229 20-97 (209)
203 2al3_A TUG long isoform; TUG U 98.5 3.3E-07 1.1E-11 60.0 6.5 74 151-224 8-81 (90)
204 4efo_A Serine/threonine-protei 98.5 4E-07 1.4E-11 60.5 6.5 58 8-65 21-80 (94)
205 3ix6_A TS, tsase, thymidylate 98.5 2E-08 6.8E-13 82.7 0.1 78 151-229 20-97 (360)
206 2l76_A Nfatc2-interacting prot 98.4 1.6E-06 5.4E-11 57.3 8.0 70 153-223 22-91 (95)
207 3ivf_A Talin-1; FERM domain, c 98.4 2.3E-05 8E-10 65.7 16.3 133 10-145 12-164 (371)
208 2al3_A TUG long isoform; TUG U 98.3 2.4E-06 8.1E-11 55.9 7.7 74 75-148 8-81 (90)
209 3ix6_A TS, tsase, thymidylate 98.3 5.6E-08 1.9E-12 80.1 -0.0 83 70-153 15-97 (360)
210 2l76_A Nfatc2-interacting prot 98.3 3.4E-06 1.2E-10 55.7 8.1 73 75-148 20-92 (95)
211 3uf8_A Ubiquitin-like protein 98.2 2.1E-06 7.2E-11 66.2 6.9 82 70-152 15-96 (209)
212 2kc2_A Talin-1, F1; FERM, adhe 98.2 3.1E-06 1.1E-10 59.5 5.8 70 3-72 14-122 (128)
213 2ylm_A Ubiquitin carboxyl-term 98.1 0.00011 3.8E-09 64.3 16.4 184 12-196 37-286 (530)
214 4da1_A Protein phosphatase 1K, 98.1 3.4E-07 1.2E-11 77.4 0.0 76 153-229 31-106 (389)
215 4efo_A Serine/threonine-protei 98.1 9.5E-06 3.2E-10 53.8 6.7 63 161-223 22-87 (94)
216 2kc2_A Talin-1, F1; FERM, adhe 98.1 5.9E-06 2E-10 58.0 5.8 71 154-224 13-122 (128)
217 4da1_A Protein phosphatase 1K, 98.0 8.7E-07 3E-11 74.9 0.0 83 74-157 28-110 (389)
218 2bps_A YUKD protein; ubiquitin 97.7 0.00011 3.6E-09 47.4 6.4 68 2-69 6-80 (81)
219 3qx1_A FAS-associated factor 1 97.7 0.00022 7.6E-09 46.5 7.8 70 153-223 8-82 (84)
220 2bps_A YUKD protein; ubiquitin 97.6 0.00018 6.1E-09 46.3 6.4 62 160-221 14-80 (81)
221 3qx1_A FAS-associated factor 1 97.6 0.00059 2E-08 44.4 8.7 68 2-70 9-81 (84)
222 2ylm_A Ubiquitin carboxyl-term 97.5 0.01 3.5E-07 51.9 18.4 198 9-206 251-501 (530)
223 2dzk_A UBX domain-containing p 97.3 0.0011 3.7E-08 45.4 7.3 72 153-224 14-90 (109)
224 1wj4_A KIAA0794 protein; UBX d 97.3 0.00078 2.7E-08 47.3 6.5 71 75-146 42-117 (124)
225 2dzk_A UBX domain-containing p 97.2 0.002 6.8E-08 44.1 8.2 71 76-146 13-88 (109)
226 1wj4_A KIAA0794 protein; UBX d 97.0 0.0023 7.9E-08 44.8 7.2 71 153-224 44-119 (124)
227 2l32_A Small archaeal modifier 97.0 0.0038 1.3E-07 39.5 7.1 60 1-70 1-60 (74)
228 2daj_A KIAA0977 protein, COBL- 97.0 0.0029 9.8E-08 40.4 6.3 65 75-139 9-76 (91)
229 4a3p_A Ubiquitin carboxyl-term 96.7 0.0051 1.7E-07 47.4 7.5 67 164-230 141-214 (217)
230 2cr5_A Reproduction 8; UBX dom 96.6 0.0076 2.6E-07 41.1 7.0 71 153-224 24-98 (109)
231 2cr5_A Reproduction 8; UBX dom 96.6 0.009 3.1E-07 40.8 7.1 70 76-146 23-96 (109)
232 3jyu_A Ubiquitin carboxyl-term 96.5 0.016 5.5E-07 45.1 8.8 67 164-230 153-226 (231)
233 2daj_A KIAA0977 protein, COBL- 96.4 0.0063 2.2E-07 38.9 5.1 63 153-215 11-76 (91)
234 1s3s_G P47 protein; AAA ATPase 96.3 0.014 4.8E-07 40.9 6.9 67 75-141 51-121 (127)
235 1s3s_G P47 protein; AAA ATPase 96.1 0.012 4.2E-07 41.2 5.9 67 153-219 53-123 (127)
236 1ryj_A Unknown; beta/alpha pro 96.1 0.11 3.8E-06 32.1 9.5 67 152-228 4-70 (70)
237 2juo_A GA-binding protein alph 96.0 0.063 2.2E-06 34.1 8.1 61 165-225 5-65 (89)
238 4e71_A Plexin-B2, MM1; transme 95.8 0.056 1.9E-06 36.7 7.6 63 162-224 23-110 (111)
239 4e71_A Plexin-B2, MM1; transme 95.7 0.047 1.6E-06 37.1 7.0 62 86-147 23-109 (111)
240 2l32_A Small archaeal modifier 95.5 0.031 1E-06 35.2 5.2 66 153-229 1-66 (74)
241 2r2o_A Plexin-B1; effector dom 95.5 0.083 2.9E-06 37.1 7.8 65 162-226 40-130 (138)
242 3h6n_A Plexin-D1; structural g 95.4 0.17 5.8E-06 35.1 9.0 65 161-225 15-105 (127)
243 2r2o_A Plexin-B1; effector dom 95.1 0.079 2.7E-06 37.3 6.8 65 86-150 40-130 (138)
244 2juo_A GA-binding protein alph 95.1 0.13 4.6E-06 32.7 7.1 61 13-73 5-65 (89)
245 4a3p_A Ubiquitin carboxyl-term 95.0 0.061 2.1E-06 41.3 6.7 62 89-150 142-210 (217)
246 1oey_A P67-PHOX, neutrophil cy 95.0 0.063 2.2E-06 34.5 5.5 46 77-124 6-51 (83)
247 3jyu_A Ubiquitin carboxyl-term 94.6 0.085 2.9E-06 40.9 6.5 62 89-150 154-222 (231)
248 3rpf_C Molybdopterin convertin 94.5 0.18 6.3E-06 31.4 6.9 68 1-73 1-71 (74)
249 1ryj_A Unknown; beta/alpha pro 94.5 0.2 6.9E-06 30.9 7.0 63 76-148 4-66 (70)
250 1vjk_A Molybdopterin convertin 94.3 0.31 1.1E-05 32.2 8.0 73 151-228 8-98 (98)
251 3h6n_A Plexin-D1; structural g 94.0 0.27 9.1E-06 34.1 7.2 64 85-148 15-104 (127)
252 4e74_A Plexin-A4; RBD, structu 93.8 0.25 8.6E-06 33.8 6.7 64 86-149 26-115 (117)
253 4e74_A Plexin-A4; RBD, structu 93.7 0.18 6.2E-06 34.5 5.9 64 162-225 26-115 (117)
254 1oey_A P67-PHOX, neutrophil cy 93.5 0.18 6.1E-06 32.4 5.3 45 3-47 6-50 (83)
255 1tyg_B YJBS; alpha beta barrel 93.3 0.32 1.1E-05 31.5 6.4 58 166-228 29-87 (87)
256 2kvr_A Ubiquitin carboxyl-term 93.3 0.089 3.1E-06 36.9 4.0 35 12-46 57-91 (130)
257 1vjk_A Molybdopterin convertin 93.3 0.68 2.3E-05 30.5 8.2 67 1-72 10-94 (98)
258 3rpf_C Molybdopterin convertin 93.0 0.55 1.9E-05 29.2 7.0 57 167-228 16-74 (74)
259 3po0_A Small archaeal modifier 91.7 0.72 2.5E-05 29.7 6.6 61 163-228 18-89 (89)
260 1ef1_A Moesin; membrane, FERM 91.6 0.95 3.3E-05 36.0 8.7 72 153-225 2-79 (294)
261 1tyg_B YJBS; alpha beta barrel 91.5 0.78 2.7E-05 29.6 6.5 58 9-73 26-84 (87)
262 3kuz_A Plexin-C1; structural g 91.1 1.1 3.9E-05 30.8 7.2 61 163-223 39-125 (126)
263 1h4r_A Merlin; FERM, neurofibr 90.9 1.1 3.8E-05 36.0 8.5 74 151-225 21-99 (314)
264 1f0z_A THis protein; ubiquitin 90.7 0.37 1.3E-05 29.2 4.2 57 167-228 10-66 (66)
265 2cu3_A Unknown function protei 90.7 0.62 2.1E-05 28.0 5.2 60 161-228 5-64 (64)
266 2k5p_A THis protein, thiamine- 90.5 0.72 2.5E-05 29.1 5.5 63 85-152 6-69 (78)
267 3dwg_C 9.5 kDa culture filtrat 90.5 1.3 4.6E-05 28.6 7.1 72 1-74 1-91 (93)
268 1fm0_D Molybdopterin convertin 90.4 0.57 1.9E-05 29.5 5.1 59 164-228 18-81 (81)
269 2kvr_A Ubiquitin carboxyl-term 90.0 0.32 1.1E-05 34.1 3.8 33 89-121 58-90 (130)
270 2i1j_A Moesin; FERM, coiled-co 89.7 1.5 5.1E-05 38.7 8.7 73 152-225 4-82 (575)
271 3dwg_C 9.5 kDa culture filtrat 89.7 2.7 9.2E-05 27.1 8.1 61 166-228 20-93 (93)
272 2kl0_A Putative thiamin biosyn 89.4 0.52 1.8E-05 29.4 4.1 61 161-229 6-66 (73)
273 1ip9_A BEM1 protein; ubiquitin 89.2 1.8 6.1E-05 27.6 6.5 46 75-123 11-57 (85)
274 1vd2_A Protein kinase C, IOTA 89.2 2 6.7E-05 27.8 6.9 45 3-47 7-53 (89)
275 2k5p_A THis protein, thiamine- 89.0 0.42 1.4E-05 30.2 3.5 62 161-229 6-70 (78)
276 2q5w_D Molybdopterin convertin 89.0 0.49 1.7E-05 29.5 3.9 59 164-228 17-77 (77)
277 1vd2_A Protein kinase C, IOTA 88.5 2 6.8E-05 27.8 6.5 48 77-125 7-55 (89)
278 2kl0_A Putative thiamin biosyn 88.3 0.91 3.1E-05 28.2 4.7 59 85-151 6-64 (73)
279 3kuz_A Plexin-C1; structural g 88.2 1.4 4.9E-05 30.3 5.9 60 87-146 39-124 (126)
280 1ip9_A BEM1 protein; ubiquitin 88.0 1.7 5.7E-05 27.8 5.7 34 4-37 14-48 (85)
281 3qa8_A MGC80376 protein; kinas 87.2 0.73 2.5E-05 41.5 5.1 52 9-60 320-372 (676)
282 2kmm_A Guanosine-3',5'-BIS(dip 87.0 2.3 8E-05 25.9 6.2 61 1-70 1-61 (73)
283 1ef1_A Moesin; membrane, FERM 86.9 3.6 0.00012 32.6 8.8 71 77-148 2-78 (294)
284 4eut_A Serine/threonine-protei 86.7 3.3 0.00011 34.2 8.7 53 9-61 320-374 (396)
285 3po0_A Small archaeal modifier 86.7 2.2 7.5E-05 27.3 6.1 60 87-151 18-88 (89)
286 3hm6_X Plexin-B1; structural g 86.5 3.7 0.00012 36.2 8.9 63 163-225 274-362 (644)
287 1rws_A Hypothetical protein PF 86.5 0.2 6.7E-06 31.6 0.8 55 165-228 23-77 (77)
288 1h4r_A Merlin; FERM, neurofibr 85.2 3.7 0.00013 32.9 8.1 74 74-148 20-98 (314)
289 3ig3_A Plxna3 protein; plexin 85.2 4.3 0.00015 35.7 8.7 65 162-226 246-336 (627)
290 2g1e_A Hypothetical protein TA 84.9 2.5 8.4E-05 27.0 5.7 62 166-228 18-90 (90)
291 2q5w_D Molybdopterin convertin 84.6 1.8 6.2E-05 26.8 4.7 56 87-148 16-73 (77)
292 1fm0_D Molybdopterin convertin 84.5 1.9 6.5E-05 26.9 4.9 57 87-149 17-78 (81)
293 1wgk_A Riken cDNA 2900073H19 p 83.9 7.3 0.00025 26.3 7.8 75 77-152 12-108 (114)
294 3qij_A Protein 4.1; cytoskelet 83.3 2.9 9.9E-05 33.4 6.6 74 151-224 16-95 (296)
295 2cu3_A Unknown function protei 82.8 2.8 9.7E-05 25.0 4.9 57 8-72 4-60 (64)
296 1j0g_A Hypothetical protein 18 82.8 4.8 0.00017 25.2 5.8 64 166-229 27-91 (92)
297 2c7h_A RBBP6, retinoblastoma-b 82.6 4.6 0.00016 25.9 5.9 71 155-229 9-85 (86)
298 2i1j_A Moesin; FERM, coiled-co 82.4 5.5 0.00019 35.1 8.4 73 75-148 3-81 (575)
299 1wgy_A RAP guanine nucleotide 82.0 7.4 0.00025 25.9 7.0 66 8-73 17-87 (104)
300 2qjl_A URM1, ubiquitin-related 81.7 8.6 0.00029 25.0 8.3 72 1-73 2-96 (99)
301 1f0z_A THis protein; ubiquitin 81.6 1.9 6.4E-05 26.0 3.8 58 85-149 6-63 (66)
302 3ig3_A Plxna3 protein; plexin 81.3 4.1 0.00014 35.8 7.0 65 86-150 246-336 (627)
303 2l52_A Methanosarcina acetivor 80.4 9.7 0.00033 24.8 7.4 68 1-72 4-95 (99)
304 1rws_A Hypothetical protein PF 79.7 0.8 2.7E-05 28.7 1.6 49 90-147 24-72 (77)
305 3hm6_X Plexin-B1; structural g 79.4 5.1 0.00017 35.3 7.0 63 87-149 274-362 (644)
306 1wgk_A Riken cDNA 2900073H19 p 78.5 13 0.00044 25.1 8.3 62 164-228 31-108 (114)
307 1q1o_A Cell division control p 78.5 2.5 8.4E-05 27.9 3.7 28 10-37 22-49 (98)
308 1wgy_A RAP guanine nucleotide 78.4 10 0.00036 25.1 6.8 72 77-148 10-86 (104)
309 2k9x_A Tburm1, uncharacterized 76.7 2 6.8E-05 29.0 3.0 76 76-153 4-103 (110)
310 1wgr_A Growth factor receptor- 75.8 5.9 0.0002 26.2 5.0 60 76-135 9-75 (100)
311 3qij_A Protein 4.1; cytoskelet 75.1 4.7 0.00016 32.1 5.3 59 1-59 18-82 (296)
312 2k9x_A Tburm1, uncharacterized 73.9 3.2 0.00011 28.0 3.5 64 163-228 21-102 (110)
313 1y8x_B Ubiquitin-activating en 73.8 4.4 0.00015 26.7 4.0 60 11-70 5-82 (98)
314 1q1o_A Cell division control p 73.3 5.1 0.00017 26.4 4.2 37 77-113 6-49 (98)
315 1wgr_A Growth factor receptor- 72.8 6.9 0.00024 25.8 4.8 69 153-221 10-89 (100)
316 2inc_C TOUB protein; DIIRON, 4 72.7 15 0.00052 23.2 7.3 60 165-224 15-82 (83)
317 3qa8_A MGC80376 protein; kinas 71.7 3.9 0.00013 36.8 4.4 51 161-211 320-371 (676)
318 4eut_A Serine/threonine-protei 71.7 8.7 0.0003 31.6 6.4 52 162-213 321-374 (396)
319 2g1e_A Hypothetical protein TA 71.2 16 0.00056 22.9 6.7 58 14-72 18-86 (90)
320 3ge3_C Toluene-4-monooxygenase 70.9 17 0.00058 23.0 6.2 59 165-223 17-82 (84)
321 2kmm_A Guanosine-3',5'-BIS(dip 70.8 10 0.00035 22.8 5.1 62 154-224 2-63 (73)
322 2kmc_A Fermitin family homolog 70.4 20 0.00068 23.5 8.7 70 2-71 21-98 (102)
323 3ge3_C Toluene-4-monooxygenase 70.3 18 0.0006 22.9 6.0 57 90-146 18-81 (84)
324 2qjl_A URM1, ubiquitin-related 70.2 19 0.00066 23.3 6.9 65 163-228 20-99 (99)
325 3onh_A Ubiquitin-activating en 70.0 9.4 0.00032 26.3 5.0 51 172-222 19-77 (127)
326 2inc_C TOUB protein; DIIRON, 4 69.0 19 0.00065 22.7 6.5 58 90-147 16-81 (83)
327 3u52_E Phenol hydroxylase comp 66.8 24 0.00081 23.9 6.4 62 163-224 38-109 (119)
328 1v8c_A MOAD related protein; r 66.4 8.7 0.0003 27.9 4.7 62 166-229 17-88 (168)
329 1j0g_A Hypothetical protein 18 66.1 22 0.00074 22.3 6.6 61 90-150 27-88 (92)
330 3onh_A Ubiquitin-activating en 66.0 12 0.0004 25.8 4.9 51 96-147 19-78 (127)
331 1y8x_B Ubiquitin-activating en 65.8 13 0.00044 24.4 4.9 59 88-146 6-82 (98)
332 3r8s_T 50S ribosomal protein L 65.7 9.2 0.00032 24.8 4.2 40 10-49 27-67 (93)
333 2c7h_A RBBP6, retinoblastoma-b 64.4 17 0.00059 23.2 5.1 67 3-73 9-81 (86)
334 3au4_A Myosin-X; protein-prote 62.2 26 0.00088 30.5 7.7 60 75-134 215-280 (555)
335 1vq8_S 50S ribosomal protein L 61.8 10 0.00035 24.2 3.8 33 10-42 22-54 (85)
336 3h9d_A ATG8, microtubule-assoc 60.0 15 0.00052 25.0 4.6 47 165-211 50-97 (119)
337 2l52_A Methanosarcina acetivor 59.4 19 0.00065 23.4 5.0 60 167-228 23-99 (99)
338 2r2q_A Gamma-aminobutyric acid 59.1 31 0.0011 23.0 6.0 46 90-135 47-93 (110)
339 2dhz_A RAP guanine nucleotide 58.1 29 0.00098 23.7 5.7 70 77-146 10-90 (120)
340 3tve_T 50S ribosomal protein L 57.6 12 0.00043 24.2 3.7 39 10-48 21-60 (92)
341 1pqs_A Cell division control p 57.0 11 0.00039 23.4 3.3 27 11-37 2-28 (77)
342 2kmc_A Fermitin family homolog 56.8 38 0.0013 22.1 8.8 69 78-146 21-97 (102)
343 2zjd_A Microtubule-associated 56.6 42 0.0014 23.2 6.5 58 90-147 56-118 (130)
344 3j21_T 50S ribosomal protein L 56.3 15 0.00053 23.4 3.9 33 10-42 23-55 (86)
345 2hj1_A Hypothetical protein; s 56.3 33 0.0011 22.3 5.6 56 163-223 26-84 (97)
346 2hj1_A Hypothetical protein; s 56.3 39 0.0013 22.0 6.6 56 11-71 26-84 (97)
347 2zjr_Q 50S ribosomal protein L 56.2 13 0.00043 24.3 3.5 36 12-47 24-60 (95)
348 3r8s_T 50S ribosomal protein L 55.6 28 0.00097 22.5 5.2 40 86-125 27-67 (93)
349 3hvz_A Uncharacterized protein 54.3 30 0.001 21.5 5.0 60 2-70 7-66 (78)
350 3au4_A Myosin-X; protein-prote 53.9 26 0.00089 30.4 6.3 38 1-38 217-254 (555)
351 2zjd_A Microtubule-associated 53.8 34 0.0012 23.6 5.6 47 165-211 55-103 (130)
352 2dhz_A RAP guanine nucleotide 53.4 25 0.00085 24.0 4.7 64 9-72 18-92 (120)
353 3m95_A Autophagy related prote 53.3 17 0.00057 25.0 3.9 47 165-211 55-102 (125)
354 2lgx_A Fermitin family homolog 51.2 32 0.0011 22.9 4.8 67 79-146 29-100 (112)
355 4gmv_A RAS-associated and plec 50.8 37 0.0013 26.8 6.2 59 77-135 32-97 (281)
356 2eel_A Cell death activator CI 50.5 21 0.00072 23.0 3.8 47 174-223 29-77 (91)
357 1pqs_A Cell division control p 49.8 15 0.00051 22.9 3.0 36 88-123 3-43 (77)
358 2cu1_A Mitogen-activated prote 49.4 53 0.0018 21.5 6.0 43 2-47 8-51 (103)
359 2v1y_A Phosphatidylinositol-4, 49.3 33 0.0011 22.9 4.8 30 4-33 23-52 (108)
360 3hk0_A Growth factor receptor- 48.8 70 0.0024 24.8 7.4 59 77-135 9-74 (256)
361 2v1y_A Phosphatidylinositol-4, 48.5 27 0.00092 23.3 4.2 36 75-110 18-53 (108)
362 3u52_E Phenol hydroxylase comp 48.3 61 0.0021 21.9 6.8 60 11-70 38-107 (119)
363 1n62_A Carbon monoxide dehydro 48.1 19 0.00067 26.0 3.8 28 2-30 5-32 (166)
364 3tve_T 50S ribosomal protein L 47.8 25 0.00084 22.7 3.9 38 163-200 22-60 (92)
365 3lxf_A Ferredoxin; iron, iron- 46.4 25 0.00087 23.0 4.0 28 2-29 2-29 (104)
366 1ffv_A CUTS, iron-sulfur prote 45.0 23 0.0008 25.5 3.8 34 2-36 5-38 (163)
367 1c1y_B Proto-onkogene serine/t 44.8 54 0.0018 20.4 4.9 42 155-196 4-45 (77)
368 3rui_B Autophagy-related prote 44.2 71 0.0024 21.6 6.6 46 90-135 50-96 (118)
369 1t3q_A Quinoline 2-oxidoreduct 44.1 29 0.00098 25.0 4.2 29 1-30 10-38 (168)
370 3pvl_A Myosin VIIA isoform 1; 43.8 54 0.0018 29.3 6.7 47 75-121 262-309 (655)
371 2r2q_A Gamma-aminobutyric acid 43.3 41 0.0014 22.4 4.6 45 14-58 47-92 (110)
372 2zjr_Q 50S ribosomal protein L 43.3 28 0.00095 22.6 3.6 36 89-124 25-61 (95)
373 3pvl_A Myosin VIIA isoform 1; 43.3 35 0.0012 30.5 5.4 39 1-39 264-302 (655)
374 2eel_A Cell death activator CI 43.2 47 0.0016 21.4 4.6 48 97-147 28-77 (91)
375 1vq8_S 50S ribosomal protein L 43.2 22 0.00077 22.6 3.1 35 86-120 22-56 (85)
376 3h9d_A ATG8, microtubule-assoc 42.7 40 0.0014 22.9 4.5 44 15-58 52-96 (119)
377 3m95_A Autophagy related prote 42.6 43 0.0015 23.0 4.6 44 15-58 57-101 (125)
378 1rm6_C 4-hydroxybenzoyl-COA re 41.9 40 0.0014 24.1 4.7 36 1-36 1-37 (161)
379 3rui_B Autophagy-related prote 41.7 52 0.0018 22.3 4.9 43 15-57 51-94 (118)
380 3hrd_D Nicotinate dehydrogenas 41.6 29 0.00099 24.9 3.8 28 1-29 4-31 (160)
381 2bt6_A Adrenodoxin 1; rutheniu 41.4 31 0.0011 22.6 3.8 28 2-29 8-35 (108)
382 4gdk_A Ubiquitin-like protein 40.0 72 0.0025 20.4 6.0 45 90-134 23-69 (91)
383 3tca_A Amyloid beta A4 precurs 39.9 67 0.0023 24.8 6.2 39 3-41 37-75 (291)
384 1eo6_A GATE-16, golgi-associat 38.7 53 0.0018 22.1 4.6 44 15-58 49-93 (117)
385 2zkr_s 60S ribosomal protein L 38.1 34 0.0012 24.4 3.7 33 10-42 93-125 (156)
386 1eo6_A GATE-16, golgi-associat 37.9 90 0.0031 20.9 6.4 57 91-147 49-109 (117)
387 1f2r_I Inhibitor of caspase-ac 37.2 43 0.0015 22.0 3.8 34 173-206 37-74 (100)
388 4gmv_A RAS-associated and plec 37.1 77 0.0026 25.0 6.0 68 3-70 34-112 (281)
389 3tca_A Amyloid beta A4 precurs 36.8 73 0.0025 24.6 6.0 41 77-117 35-75 (291)
390 3j21_T 50S ribosomal protein L 36.1 35 0.0012 21.7 3.2 35 86-120 23-57 (86)
391 2y5c_A Adrenodoxin-like protei 35.9 43 0.0015 21.9 3.8 28 2-29 7-34 (109)
392 3chb_D Cholera toxin; toxin/re 35.9 38 0.0013 21.2 3.2 31 3-33 39-69 (104)
393 2wlb_A ETP1-FD, electron trans 35.8 45 0.0015 21.5 3.9 28 2-29 5-32 (103)
394 3u5e_X 60S ribosomal protein L 35.6 40 0.0014 23.7 3.6 32 11-42 80-111 (142)
395 3e19_A FEOA; transcriptional r 35.3 50 0.0017 20.0 3.8 29 130-159 29-57 (77)
396 4a17_R RPL23A, 60S ribosomal p 35.1 42 0.0014 23.8 3.7 33 10-42 87-119 (150)
397 1uiz_A MIF, macrophage migrati 33.5 97 0.0033 20.2 5.4 85 20-123 17-101 (115)
398 4gdk_A Ubiquitin-like protein 32.9 67 0.0023 20.6 4.2 35 13-47 22-57 (91)
399 1uwm_A Ferredoxin VI, FDVI; el 32.8 61 0.0021 21.0 4.2 28 2-29 2-29 (106)
400 2k5l_A FEOA; structure, NESG, 32.4 66 0.0022 19.7 4.1 29 130-158 26-54 (81)
401 1xlq_A Putidaredoxin, PDX; [2F 32.0 57 0.002 21.1 3.9 28 2-29 2-29 (106)
402 1wz3_A Autophagy 12B, ATG12B, 31.9 1E+02 0.0036 19.9 5.2 57 164-224 29-90 (96)
403 1awd_A Ferredoxin; electron tr 30.5 53 0.0018 20.7 3.5 28 1-29 1-28 (94)
404 3hui_A Ferredoxin; cytochrome 29.9 71 0.0024 21.7 4.2 28 2-29 23-50 (126)
405 3cjl_A Domain of unknown funct 29.8 61 0.0021 20.7 3.5 39 1-39 6-46 (88)
406 4dxa_B KREV interaction trappe 29.5 66 0.0023 25.6 4.6 35 1-39 6-42 (322)
407 2k4y_A FEOA-like protein; GFT 29.0 75 0.0026 19.8 3.9 29 130-158 29-57 (86)
408 2lte_A Specialized acyl carrie 35.1 12 0.0004 24.7 0.0 73 22-110 27-99 (103)
409 3iz5_X 60S ribosomal protein L 29.0 45 0.0015 23.7 3.0 32 11-42 90-121 (152)
410 2os5_A Acemif; macrophage migr 27.6 83 0.0028 20.7 4.2 86 19-123 16-101 (119)
411 2qwv_A UPF0217 protein VC_A105 27.6 1.4E+02 0.0049 22.3 5.7 65 135-199 50-115 (208)
412 3bbo_V Ribosomal protein L23; 27.3 32 0.0011 25.4 2.1 31 10-40 131-161 (198)
413 1frr_A Ferredoxin I; electron 27.0 68 0.0023 20.1 3.6 27 2-29 3-29 (95)
414 2nvu_B Maltose binding protein 26.3 94 0.0032 28.3 5.5 59 164-222 713-789 (805)
415 1ltr_D ETB-R2, heat-labIle ent 25.2 51 0.0017 21.0 2.4 31 3-33 38-68 (113)
416 1c1y_B Proto-onkogene serine/t 25.1 1.3E+02 0.0043 18.7 5.4 42 79-120 4-45 (77)
417 3hk0_A Growth factor receptor- 24.6 1.3E+02 0.0043 23.3 5.2 55 3-57 11-72 (256)
418 2lx9_A Ferrous iron transport 24.3 1.1E+02 0.0039 18.8 4.1 29 130-158 24-52 (83)
419 2wkb_A Macrophage migration in 24.1 1.6E+02 0.0055 19.5 5.8 81 23-123 20-101 (125)
420 1hmj_A RPB5, protein (subunit 23.8 64 0.0022 20.1 2.7 45 174-224 16-60 (78)
421 1iue_A Ferredoxin; electron tr 23.5 1E+02 0.0035 19.5 3.9 26 3-29 5-30 (98)
422 4i3s_G Outer domain of HIV-1 G 23.4 2.2E+02 0.0077 20.9 6.0 73 113-186 2-77 (190)
423 4dxe_H ACP, acyl carrier prote 23.4 53 0.0018 21.3 2.5 41 164-213 17-58 (101)
424 1jq4_A Methane monooxygenase c 22.9 92 0.0031 19.7 3.6 27 3-29 7-33 (98)
425 1af8_A Actinorhodin polyketide 22.6 31 0.0011 21.2 1.1 79 20-110 4-82 (86)
426 1wri_A Ferredoxin II, ferredox 22.6 95 0.0033 19.4 3.6 34 2-39 3-36 (93)
427 4dxa_B KREV interaction trappe 22.5 91 0.0031 24.8 4.2 45 75-123 4-53 (322)
428 1ibx_B Chimera of IGG binding 22.2 74 0.0025 22.3 3.0 39 97-135 82-124 (145)
429 1a70_A Ferredoxin; iron-sulfur 22.1 1.1E+02 0.0039 19.2 3.9 26 3-29 5-30 (97)
430 1rrb_A RAF-1 RBD, RAF proto-on 21.3 1.8E+02 0.0063 19.1 5.1 42 155-196 21-62 (107)
431 2h3j_A Hypothetical protein PA 21.0 52 0.0018 19.7 1.9 20 206-225 25-44 (75)
432 2xcz_A Possible ATLS1-like lig 20.9 1.1E+02 0.0037 19.9 3.7 81 23-123 20-101 (115)
433 1b9r_A Protein (terpredoxin); 20.9 51 0.0018 21.3 2.0 28 2-29 2-29 (105)
434 4eku_A Protein-tyrosine kinase 20.7 2.6E+02 0.009 23.0 6.7 52 160-211 35-97 (392)
435 2zkr_s 60S ribosomal protein L 20.6 79 0.0027 22.5 3.0 34 87-120 94-127 (156)
436 2al6_A Focal adhesion kinase 1 20.5 71 0.0024 26.1 3.2 55 81-135 12-77 (375)
437 2gcx_A FEOA, ferrous iron tran 20.5 78 0.0027 18.9 2.7 30 130-159 24-53 (75)
438 2jrh_A Mitogen-activated prote 20.4 1.8E+02 0.0061 18.6 5.3 42 3-47 5-47 (94)
439 1hfo_A Migration inhibitory fa 20.4 1.8E+02 0.0062 18.7 5.3 83 22-123 18-100 (113)
440 2k5f_A Ferrous iron transport 20.2 1.4E+02 0.0048 19.5 4.0 29 130-158 25-53 (105)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=7.5e-39 Score=240.25 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-e-cCcccccCccccccccccCCeEEEEEE-ecCCe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~-~g~~l~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 77 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++++.++ +++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++++.||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988773
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=3.2e-38 Score=236.83 Aligned_cols=154 Identities=35% Similarity=0.530 Sum_probs=147.1
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-e-cCcccCCCCchhhcccccCCceEEEEE-eecc
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 152 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~tL~~~~i~~~~~i~l~~~-~~~~ 152 (230)
.|+|+|++.+|+.+.+++++++||++||++|++..|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++.+ ++++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 378999999999999999999999999999999999999999999 9 799999999999999999999999999 5899
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.++++..+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=239.55 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++|.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++++|++|++++++.||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=236.85 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.++++..+|+++.+++++++||.+||++|+.+.|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=7.9e-37 Score=227.59 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++..+..+.|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.++.||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=4.1e-36 Score=223.72 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.0
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecceeEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|++.+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++++++.+..+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1e-21 Score=138.22 Aligned_cols=101 Identities=74% Similarity=0.991 Sum_probs=94.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
.+|+|+.+.|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..++.+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EE---ecCCcEEeeccCCcCcHHH
Q 026932 81 VK---TLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 81 v~---~~~g~~~~~~v~~~~tV~~ 101 (230)
++ ...|+++.+++.+++||.+
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4568889999998888753
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=122.79 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.++|+++++++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998763
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=3.6e-20 Score=123.15 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+...|+++.++++|++||.+||++|+++.|+|+++|+|.|+|+.|+|+.||++|+|.++++++|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=2.8e-20 Score=123.75 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc-cccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~-l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+++.|+++++++++++||.+||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|.+++++++.++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.82 E-value=4.9e-20 Score=123.89 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=72.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998876553
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.81 E-value=1e-19 Score=124.96 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|+..+|+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred EEecCCcEEee
Q 026932 81 VKTLTGKTITL 91 (230)
Q Consensus 81 v~~~~g~~~~~ 91 (230)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88877755433
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=119.29 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.4
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
+.|.++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999886
No 14
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.9e-21 Score=134.34 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=96.3
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+.++|+++..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.++.+|.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE---eecCceEEEEeeccchHHH
Q 026932 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (230)
Q Consensus 154 ~i~v~---~~~~~~~~~~v~~~~tV~~ 177 (230)
.++++ ...|+++.+++.+++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 88877 4468889999999888864
No 15
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=9.1e-20 Score=122.71 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.5
Q ss_pred ccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhccccc
Q 026932 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~ 139 (230)
|..+++.+++.++.+..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+ +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456678889988888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCceEEEEE
Q 026932 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999864
No 16
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.3e-19 Score=121.88 Aligned_cols=77 Identities=57% Similarity=0.968 Sum_probs=72.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.++|++.+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999995
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=121.05 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.7
Q ss_pred ccccCCceEEEEEeecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCC
Q 026932 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~ 215 (230)
|+.+++.++++++.+..|.++|+..+|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788888988888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEE
Q 026932 216 ESTLHLVLR 224 (230)
Q Consensus 216 g~~i~l~~~ 224 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999875
No 18
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.7e-20 Score=121.63 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceeEEecCcccccCcccccccc-ccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~~ 74 (230)
|+|+||++.|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999998766 999999999999 9999999999999999999999999999999 6999999998774
No 19
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.7e-19 Score=121.23 Aligned_cols=80 Identities=85% Similarity=1.267 Sum_probs=70.1
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.||.++++..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|+.||++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999964
No 20
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.8e-19 Score=119.80 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=70.2
Q ss_pred EEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
+....+.|+|+|++..|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|+++++.
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999886
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=3.4e-19 Score=116.45 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=71.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887643
No 22
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=3.1e-19 Score=120.79 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=70.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998764
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.4e-19 Score=117.12 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.2
Q ss_pred CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++ +++ +++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999998875
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=2e-19 Score=122.03 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+||++.|+++.+++.|++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++++|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.79 E-value=6.2e-19 Score=115.18 Aligned_cols=75 Identities=95% Similarity=1.308 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.6e-19 Score=119.12 Aligned_cols=75 Identities=87% Similarity=1.259 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887654
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=4.5e-19 Score=119.80 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+||.++|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++...
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999987643
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=119.67 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++..|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+..+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999887643
No 29
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=3.4e-19 Score=119.84 Aligned_cols=75 Identities=57% Similarity=0.958 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887643
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5e-19 Score=121.35 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987653
No 31
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.78 E-value=6.1e-19 Score=115.22 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=71.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|+.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998889999999999999999999999999999999999999999999999999999999999999999998
No 32
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=4e-19 Score=119.52 Aligned_cols=78 Identities=58% Similarity=0.980 Sum_probs=75.2
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 33
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=5.6e-19 Score=118.01 Aligned_cols=75 Identities=80% Similarity=1.153 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988653
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=8.1e-19 Score=119.97 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeee
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
|+|+|+..+|+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988766543
No 35
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=7.6e-19 Score=120.11 Aligned_cols=78 Identities=94% Similarity=1.273 Sum_probs=73.4
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999985
No 36
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.8e-19 Score=117.59 Aligned_cols=78 Identities=79% Similarity=1.159 Sum_probs=72.1
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+..+++++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|+.||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 478899998999999999999999999999999999999999999999999999999999999999999999999984
No 37
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=1.1e-18 Score=113.95 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.2
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++..|+.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998889999999999999999999999999999999999999999999999999999999999999999998
No 38
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=7e-19 Score=115.90 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.1
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|++.+|+++.+++++++||.+||++++++.|+|++.|+|+|+|+.|+|++||++|++++|++|++++++.||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998
No 39
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.3e-19 Score=120.54 Aligned_cols=78 Identities=95% Similarity=1.288 Sum_probs=74.7
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 348899999999999999999999999999999999999999999999999999999999999999999999999998
No 40
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.77 E-value=9.1e-19 Score=120.13 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.1
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecceeEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.+..+|..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCceEEE
Q 026932 157 VKTLTGKTITL 167 (230)
Q Consensus 157 v~~~~~~~~~~ 167 (230)
.++.+++.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88877655433
No 41
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=116.45 Aligned_cols=79 Identities=34% Similarity=0.534 Sum_probs=75.8
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|.++|+..+++++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|+|++|++|++.+|+.||.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4688999988899999999999999999999999999999999999999999999999999999999999999999985
No 42
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=116.56 Aligned_cols=75 Identities=92% Similarity=1.241 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987643
No 43
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=6.6e-19 Score=116.02 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|++.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 44
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=117.18 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=72.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++..|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887543
No 45
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.77 E-value=1.1e-18 Score=121.14 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=71.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCcccccccccc-------CCeEEEEEE
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~-------~~~i~l~~~ 72 (230)
|.||++...++ ++++++.+++||.+||++|+...|||+++|+|+|+|+.|+|++||++|||.+ ++++||.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999888 8899999999999999999999999999999999999999999999999999 999999988
Q ss_pred ec
Q 026932 73 LR 74 (230)
Q Consensus 73 ~~ 74 (230)
..
T Consensus 81 ~~ 82 (118)
T 4ajy_B 81 AD 82 (118)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 46
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=8.4e-19 Score=117.87 Aligned_cols=79 Identities=35% Similarity=0.564 Sum_probs=71.3
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+...|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++..++.||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4588999998899999999999999999999999999999999999999999999999999999999999999999984
No 47
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.6e-18 Score=115.70 Aligned_cols=78 Identities=91% Similarity=1.244 Sum_probs=74.4
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+...++++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999984
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=114.81 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 49
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.5e-18 Score=117.91 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC-ccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|+++.| +++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++++.+++.++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999887543
No 50
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.2e-18 Score=116.68 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+.+++++++||.+||.+|+.. +|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998754
No 51
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=116.31 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.0
Q ss_pred CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++..| +++.+ ++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7999999999 79999 5999999999999999999999999999999999999999999999999999999887544
No 52
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.7e-19 Score=121.73 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+||+++|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998653
No 53
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.76 E-value=2.5e-18 Score=114.81 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999987653
No 54
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.76 E-value=2.2e-18 Score=120.66 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987653
No 55
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.4e-18 Score=116.82 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=73.9
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+...+ ++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|++|+.||+
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 457889998777 899999999999999999999999999999999999999999 999999999999999999999986
No 56
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.2e-18 Score=114.60 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.0
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcc-cCCCCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|+|+++..+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+. |+|+.+|++||+.+|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 458999999999999999999999999999999999999999999999999 99999999999999999998865
No 57
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.76 E-value=1.9e-18 Score=118.19 Aligned_cols=78 Identities=18% Similarity=0.417 Sum_probs=75.2
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.|+|++..|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 58
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.76 E-value=3.4e-18 Score=128.35 Aligned_cols=124 Identities=65% Similarity=0.873 Sum_probs=93.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++..++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred EEec-CC--cEEeeccCCcCcHHHHHHHHHhHhCCC-CCCeEEEecCcccCC
Q 026932 81 VKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED 128 (230)
Q Consensus 81 v~~~-~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d 128 (230)
|+.. .| ..-.+.+.++.++.+-.+. ..+. .+..++.|.-+.|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~----~~i~~~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETS----IKLEMDQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGC----BEEEESSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccc----eEEecCCcceEEEhHHHHHH
Confidence 5433 12 2245556555554321111 1111 133566666666654
No 59
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.76 E-value=2e-18 Score=117.50 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.1
Q ss_pred CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceeEEecCcccccCcccccccc-ccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||++.|+.|++ ++++++||.+||++| +...|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++.++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 9999999999999999999999999999999 999999998753
No 60
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=120.86 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.0
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458899998889999999999999999999999999999999999999999999999999999999999999999998
No 61
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=4.1e-18 Score=119.30 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=73.8
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.|.++|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998
No 62
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=2.1e-18 Score=118.00 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+++.|+++.++|.+++||.+||.+|++..|||+++|+|+|+|+.|+|+.||++|+|.++++|++.++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.75 E-value=2.2e-18 Score=120.14 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=68.7
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccc-------cCCeEEEEEE
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|+++|+...|+ +++++|.+++||.+||++|+..+|||+++|+|+|+|+.|+|+.||++|||. .++++|+.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 699999999999999999999999999999999999999999999999999 6899999877
No 64
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6e-18 Score=113.96 Aligned_cols=79 Identities=37% Similarity=0.626 Sum_probs=74.6
Q ss_pred cceeEEEEeecC-ceEEE-EeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~-~~~~~-~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+...| +++.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|+.||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 458899998888 68999 5999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 026932 229 G 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 5
No 65
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=4.3e-18 Score=111.49 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999987653
No 66
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=116.43 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+. |+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999998 899999999999999999999999999999999999999999999999999999999999987653
No 67
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.61 E-value=7.2e-20 Score=119.76 Aligned_cols=74 Identities=34% Similarity=0.600 Sum_probs=71.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 68
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=116.77 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=71.4
Q ss_pred ecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...|.++|+. |+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3457888887 7899999999999999999999999999999999999999999999999999999999999999998
No 69
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.75 E-value=1.5e-18 Score=131.58 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=78.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred EE
Q 026932 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 64
No 70
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=7.4e-18 Score=113.98 Aligned_cols=76 Identities=91% Similarity=1.259 Sum_probs=72.3
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 226 (230)
..|.++|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999998864
No 71
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1e-17 Score=109.95 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=70.6
Q ss_pred cceeEEEEeecCceE-EEE-eeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 151 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~~~-v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
++|.++|+..+|+++ .++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468899999989885 999 999999999999999999999999999999999999999999999999999999875
No 72
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.9e-18 Score=112.75 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.5
Q ss_pred eeeEEEecCCcEEeeccC--CcCcHHHHHHHH-HhHhCCCCCCeEEEecCcccCCCCchhhccc-ccCCceEEEEEe
Q 026932 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~ 149 (230)
|+|+|++.+|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 789999999999988855 999999999999 9999999999999999999999999999999 799999988765
No 73
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.4e-17 Score=112.35 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.4
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+..+|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+| +|++|+++++..++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 357899999999999999999999999999999999999999999999999999999999999 89999999998765
No 74
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=9.3e-18 Score=116.97 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=69.6
Q ss_pred eeEEEEeecCc-eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026932 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~-------~g~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||+ ++++|++.+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45566666665 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCC
Q 026932 225 LRGGGF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
.||.|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 77765
No 75
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=5.7e-18 Score=114.84 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=68.5
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.|+|+|++..|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999876
No 76
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.73 E-value=1.5e-17 Score=124.76 Aligned_cols=83 Identities=90% Similarity=1.200 Sum_probs=75.9
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecceeEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|++++|++|++++++.+|....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999886555
Q ss_pred EEe
Q 026932 157 VKT 159 (230)
Q Consensus 157 v~~ 159 (230)
++.
T Consensus 81 vkf 83 (169)
T 3l0w_B 81 IKF 83 (169)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 77
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.5e-18 Score=116.80 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++|+..+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987653
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1e-17 Score=113.70 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=69.8
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceeEEecCcccccCcccccc--ccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~~~~~ 74 (230)
|+|+||+.+|+ ++++++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|.+++++|+++++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999998 67777889999999999999999 9999999999999999999999999 999999999988764
Q ss_pred C
Q 026932 75 G 75 (230)
Q Consensus 75 ~ 75 (230)
+
T Consensus 88 g 88 (93)
T 1wgd_A 88 S 88 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.4e-18 Score=117.42 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceeEEecCcccc-cCccccccccccC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~l~~~g~~l~-d~~~l~~~~i~~~ 64 (230)
|+|+|++++|++++++|.+++||.+||++|++.+|+|+. +|+|.|+|+.|. |+.+|++|||.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6699999999999
Q ss_pred CeEEEEEEecCC
Q 026932 65 STLHLVLRLRGG 76 (230)
Q Consensus 65 ~~i~l~~~~~~~ 76 (230)
+++|++.+..+.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999877543
No 80
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=2e-17 Score=114.72 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=69.2
Q ss_pred eeEEEEeecCc-eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026932 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~-------g~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||++ +++|+|.+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 34566655555 7899999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 026932 225 LRGGGF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
. +|.|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6654
No 81
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=109.27 Aligned_cols=75 Identities=40% Similarity=0.703 Sum_probs=71.2
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998764
No 82
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.3e-17 Score=113.18 Aligned_cols=79 Identities=29% Similarity=0.487 Sum_probs=72.5
Q ss_pred cceeEEEEeecCc--eEEEEeeccchHHHHHHHhchhh--CCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEEEE
Q 026932 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~--~i~~~~~~l~~~g~~L~d~~tL~~~--~i~~g~~i~l~~~ 224 (230)
..|.++|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3478889988887 56677779999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 026932 225 LRGGG 229 (230)
Q Consensus 225 ~~~g~ 229 (230)
++||+
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99986
No 83
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=115.53 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 84
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.3e-17 Score=114.47 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+...|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999886 799999999999999999999999999999999999999999999999999999999987644
No 85
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.2e-18 Score=117.11 Aligned_cols=92 Identities=32% Similarity=0.524 Sum_probs=67.3
Q ss_pred ccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchh
Q 026932 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~ 133 (230)
...++|.|.. +.++.......+.|+|+. +|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 4567888864 445555555667888887 8899999999999999999999999999999999999999999999999
Q ss_pred hcccccCCceEEEEE
Q 026932 134 DYNIQKESTLHLVLR 148 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~ 148 (230)
+|||++|++|+++.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999988754
No 86
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=113.66 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 89999999999999999999999999999999999999999999999999999999999987764
No 87
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.6e-17 Score=111.55 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred EEEEeec----CceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 155 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 155 i~v~~~~----~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|+..+ ++.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 4444444 6789999999999999999999999999999999999999999999999999999999 777777753
No 88
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.71 E-value=3.3e-17 Score=109.36 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=70.9
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhH---hCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+..|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.+.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 78999999999999999999999999999999999987654
No 89
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.7e-17 Score=111.48 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=60.5
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
++.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++| +++++.+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 6789999999999999999999999999999999999999999999999999999999 5555543
No 90
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.9e-17 Score=110.72 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=70.7
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhH---hCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|+..+|+.+.++|++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 789999999999999999999999999999999999886543
No 91
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=115.77 Aligned_cols=80 Identities=33% Similarity=0.455 Sum_probs=75.2
Q ss_pred ecceeEEEEee---cCceEEEEeec-cchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~---~~~~~~~~v~~-~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
++.+.++|+.. +|+.+.+++++ ++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35678888887 78899999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026932 226 RGGG 229 (230)
Q Consensus 226 ~~g~ 229 (230)
+||.
T Consensus 105 ~GGk 108 (111)
T 1we6_A 105 RSGP 108 (111)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9995
No 92
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1e-17 Score=114.48 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+++.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999877643
No 93
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.71 E-value=2.5e-17 Score=112.15 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=69.8
Q ss_pred cCCeeeEEEecCCcEEee--ccCCcCcHHHHHHHH-HhHhCCCCCCeEEEecCcccCCCCchhhccc-ccCCceEEEEEe
Q 026932 74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~ 149 (230)
...|+|+|++.+|+.+.+ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 457999999999998777 566999999999999 8888999999999999999999999999999 999999998765
Q ss_pred e
Q 026932 150 R 150 (230)
Q Consensus 150 ~ 150 (230)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.5e-17 Score=115.37 Aligned_cols=75 Identities=32% Similarity=0.445 Sum_probs=71.2
Q ss_pred CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+++ +|+++.+++++ ++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERS 106 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCC
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 68999998 89999999998 99999999999999999999999999999999999999999999999999987654
No 95
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.1e-17 Score=114.69 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=70.0
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987543
No 96
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.70 E-value=1.7e-17 Score=125.79 Aligned_cols=84 Identities=90% Similarity=1.211 Sum_probs=80.1
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeeccee
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
-.|+|+|++.+|+++.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++.+|..
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEE
Q 026932 155 IFVK 158 (230)
Q Consensus 155 i~v~ 158 (230)
++++
T Consensus 184 ~fvk 187 (189)
T 3q3f_A 184 TFTK 187 (189)
T ss_dssp CCCC
T ss_pred ceEe
Confidence 7665
No 97
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=5.8e-17 Score=113.27 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceeEEecCcccccCccccccccccC--CeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~l~~~g~~l~d~~~l~~~~i~~~--~~i~l~ 70 (230)
|.|+|+++.|++++++|++++||.+||++|++ ..|+ |+++|+|+|.|+.|+|+.||++|+|..+ +++|++
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 6675 6999999999999999999999999766 578888
Q ss_pred EEec
Q 026932 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7764
No 98
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.6e-17 Score=115.67 Aligned_cols=74 Identities=31% Similarity=0.405 Sum_probs=69.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999887643
No 99
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.70 E-value=1.1e-18 Score=125.33 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++.+|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998876443
No 100
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.70 E-value=6.8e-17 Score=110.41 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.4
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCcccccccc-ccCCeEEEEEE
Q 026932 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~ 72 (230)
|+|+|+...+ .+++++|.|++||.+||++|++.+||||++|||+++|+.++|+.||++||| .+|+++||.+.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999875 799999999999999999999999999999999999999999999999999 59999999864
No 101
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.8e-17 Score=112.61 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+...|+ +.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999886 799999999999999999999999999999999999999999999999999999999887643
No 102
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-17 Score=114.30 Aligned_cols=93 Identities=31% Similarity=0.514 Sum_probs=66.5
Q ss_pred CCchhhcccccCCceEEEEEeecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcc
Q 026932 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 129 ~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL 208 (230)
..++++|.|.. +.++..+....+.++++. +|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 35678888764 444444444446677776 888999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEE
Q 026932 209 ADYNIQKESTLHLVLR 224 (230)
Q Consensus 209 ~~~~i~~g~~i~l~~~ 224 (230)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998764
No 103
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=8.5e-17 Score=110.42 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=72.1
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+...++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.++.+|
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 4478889888775 7999999999999999999999999999999999999999999999999999999999998886
No 104
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.6e-16 Score=103.91 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.3
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
|.++++. +|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7788888 88999999999999999999999999999999999999999999999999999999999998764
No 105
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.69 E-value=1.1e-16 Score=112.70 Aligned_cols=69 Identities=29% Similarity=0.603 Sum_probs=66.7
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999995
No 106
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.51 E-value=2e-18 Score=112.81 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=71.7
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
|+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 568888888999999999999999999999999999999999999999999999999999999999999999886
No 107
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.6e-17 Score=112.30 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=68.6
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC-ccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+...| ++++++|++++||.+||++|+..+|||+++|+|+|+|+.|+|+ .+|++|+|.+++++++..+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7999999999999999999999999999999999999999988 799999999999999987654
No 108
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=3.9e-17 Score=111.49 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=72.9
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+.. ++.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|+|++|++|+++.++.||.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 477888877 88999999999999999999999999999999999999999999999999999999999999999884
No 109
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.68 E-value=2.7e-18 Score=126.13 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988754
No 110
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=113.37 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=67.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceeEEecCcccccCccccccccccCC--eEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~l~~~g~~l~d~~~l~~~~i~~~~--~i~l~ 70 (230)
|.|+|+++.|+++++++++++||.+||++|++ ..|+| +++|+|+|+|+.|+|+.||++|+|..++ ++|++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 77885 8999999999999999999999999766 67888
Q ss_pred EEec
Q 026932 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7764
No 111
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=112.81 Aligned_cols=77 Identities=30% Similarity=0.373 Sum_probs=68.8
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.|+|+.. ++.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+|+.+..||.
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 477888877 88999999999999999999999999999999999999999999999999999999999999999884
No 112
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=112.02 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=68.8
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceeEEecCcccccCccccccccccC------Ce
Q 026932 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gi~~--~~q~l~~~g~~l~d~~~l~~~~i~~~------~~ 66 (230)
|+|+|++.+|+.+ ++++++++||.+||++| ++..|+|+ ++|+|+|+|+.|+|+.||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 67789997 89999999999999999999999988 67
Q ss_pred EEEEEEecC
Q 026932 67 LHLVLRLRG 75 (230)
Q Consensus 67 i~l~~~~~~ 75 (230)
+|+++++..
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 898888754
No 113
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=109.45 Aligned_cols=80 Identities=30% Similarity=0.367 Sum_probs=72.2
Q ss_pred EEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
......|+|+|+.. |+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.+++
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 33456799999988 88899999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 026932 151 G 151 (230)
Q Consensus 151 ~ 151 (230)
+
T Consensus 99 ~ 99 (101)
T 2klc_A 99 N 99 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=4e-17 Score=112.09 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=70.9
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC---------------CCeEEEecCcccC-CCCchhhccccc
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---------------~~q~L~~~g~~L~-d~~tL~~~~i~~ 139 (230)
.|+|+|+..+|+.+.++|++++||++||++|+++.++|+ +.|+|+|+|+.|. |+.+|++|||.+
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 499999999999999999999999999999999999887 4579999999996 679999999999
Q ss_pred CCceEEEEEeecc
Q 026932 140 ESTLHLVLRLRGG 152 (230)
Q Consensus 140 ~~~i~l~~~~~~~ 152 (230)
|++|+++.++.+.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999987654
No 115
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=110.00 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=73.8
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+..+|+.+.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+...++
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4588999988899999999999999999999999999999999999999999999999999999999999999876553
No 116
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.7e-16 Score=105.76 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.1
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+++.++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++...
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4677889999999999999999999999999999999999999999999999999999999999998754
No 117
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.67 E-value=8.7e-17 Score=108.33 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.2
Q ss_pred CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. .|+++.+ ++++++||.+||++|++.+|||+++|+|+ |+|+.|+|+.+|++|+|.++++++|+..+
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 7999999 99999999999999999999999999999 99999999999999999999999998654
No 118
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=109.84 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=64.5
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceeEEecCcccccCcccccc--ccccCCeEEEE
Q 026932 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gi~~-~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~ 70 (230)
|+|+||+++|+ ++++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 6799999999999999999996 57665 999999999999999999999 99999999873
No 119
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=8.6e-17 Score=109.51 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=66.7
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+ ..|+++ .+++++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|+|.++++++++...
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 689999 478999 6999999999999999999999999999999999999999 9999999999999997654
No 120
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.66 E-value=5.6e-18 Score=121.69 Aligned_cols=77 Identities=96% Similarity=1.296 Sum_probs=0.5
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++++.||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 56888988999999999999999999999999999999999999999999999999999999999999999999985
No 121
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.9e-16 Score=109.06 Aligned_cols=76 Identities=34% Similarity=0.454 Sum_probs=71.2
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.|.++|+...++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+|+.++.+|
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 377888877775 7899999999999999999999999999999999999999999999999999999999999887
No 122
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.66 E-value=5.7e-18 Score=124.37 Aligned_cols=77 Identities=97% Similarity=1.344 Sum_probs=0.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+|+|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|+.||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 56888988899999999999999999999999999999999999999999999999999999999999999999996
No 123
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=108.89 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.++++.+.|+++++++++++||.+||++|++.+||||++|+|++ .+..|+|+.+|++|+|.+++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 677888999999999999999999999999999999999999985 4444999999999999999999998765
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2e-16 Score=109.03 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=71.1
Q ss_pred ceeEEEEeecC----ceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEec
Q 026932 152 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~~ 226 (230)
.|.++|+...+ +.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|..+.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 46778877543 6899999999999999999999999999999999999999877 799999999999999999999
Q ss_pred CCC
Q 026932 227 GGG 229 (230)
Q Consensus 227 ~g~ 229 (230)
||.
T Consensus 87 gg~ 89 (102)
T 1v5o_A 87 VGL 89 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 884
No 125
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=9e-16 Score=108.17 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=70.8
Q ss_pred cceeEEEEeecCceE-EEEeeccchHHHHHHHh-----chhhCCCC--CceEEEECCeecCCCCcccccCCCCC------
Q 026932 151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ 216 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~~~v~~~~tV~~LK~~i-----~~~~~i~~--~~~~l~~~g~~L~d~~tL~~~~i~~g------ 216 (230)
.-+.++++..+|+.+ ++++++++||.+||++| ++..|+|+ ++|+|+|.|+.|+|++||++|+|++|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 347889999999888 79999999999999999 45557886 79999999999999999999999998
Q ss_pred CEEEEEEEecCCC
Q 026932 217 STLHLVLRLRGGG 229 (230)
Q Consensus 217 ~~i~l~~~~~~g~ 229 (230)
++++|++++.||.
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 7899999999874
No 126
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5e-16 Score=108.54 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=68.5
Q ss_pred ecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHh------HhCC--CCCCeEEEecCcccCCCCchhhcccccC--Cc
Q 026932 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--ST 142 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~tL~~~~i~~~--~~ 142 (230)
+...|.|+|++..|+++.++|++++||++||++|++ +.++ |+++|+|+|.|+.|+|+.||++|+|..+ .+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345699999999999999999999999999999999 4464 6999999999999999999999999876 46
Q ss_pred eEEEEEee
Q 026932 143 LHLVLRLR 150 (230)
Q Consensus 143 i~l~~~~~ 150 (230)
+||++++.
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 77777654
No 127
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.64 E-value=6.4e-16 Score=108.84 Aligned_cols=68 Identities=29% Similarity=0.620 Sum_probs=65.2
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++|++++++.+|
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999998876
No 128
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=5.8e-16 Score=105.41 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccC-ccccccccccCCeEEEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+...|+.+.++|++++||.+||.+|+..+ +++|+|+|+|+.|+|+ .+|++|+|.++++||++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8899999999999999 999999999999999987653
No 129
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=4.4e-16 Score=108.22 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eeEEecCcccccCccccccccccCC
Q 026932 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gi~~~~-q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+||..+| +.+.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 899999554 599999999999999 999999 9999999999999999999999999
Q ss_pred eEEEEEEec
Q 026932 66 TLHLVLRLR 74 (230)
Q Consensus 66 ~i~l~~~~~ 74 (230)
++|++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999987653
No 130
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=2.7e-16 Score=106.92 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=64.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|+ ..|+++.+++++++||.+||++|+..+|||+++|+|+|+|+.|+| .+|++|+|.++++|+++..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 678898 579999999999999999999999999999999999999999954 5999999999999998754
No 131
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=7.2e-16 Score=104.31 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.6
Q ss_pred CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceeEEecCccccc-CccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d-~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. .|+.+.++++++ +||.+||++|+..+|+|+++|+|+|+|+.|.| +.+|++|+|.+++++++....
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899998 588999999996 99999999999999999999999999999998 568999999999999998654
No 132
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.9e-16 Score=103.88 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.5
Q ss_pred CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceeEEec--CcccccCccccccccccCCeEEE
Q 026932 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~l~~~--g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+++.|+.+ ++ +|+|++||.+||++|++. .|+||++|+|.|. |+.|+|+.+|++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988765 58 999999999999999995 8999999999976 89999999999999999998775
No 133
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.9e-15 Score=101.77 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=68.3
Q ss_pred CCeeeEEEecCCcEEee-ccCCcCcHHHHHHHHHhHhCCCCCCeEEE---ecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 458899985 7899999 99999999999999999999999999999 99999999999999999999999887543
No 134
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.62 E-value=1.7e-15 Score=103.46 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=66.7
Q ss_pred CeeeEEEecCC--cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhccc-ccCCceEEEEE
Q 026932 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~ 148 (230)
.|.++|+...+ ..+++++++++||++||++|++++|+|++.|||+++|+.++|+.||.+||| ++|+++++++.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 36788887764 789999999999999999999999999999999999999999999999999 59999999864
No 135
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.61 E-value=2.1e-15 Score=100.42 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.8
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..++..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455678899999999999999999999999999999999999999999999999999999999998754
No 136
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.6e-15 Score=102.66 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=61.8
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC--c---c-cccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--K---Q-LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g--~---~-l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+.|+|+...+ +.+++++++++||.+||++|+..+||||++|+|+|.| + . ++|+.+|++|+|.++++|++.
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 3577887655 4899999999999999999999999999999999973 3 3 488999999999999999985
No 137
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=103.56 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=69.8
Q ss_pred eeeEEE-ecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 77 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 77 ~~v~v~-~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+.+.|+ ..+++.+.++++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||.+||+++|.+|||+++...+
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 556666 5678899999999999999999999999999999999999999999999999999999999999886544
No 138
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.61 E-value=8.2e-16 Score=104.87 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCeeeEEEecCCc--EEeeccCCcCcHHHHHHHHHhHh-CCC-CCCeEEEecCcccCCCCchhhc--ccccCCceEEE
Q 026932 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~-~i~-~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~ 146 (230)
..|.|+|++.+++ .+.+++++++||.+||++|+++. |.| +++|+|+|+|+.|+|+.+|++| +|.++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4689999999887 67889999999999999999974 555 5999999999999999999999 99999999874
No 139
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=104.35 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=68.6
Q ss_pred EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
.|.|+ ..+|..++++++++.||.+||.++...+++|+++|+|.|+|+.|.|+.||.+|||.++.++||.+...+.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 35555 5578899999999999999999999999999999999999999999999999999999999999877544
No 140
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=107.13 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=69.1
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhch------hhCC--CCCceEEEECCeecCCCCcccccCCCCCC--EEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~------~~~i--~~~~~~l~~~g~~L~d~~tL~~~~i~~g~--~i~l~ 222 (230)
|.+++++..|+++++++++++||.+||++|++ +.|+ ++++|+|+|.|+.|+|++||++|+|+.|+ +++|+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67888888899999999999999999999999 5577 48899999999999999999999999776 78899
Q ss_pred EEecCCC
Q 026932 223 LRLRGGG 229 (230)
Q Consensus 223 ~~~~~g~ 229 (230)
+|+.+++
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 9887653
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.7e-15 Score=103.57 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=69.1
Q ss_pred CCeeeEEEecCC---cEEeeccC--------C-cCcHHHHHHHHHhHh--CCCCCC-eEEEecCcccCCCCchhhccccc
Q 026932 75 GGMQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g---~~~~~~v~--------~-~~tV~~lK~~i~~~~--~i~~~~-q~L~~~g~~L~d~~tL~~~~i~~ 139 (230)
..|+|+|+..++ +.+.++++ + ++||.+||++|++.. ++|+++ |+|+|+|+.|+|+.+|++|++++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458899999888 78899955 4 499999999999999 999999 99999999999999999999999
Q ss_pred CCceEEEEEee
Q 026932 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
+++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999987654
No 142
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.59 E-value=9.3e-17 Score=120.97 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|+.|+|+.+|+ ++++|||++++.++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 88999999887544
No 143
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.59 E-value=3.3e-15 Score=99.29 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=62.2
Q ss_pred EEEEE--ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-------cCcccccCccccccccccCCeEEEEEE
Q 026932 2 QIFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~--~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-------~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|.|. ...++.+...+++++||.+||++|+..+||||++|+|.| .|+.++|+.+|++|+|.+|+++|++-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 34554 345567899999999999999999999999999999996 478899999999999999999999753
No 144
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.58 E-value=4.2e-15 Score=120.52 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+++.|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 145
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=1e-14 Score=98.54 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=74.8
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.+.+.|+..+|+.+.+++.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++++|++|+++.++.||++
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999953
No 146
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=7.7e-15 Score=99.58 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc---c----cccCccccccccccCCeEEEEE
Q 026932 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~---~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+.... ..+++++++++||.+||++|+..+||||++|+|+|.|+ . ++|+.+|++|+|.++++|+++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467776444 58999999999999999999999999999999999873 2 5889999999999999999863
No 147
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=6.6e-15 Score=100.15 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=65.2
Q ss_pred eeEEEEeecCceE-EEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 153 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~-~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
|.++|+ ..++.+ .+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+...
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 667888 468889 6999999999999999999999999999999999999999 9999999999999987643
No 148
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=9.2e-15 Score=98.83 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=66.6
Q ss_pred CCeeeEEEecCCcEEeeccCCc-----CcHHHHHHHHHhHhCCCCCCeEEEecCcccCC-CCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|+|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|++.+|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 358889987 578899999985 99999999999999999999999999999998 66899999999999988765
Q ss_pred e
Q 026932 149 L 149 (230)
Q Consensus 149 ~ 149 (230)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 149
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1.5e-14 Score=98.43 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=68.2
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEecC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
..|.++|+...|+.+.+++++++||.+||++|+... +++|+|+|+|+.|+|+ ++|++|+|++|++|+++.+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 357889998889999999999999999999999997 8999999999999998 9999999999999999987544
No 150
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.5e-14 Score=97.87 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred cCCeeeEEEecCC--cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEec--Cc---cc-CCCCchhhcccccCCceEE
Q 026932 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 74 ~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~---~L-~d~~tL~~~~i~~~~~i~l 145 (230)
...+.|+|+...+ +.+++++++++||++||++|+..+|+|++.|+|+|. |+ .| +|+++|++|+|++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3446777776655 478999999999999999999999999999999997 44 34 8999999999999999988
Q ss_pred E
Q 026932 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 151
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=6.8e-15 Score=99.93 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=64.9
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|+|+|+ .+++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|+++++|+|+..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 35788887 578899999999999999999999999999999999999999954 5999999999999988754
No 152
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=8.2e-15 Score=101.73 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.6
Q ss_pred CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEecCc-----------c----cccCccccccccccC
Q 026932 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-----------~----l~d~~~l~~~~i~~~ 64 (230)
|.|+|++.+|.. .++|+ +++||.+||++|+..+|||+++|+|++.|+ . ++|+.+|++|||.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 79999 999999999999999999999999998887 4 578899999999999
Q ss_pred CeEEEEEEe
Q 026932 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999987543
No 153
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=4.8e-14 Score=94.49 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=74.7
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.+.+.|++.+|+.+.+.+.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++++|++|.++.++.||+.
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999963
No 154
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=99.16 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=65.4
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhcccccCCceEEEEEe
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.|.+++...+|+.+.+++++++||++||++|++++|||+++|+|++ .+..|+|+.+|++|+|++|++++++++.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 4666677789999999999999999999999999999999999985 4334999999999999999999987654
No 155
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.53 E-value=1.6e-14 Score=95.91 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=59.8
Q ss_pred cCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-------cCcccCCCCchhhcccccCCceEEEEEe
Q 026932 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.+.++..+++++||.+||++|+..+|+|++.|+|+| .|+.++|+++|++|||++|++|||+-+.
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 34566789999999999999999999999999999996 4788999999999999999999998643
No 156
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=97.23 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred CeeeEEEecCCcEE--ee-ccCCcCcHHHHHHHHHhH-hCCCCCCeEEEec--CcccCCCCchhhcccccCCceEE
Q 026932 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~~i~~~~q~L~~~--g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.|.|+|++..|+.+ .+ +|++++||.+||++|++. .++|+++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48899999988775 47 899999999999999995 7999999999976 89999999999999999998765
No 157
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=2.9e-14 Score=96.86 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.0
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---cc----cccCccccccccccCCeEEEEE
Q 026932 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+..... .+++++++++||.+||++|+..+|||+++|+|+|.| +. ++|+.+|++|||.+++++|+.-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5667765443 789999999999999999999999999999999986 32 5889999999999999998863
No 158
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.51 E-value=2.2e-14 Score=119.52 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=69.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceeEEecCcccccCccccccccccCCeE-EEEEEec
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i-~l~~~~~ 74 (230)
|+|+||++.|+++.++|++++||.+||.+|+. .+|||+++|+|+|+|+.|+|+.+|++|+|.++++| +++.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 6665553
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=6.3e-14 Score=95.07 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=61.9
Q ss_pred CeeeEEEecCC--cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCc---c----cCCCCchhhcccccCCceEEE
Q 026932 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~----L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+.+.|..... ..+++++++++||++||++|+.++|+|++.|+|+|.|+ . ++|+++|++|+|.+|++|+++
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 35666665443 47899999999999999999999999999999999873 3 489999999999999999886
Q ss_pred E
Q 026932 147 L 147 (230)
Q Consensus 147 ~ 147 (230)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 160
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.50 E-value=1.6e-15 Score=114.24 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=0.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+|+|++.+|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.||+ ++++|+|++|++||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 999999999999985
No 161
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.50 E-value=5.8e-14 Score=113.84 Aligned_cols=76 Identities=93% Similarity=1.274 Sum_probs=71.5
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
...|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999998765
No 162
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.48 E-value=1.1e-13 Score=98.22 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=62.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---c----ccccCccccccccccCCeEEEEE
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K----QLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~----~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.|+|+...+. .+++++++++||.+||.+|+..+|||+++|+|+|.| + .++|+.+|++|||.++++||+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 35677765553 789999999999999999999999999999999987 3 24789999999999999999975
No 163
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.47 E-value=2e-13 Score=92.01 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=70.3
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.+.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++++|++|+++.++.||
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 36677887888899999999999999999999999999999999999999999999999999999999999999998
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=9.6e-14 Score=93.72 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=75.0
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|+|.|+..+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++.++.+|.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999988873
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.45 E-value=1.2e-13 Score=115.16 Aligned_cols=77 Identities=30% Similarity=0.550 Sum_probs=70.1
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHh---HhCCCCCCeEEEecCcccCCCCchhhcccccCCce-EEEEEee
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 150 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i-~l~~~~~ 150 (230)
..|+|+|+..+|+.+.++|++++||.+||.+|++ +.|+|+++|+|+|+|+.|+|+++|++|+|+++++| +++.+..
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4689999999999999999999999999999999 56799999999999999999999999999999999 5555554
Q ss_pred c
Q 026932 151 G 151 (230)
Q Consensus 151 ~ 151 (230)
+
T Consensus 86 ~ 86 (368)
T 1oqy_A 86 A 86 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 166
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.45 E-value=9.8e-14 Score=92.49 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.0
Q ss_pred CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEec--Ccccc---cCccccccccccCCeEEEEEE
Q 026932 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~~l~---d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|++.+|+.. ++ +++++||.+||++|++.+|||+++|+|.++ ++.++ ++.+|++|||.+++++++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999654 77 999999999999999999999999999986 46764 678999999999999888643
No 167
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.4e-13 Score=93.23 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=73.8
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.|.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++++|++|+++.++.||+
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 366778888889999999999999999999999999999999999999999999999999999999999999999996
No 168
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=2.7e-13 Score=92.01 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.3
Q ss_pred eeeEEEecCCc-EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecC---cc----cCCCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.|.|+..+.. .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+.+|.+||+.+|++|++.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56667665443 688999999999999999999999999999999986 43 5899999999999999998864
No 169
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.42 E-value=6.8e-13 Score=91.04 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=69.7
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.|.|+. +|+.+.+.+.+++++..|+++++++.|++++.++|+|+|+.|.++.|.++|++++|++|.++.++.||
T Consensus 31 ~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 31 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 36678888 89999999999999999999999999999999999999999999999999999999999999999997
No 170
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=4.6e-13 Score=89.71 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=74.9
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|.|.|++.+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|++++++.+|++|.++.++.+|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999888774
No 171
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.41 E-value=2.9e-13 Score=111.19 Aligned_cols=75 Identities=21% Similarity=0.444 Sum_probs=66.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCcccccCccccccccccCCeEEEEEEecCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|+|| .+|+++++++++++||.+||++|++.+||||++|+|+ |+|+.|+|+.+|++|+|.+|++++|+......
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 468888 5799999999999999999999999999999999999 89999999999999999999999998766543
No 172
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=3.2e-13 Score=93.61 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.0
Q ss_pred CeeeEEEecCCcEEeeccC-CcCcHHHHHHHHHhHhCCCCCCeEEEecCc-----------c----cCCCCchhhccccc
Q 026932 76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----------~----L~d~~tL~~~~i~~ 139 (230)
.|.|+|++.+|.. .++|+ +++||.+||++|++++++|++.|+|++.++ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3889999999965 78999 999999999999999999999999998887 4 58899999999999
Q ss_pred CCceEEEEE
Q 026932 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|++...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988754
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.39 E-value=1.5e-12 Score=92.37 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=61.1
Q ss_pred eeEEEEeecCc-eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC---e---e-cCCCCcccccCCCCCCEEEEEE
Q 026932 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g---~---~-L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.+.|+..... .+++++++++||++||++|+...|+|+++|+|+|.| + . ++|+++|++|+|++|++|+|..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 45666654443 688999999999999999999999999999999876 3 2 4899999999999999999876
No 174
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.37 E-value=2e-12 Score=83.04 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|+|+.|.++.|.+++++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999875
No 175
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.37 E-value=6.5e-13 Score=91.83 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=73.3
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++|+|.|..|.++.|+++|++++|++|+++..+.||
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 36778888889999999999999999999999999999999999999999999999999999999999999999988
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.37 E-value=3.3e-12 Score=81.98 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=66.5
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~ 222 (230)
+.+.|++.+|+.+.+.+.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 4678888889999999999999999999999999999999999999999999999999999999999985
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.36 E-value=1.4e-12 Score=87.83 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=71.9
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.+|++|+++.++.||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3457888988899999999999999999999999999999999999999999999999999999999999999887764
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.34 E-value=1.4e-12 Score=86.77 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=61.7
Q ss_pred eeeEEEecCCcEEeec-cCCcCcHHHHHHHHHhHhCCCCCCeEEEec--CcccC---CCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+|.|++.+|+.. +. +++++||.+||+.|+++.|+|+++|+|+|+ ++.+. |+.+|++|||.+|++|++..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 6789999999654 77 999999999999999999999999999986 47774 68899999999999987753
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.2e-12 Score=88.41 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=74.1
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.++++|+++.++.+|-
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999998887763
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.33 E-value=2.3e-12 Score=89.09 Aligned_cols=81 Identities=15% Similarity=0.397 Sum_probs=75.1
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++.++++|+++..+.+|+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred e
Q 026932 154 Q 154 (230)
Q Consensus 154 ~ 154 (230)
.
T Consensus 104 ~ 104 (110)
T 2k8h_A 104 E 104 (110)
T ss_dssp -
T ss_pred c
Confidence 3
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=1.2e-11 Score=80.82 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCeeeEEEecCCc-EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
..|.|.|+..+|+ .+.+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|.+++++.+|++|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4588999999996 89999999999999999999999999999999999999999999999999999999875
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.30 E-value=3.9e-12 Score=87.27 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
..|.|.|+. +|+.+.+.|..++++..|+.+++++.|++++.++|+|+|+.|.++.|.+++++.+|++|.+++++.||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458899999 99999999999999999999999999999999999999999999999999999999999999887764
No 183
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.29 E-value=1.3e-11 Score=80.60 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|+++++|+|+|+|+.|.++.|.++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999874
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.27 E-value=5.8e-12 Score=103.45 Aligned_cols=72 Identities=22% Similarity=0.457 Sum_probs=64.5
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~---~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
+.++|+ .+|+++.+++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+...
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 566777 5789999999999999999999999999999999999 89999999999999999999999988653
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=2.9e-11 Score=82.24 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=60.4
Q ss_pred EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC-------ccc-ccCccccccccccCCeEEEE
Q 026932 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-------~~l-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|+. .+|..+...+.+++||.+||.+|+..+|+|+..|+|+|.+ ..| +|..+|+.|++.+|++||+.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 456664 4688999999999999999999999999999999999873 224 56799999999999999987
Q ss_pred E
Q 026932 71 L 71 (230)
Q Consensus 71 ~ 71 (230)
.
T Consensus 91 d 91 (97)
T 1wjn_A 91 W 91 (97)
T ss_dssp C
T ss_pred e
Confidence 5
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=2e-10 Score=79.45 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.1
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
+.+.|+..+|+...+.+.+++++..|+...|++.|++++.++|+|+|..+.++.|..++++++|++|.+...+.|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 566777778888999999999999999999999999999999999999999999999999999999999998775
No 187
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=1.9e-10 Score=78.16 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=57.2
Q ss_pred ecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEEEEEEE
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g-------~~L-~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
.+++.++..++++.||++||.+|+..+|+|+..|+|.|.+ ..| +|.++|++|++.+|++|++.-.
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 3577899999999999999999999999999999999762 235 7889999999999999998753
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.6e-10 Score=84.17 Aligned_cols=76 Identities=12% Similarity=0.277 Sum_probs=71.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|.|+ .+|+.+.+.+.+++++..|++..+++.|+++..++|+|+|..+.++.|..++++++||+|.++..+.||+
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 455665 4788999999999999999999999999999999999999999999999999999999999999999995
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=8e-10 Score=84.01 Aligned_cols=76 Identities=14% Similarity=0.346 Sum_probs=70.9
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|+ .+|+...+.+.+++++..|++..|++.|++++.++|+|+|+.+.++.|..++++++|++|.++..+.||.
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 456665 3788899999999999999999999999999999999999999999999999999999999999999985
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=7.8e-10 Score=76.51 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=70.7
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEee
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
..+.|.|+..+|..+.+.|..++++..|+...+++.|++++.++++|+|+.|.++.|.+++++.+|++|.++....
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 4578888888999999999999999999999999999999999999999999999999999999999999987643
No 191
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.90 E-value=1.8e-08 Score=63.47 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=62.3
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+..++.....+.+.+.++.+|.+|-+..|.+.|||++ .++|.|.|..|+++.++++|++.+|+.|.+++
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3445555567999999999999999999999999998 89999999999999999999999999999874
No 192
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=3.9e-09 Score=80.22 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=73.1
Q ss_pred ecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...+.|.|+ .+|..+.+.+..++++..|+...+++.|++++.+|++|+|+.+.++.|.+++++.+|++|.++..+.+|
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 3456788886 488899999999999999999999999999999999999999999999999999999999999988776
No 193
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.87 E-value=2.6e-10 Score=86.10 Aligned_cols=77 Identities=13% Similarity=0.294 Sum_probs=1.5
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.+.| ..+|+...+.+.+++++..|++..+++.|++++.++|+|+|+.+.++.|.+++++++||+|.++..+.||+
T Consensus 21 ~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred eEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 356666 56788999999999999999999999999999999999999999999999999999999999999999996
No 194
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.2e-09 Score=79.96 Aligned_cols=100 Identities=12% Similarity=0.286 Sum_probs=73.7
Q ss_pred CccccccccccCCeEEEE--EEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCC
Q 026932 53 GRTLADYNIQKESTLHLV--LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130 (230)
Q Consensus 53 ~~~l~~~~i~~~~~i~l~--~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~ 130 (230)
..+|++-+...+.....- ..+...+.|.|+ .+|..+.+.|..++++..|+...+++.|+++..++++|+|+.+.++.
T Consensus 32 ~~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~dd 110 (207)
T 3tix_A 32 TGSLQDSEVNQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQ 110 (207)
T ss_dssp -----------------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSC
T ss_pred cccccccccCCCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCC
Confidence 344544444433333222 233456788886 48889999999999999999999999999999999999999999999
Q ss_pred chhhcccccCCceEEEEEeecce
Q 026932 131 TLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 131 tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
|.+++++.+|++|.+++.+.+|.
T Consensus 111 TPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 111 TPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CTTTTTCCTTEEEEECCCCCTTG
T ss_pred CHHHcCCCCCCEEEEEEeccCCC
Confidence 99999999999999999998884
No 195
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.84 E-value=1.9e-08 Score=63.41 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.4
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.+.+++.....+.+.+.++++|.+|-+..+.+.+||++ .++|.|.|..|+++.++++|++.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 345566677777899999999999999999999999999 89999999999999999999999999998864
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.77 E-value=5.6e-09 Score=68.05 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc---c--ccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~---l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.+.|++.+| ++.+++++++|+.+|+.+|.+.++++++.|.+++.... | .++.+|+++||..|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788988877 77788999999999999999999999999888865433 3 46789999999999998764
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.73 E-value=1.2e-09 Score=82.51 Aligned_cols=84 Identities=12% Similarity=0.297 Sum_probs=1.7
Q ss_pred EEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
...+...|.|.| ..+|..+.+.+..++++..|+...+++.|++++.++++|+|+.+.++.|.+++++.+|++|.++...
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 344556788888 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccee
Q 026932 150 RGGMQ 154 (230)
Q Consensus 150 ~~~~~ 154 (230)
.||..
T Consensus 94 ~GG~~ 98 (227)
T 3v7o_A 94 IGGLT 98 (227)
T ss_dssp --CCC
T ss_pred cCCch
Confidence 88853
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.65 E-value=3.8e-08 Score=64.06 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCc---cc--CCCCchhhcccccCCceEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---QL--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~L--~d~~tL~~~~i~~~~~i~l~ 146 (230)
..|.+.|++.+| .+.+++++++|+.+|+++|++.++++++.+.+.+... .| .++.+|+++|++.|+.+++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347888998888 5678999999999999999999999998887765433 34 37789999999999998764
No 199
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.64 E-value=1.8e-07 Score=62.85 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.0
Q ss_pred eeEEEEeecCc-eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026932 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~ 222 (230)
+.+.|+..+++ .+.+.+..+++...|....+++.|++++..+|+|+|..+.++.|..++++++|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55666767774 78999999999999999999999999999999999999999999999999999999875
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.54 E-value=3.8e-07 Score=61.22 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=65.8
Q ss_pred CCeeeEEEecCCc-EEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEE
Q 026932 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
..+.|.|+..+|. .+.+.+..+++...|....+++.+++++..++.|+|..+.++.|..++++.+|+.|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4577788888884 78999999999999999999999999999999999999999999999999999999764
No 201
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.54 E-value=4.4e-06 Score=70.09 Aligned_cols=142 Identities=23% Similarity=0.333 Sum_probs=109.8
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhC----CCCCCeEEEe------cCcccCCCCchhhcccccCCceEEEEE
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+.|... +.+-.+.++++.||.+....|.++.. .++++.-|++ .|.-|+++++|..|++.+++.+....
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~- 83 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK- 83 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE-
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC-
Confidence 334333 66678999999999999999988874 4677888887 34558888899999999998775543
Q ss_pred eecceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCC-CceEEEECC---------eecCCCCcccccCCCCCCE
Q 026932 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKEST 218 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~~~l~~~g---------~~L~d~~tL~~~~i~~g~~ 218 (230)
..+.+.|...+|+...+.+++.+|+.++-+.|+.+.|+.. +.+-|.+.. .-|+.++++.+.+..+...
T Consensus 84 --~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 161 (371)
T 3ivf_A 84 --KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHET 161 (371)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCE
T ss_pred --ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCce
Confidence 3467888999999999999999999999999999999854 445565421 2456677888877777777
Q ss_pred EEEEEE
Q 026932 219 LHLVLR 224 (230)
Q Consensus 219 i~l~~~ 224 (230)
+++..|
T Consensus 162 l~frvK 167 (371)
T 3ivf_A 162 LLLRRK 167 (371)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 766555
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.51 E-value=3.7e-07 Score=70.49 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=70.9
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..+.+.++. .++...+.+..+++...|++..|++.|++++.++|.|.|..+.++.|..++.++++++|.+..++.||.
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 334556665 667889999999999999999999999999999999999999999999999999999999999999984
No 203
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.49 E-value=3.3e-07 Score=60.01 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.2
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
+||.+.|-..+++...+.+.+++++.++-+..|+++|+.++++.|.|+++.++-+.+++-.|+.+|+.+.++-.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 56788888889999999999999999999999999999999999999999999999999999999999998754
No 204
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.47 E-value=4e-07 Score=60.45 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=47.2
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccc--ccCccccccccccCC
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKES 65 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l--~d~~~l~~~~i~~~~ 65 (230)
..+..+.+.+++.+||..+|++|++.+|||+++|+|.|.|+.+ +++..-.+|.-...+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~ 80 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEE 80 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCC
Confidence 4577899999999999999999999999999999999999654 445555566544443
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.46 E-value=2e-08 Score=82.74 Aligned_cols=78 Identities=13% Similarity=0.301 Sum_probs=0.6
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..+.+.|+. .|+...+.+..++++..|++..|++.|++++.++|+|+|+.+.++.|.+++++++||+|.+...+.||+
T Consensus 20 ~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred CeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 345566665 577889999999999999999999999999999999999999999999999999999999999999995
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.40 E-value=1.6e-06 Score=57.26 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.3
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.+.|+ ..|....+.+..++....|.+..|++.|++++..+|+|+|..+.++.|.+++++++|++|.+++
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455666 3678899999999999999999999999999999999999999999999999999999999876
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.35 E-value=2.3e-05 Score=65.67 Aligned_cols=133 Identities=25% Similarity=0.377 Sum_probs=103.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceeEEec------CcccccCccccccccccCCeEEEEEEecCCeee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
+-+.++..+|+.||.|+-..|.++.. .+.++-.|++. |.=|+++++|..|++.+++.+....++ +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 67889999999999999999977764 35777788873 233888899999999999988877544 788
Q ss_pred EEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC-CCeEEEecC---------cccCCCCchhhcccccCCceEE
Q 026932 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g---------~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.|...+|....+.+++.+|+.++-..|+++.|+.. +..-|.+.. .-|+.++++.+.+......+.+
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 89999999999999999999999999999999754 345666532 2355667777766544444444
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.34 E-value=2.4e-06 Score=55.93 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.2
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+|.|.|-..++++..+.|.+++++.++-+.-++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988754
No 209
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.34 E-value=5.6e-08 Score=80.07 Aligned_cols=83 Identities=13% Similarity=0.317 Sum_probs=0.5
Q ss_pred EEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
...+...+.|.|+. +|..+.+.+..++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.++..+
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34455677888876 67788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecce
Q 026932 150 RGGM 153 (230)
Q Consensus 150 ~~~~ 153 (230)
.+||
T Consensus 94 ~g~~ 97 (360)
T 3ix6_A 94 IGGM 97 (360)
T ss_dssp ---C
T ss_pred CchH
Confidence 8884
No 210
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.32 E-value=3.4e-06 Score=55.67 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..+.|.|+. .|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.+++.|.+++-
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 346777774 6788899999999999999999999999999999999999999999999999999999988753
No 211
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.25 E-value=2.1e-06 Score=66.22 Aligned_cols=82 Identities=12% Similarity=0.303 Sum_probs=71.9
Q ss_pred EEEecCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|.|.. ++..+.+.+..++++..|+...+++.|++++.++++|.|+.+.++.|.++..+.+++.|.+....
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 34445667788876 77788999999999999999999999999999999999999999999999999999999998877
Q ss_pred ecc
Q 026932 150 RGG 152 (230)
Q Consensus 150 ~~~ 152 (230)
.+|
T Consensus 94 ~Gg 96 (209)
T 3uf8_A 94 IGG 96 (209)
T ss_dssp TTC
T ss_pred ccc
Confidence 665
No 212
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.17 E-value=3.1e-06 Score=59.48 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=58.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceeEEe
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-------------------------------------~q~l~~ 45 (230)
+.|+.++|...++.|+++.||.+++..|++..||+.. .|+|..
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999965 344332
Q ss_pred --cCcccccCccccccccccCCeEEEEEE
Q 026932 46 --AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 46 --~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+.-|++..||.++||.+++++.|.-+
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 124577889999999999999777654
No 213
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.15 E-value=0.00011 Score=64.33 Aligned_cols=184 Identities=11% Similarity=0.205 Sum_probs=129.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC-cc-------ccc-----CccccccccccCCeEEEEEEe-----
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQ-------LED-----GRTLADYNIQKESTLHLVLRL----- 73 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-~~-------l~d-----~~~l~~~~i~~~~~i~l~~~~----- 73 (230)
..++.|...+|+.++|..|.+.+|+|+++|||+... +. +.+ ..++.++.- .++.+.+.+..
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~ 115 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPEL 115 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHH
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEeccccc
Confidence 346899999999999999999999999999999531 10 111 122322211 23334444321
Q ss_pred ------------cCCeeeEEEecC--CcEE----eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEec------CcccC-C
Q 026932 74 ------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-D 128 (230)
Q Consensus 74 ------------~~~~~v~v~~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~------g~~L~-d 128 (230)
...+.|++|..+ .+++ .+.|+.+++|+++-..|.+..|+|++.-..+|. -..|+ .
T Consensus 116 ~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 116 AASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp HTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred CCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccc
Confidence 113677777543 3443 356888999999999999999999987665554 24466 5
Q ss_pred CCchhhc--ccccCCceEEEEEeecc------------------eeEEEEe---ecCceEEEEeeccchHHHHHHHhchh
Q 026932 129 GRTLADY--NIQKESTLHLVLRLRGG------------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDK 185 (230)
Q Consensus 129 ~~tL~~~--~i~~~~~i~l~~~~~~~------------------~~i~v~~---~~~~~~~~~v~~~~tV~~LK~~i~~~ 185 (230)
+.|+.++ ++.+|+.|.+-...... +.+.++. .+...+.++++...|-.++-++|++.
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~ 275 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 275 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred cccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 7899999 99999988665443311 3333332 22456999999999999999999999
Q ss_pred hCCCCCceEEE
Q 026932 186 EGIPPDQQRLI 196 (230)
Q Consensus 186 ~~i~~~~~~l~ 196 (230)
.+++|...+|.
T Consensus 276 l~~dP~~lRf~ 286 (530)
T 2ylm_A 276 LNTDPMLLQFF 286 (530)
T ss_dssp HTSCGGGEEEE
T ss_pred hCCCchhEEEE
Confidence 99999998886
No 214
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.12 E-value=3.4e-07 Score=77.42 Aligned_cols=76 Identities=12% Similarity=0.323 Sum_probs=0.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|+. .++...+.+..+++...|++..+++.|+++..++|+|+|+.+.++.|..++++++|++|.+...+.||.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 3455554 567788999999999999999999999999999999999999999999999999999999999999984
No 215
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.10 E-value=9.5e-06 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=49.8
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeec--CCCCcccccCC-CCCCEEEEEE
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI-QKESTLHLVL 223 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L--~d~~tL~~~~i-~~g~~i~l~~ 223 (230)
.++.+.+.+.+++|+..+|++|++++|||++.|+|+|.|+.| +++++-..|-- .+..-|.+.-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 467899999999999999999999999999999999999754 56666555543 3445555544
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.09 E-value=5.9e-06 Score=58.03 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=58.6
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEE-----------------------------------
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----------------------------------- 197 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~----------------------------------- 197 (230)
.+.|+..+|+..++.|+.+.+|.+++..||.+.|++.. .+-|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47889999999999999999999999999999998643 333321
Q ss_pred ---CCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 198 ---AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 198 ---~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
...-|++++||.++||.+++++.|..|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 124568899999999999999887765
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.99 E-value=8.7e-07 Score=74.88 Aligned_cols=83 Identities=11% Similarity=0.318 Sum_probs=0.0
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecce
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...+.|.|+. ++....+.+..+++...|+...+++.|+++..+++.|+|+.+.++.|.+++++.+|++|.++....+|.
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 3456777766 677788999999999999999999999999999999999999999999999999999999999988876
Q ss_pred eEEE
Q 026932 154 QIFV 157 (230)
Q Consensus 154 ~i~v 157 (230)
.+.+
T Consensus 107 n~~~ 110 (389)
T 4da1_A 107 NLYF 110 (389)
T ss_dssp ----
T ss_pred ccce
Confidence 5544
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.72 E-value=0.00011 Score=47.39 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=55.5
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC----c-eeEEecCcccccCccccccccccCCeEEE
Q 026932 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD----Q-QRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~----~-q~l~~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|++.. ..|+++.++++...||.+|...+-+.++++.. . -+..=.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456654 57899999999999999999999999998863 2 12222467899999999999999998865
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.68 E-value=0.00022 Score=46.49 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.3
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L---~d~~tL~~~~i~~g~~i~l~~ 223 (230)
..|.++..+|+.+.-.+..++|+.+|..-|.. .+.+...+.|. |-.+.+ +.++||.++|+.+++++.|--
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45778888999999999999999999999988 46778888888 556777 457899999999999998754
No 220
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.62 E-value=0.00018 Score=46.34 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=52.3
Q ss_pred ecCceEEEEeeccchHHHHHHHhchhhCCCC--Cc-e--EEEECCeecCCCCcccccCCCCCCEEEE
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQ-Q--RLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~--~~-~--~l~~~g~~L~d~~tL~~~~i~~g~~i~l 221 (230)
..++.+.+.++...|+.+|.+.+.+.++++. .. . +..-++..|.++..|++|+|.+||.+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4688999999999999999999999988643 22 3 3346778999999999999999999875
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.58 E-value=0.00059 Score=44.42 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=57.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc---cCccccccccccCCeEEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|..+.-....++||.+|...|.. .+.++....|. |..+.+. .+.||.+.|+.+.+++.+-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5789999999999999999999999999998 67777777777 5567773 4689999999988887764
No 222
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.53 E-value=0.01 Score=51.94 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=124.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ec---Cc---c--cccCcccccccc----ccCCeEEEEE-Ee-
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA---GK---Q--LEDGRTLADYNI----QKESTLHLVL-RL- 73 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~---g~---~--l~d~~~l~~~~i----~~~~~i~l~~-~~- 73 (230)
+...|.++++...|-.++-++|.+..|+.|..-+|+ .+ +. . ...+.+|.+.=- .....+...+ ..
T Consensus 251 ~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ip 330 (530)
T 2ylm_A 251 NDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMK 330 (530)
T ss_dssp TCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSC
T ss_pred CCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCC
Confidence 356799999999999999999999999999988876 21 21 1 122344433211 1112222221 11
Q ss_pred ------cCCeeeEEEecCC--cEEeeccCCcCcHHHHHHHHHhHhCCC---CCCeEEE--ecCc---ccCCCCchhhccc
Q 026932 74 ------RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAGK---QLEDGRTLADYNI 137 (230)
Q Consensus 74 ------~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~---~~~q~L~--~~g~---~L~d~~tL~~~~i 137 (230)
...++|+....+. ..+.+-++.+.||++|-..++++.+++ ....|+. ++++ .+.++.++...+-
T Consensus 331 l~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 331 ITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp HHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred HHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 1345665553332 357788899999999999999999987 4667775 6664 4667777776432
Q ss_pred ccCCceEEEEEee--------cceeEEEEe-------ecCceEEEEeeccchHHHHHHHhchhhCCCCC---ceEE--EE
Q 026932 138 QKESTLHLVLRLR--------GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRL--IF 197 (230)
Q Consensus 138 ~~~~~i~l~~~~~--------~~~~i~v~~-------~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~---~~~l--~~ 197 (230)
.....+.+-.-+. +.+.+.|.. ..|..+.+.+.+..|+.++|++|.+++|++.. .+++ +.
T Consensus 411 ~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~ 490 (530)
T 2ylm_A 411 ATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVM 490 (530)
T ss_dssp CTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEE
T ss_pred cccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEE
Confidence 1133333322111 112233322 23677889999999999999999999999743 4443 43
Q ss_pred CC--eecCCCC
Q 026932 198 AG--KQLEDGR 206 (230)
Q Consensus 198 ~g--~~L~d~~ 206 (230)
.+ ..++|+.
T Consensus 491 ~~~~~yl~d~d 501 (530)
T 2ylm_A 491 MGRHQYINEDE 501 (530)
T ss_dssp TTEEEECCTTT
T ss_pred CCcccccCCcc
Confidence 34 3455543
No 223
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.27 E-value=0.0011 Score=45.43 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.1
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~---d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..|.++..+|+.+.-.++.++|+.++..-|....+.+...+.|+ |..+.+. .++||.+.|+.+.+++.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 46778888999999999999999999999999877777788887 6677775 478999999999988877654
No 224
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.26 E-value=0.00078 Score=47.25 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=59.8
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCccc--CC-CCchhhcccccCCceEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d-~~tL~~~~i~~~~~i~l~ 146 (230)
+...|.|+..+|..+.-.+..++||.+|..-|... +.+.....|+ |-.+.+ .| +.||.+.|+.+.+.+.+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 44678889999999999999999999999999887 7777888888 567878 33 789999999998888654
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.23 E-value=0.002 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=59.7
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccC--C-CCchhhcccccCCceEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d-~~tL~~~~i~~~~~i~l~ 146 (230)
...|.|+..+|..+.-.+..++||.++..-|....+.+.....|. |-.+.+. | +.||.+.|+.+.+++.+.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 457888899999999999999999999999999988777788887 5567775 3 689999999988777554
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.04 E-value=0.0023 Score=44.81 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=60.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L---~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..|.++..+|+.+.-.+..++|+.+|..-|... +.+...+.|+ |-.+.+ +.++||.+.|+.+..++.|...
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 567788889999999999999999999999887 7777888888 667878 3479999999999888877543
No 227
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.96 E-value=0.0038 Score=39.46 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=48.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+..+.....++++++.||++|=++ .|+|++.-....||+.+..+.. ..++++.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 89999999656677999999999998877 8999988877789988877662 247776664
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.0029 Score=40.44 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=56.8
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEec---CcccCCCCchhhccccc
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~tL~~~~i~~ 139 (230)
..+++.|+....+...+.|++..+..++--.|+++..+.++...|... +.+|+-+++|.+|||++
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456677777777888899999999999999999999999999999854 56788899999999986
No 229
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.72 E-value=0.0051 Score=47.44 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=54.8
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCC-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~--~-~g--~~L~d-~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.+.+.++..+|+.+|++.++..++++++ ..||- + .+ ..|++ ++||.++++.+|..|.+-.|-..|.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3667788999999999999999999987 67775 2 22 35555 67999999999999999999888765
No 230
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.62 E-value=0.0076 Score=41.13 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~--d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..|.++..+|+.+.-.+..++|+.+|..-|... +..+..+.|+ |-.+.+. .++||.+.|+.+..++.|.-+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 456778888988888999999999999999865 5566778887 5667774 579999999999999977543
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.57 E-value=0.009 Score=40.77 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE--ecCcccC--CCCchhhcccccCCceEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~tL~~~~i~~~~~i~l~ 146 (230)
..+|.|+..+|..+.-.+..++||.+|..-|... +..+....|. |-.+.+. .+.||.+.|+.+.+++.|.
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 3578888899999888899999999999999865 5566778887 5577775 4789999999998877554
No 232
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.46 E-value=0.016 Score=45.06 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=55.6
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCC-ceEEE-ECC----eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG----KQLED-GRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~-~~g----~~L~d-~~tL~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.+...++..+|+.+|++.++..++++++ ..||- +.+ ..|.| +.||.++++.+|..|.+-.|-..|.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3567778999999999999999999987 68886 332 46654 68999999999999999999877765
No 233
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.44 E-value=0.0063 Score=38.88 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=53.7
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~---~g~~L~d~~tL~~~~i~~ 215 (230)
+.+.|.....+..-+.|+|..+.++|--.||++..+.|+...|.. .+.+|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 344555556678889999999999999999999999999999984 346889999999999987
No 234
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.28 E-value=0.014 Score=40.94 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=54.8
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHh-CCCCCCeEEE--ecCcccCC-CCchhhcccccCC
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~ 141 (230)
+...|.|+..+|..+.-.+..++||.+|..-|.... +.....+.|+ |-.+.+.| +.||.+.|+.+..
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 346788899999999999999999999999999864 3556677887 55677865 6899999998744
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.13 E-value=0.012 Score=41.24 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=54.2
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhh-CCCCCceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~~~l~--~~g~~L~-d~~tL~~~~i~~g~~i 219 (230)
..|.++..+|+.+.-.++.++||.+|..-|.... +.....+.|+ |-.+.+. +++||.+.|+.+...+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 4577788889989999999999999999998863 3456678887 6678885 4799999999985544
No 236
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.06 E-value=0.11 Score=32.14 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=47.5
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|.+.+.... ....++++...|+.+|.+.+ ++++....+..+|.....+. -+++||.|.+.--..||
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 3555555332 23456777778999999876 46677777779999887554 68999999887655554
No 237
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.02 E-value=0.063 Score=34.14 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.6
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
+.-.++-+.++..||+.++.+.+++.+.+.++..+..|+++++|-+.+++-.-.+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4455677788999999999999999999999888888999999999999988888887764
No 238
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.76 E-value=0.056 Score=36.66 Aligned_cols=63 Identities=38% Similarity=0.488 Sum_probs=45.5
Q ss_pred CceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEEC----CeecCCC-------------CcccccCCCCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~~----g~~L~d~-------------~tL~~~~i~~g 216 (230)
+..+++.+-..+||.++|++|-... |.| ++.+.|-|. |+.|.|. .||+.|+|++|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999998864 444 345666652 3456442 38999999999
Q ss_pred CEEEEEEE
Q 026932 217 STLHLVLR 224 (230)
Q Consensus 217 ~~i~l~~~ 224 (230)
+++-+.-+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99987653
No 239
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.70 E-value=0.047 Score=37.06 Aligned_cols=62 Identities=39% Similarity=0.506 Sum_probs=44.3
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec----CcccCCC-------------CchhhcccccC
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE 140 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d~-------------~tL~~~~i~~~ 140 (230)
+..+++.|-..+||.++|++|-+.. |.| ++.+.|-|. |+.|.|. .||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999997753 333 456667763 3444431 48999999999
Q ss_pred CceEEEE
Q 026932 141 STLHLVL 147 (230)
Q Consensus 141 ~~i~l~~ 147 (230)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997753
No 240
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.48 E-value=0.031 Score=35.21 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=47.6
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|++.++..+.....+++++..|+++|-+ +.|+|++...+..||+....+. +.+||.|.+.- ..|||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~-~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR-LIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS-SCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE-eeccc
Confidence 4566665544556688999999998864 4589998887779998886555 33599997765 55554
No 241
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.46 E-value=0.083 Score=37.14 Aligned_cols=65 Identities=32% Similarity=0.525 Sum_probs=47.9
Q ss_pred CceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~----~g~-~L~d~-------------~tL~~~~i~~ 215 (230)
.+.+++.|-..+||.++|++|-... |.| ++..-|-| .|+ .|.|. .||+.|+|++
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3578899999999999999999875 454 34556655 233 35543 2899999999
Q ss_pred CCEEEEEEEec
Q 026932 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++.++-+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999887654
No 242
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.38 E-value=0.17 Score=35.06 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=47.9
Q ss_pred cCceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 214 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~-~g---~-~L~d~-------------~tL~~~~i~ 214 (230)
++..+++.+-..+||.++|++|-... +.| ++.+.|-| .| + .|.|. .||+.|+|+
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999998864 444 35667765 22 3 35442 389999999
Q ss_pred CCCEEEEEEEe
Q 026932 215 KESTLHLVLRL 225 (230)
Q Consensus 215 ~g~~i~l~~~~ 225 (230)
+|+++-+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999987653
No 243
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.14 E-value=0.079 Score=37.27 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=46.2
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec----Cc-ccCCC-------------Cchhhccccc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~tL~~~~i~~ 139 (230)
.+.+++.|-..+||.++|++|-+.. +.| ++..-|-|. |+ .|.|. .||+.|++.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568899999999999999998764 343 344556552 22 25442 3899999999
Q ss_pred CCceEEEEEee
Q 026932 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99998876543
No 244
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.08 E-value=0.13 Score=32.66 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
..-.++-.+++..||..++.+.|++.+.-.+++++..|+++++|.+-++.....+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3456677889999999999999999999999999877999999999999988887776543
No 245
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.03 E-value=0.061 Score=41.32 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=50.0
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEE-ec-C---cccCC-CCchhhcccccCCceEEEEEee
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-G---KQLED-GRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~-~~-g---~~L~d-~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+.+.++..+||.+|++.+++.+++|.+ ..||. +. . ..|++ +.||.++++.++..|.+-.+..
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 567889999999999999999999997 68886 22 2 44655 5799999999999887766543
No 246
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.96 E-value=0.063 Score=34.46 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.9
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCc
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+.|.|+.. -++.+.|++..+..+|..+|+++.++|++...|.|...
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 55666554 68999999999999999999999999999999999753
No 247
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.58 E-value=0.085 Score=40.94 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=49.9
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEe-cC----cccCC-CCchhhcccccCCceEEEEEee
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~g----~~L~d-~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+.+.++..+|+.+|++.+++.++++.+ ..||.. .+ ..|.| +.||.++++.++..|.+-++..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 456779999999999999999999997 688873 32 34665 5899999999999887766543
No 248
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.48 E-value=0.18 Score=31.42 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=45.7
Q ss_pred CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|+....-. -++++ .+.||.+|.+.+....++.. ..-.+..||+...+ .++.+.+++++.+....
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 889999875422 34777 78999999999987544332 22344467766432 34568889998887554
No 249
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.48 E-value=0.2 Score=30.90 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=45.3
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.|+|+|+...++ ..++++...|+.+|.+.+ ++++....+..||..+..+. -+++|+.|.++-.
T Consensus 4 ~m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 477777654432 356677778999998875 56777777778998886554 5778999877643
No 250
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.28 E-value=0.31 Score=32.20 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=47.1
Q ss_pred cceeEEEEeec------C-ceEEEEeeccchHHHHHHHhchhhC-C----------CCCceEEEECCeecCCCCcccccC
Q 026932 151 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 151 ~~~~i~v~~~~------~-~~~~~~v~~~~tV~~LK~~i~~~~~-i----------~~~~~~l~~~g~~L~d~~tL~~~~ 212 (230)
+.|.+.|+... | ....++++...||.+|.+.+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 34556666533 3 3567788778899999999887641 1 1244566788876653 567
Q ss_pred CCCCCEEEEEEEecCC
Q 026932 213 IQKESTLHLVLRLRGG 228 (230)
Q Consensus 213 i~~g~~i~l~~~~~~g 228 (230)
+++||.|.+.-...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999776555444
No 251
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.96 E-value=0.27 Score=34.08 Aligned_cols=64 Identities=28% Similarity=0.454 Sum_probs=46.3
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec-C---c-ccCC---------C----Cchhhcccc
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED---------G----RTLADYNIQ 138 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d---------~----~tL~~~~i~ 138 (230)
++..+++.|-..+||.++|++|-+.. +.| ++.+.|-|. | + .|.| . .||++|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45668888999999999999997753 333 456667662 3 2 2443 1 489999999
Q ss_pred cCCceEEEEE
Q 026932 139 KESTLHLVLR 148 (230)
Q Consensus 139 ~~~~i~l~~~ 148 (230)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999987644
No 252
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.78 E-value=0.25 Score=33.81 Aligned_cols=64 Identities=31% Similarity=0.488 Sum_probs=45.0
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec-Cc----ccCC---------C----Cchhhccccc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-GK----QLED---------G----RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g~----~L~d---------~----~tL~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++.+.|-|. |. .|.| . .||++|++.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457888889999999999997753 343 345566652 31 2333 1 4899999999
Q ss_pred CCceEEEEEe
Q 026932 140 ESTLHLVLRL 149 (230)
Q Consensus 140 ~~~i~l~~~~ 149 (230)
|+++.++.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887543
No 253
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.70 E-value=0.18 Score=34.49 Aligned_cols=64 Identities=31% Similarity=0.499 Sum_probs=46.9
Q ss_pred CceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~-~g---~-~L~d~-------------~tL~~~~i~~ 215 (230)
...+++.+-..+||.++|++|-... |.| ++.+.|-| .| + .|.|. .||+.|+|++
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4458888889999999999998864 444 34566664 23 2 34431 3799999999
Q ss_pred CCEEEEEEEe
Q 026932 216 ESTLHLVLRL 225 (230)
Q Consensus 216 g~~i~l~~~~ 225 (230)
|+++-++-|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998765
No 254
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.55 E-value=0.18 Score=32.35 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.3
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.||..=..++.|+|.++.+..+|..+|.++.++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 445544338999999999999999999999999999888888865
No 255
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.30 E-value=0.32 Score=31.50 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=42.1
Q ss_pred EEEeecc-chHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~-~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++++++. .||.+|.+.+ ++++....+..||.....+ ...+.-+++||.|.++--..||
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 3445666 8999998876 5667777777999887643 4556679999999888755554
No 256
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.29 E-value=0.089 Score=36.94 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
..++.|...+|+.+++..|.+.+|+|+++|||+..
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 45689999999999999999999999999999954
No 257
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.26 E-value=0.68 Score=30.49 Aligned_cols=67 Identities=10% Similarity=0.242 Sum_probs=46.3
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-C----------CCCceeEEecCcccccCccccccccc
Q 026932 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i----------~~~~q~l~~~g~~l~d~~~l~~~~i~ 62 (230)
|+|+|+... | ....+++.++.||.+|.+.+..... + ....-.+..||+.... ++.+.
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888654 3 4678888889999999999877641 1 1122345577776653 56788
Q ss_pred cCCeEEEEEE
Q 026932 63 KESTLHLVLR 72 (230)
Q Consensus 63 ~~~~i~l~~~ 72 (230)
+++++.++..
T Consensus 85 dGDeV~i~pp 94 (98)
T 1vjk_A 85 DGDVVGVFPP 94 (98)
T ss_dssp TTCEEEEESC
T ss_pred CCCEEEEECC
Confidence 8898877643
No 258
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.97 E-value=0.55 Score=29.16 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=39.8
Q ss_pred EEeeccchHHHHHHHhchhhCCCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~--~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+++ ...|+.+|.+.+....++.. ....+..||....+ .+.-+++||.|.+.--..||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 555 56799999999987543322 45666678876432 35568999999887766665
No 259
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=91.68 E-value=0.72 Score=29.67 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=44.2
Q ss_pred ceEEEEeeccchHHHHHHHhchhhC-C-----C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~-i-----~-----~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
....++++...||.+|.+.+..... + . .....+..||+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567788778899999999988752 1 0 123567788887764 4568999999887766665
No 260
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.64 E-value=0.95 Score=36.04 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=54.0
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCc-eEEEE---CC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~---~g--~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
+.+.|...+| +..+.+++.+|+.++-+.|+...|+.... +-|.+ +| .-|+.++++.+.+++.+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4566777777 67899999999999999999999986544 45554 33 24678889988877766666665553
No 261
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.52 E-value=0.78 Score=29.63 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEe
Q 026932 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 9 ~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|+. +++..+ .||.+|.+.+ ++++..-....||+.+.. ..+.++.+.+++++.++...
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEEC
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEccc
Confidence 5654 445676 8999999885 677665555678866643 34556778999999887543
No 262
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.05 E-value=1.1 Score=30.84 Aligned_cols=61 Identities=34% Similarity=0.513 Sum_probs=42.6
Q ss_pred ceEEEEeeccchHHHHHHHhchhh----CCCC----CceEEEEC-C---eecCC----------C----CcccccCCCCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKE----GIPP----DQQRLIFA-G---KQLED----------G----RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~----~i~~----~~~~l~~~-g---~~L~d----------~----~tL~~~~i~~g 216 (230)
+.+++.+-..+||.++|++|-... |.|- +.+.|-|. | ..|.| + .||+.|+|++|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 467888889999999999987753 6553 44555541 2 22222 1 37889999999
Q ss_pred CEEEEEE
Q 026932 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~l~~ 223 (230)
+++-++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 263
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.88 E-value=1.1 Score=36.04 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=55.7
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEE--CCe--ecCCCCcccccCCCCCCEEEEEEEe
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~--~g~--~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
..+.+.|...+| ++.+.+++.+|+.++-..|+...|+... .+-|.+ ++. -|+.++++.+.+++.+....+.+|.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 345677777888 7889999999999999999999998654 344544 342 4788889999877766666555553
No 264
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=90.74 E-value=0.37 Score=29.23 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=41.1
Q ss_pred EEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++++...|+.+|.+.+ ++++....+..+|.....+ ...+.-+++||.|.++--..||
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 3556778999998876 4667777777899877532 2345668999999887755554
No 265
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=90.66 E-value=0.62 Score=28.03 Aligned_cols=60 Identities=13% Similarity=0.315 Sum_probs=41.8
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+. + +..|+.+|.+.+ ++++....+..+|.....+ .-.+.-+++||.|.++--..||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 455544 4 568999998877 4566777777899877533 3445679999999888755554
No 266
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=90.53 E-value=0.72 Score=29.10 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCC-CCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecc
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+......||.+|-+. .+++ +....+-.||..+..+ ...+.-+++|+.|.++-...||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 576555432266899998765 4677 7778888999877543 5667789999999887544433
No 267
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=90.52 E-value=1.3 Score=28.61 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=45.0
Q ss_pred CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCceeEEecCcccccCcccccccc
Q 026932 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------~-------~~~q~l~~~g~~l~d~~~l~~~~i 61 (230)
|+|+|+... |....++. ++.||.+|.+.+...+.- . ...-.+..||+...... -.++.+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~-~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG-GLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT-GGGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC-CCCcCC
Confidence 788888643 43335664 578999999999877520 0 01234556776655422 235668
Q ss_pred ccCCeEEEEEEec
Q 026932 62 QKESTLHLVLRLR 74 (230)
Q Consensus 62 ~~~~~i~l~~~~~ 74 (230)
.+++++.++....
T Consensus 79 ~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 79 ADGDSVTILPAVA 91 (93)
T ss_dssp CTTCEEEEEECCT
T ss_pred CCCCEEEEECCCC
Confidence 8999988876543
No 268
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=90.39 E-value=0.57 Score=29.48 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.6
Q ss_pred eEEEEeeccchHHHHHHHhchhhC-----CCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~-----i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...++ .+..||.+|.+.+..... ++.....+..||+.... +.-+++||.|.+.-...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34454 466799999999886631 23345567788887653 5568999999887655555
No 269
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.95 E-value=0.32 Score=34.06 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
..+.|..++|+.+|+..|++..|+|++.|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 357888999999999999999999999999874
No 270
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.74 E-value=1.5 Score=38.69 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.4
Q ss_pred ceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCC-ceEEEEC---C--eecCCCCcccccCCCCCCEEEEEEEe
Q 026932 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~-~~~l~~~---g--~~L~d~~tL~~~~i~~g~~i~l~~~~ 225 (230)
.+.+.|...+| ++.+.+++++|+.+|-..|+...|+... .+-|.+. | .-|+.++++.+.+++.+....+.+|.
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 45677777777 6789999999999999999999998654 4555542 2 35677889988877777766666654
No 271
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=89.74 E-value=2.7 Score=27.11 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=41.2
Q ss_pred EEEeeccchHHHHHHHhchhhC-----C-C-------CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEG-----I-P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~-----i-~-------~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.++. +..||.+|.+.+..++. + . .....+..||....+..-+ +.-+++||.|.+.--..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 4553 45799999999988752 0 1 1135667888876543222 4568999999888766666
No 272
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.38 E-value=0.52 Score=29.35 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=44.9
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+.+. + +..|+.+|-+. .++++....+..||..+.. ....+.-+++||.|.++--..||.
T Consensus 6 NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 455444 4 56899998764 4778888888899988763 346677899999999887666663
No 273
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=89.23 E-value=1.8 Score=27.63 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=35.0
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecC
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g 123 (230)
..|+|.+. .++..|.+.|+.+.+..+|+.+|..+..+ +...+. |++
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 34566664 44678999999999999999999999988 344444 443
No 274
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.17 E-value=2 Score=27.84 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=35.7
Q ss_pred EEEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEecC
Q 026932 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 47 (230)
Q Consensus 3 v~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~g 47 (230)
|.||. .+|..+.+.++++.+..+|.+++.+.+++++.+ -.+.|..
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 45554 468999999999999999999999999998655 3444543
No 275
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=88.99 E-value=0.42 Score=30.22 Aligned_cols=62 Identities=15% Similarity=0.325 Sum_probs=46.0
Q ss_pred cCceEEEEee--ccchHHHHHHHhchhhCCC-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 161 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~--~~~tV~~LK~~i~~~~~i~-~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+.+ +++ ...|+.+|-+.+ +++ +....+..||..+.. ....+.-+++||.|.++--..||.
T Consensus 6 NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 45544 445 668999987644 677 777888899988864 356677899999999888777664
No 276
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=88.97 E-value=0.49 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=40.8
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCCce--EEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~--~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++...||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+.--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 455666677899999999877641 01233 677899877643 568999999876655544
No 277
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.46 E-value=2 Score=27.82 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=37.6
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEecCcc
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~ 125 (230)
|+|.+. .+|..+.+.++++.+..+|.+++.+.++++.. ...+.|...+
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 445443 45778889999999999999999999998754 4788887643
No 278
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=88.33 E-value=0.91 Score=28.20 Aligned_cols=59 Identities=5% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+.+ ...|+.+|-+. .++++....+..||..+.. ....+.-+++|+.|.++-...|
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgG 64 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQG 64 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccC
Confidence 5665554 56899998764 5888888888899987743 2455667889999988754433
No 279
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.22 E-value=1.4 Score=30.34 Aligned_cols=60 Identities=37% Similarity=0.596 Sum_probs=41.6
Q ss_pred cEEeeccCCcCcHHHHHHHHHhH----hCCCC----CCeEEEec-C---ccc----------CCC----CchhhcccccC
Q 026932 87 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIFA-G---KQL----------EDG----RTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~----~~i~~----~~q~L~~~-g---~~L----------~d~----~tL~~~~i~~~ 140 (230)
+.+++.|-..+||.++|++|-+. .+.|. +.+.|-|. | ..| ++. .||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56888899999999999998653 36554 34555542 2 112 221 37899999999
Q ss_pred CceEEE
Q 026932 141 STLHLV 146 (230)
Q Consensus 141 ~~i~l~ 146 (230)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999765
No 280
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=87.99 E-value=1.7 Score=27.76 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=29.4
Q ss_pred EEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 4 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 4 ~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.||. .++..|.+.|+++.+..+|+.+|.++..+.
T Consensus 14 KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 14 KIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred EEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3443 467899999999999999999999999994
No 281
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=87.16 E-value=0.73 Score=41.48 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=42.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-CcccccCccccccc
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYN 60 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g~~l~d~~~l~~~~ 60 (230)
.++...+.++++.|+.+++..|++.+|||++.|.+.+. |..+++....+.|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 45667889999999999999999999999999999985 56666666666553
No 282
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=87.04 E-value=2.3 Score=25.86 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=39.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+++|...+|+. .++..+.|+.++-..+....+ ...-....||+..+-+ +.+..++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889998888886 567789999999888754332 1112223677665554 445566766664
No 283
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=86.94 E-value=3.6 Score=32.58 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=52.1
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEec---Cc--ccCCCCchhhcccccCCceEEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~---g~--~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+.+.|...+| ++.+.+++.+|+.++-..|++..|+... ..-|.+. |. -|+.++++.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 5677777887 6789999999999999999999997654 3566652 32 367778888876655555555443
No 284
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.69 E-value=3.3 Score=34.21 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=41.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc--cccCcccccccc
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNI 61 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~--l~d~~~l~~~~i 61 (230)
.-....+.+++..|+.+++++++..++++++.|.|.+.+.. ++....-.+|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 34567789999999999999999999999999999998733 333444444443
No 285
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.67 E-value=2.2 Score=27.26 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=42.0
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhC-C-----CC-----CCeEEEecCcccCCCCchhhcccccCCceEEEEEeec
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~-i-----~~-----~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++...||.+|.+.+..++. + .. ....+..||+.... +.-+++|+.|.++-...|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCC
Confidence 5567888888899999999988763 1 10 22566678877764 456788999977654433
No 286
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=86.54 E-value=3.7 Score=36.21 Aligned_cols=63 Identities=32% Similarity=0.524 Sum_probs=46.0
Q ss_pred ceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEEC----Ce-ecCCC-------------CcccccCCCCC
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~~----g~-~L~d~-------------~tL~~~~i~~g 216 (230)
+.+++.|-..+||.++|++|-... |.| ++.+.|-|. |+ .|.|. .||+.|+|++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 568888999999999999998653 444 345566652 23 35442 38999999999
Q ss_pred CEEEEEEEe
Q 026932 217 STLHLVLRL 225 (230)
Q Consensus 217 ~~i~l~~~~ 225 (230)
+++-++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887664
No 287
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=86.46 E-value=0.2 Score=31.61 Aligned_cols=55 Identities=9% Similarity=0.197 Sum_probs=39.8
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
..+++++..||.+|.+.+. +++....+..||+....+ .-+++||.|.+.--..||
T Consensus 23 ~~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 3445566789999987764 566777777899887654 568999999776655544
No 288
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=85.17 E-value=3.7 Score=32.90 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=54.8
Q ss_pred cCCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC-CCeEEEe--cC--cccCCCCchhhcccccCCceEEEEE
Q 026932 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AG--KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~--~g--~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
...+.+.|...+| ++.+.+++++|+.++-..|++..|+.. +..-|.+ +| .-|+.++++.+.+...+....+..+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3557788888898 788999999999999999999999764 3356665 33 2377788888877665555544443
No 289
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=85.15 E-value=4.3 Score=35.68 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=46.5
Q ss_pred CceEEEEeeccchHHHHHHHhchhh--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--~i~------~~~~~l~~----~g~-~L~d~-------------~tL~~~~i~~ 215 (230)
.+.+++.|-..+||.++|++|-... |.| ++.+.|-| .|+ .|.|. .||++|+|++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568888889999999999998864 443 45566665 223 34431 3799999999
Q ss_pred CCEEEEEEEec
Q 026932 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++-++-+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999887653
No 290
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=84.92 E-value=2.5 Score=26.98 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=40.3
Q ss_pred EEEeeccchHHHHHHHhchhhC------C-----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~------i-----~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
.++++...||.+|.+.+..... + ......+..||+..... .-.+.-+++||.|.+.-...||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 3455566899999999887741 1 11446677888766422 1234568999999876655554
No 291
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.58 E-value=1.8 Score=26.77 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=39.3
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCCCe--EEEecCcccCCCCchhhcccccCCceEEEEE
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
....++++...||.+|.+.+...+. ..... .+..||+....+ .-+++|+.|.++-.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence 3457777788899999999887742 11233 677888877643 56888998877643
No 292
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=84.52 E-value=1.9 Score=26.95 Aligned_cols=57 Identities=4% Similarity=0.086 Sum_probs=38.8
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhC-----CCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
....++ ....||.+|.+.+...+. ++.....+..||+.... +.-+++|+.|.++-..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence 345566 667899999999886642 23344567788877643 4567899998776433
No 293
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.87 E-value=7.3 Score=26.34 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=42.7
Q ss_pred eeeEEEecC------C--cEEeeccCC---cCcHHHHHHHHHhHhC-C---------CCCC-eEEEecCcccCCCCchhh
Q 026932 77 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEG-I---------PPDQ-QRLIFAGKQLEDGRTLAD 134 (230)
Q Consensus 77 ~~v~v~~~~------g--~~~~~~v~~---~~tV~~lK~~i~~~~~-i---------~~~~-q~L~~~g~~L~d~~tL~~ 134 (230)
|+|+|+... | +.+.++++. ..||.+|...+.+++. . ...+ ..+..|+...+-- -=.+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gld 90 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GELD 90 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCcC
Confidence 556665432 2 356677773 3699999999998861 1 0111 2233344321100 0124
Q ss_pred cccccCCceEEEEEeecc
Q 026932 135 YNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~ 152 (230)
+-+++|+.|.++....+|
T Consensus 91 t~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 91 YQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CBCCSSEEEEEEECSCCC
T ss_pred cCCCCCCEEEEeCCCCCC
Confidence 678899998887666665
No 294
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=83.31 E-value=2.9 Score=33.39 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=52.6
Q ss_pred cceeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCc-eEEEEC---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026932 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~---g--~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..+.+.|...+|....+.+++.+|+.+|-..|+.+.|+.... +-|.+. | .-|+.++++.+........+.+.++
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 346678888899999999999999999999999999986543 445432 2 3467778887765444455555444
No 295
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=82.85 E-value=2.8 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=39.7
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+|+.+. + ++.||.+|...+ ++++..-....||+.+.. ....+..+.+++++.++..
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEEC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEee
Confidence 4676654 4 679999999886 566655555677766543 3455567889999888754
No 296
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=82.83 E-value=4.8 Score=25.22 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=52.6
Q ss_pred EEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.++.......+-+-.++++.+|+....++ -.|.-..+.+|-...-++.|+.+.+.-|-+=|+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 4677777778788788889999999888777 566677899999999999999999998865554
No 297
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=82.60 E-value=4.6 Score=25.88 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=45.9
Q ss_pred EEEEeecCc-eEEEEeec-cchHHHHHHHhchhhCCCCCceEEE-ECC---eecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 155 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~-~~~~~v~~-~~tV~~LK~~i~~~~~i~~~~~~l~-~~g---~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++.+..+.+ ...+.++. ..+|.+||++|..+.++-..++-|. ++. .+..|+. .-|..++.|.+...+.+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~----~lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN----ALIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT----CEEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc----eEEecCCEEEEEeccCcc
Confidence 444554443 35677774 5699999999999887755566554 433 3444443 346777888777767766
Q ss_pred C
Q 026932 229 G 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 85 ~ 85 (86)
T 2c7h_A 85 V 85 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 298
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.37 E-value=5.5 Score=35.07 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC-CeEEEecC-----cccCCCCchhhcccccCCceEEEEE
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..+.+.|...+| ++.+.+++++|+.+|-..|+...|+... .+-|.+.. ..|+.+.++.+.++..+..+.+..+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 346778888888 6789999999999999999999997643 45666532 3466778888877666666555444
No 299
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.99 E-value=7.4 Score=25.88 Aligned_cols=66 Identities=9% Similarity=0.211 Sum_probs=50.7
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecC--cccccCccccccccccCCeEEEEEEe
Q 026932 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+..-+++.+..+.|+.+++..+.++.+...+.+.|. ++| ..|+++..--.-.+..+.++++..+.
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3556778999999999999999999999887778887 456 34566655555667777888887654
No 300
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=81.69 E-value=8.6 Score=25.05 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred CEEEEEccC-------C-cEEEEEec--CCCcHHHHHHHhhhhhCCC-CCc------e------eEEecCcccccCcccc
Q 026932 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------Q------RLIFAGKQLEDGRTLA 57 (230)
Q Consensus 1 m~v~v~~~~-------g-~~~~~~v~--~~~tv~~lK~~i~~~~gi~-~~~------q------~l~~~g~~l~d~~~l~ 57 (230)
|+|+|+... | +...+++. ++.||.+|.+.+.+...-. +.. . .+..|+...+-. .=.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEK 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCC
Confidence 567887632 2 46667777 7899999999998876311 110 0 122344321100 013
Q ss_pred ccccccCCeEEEEEEe
Q 026932 58 DYNIQKESTLHLVLRL 73 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~~ 73 (230)
++.+.+++++.++...
T Consensus 81 d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 81 DYILEDGDIISFTSTL 96 (99)
T ss_dssp GCBCCTTCEEEEEECT
T ss_pred CcCcCCCCEEEEECCC
Confidence 4568889998876543
No 301
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=81.60 E-value=1.9 Score=25.97 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEEEe
Q 026932 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+|+.+ +++...|+.+|.+.+ +++.....+..||...... ...+.-+++|+.|.++-..
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56544 556778999998876 5667777777888776431 2334567899998776433
No 302
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=81.33 E-value=4.1 Score=35.81 Aligned_cols=65 Identities=29% Similarity=0.503 Sum_probs=45.4
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec-C---c-ccCC---------C----Cchhhccccc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED---------G----RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d---------~----~tL~~~~i~~ 139 (230)
...+++.|-.++||.++|++|-+.. +.| ++.+.|-|. | + .|.| + .||++|++.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4668889999999999999997753 333 455666652 2 2 2333 1 4899999999
Q ss_pred CCceEEEEEee
Q 026932 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.++.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99998876654
No 303
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=80.37 E-value=9.7 Score=24.82 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=41.9
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCCC---------ce-------eEEecCcccccCccc
Q 026932 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTL 56 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~---------~q-------~l~~~g~~l~d~~~l 56 (230)
|+|+|+... | +.. +++ +.||.+|.+.+...+. +... .- .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 678888754 3 244 444 6899999999887641 1110 11 455777655332 23
Q ss_pred cccccccCCeEEEEEE
Q 026932 57 ADYNIQKESTLHLVLR 72 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~ 72 (230)
.++.+.+++++.++..
T Consensus 80 ~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 80 LETLLKDSDEIGILPP 95 (99)
T ss_dssp TTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCEEEEECC
Confidence 3456888898887643
No 304
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.68 E-value=0.8 Score=28.69 Aligned_cols=49 Identities=8% Similarity=0.200 Sum_probs=36.1
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEecCcccCCCCchhhcccccCCceEEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.++++...||.+|.+.+ +++.....+..||+....+ .-+++|+.|.++-
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 45667778999988765 4677777778899887654 5677888887653
No 305
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.39 E-value=5.1 Score=35.31 Aligned_cols=63 Identities=32% Similarity=0.524 Sum_probs=44.7
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHh--CCC------CCCeEEEec-C---c-ccCCC-------------CchhhcccccC
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLEDG-------------RTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d~-------------~tL~~~~i~~~ 140 (230)
..+++.|-.++||.++|++|-+.. |.| ++.+.|-|. | + .|.|. .||++|++.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457888999999999999998642 333 455666652 2 2 24331 48999999999
Q ss_pred CceEEEEEe
Q 026932 141 STLHLVLRL 149 (230)
Q Consensus 141 ~~i~l~~~~ 149 (230)
+++.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876554
No 306
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=78.48 E-value=13 Score=25.10 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=38.3
Q ss_pred eEEEEeec---cchHHHHHHHhchhh-CCC---------CC-ceEEEECCeecCCCCcc--cccCCCCCCEEEEEEEecC
Q 026932 164 TITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 164 ~~~~~v~~---~~tV~~LK~~i~~~~-~i~---------~~-~~~l~~~g~~L~d~~tL--~~~~i~~g~~i~l~~~~~~ 227 (230)
.+.++++. ..||.+|...+++.+ +.. .. ...++.|+.... -+ .++-+++||.|.+.--..|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHCTTTCBCCSSEEEEEEECSCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccCCcCcCCCCCCEEEEeCCCCC
Confidence 56677773 369999999999886 110 11 122334443111 11 3577999999988776666
Q ss_pred C
Q 026932 228 G 228 (230)
Q Consensus 228 g 228 (230)
|
T Consensus 108 G 108 (114)
T 1wgk_A 108 G 108 (114)
T ss_dssp C
T ss_pred C
Confidence 6
No 307
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=78.46 E-value=2.5 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
+..+.+.|+++.+..+|..+|..+++++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 6689999999999999999999999986
No 308
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.44 E-value=10 Score=25.13 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=48.0
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE---ecCcc--cCCCCchhhcccccCCceEEEEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+...|...+...+.+.+..+.|+.+++..+.++.+...+.+.|. ++|.. +.++..--.-.+.-+..+++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33445455666788899999999999999999999876677776 56643 44443332333455566655443
No 309
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=76.69 E-value=2 Score=29.02 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=42.2
Q ss_pred CeeeEEEecC------CcEEeeccCC----cCcHHHHHHHHHhHhCCCCCCeEEEec-C--c------ccCCCCch----
Q 026932 76 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRTL---- 132 (230)
Q Consensus 76 ~~~v~v~~~~------g~~~~~~v~~----~~tV~~lK~~i~~~~~i~~~~q~L~~~-g--~------~L~d~~tL---- 132 (230)
.|+|.|+... |+...++++. ..||.+|-..+.+.+. ..+-.|+.. | . .|-++..+
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 3556666543 3445677773 3599999999988752 112222211 2 1 12122222
Q ss_pred -hhcccccCCceEEEEEeecce
Q 026932 133 -ADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 133 -~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+|-+++|+.|.++....+|.
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 246689999988776666654
No 310
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.82 E-value=5.9 Score=26.16 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=44.0
Q ss_pred CeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCe-EEE-ec-----CcccCCCCchhhc
Q 026932 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~~-----g~~L~d~~tL~~~ 135 (230)
...|.|...+|....+.|++.+|+.++-+.+..+.+...+.- .|+ +. -+.++|...+-+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 456777788999999999999999999999999988654433 333 11 2557777665544
No 311
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=75.09 E-value=4.7 Score=32.14 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=45.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEec---C--cccccCcccccc
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADY 59 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g--~~l~d~~~l~~~ 59 (230)
|.+.|..++|....++|++.+|+.|+=..|.+..|+.... --|.+. | .-|+.++.+.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 5688999999999999999999999999999999998533 345443 2 225556666554
No 312
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=73.93 E-value=3.2 Score=27.97 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceEEEEeec----cchHHHHHHHhchhhCCCCCceEEE-ECC--e------ecCCCCcc-----cccCCCCCCEEEEEEE
Q 026932 163 KTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL-----ADYNIQKESTLHLVLR 224 (230)
Q Consensus 163 ~~~~~~v~~----~~tV~~LK~~i~~~~~i~~~~~~l~-~~g--~------~L~d~~tL-----~~~~i~~g~~i~l~~~ 224 (230)
+...++++. ..||.+|-..+++.+. ..+-.++ -+| . +|-+++.. .+|-+++||+|.+.-.
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 455677773 3599999999988752 1111221 111 0 22222221 3577999999877554
Q ss_pred ecCC
Q 026932 225 LRGG 228 (230)
Q Consensus 225 ~~~g 228 (230)
+-||
T Consensus 99 lhg~ 102 (110)
T 2k9x_A 99 LHGG 102 (110)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 4444
No 313
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=73.82 E-value=4.4 Score=26.70 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=42.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCC-----------ceeEEecC-ccccc------CccccccccccCCeEEEE
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----------~q~l~~~g-~~l~d------~~~l~~~~i~~~~~i~l~ 70 (230)
....+++++++|..++-..+.+.-.+... ...||+.+ ..|+. +++|.+.|+.+|..|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35678999999999999999885332221 45566655 23322 577999999999988774
No 314
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=73.34 E-value=5.1 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=29.5
Q ss_pred eeeEEEecC-------CcEEeeccCCcCcHHHHHHHHHhHhCCC
Q 026932 77 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 77 ~~v~v~~~~-------g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
++|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 555565432 5578899999999999999999999865
No 315
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.75 E-value=6.9 Score=25.84 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=46.8
Q ss_pred eeEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCC-CceEEE--EC----CeecCCCCcc----cccCCCCCCEEEE
Q 026932 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FA----GKQLEDGRTL----ADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~~~l~--~~----g~~L~d~~tL----~~~~i~~g~~i~l 221 (230)
..+.+...+|....+.|++++|+.++-++++.+.+... ....|+ +. -+.++|+..+ ....+.....+.+
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 44666778899999999999999999999999987653 345554 22 1456666544 3334444555544
No 316
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=72.70 E-value=15 Score=23.16 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=47.6
Q ss_pred EEEEeeccchHHHHHHHhchhh-C--CC--CC-ceEEEECC--eecCCCCcccccCCCCCCEEEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-~--i~--~~-~~~l~~~g--~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
.-+.++..+|+.++=++++-.. | ++ +. ..+..++| ..+..+.|+++.||.+=+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4577888999999988887753 3 32 22 46777888 8999999999999999999988763
No 317
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=71.71 E-value=3.9 Score=36.80 Aligned_cols=51 Identities=29% Similarity=0.593 Sum_probs=42.6
Q ss_pred cCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEE-CCeecCCCCccccc
Q 026932 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 211 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~-~g~~L~d~~tL~~~ 211 (230)
..+...+.+.++.|+.+++..|++.+|++++.|.+++ .|..+++..+...|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566788999999999999999999999999999884 55667777776665
No 318
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=71.67 E-value=8.7 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=41.8
Q ss_pred CceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCe--ecCCCCcccccCC
Q 026932 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNI 213 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~--~L~d~~tL~~~~i 213 (230)
.....+.+.+..|+.++++.+++.++++++.|.+++.+. .++...+-..|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 445778888999999999999999999999999998873 3355566666654
No 319
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.20 E-value=16 Score=22.90 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=37.6
Q ss_pred EEEecCCCcHHHHHHHhhhhhC------C-----CCCceeEEecCcccccCccccccccccCCeEEEEEE
Q 026932 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g------i-----~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+++..+.||.+|.+.+..... + ....-.+..||+..... ...++.+.+++++.++..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 3566667999999999877642 1 11233456788766532 234556889999887643
No 320
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=70.90 E-value=17 Score=22.96 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=47.3
Q ss_pred EEEEeeccchHHHHHHHhchhh-C--CC--CCceEEEECCee--cCCCCcccccCCCCCCEEEEEE
Q 026932 165 ITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-~--i~--~~~~~l~~~g~~--L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
.-+.++..+|+.++=++++... | ++ +...+..++|.. +..+.|+++.|+++-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4577888999999988887753 4 22 235677799987 9999999999999999998875
No 321
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=70.75 E-value=10 Score=22.81 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=39.1
Q ss_pred eEEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
.+.+...+|+. .+++...|+.++-+.+....+ ........+|+..+-+ +-+++|+.|.+.-.
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 45566556654 566778999999888765432 2223334688766554 45567888877653
No 322
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=70.37 E-value=20 Score=23.49 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=55.4
Q ss_pred EEEEEccCC---cEEEEEecCCCcHHHHHHHhhhhhCCCCC--ceeEEecCc---ccccCccccccccccCCeEEEEE
Q 026932 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gi~~~--~q~l~~~g~---~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+|.-++. ...+++|..+.-|+-+-.++.+...++.+ +-.|.+..+ .+....||..||+..++.++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 688888654 56889999999999999999988887753 355565443 36778999999999999988764
No 323
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=70.30 E-value=18 Score=22.89 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=45.4
Q ss_pred eeccCCcCcHHHHHHHHHhHh-C--CC--CCCeEEEecCcc--cCCCCchhhcccccCCceEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i~--~~~q~L~~~g~~--L~d~~tL~~~~i~~~~~i~l~ 146 (230)
-+.|+..+|+.++=++++... | ++ +...+..++|.. +.++.|+++.|+.+-+.|.+.
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 467888999999998887753 3 22 235677789988 999999999999999888765
No 324
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=70.21 E-value=19 Score=23.30 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=38.4
Q ss_pred ceEEEEee--ccchHHHHHHHhchhhCCC-C--------C----ceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026932 163 KTITLEVE--SSDTIDNVKAKIQDKEGIP-P--------D----QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 163 ~~~~~~v~--~~~tV~~LK~~i~~~~~i~-~--------~----~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~ 227 (230)
+...++++ +..||.+|...+.+++.-. . . ...+..|+...+-... .++-+++||+|.+.-...|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence 34566666 5689999999998876211 1 0 1223355543210001 2557999999987665555
Q ss_pred C
Q 026932 228 G 228 (230)
Q Consensus 228 g 228 (230)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 325
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.03 E-value=9.4 Score=26.31 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred cchHHHHHHHhchhhCCCC-------CceEEEECCeec-CCCCcccccCCCCCCEEEEE
Q 026932 172 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tV~~LK~~i~~~~~i~~-------~~~~l~~~g~~L-~d~~tL~~~~i~~g~~i~l~ 222 (230)
..|..+|-+.+..++|... ..++|+|.--.= .-.++|+++|+++|+.+.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4688888777877777643 134555544221 23589999999999998765
No 326
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=68.97 E-value=19 Score=22.73 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.8
Q ss_pred eeccCCcCcHHHHHHHHHhHh-C--C---CCCCeEEEecC--cccCCCCchhhcccccCCceEEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i---~~~~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
-+.|+..+|+.++=++++... | + |....+..++| +.+..+.|+++.||.+-..|.+..
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 467889999999999887753 3 3 22346777888 889999999999999988887654
No 327
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=66.80 E-value=24 Score=23.92 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=49.3
Q ss_pred ceEEEEeeccchHHHHHHHhchhh-C-------CCCCceEEEECCeec--CCCCcccccCCCCCCEEEEEEE
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKE-G-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~-~-------i~~~~~~l~~~g~~L--~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
..+.+-++++++..+|-+.+-... + |+-+.-.+..+|+.. +.+++|.+.|+..-|.|.+.-.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TP 109 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTP 109 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECT
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCC
Confidence 358899999999999987776643 3 455566788899877 5689999999999999987644
No 328
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=66.41 E-value=8.7 Score=27.90 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=42.0
Q ss_pred EEEeeccchHHHHHHHhchhhC-C---------CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026932 166 TLEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~~-i---------~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.++++. .||.+|.+.+...+. + ......+..||....... -.+.-+++||.|.++--..||.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECcccccc
Confidence 445555 899999999887641 1 023456778888776532 2345699999998877666664
No 329
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=66.13 E-value=22 Score=22.30 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=50.5
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhcccccCCceEEEEEee
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
.+.|+..+....+-+-.++++.+|+....++. .|.-++...+-...=++.|+.+.+.-|.+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 46788888888888889999999998887775 47778888888888889999998876654
No 330
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=65.99 E-value=12 Score=25.83 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=35.6
Q ss_pred cCcHHHHHHHHHhHhCCCC-------CCeEEEecCcccCC--CCchhhcccccCCceEEEE
Q 026932 96 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~i~~-------~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~ 147 (230)
..|..+|-..+..++|.+. ..++|+|.- ..+| .++|++.|+++|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEc
Confidence 4689998888888888753 134444432 1222 6899999999999887664
No 331
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.84 E-value=13 Score=24.41 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=41.0
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCCCC-----------CeEEEecC-cccC------CCCchhhcccccCCceEEE
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~-----------~q~L~~~g-~~L~------d~~tL~~~~i~~~~~i~l~ 146 (230)
...++++++.|..+|-..+++.-.+... ...|+..+ ..|+ -+++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4578899999999999999996443322 33444333 1232 2567899999999988775
No 332
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=65.67 E-value=9.2 Score=24.85 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=33.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCcc
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~~ 49 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-. +...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999987643 4456643
No 333
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=64.39 E-value=17 Score=23.17 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=38.1
Q ss_pred EEEEccCCc-EEEEEe-cCCCcHHHHHHHhhhhhCCCCCceeEE-ecC---cccccCccccccccccCCeEEEEEEe
Q 026932 3 IFVKTLTGK-TITLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~-~~~~~v-~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+-|.-..+ ..++.+ +.+.+|.|||++|-.+.+.-..+--|. ++. ++-.|+..+ |..++.+.+.-.|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrRvP 81 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRRIP 81 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEecc
Confidence 455554444 334555 356799999999999888765444444 432 233333222 5566665554333
No 334
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=62.17 E-value=26 Score=30.48 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC--CCeEEEecC----cccCCCCchhh
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG----KQLEDGRTLAD 134 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g----~~L~d~~tL~~ 134 (230)
..+.+.|...+|....+.+++.+|+.++-..|+++.|+.. +..-|.+.. ..|.++..+.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 3467788889999999999999999999999999999874 456776532 12555555443
No 335
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=61.85 E-value=10 Score=24.16 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999986543
No 336
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=59.96 E-value=15 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=37.0
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCc-eEEEECCeecCCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~g~~L~d~~tL~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++. ..|+.++.....+.++++.
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 4467899999999999999999987775 5666788755667777654
No 337
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=59.37 E-value=19 Score=23.37 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=37.0
Q ss_pred EEeeccchHHHHHHHhchhhC-CCC---------Cce-------EEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026932 167 LEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~~-i~~---------~~~-------~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~~g 228 (230)
++++ ..||.+|.+.+..... +.. ... .+..||+...... -.+.-+++||.|.+.-...||
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 3444 5899999999887741 111 123 5667886553221 234568999999876655554
No 338
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=59.05 E-value=31 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhc
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~ 135 (230)
.+-|+.+.||+++...|..+..++++.-..+| ++.....+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 34577788999999999999998887644444 55544556666654
No 339
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=58.08 E-value=29 Score=23.65 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=43.9
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCC------CeEEE---ecCcc--cCCCCchhhcccccCCceEE
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~------~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l 145 (230)
+...|...+...+.+.+..+.|+.+++..++++.+...+ .+.|. ++|.. |.++..--.-.+.-++.+++
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 334444556666778889999999999999999987543 66665 56643 44433222223444555544
Q ss_pred E
Q 026932 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
.
T Consensus 90 c 90 (120)
T 2dhz_A 90 C 90 (120)
T ss_dssp E
T ss_pred e
Confidence 4
No 340
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=57.55 E-value=12 Score=24.16 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCc
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~ 48 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-. +...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 378999999999999999999999999986643 345554
No 341
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=56.99 E-value=11 Score=23.44 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
..+.+.|+++.+..+|..+|..+++..
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 467899999999999999999999975
No 342
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=56.78 E-value=38 Score=22.13 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=50.8
Q ss_pred eeEEEecCC---cEEeeccCCcCcHHHHHHHHHhHhCCCC--CCeEEEecC---cccCCCCchhhcccccCCceEEE
Q 026932 78 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g---~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.|+|...+. ....+.|..+.-|+.+..++-+..+++- +..-|-+.. ..+.-..||..||++.++.+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 455655443 4578888888999999999988877543 455565543 45678899999999999988664
No 343
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=56.57 E-value=42 Score=23.16 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=39.7
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCccc-CCCCchhhccc---ccCCceEEEE
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++...|.++..++++.--.+ |.+..+ ..+.++++.-= .++..+++..
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 118 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVY 118 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEE
Confidence 3568889999999999999999998876655 655544 44566655421 2344555544
No 344
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.35 E-value=15 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 468999999999999999999999999986543
No 345
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=56.29 E-value=33 Score=22.34 Aligned_cols=56 Identities=5% Similarity=0.066 Sum_probs=40.0
Q ss_pred ceEEEEeeccchHHHHHHHhchhh---CCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~---~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
..+.+++++..||.++-+...-.. .+..+...+..+|+... .+.-+++||.|.+.-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 356788889999999987765421 34555677777787666 455588999998754
No 346
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=56.25 E-value=39 Score=22.00 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=39.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCcccccCccccccccccCCeEEEEE
Q 026932 11 KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
..+.+++.++.||.++=+...-. ..|......+-.+|+... .++-+.+|+++.+.-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 46778999999999998875431 233444456778888776 455578889988763
No 347
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=56.19 E-value=13 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=30.1
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecC
Q 026932 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g 47 (230)
.+++.|++.+|=.|+|+.|+..+|+.+..-.-. ..|
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 389999999999999999999999998764432 444
No 348
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=55.65 E-value=28 Score=22.49 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.1
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEE-EecCcc
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 125 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L-~~~g~~ 125 (230)
...+.|.|++.+|=.++|+.++..+++.+...+- ...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 3578999999999999999999999999988754 466654
No 349
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=54.31 E-value=30 Score=21.46 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=40.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEE
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|+|.+++|..+ ++..+.|+.|+=..|....|-.. ---..+|+..+-+ +.+.+++.+.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEE
Confidence 589999999764 67889999999888765554221 2223577655543 456677776665
No 350
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=53.89 E-value=26 Score=30.44 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=34.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
|.+.|..++|....+.+++.+|+.++-..|....|+..
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 35778889999999999999999999999999999985
No 351
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=53.79 E-value=34 Score=23.63 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=35.1
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCeec-CCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~~L-~d~~tL~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++.-.++ |.+..+ ..+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 45678999999999999999999988765444 655444 556666654
No 352
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.39 E-value=25 Score=23.96 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCC------ceeEE---ecC--cccccCccccccccccCCeEEEEEE
Q 026932 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~------~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+..-+++.+..+.|+.+++..+.++.+...+ .+.|. ++| ..|+++..--.-.+..++++++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4455678999999999999999999987654 67777 356 3355554444455666677777654
No 353
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=53.33 E-value=17 Score=25.03 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=35.7
Q ss_pred EEEEeeccchHHHHHHHhchhhCCCCCc-eEEEECCeecCCCCccccc
Q 026932 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-~~l~~~g~~L~d~~tL~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++. ..|+.++.....+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 4467899999999999999999987776 5555666544566777654
No 354
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=51.17 E-value=32 Score=22.86 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=48.2
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCC--CCeEEEecC---cccCCCCchhhcccccCCceEEE
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|+|...+ ...+++|..+.-|+.+..++-+..+++- +..-|-+.. ..+.-..||..||++.++.+++.
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 4443333 5678888888999999999988876543 344555433 45678899999999999887654
No 355
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=50.79 E-value=37 Score=26.79 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=42.5
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe---c----CcccCCCCchhhc
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---A----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~----g~~L~d~~tL~~~ 135 (230)
+.+.|...+|....+.|++++|+.++-..+..+.+.+...-.-++ . -+.|+|...+.+.
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 346666778889999999999999999999888876544333222 1 2667887776654
No 356
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.50 E-value=21 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=31.8
Q ss_pred hHHHHHHHhchhhCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEEEE
Q 026932 174 TIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 174 tV~~LK~~i~~~~~i~~~~~~l~--~~g~~L~d~~tL~~~~i~~g~~i~l~~ 223 (230)
+.++|+.+.+..++++.....|+ .+|.+++|+.=+..+ +..++.+.+
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL 77 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMIL 77 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEE
Confidence 79999999999999976666665 468887765433322 344554444
No 357
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=49.84 E-value=15 Score=22.92 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.6
Q ss_pred EEeeccCCcCcHHHHHHHHHhHhCCC-----CCCeEEEecC
Q 026932 88 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 123 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g 123 (230)
.+.+.|+++.+..+|..+|.++.+.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56788999999999999999999865 2445666654
No 358
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=49.38 E-value=53 Score=21.52 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+|.||.. .|+.+.+++..--+..||..++...+|-+. -|.|.+
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n 51 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTN 51 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 4677765 688999999999999999999999999866 455543
No 359
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=49.34 E-value=33 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=24.9
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026932 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
.+=.++|-...++++.++|+.++|..+-+.
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 333568999999999999999999976665
No 360
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=48.78 E-value=70 Score=24.82 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=39.2
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEEec-------CcccCCCCchhhc
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-------g~~L~d~~tL~~~ 135 (230)
..|.|...+|....+.|+++.|+.+|-..+..+..+..+.-..++. -+.|+|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 3566767888999999999999999999988887654433332221 2667887766554
No 361
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=48.50 E-value=27 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=29.1
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHh
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~ 110 (230)
..+.+.+-..+|-.+.++++.++|+.++|+.+-++.
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 335566667889888999999999999999887763
No 362
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=48.31 E-value=61 Score=21.92 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=45.3
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh-hCCCC-------CceeEEecCccccc--CccccccccccCCeEEEE
Q 026932 11 KTITLEVESSDTIDNVKAKIQDK-EGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~-~gi~~-------~~q~l~~~g~~l~d--~~~l~~~~i~~~~~i~l~ 70 (230)
..+.+.+.|++|.+++-+.+-.- .+..| +.-.+..+|+.... +++|++.|+...+.|...
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 35789999999999988775543 44444 34456778888754 699999999999887665
No 363
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=48.13 E-value=19 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +.+|+.+.++++++.|+.++=+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (166)
T 1n62_A 5 HIEL-TINGHPVEALVEPRTLLIHFIREQ 32 (166)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHc
Confidence 4555 457999999999999999977664
No 364
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=47.77 E-value=25 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.5
Q ss_pred ceEEEEeeccchHHHHHHHhchhhCCCCCceEEE-ECCe
Q 026932 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~-~~g~ 200 (230)
..+.+.|++..|-.++|+.++..+++.+....-+ ..|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 6799999999999999999999999988876544 5553
No 365
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=46.42 E-value=25 Score=22.96 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.++.|+.+.=..
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5888888999999999999999986654
No 366
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=44.98 E-value=23 Score=25.48 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=24.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 36 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 36 (230)
.|.+ +.+|+.+.++++++.|+.++=+.....+|.
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgltg~ 38 (163)
T 1ffv_A 5 IITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGA 38 (163)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhcCCCccc
Confidence 4455 457999999999999999877664333333
No 367
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=44.83 E-value=54 Score=20.36 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.6
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
+.+..++++...+++.+..|+.+--.+..+.-++.++.+..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 456667888999999999999999999999889999988776
No 368
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=44.20 E-value=71 Score=21.55 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.5
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhc
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~ 135 (230)
.+-|+.+.||+++...|.++..++++.--.+| ++.....+.++++.
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 35588999999999999999999887654444 55444556666554
No 369
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=44.08 E-value=29 Score=25.05 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|.|.+ .++|+.+.+++++++|+.++=+..
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~~ 38 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALREV 38 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHHT
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 44555 457999999999999999877663
No 370
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=43.81 E-value=54 Score=29.28 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=40.2
Q ss_pred CCeeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCC-CCCeEEEe
Q 026932 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~ 121 (230)
..+.+.|...+|....+.+++.+|+.++-..|+.+.|+. .+..-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 457788889999999999999999999999999999964 45567765
No 371
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=43.28 E-value=41 Score=22.35 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=32.3
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCccccc
Q 026932 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
.+-|+.+.||+++...|....++++++-.+.| ++.....+.++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 35788899999999999999999997655555 4443333444443
No 372
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=43.27 E-value=28 Score=22.64 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.4
Q ss_pred EeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE-ecCc
Q 026932 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 124 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~ 124 (230)
+.|.|++..|=.++|+.++..+++.+...+-. ..|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 89999999999999999999999999887644 5554
No 373
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=43.27 E-value=35 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
|.+.|..++|....++|++.+|+.++=..|....|+...
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~ 302 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDR 302 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSC
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCccc
Confidence 457888999999999999999999999999999998753
No 374
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.24 E-value=47 Score=21.37 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHhHhCCCCCCeEEEe--cCcccCCCCchhhcccccCCceEEEE
Q 026932 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.+..+|+.+.++.+.++....+|.. .|.+++|+.-+... +..++.+++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL 77 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMIL 77 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEE
Confidence 3799999999999999766666663 58888877655543 244444443
No 375
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=43.23 E-value=22 Score=22.56 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.8
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
...+.|.|++..|=.++|+.+++.+++.+...+-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 45789999999999999999999999998877644
No 376
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=42.72 E-value=40 Score=22.88 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCccccc
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
+-|+.+.||+++...|....++++++-.++| ++.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 4689999999999999999999997655444 6654444555543
No 377
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=42.61 E-value=43 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.5
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCccccc
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
+-|+.+.||+++...|.+...+++++-.++| ++.....+.++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 5689999999999999999999997755555 5543344455543
No 378
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=41.86 E-value=40 Score=24.11 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=25.8
Q ss_pred CEEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCC
Q 026932 1 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 36 (230)
Q Consensus 1 m~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 36 (230)
|...|+ +.+|+.+.++++++.|+.++=+.....+|.
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~ 37 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGT 37 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTS
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHHcCCCccc
Confidence 443443 458999999999999999987765433333
No 379
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=41.65 E-value=52 Score=22.26 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=31.6
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCcccc
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~ 57 (230)
+-|+.+.||+++...|....++++++-.++| ++.....+.+++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 94 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMS 94 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHH
Confidence 4589999999999999999999986655444 554334444444
No 380
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=41.57 E-value=29 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=22.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|.|.+ ..+|+.+.++++|+.|+.++-+.
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~LR~ 31 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLLRE 31 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHHHT
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHHHH
Confidence 35566 46799999999999999997654
No 381
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=41.44 E-value=31 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=22.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|+..++++.+++|+.+.=..
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~ 35 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQ 35 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHH
Confidence 4666657899999999999999886554
No 382
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=40.03 E-value=72 Score=20.40 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred eeccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCccc-CCCCchhh
Q 026932 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLAD 134 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L-~d~~tL~~ 134 (230)
.+-|+.+.|++++...|.++..+++++--.+| ++.-+ ..+.++.+
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHH
Confidence 56788899999999999999999887655544 55433 44556544
No 383
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=39.93 E-value=67 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
|.|-..+|.+.++.|++..|..||-+.+....+++....
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 445567888999999999999999999999999876543
No 384
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=38.70 E-value=53 Score=22.11 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.9
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCcccccCccccc
Q 026932 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
+-|+.+.||+++...|....++++++-.+.| ++.....+.++++
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 4688899999999999999999997755555 4443333444443
No 385
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.15 E-value=34 Score=24.42 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.|+|+.|+..+|+.+..-.
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 368999999999999999999999999986543
No 386
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=37.87 E-value=90 Score=20.93 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=37.6
Q ss_pred eccCCcCcHHHHHHHHHhHhCCCCCCeEEEe-cCcccCCCCchhhccc---ccCCceEEEE
Q 026932 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
+-|+.+.||+++...|.++..++++.-..+| ++.....+.++++.-= .++..+++..
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAY 109 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEE
Confidence 4577788999999999999998887644444 5544455666665421 2344555544
No 387
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.21 E-value=43 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=25.7
Q ss_pred chHHHHHHHhchhhCCCCC--ceEEE--ECCeecCCCC
Q 026932 173 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGR 206 (230)
Q Consensus 173 ~tV~~LK~~i~~~~~i~~~--~~~l~--~~g~~L~d~~ 206 (230)
.+.++|+.+.+..++++.+ ...|+ .+|.+++|+.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEe 74 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDD 74 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechh
Confidence 4799999999999999653 34554 5788887664
No 388
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=37.15 E-value=77 Score=24.99 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=45.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-------CcccccCcccc----ccccccCCeEEEE
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA----DYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-------g~~l~d~~~l~----~~~i~~~~~i~l~ 70 (230)
|.|=..+|.+.++.|++++|+.||=+.+....+.+...-.-.+. -+.|.|+..+. .+....++.+.+.
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 34445678999999999999999998888888766544333332 15567765443 4455555565554
No 389
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=36.79 E-value=73 Score=24.57 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=33.9
Q ss_pred eeeEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCe
Q 026932 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q 117 (230)
+.+.|...+|....+.|+++.|..++-..+..+.+++.+..
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 34666677888889999999999999999999999766543
No 390
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.05 E-value=35 Score=21.68 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.8
Q ss_pred CcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
...+.|.|+...+=.++|+.++..+++.+...+-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 46789999999999999999999999998877654
No 391
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=35.89 E-value=43 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=21.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
.|++...+|+..++++.+++|+.+.=..
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~ 34 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQR 34 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 4555556899999999999999886544
No 392
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=35.86 E-value=38 Score=21.24 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+.+.-+..-|+.|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 5566778999999999998888777777654
No 393
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=35.79 E-value=45 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 4666657898899999999999887655
No 394
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=35.59 E-value=40 Score=23.67 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
+.+.+.|++.++=.++|+.|+..+++.+..-.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 68899999999999999999999999986533
No 395
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=35.30 E-value=50 Score=19.99 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.7
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEEe
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.+.+.-+.+.| .+.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 56889999999999988766555 555553
No 396
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=35.14 E-value=42 Score=23.80 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.++=.++|+.|+..+++.+..-.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 468999999999999999999999999986533
No 397
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=33.46 E-value=97 Score=20.18 Aligned_cols=85 Identities=6% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcH
Q 026932 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV 99 (230)
..=..++-+.+.+.+|.|++.+...+.. +..+. ++ ++ ..+-..+.|+...|.+.. - ...-+
T Consensus 17 ~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~---g~-------~~~~~~v~i~~~~g~~~e--q-k~~l~ 77 (115)
T 1uiz_A 17 DTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIMS-FG---DS-------TDPCAVCSLCSIGKIGGP--Q-NKSYT 77 (115)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-ET---TB-------CSSCEEEEEEESSCCSHH--H-HHHHH
T ss_pred HHHHHHHHHHHHHHHCcChhHEEEEEEC-----CcceE-EC---CC-------CCCeEEEEEEEecCCCHH--H-HHHHH
Confidence 3447788888999999999988877632 11111 10 11 122233444444433210 0 11235
Q ss_pred HHHHHHHHhHhCCCCCCeEEEecC
Q 026932 100 DNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 100 ~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
..+-+.+++..|+|+++..+.+..
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 78 KLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 666667888899999999887654
No 398
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=32.88 E-value=67 Score=20.56 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.1
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cC
Q 026932 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG 47 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g 47 (230)
-.+-|+.+.|++++...|.++.++++++-.+.| ++
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 347789999999999999999999987666555 54
No 399
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=32.76 E-value=61 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~ 29 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARD 29 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5777667898899999999999886544
No 400
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=32.41 E-value=66 Score=19.75 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.8
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEE
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+-.+.++
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~ 54 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQIN 54 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999888775533334444
No 401
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=32.01 E-value=57 Score=21.08 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=22.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~ 29 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVS 29 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5777667898899999999999886554
No 402
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=31.95 E-value=1e+02 Score=19.86 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=39.1
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeec-CCCCccccc----CCCCCCEEEEEEE
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY----NIQKESTLHLVLR 224 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L-~d~~tL~~~----~i~~g~~i~l~~~ 224 (230)
.-.+.|+.+.|+.++..-|.++..+. ...|+.++..+ ..+.++++. +. +| .+++...
T Consensus 29 k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kd-DG-fLyi~Ys 90 (96)
T 1wz3_A 29 QSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGF-DG-KLVVNYA 90 (96)
T ss_dssp CCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCB-TT-BEEEEEE
T ss_pred ccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCC-CC-EEEEEEe
Confidence 35678899999999999999998887 56665555343 556666554 33 44 4656553
No 403
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=30.55 E-value=53 Score=20.74 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
++|++...+| ..++++.+++|+.+.=..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3577766666 678999999999887665
No 404
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.92 E-value=71 Score=21.71 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=22.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~ 50 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIR 50 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5677667898899999999999886544
No 405
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=29.75 E-value=61 Score=20.70 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.6
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026932 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
++|+|..+.. +++.+++..-+-+..+=+++....++.++
T Consensus 6 YrITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~ 46 (88)
T 3cjl_A 6 YQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPE 46 (88)
T ss_dssp EEEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHH
T ss_pred EEEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHH
Confidence 3788886644 78999999999999999999888887753
No 406
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=29.53 E-value=66 Score=25.61 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=29.1
Q ss_pred CEEEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCC
Q 026932 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~~ 39 (230)
++|.|-.++|....++++. .+|+.++- +..|++..
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~ 42 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQE 42 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCcc
Confidence 4788989999999999999 99999993 34788753
No 407
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=29.03 E-value=75 Score=19.76 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=20.7
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEE
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+-.+.++
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p~~gpi~v~ 57 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAPMGDPIALR 57 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCSEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999888766533334444
No 408
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=35.14 E-value=12 Score=24.65 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=47.2
Q ss_pred cHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHH
Q 026932 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~ 101 (230)
....|++.|.+..+++++ .+.++..|.++|+.+=..+.+.......+.+.+... ++....||.+
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 456788888888887764 356666778888877777777766655544444211 1234568888
Q ss_pred HHHHHHhHh
Q 026932 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
|-..|.++.
T Consensus 91 l~~~I~~~~ 99 (103)
T 2lte_A 91 LFQLVEKHR 99 (103)
Confidence 877776553
No 409
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.95 E-value=45 Score=23.70 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026932 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
+.+.+.|+..++=.++|+.|+..+++.+..-.
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 121 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVN 121 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEE
Confidence 68999999999999999999999999986543
No 410
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=27.64 E-value=83 Score=20.75 Aligned_cols=86 Identities=9% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCc
Q 026932 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+...+.. +..+. ++-.. .+-..+.|+...|.+.. - ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~g~~----------~~~~~i~I~~~~g~~~e--q-k~~l 76 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRIT-HGASR----------NPVAVIKVESIGALSAD--D-NIRH 76 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCCC-BTTBC----------SSCEEEEEEESSCCCHH--H-HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccEE-EcCCC----------CCeEEEEEEEecCCCHH--H-HHHH
Confidence 44557888889999999999988877742 11111 12111 12223444444443211 0 1123
Q ss_pred HHHHHHHHHhHhCCCCCCeEEEecC
Q 026932 99 IDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+..+-+.+++..|+|+++..+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 77 TQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEE
Confidence 5666667888899999999887754
No 411
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=27.59 E-value=1.4e+02 Score=22.29 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=41.5
Q ss_pred cccccCCceEEEEEeecceeEEEEeecCceEEEE-eeccchHHHHHHHhchhhCCCCCceEEEECC
Q 026932 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~-v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g 199 (230)
.++..+..+++++.-.+.....++..+.+...+. .+..++..-+|+.+....+...+..+-...|
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pG 115 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPG 115 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETT
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCC
Confidence 5677888888888776667777776665566677 6778888888999888554333333333444
No 412
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.34 E-value=32 Score=25.36 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCc
Q 026932 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~ 40 (230)
.+.+.+.|++.++=.|+|+.|+..+|+.+..
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~k 161 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRK 161 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeE
Confidence 4689999999999999999999999999854
No 413
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=27.03 E-value=68 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+| ..++++.+++|+.+.=..
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 567765667 678899999999887655
No 414
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=26.34 E-value=94 Score=28.28 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=39.9
Q ss_pred eEEEEeeccchHHHHHHHhchhhC--CCCCc--------eEEEECCe--e------cCCCCcccccCCCCCCEEEEE
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q------LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~--i~~~~--------~~l~~~g~--~------L~d~~tL~~~~i~~g~~i~l~ 222 (230)
...+.++.+.|+.++-+.++.+.. +.... ..++|... . -.-.++|.++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456788888899999999988643 32211 24445421 1 123678999999999998774
No 415
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=25.25 E-value=51 Score=20.99 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+.+.-+..-|+.|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566678999999999888777777666654
No 416
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=25.13 E-value=1.3e+02 Score=18.66 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.5
Q ss_pred eEEEecCCcEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
+.+..++++.-.++|.+..|+.+--.+.-+..++.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 556678888889999999999998888888889988877665
No 417
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=24.61 E-value=1.3e+02 Score=23.34 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=34.8
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-------CcccccCcccc
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-------g~~l~d~~~l~ 57 (230)
|.|=..+|...++.|++++|+.||=+.+..+.+.+...-..++- -+.|.|+..+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 34445778899999999999999999988887765443333332 25667764443
No 418
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=24.33 E-value=1.1e+02 Score=18.84 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEE
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+-++.++
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap~ggPi~v~ 52 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECTTTCCEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCcEEEE
Confidence 46889999999999998776544334444
No 419
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.11 E-value=1.6e+02 Score=19.50 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCC-cCcHHH
Q 026932 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDN 101 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~-~~tV~~ 101 (230)
..++-+.+.+.+|.|.+.+...+.. +..+. ..++ ..+-..+.|+...|.+. +. ..-+..
T Consensus 20 ~~~l~~ala~~lgkPe~~~~V~~~~-----~~~~~----~gg~-------~dp~~~v~I~~~~g~t~----eqk~~l~~~ 79 (125)
T 2wkb_A 20 LSEIEDAISNILGKPVAYIMSNYDY-----QKNLR----FSGS-------NEGYCFVRLTSIGGINR----SNNSLLADK 79 (125)
T ss_dssp HHHHHHHHHHHHCSCCTTCEEEEEE-----CTTCE----ETTB-------CSSCEEEEEECC---------CTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEEc-----CCceE----eCCC-------CCCcEEEEEEECCCCCH----HHHHHHHHH
Confidence 4456666778899999988877652 11111 1111 12223344444443321 11 224667
Q ss_pred HHHHHHhHhCCCCCCeEEEecC
Q 026932 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 80 ITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHhCcCcceEEEEEEE
Confidence 7778888999999998877654
No 420
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=23.82 E-value=64 Score=20.07 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=28.2
Q ss_pred hHHHHHHHhchhhCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026932 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 174 tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 224 (230)
|-++.+ .+-+++++.+++...+ +..+--..+||.++|+.|.+..+
T Consensus 16 s~eEk~-~lL~~y~i~~~qLPrI-----~~~DPvar~~G~k~GdVvkI~R~ 60 (78)
T 1hmj_A 16 PKEEVE-EILKRYNIKIQQLPKI-----YEDDPVIQEIGAKEGDVVRVIRK 60 (78)
T ss_pred CHHHHH-HHHHHcCCCHHHCCee-----eCcCHhhHHhCCCCCCEEEEEEC
Confidence 334444 4445556766655443 33344467779999999998776
No 421
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=23.48 E-value=1e+02 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.+++|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (98)
T 1iue_A 5 ITLRTNDG-EKKIECNEDEYILDASER 30 (98)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCC-eEEEEeCCCCcHHHHHHH
Confidence 44444444 688999999999887655
No 422
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=23.41 E-value=2.2e+02 Score=20.90 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=47.0
Q ss_pred CCCCeEEEecCcccCCCCchhhcccccCCceEEEEEeecceeEEEEeecCceEEEEeec---cchHHHHHHHhchhh
Q 026932 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES---SDTIDNVKAKIQDKE 186 (230)
Q Consensus 113 ~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~---~~tV~~LK~~i~~~~ 186 (230)
|+-.-.|..+|...+.+-.+.+.++.+++... .+.+...+.|.+.-++..+..-.++. +.|..++.+++.+.+
T Consensus 2 PvvSTqLlLNGSLAEeeiiIRSeNit~NaKtI-IVqLn~sV~InCtRP~NNTRhCnis~~~Wn~tL~~V~~kL~e~f 77 (190)
T 4i3s_G 2 PVVSTQLLLNGSLAEKEIRIKSEDISDNAKNI-IVQLTKPVLINCARPSNNTQYCVVNRTQWNDTLGQVAIQLRKHW 77 (190)
T ss_dssp CCCCCSEEESSCCCSSSCEEECSCTTCTTSCE-EEEEEEEEEEEEEECSSSCCEEEECHHHHHHHHHHHHHHHTTTS
T ss_pred CEEechhhhehhhcCCceEEEEeccCCCceEE-EEEcCCceEEEEEecCCCeEEEEEeHHHhhhhHHHHHHHHHHhc
Confidence 34444567888877777778888888887543 23444457777765555555555553 457777777776654
No 423
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=23.39 E-value=53 Score=21.27 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEEeeccchHHHHHHHhchhhCCCCCceEEEECCeecCCCCcc-cccCC
Q 026932 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNI 213 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~~~g~~L~d~~tL-~~~~i 213 (230)
.+.+..++.+....+++.+++..+++++. +.++.+| .++|+
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGl 58 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGA 58 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCC
Confidence 46677778888999999999999887653 3455555 55554
No 424
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=22.91 E-value=92 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+|....+++.+++|+.+.=..
T Consensus 7 v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 7 ITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 455444577888999999999887655
No 425
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=22.58 E-value=31 Score=21.23 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCcHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcH
Q 026932 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV 99 (230)
..+...+++.+.+..|+++... -..+.++..+.++|+.+=..+.+.......+.+.+.. -.+....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~~-----~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~-------~~~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGTD-----LSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPD-------DVAGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCC-----TTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCT-------TTTTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCcccc-----cccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCH-------HHHHcCCCH
Confidence 4578899999999999987410 0134566667888887666666655544443332211 112345689
Q ss_pred HHHHHHHHhHh
Q 026932 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..+.++.
T Consensus 72 ~~l~~~i~~~~ 82 (86)
T 1af8_A 72 RELLDLINGAL 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888877653
No 426
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=22.55 E-value=95 Score=19.44 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
+|++...+| ...+++.+++|+.+.=..-. .+|..
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g---~i~~~ 36 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSEKA---DLPLS 36 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHHHS---CCCCS
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHHCc---CCCCC
Confidence 466655555 78899999999998766643 45543
No 427
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=22.50 E-value=91 Score=24.77 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCeeeEEEecCCcEEeeccCC--cCcHHHHHHHHHhHhCCCCC---CeEEEecC
Q 026932 75 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIFAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~~~---~q~L~~~g 123 (230)
+.+++.|...+|....++++. ++|+.++- +..|++.. ..-|.+..
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~ 53 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICS 53 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEEC
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEEC
Confidence 346788889999999999998 99999993 44677643 35666533
No 428
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=22.19 E-value=74 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHhHhCCCCC--CeEEE--ecCcccCCCCchhhc
Q 026932 97 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADY 135 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~--~q~L~--~~g~~L~d~~tL~~~ 135 (230)
.+..+|+.+.+++++++.. ..+|. ..|.+++|+.-+...
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL 124 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC
Confidence 4799999999999999763 55665 468888877655543
No 429
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=22.13 E-value=1.1e+02 Score=19.22 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=18.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.+++|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 5 VTLVTPTG-NVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCc-eEEEEeCCCCcHHHHHHH
Confidence 44433444 788999999999887655
No 430
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=21.29 E-value=1.8e+02 Score=19.14 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEeecCceEEEEeeccchHHHHHHHhchhhCCCCCceEEE
Q 026932 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~~~l~ 196 (230)
+.+..++++...++|.+..|+.+--.+.-+.-++.++.+..+
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 566678888999999999999999888888889999888776
No 431
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=21.04 E-value=52 Score=19.67 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.0
Q ss_pred CcccccCCCCCCEEEEEEEe
Q 026932 206 RTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 206 ~tL~~~~i~~g~~i~l~~~~ 225 (230)
+-|.++|+.+|+.|.+.-+.
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~ 44 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIA 44 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECC
T ss_pred HHHHHcCCCCCCEEEEEEEC
Confidence 45788899999999887764
No 432
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.93 E-value=1.1e+02 Score=19.93 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCC-cCcHHH
Q 026932 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDN 101 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~-~~tV~~ 101 (230)
..++-+.+.+.+|.|++.+...+. ++..+. + .++ ..+-..+.|+...|.+ .+. ..-+..
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~-~---~g~-------~~~~~~v~i~~~~g~t----~eqk~~l~~~ 79 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT-F---SGN-------TEPTCYVEVKSIGALD----GSRTQEVSEL 79 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC-B---TTB-------CSSCEEEEEEESSCCC----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE-E---CCC-------CCcEEEEEEEEecCCC----HHHHHHHHHH
Confidence 556666777889999998877753 221111 1 111 1222334444433332 111 224566
Q ss_pred HHHHHHhHhCCCCCCeEEEecC
Q 026932 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHhCcCcccEEEEEEE
Confidence 7778888899999999887754
No 433
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=20.86 E-value=51 Score=21.29 Aligned_cols=28 Identities=4% Similarity=0.173 Sum_probs=22.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026932 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
.|++...+|...++++.+++|+.+.=..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~ 29 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQ 29 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5677567888889999999999886544
No 434
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=20.71 E-value=2.6e+02 Score=22.98 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=37.4
Q ss_pred ecCceEEEEeeccchHHHHHHHhc--hhhCC---CCCceEEEEC----C--eecCCCCccccc
Q 026932 160 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA----G--KQLEDGRTLADY 211 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~--~~~~i---~~~~~~l~~~----g--~~L~d~~tL~~~ 211 (230)
.+|+...+.+++++||.++-..|+ .+.|+ .++.+-|.+. + .-|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 667788999999999999999998 56675 3344555431 2 456777777663
No 435
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.56 E-value=79 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.4
Q ss_pred cEEeeccCCcCcHHHHHHHHHhHhCCCCCCeEEE
Q 026932 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.|.|+...+=.++|+.|+..+++.+...+-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5789999999999999999999999998887543
No 436
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=20.48 E-value=71 Score=26.13 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=40.1
Q ss_pred EEecCCc----EEeeccCCcCcHHHHHHHHHhHhCCCC-CCeEEEec----C--cccCCCCchhhc
Q 026932 81 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA----G--KQLEDGRTLADY 135 (230)
Q Consensus 81 v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~----g--~~L~d~~tL~~~ 135 (230)
|...+|. ...+.+++++|+.++-..++++.|+.. +..-|.+. | .-|+.++++.+-
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4445666 889999999999999999999999843 33566652 1 136777777653
No 437
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=20.47 E-value=78 Score=18.91 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=20.6
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEEe
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.|.+.-+.+.+-.+.++.
T Consensus 24 ~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v 53 (75)
T 2gcx_A 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIET 53 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 468889999999998876554333444443
No 438
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.39 E-value=1.8e+02 Score=18.57 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=34.1
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026932 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
|.||.. .|+.+.+++..=-...+|.+++...+|-+. -|+|-+
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~n 47 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMN 47 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEEC
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEec
Confidence 556653 688999999999999999999999999876 355544
No 439
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.39 E-value=1.8e+02 Score=18.68 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=47.8
Q ss_pred cHHHHHHHhhhhhCCCCCceeEEecCcccccCccccccccccCCeEEEEEEecCCeeeEEEecCCcEEeeccCCcCcHHH
Q 026932 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~ 101 (230)
=..++-+.+.+.+|.|.+.+...+.. +..+. + .++ ..+-..+.|+...|.+.. - ...-+..
T Consensus 18 l~~~l~~~l~~~l~kPe~~~~v~~~~-----~~~~~-~---~g~-------~~~~~~i~i~~~~g~~~e--q-k~~l~~~ 78 (113)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINT-----DQQLS-F---GGS-------TNPAAFGTLMSIGGIEPS--R-NRDHSAK 78 (113)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-E---TTB-------CSSCEEEEEEESSSCSHH--H-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHEEEEEeC-----CccEE-e---cCC-------CCCeEEEEEEEecCCCHH--H-HHHHHHH
Confidence 36778888889999999988777632 11111 1 111 122233444444433210 0 1123566
Q ss_pred HHHHHHhHhCCCCCCeEEEecC
Q 026932 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHhCcCcCeEEEEEEE
Confidence 6667888899999998887654
No 440
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.18 E-value=1.4e+02 Score=19.46 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=20.7
Q ss_pred CchhhcccccCCceEEEEEeecceeEEEE
Q 026932 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
..|.+.|+.+|+.|.+.-+.+.+-.+.++
T Consensus 25 rrL~~lGl~pG~~V~Vv~~~P~ggpi~V~ 53 (105)
T 2k5f_A 25 RRLMDLGLVRGAKLKVLRFAPLGDPIEVN 53 (105)
T ss_dssp HHHHHHTCSTTCEEEEEEECSSSCSEEEE
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 36889999999999988775433334444
Done!