Query 026933
Match_columns 230
No_of_seqs 313 out of 2261
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 1.6E-20 3.4E-25 130.0 10.3 96 57-152 8-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 2.6E-20 5.6E-25 128.9 10.0 95 134-228 9-103 (103)
3 cd01807 GDX_N ubiquitin-like d 99.8 1.2E-20 2.6E-25 123.7 7.8 73 1-73 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.8 1.2E-19 2.5E-24 119.7 8.3 75 1-75 1-75 (76)
5 cd01797 NIRF_N amino-terminal 99.8 1.2E-19 2.6E-24 119.5 7.9 75 1-75 1-77 (78)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 1.4E-19 3.1E-24 118.5 8.1 73 1-75 1-73 (74)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 4.5E-19 9.8E-24 115.0 7.4 70 1-70 2-71 (73)
8 cd01807 GDX_N ubiquitin-like d 99.8 6.5E-19 1.4E-23 115.4 7.1 73 77-149 1-73 (74)
9 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.4E-18 3.1E-23 114.5 8.7 75 1-75 1-75 (76)
10 cd01803 Ubiquitin Ubiquitin. U 99.8 1.2E-18 2.6E-23 114.9 8.3 75 1-75 1-75 (76)
11 cd01804 midnolin_N Ubiquitin-l 99.8 1.5E-18 3.3E-23 114.5 8.1 75 1-76 2-76 (78)
12 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.3E-18 2.7E-23 114.0 7.5 72 3-74 1-72 (74)
13 cd01793 Fubi Fubi ubiquitin-li 99.8 1.5E-18 3.3E-23 113.6 7.9 74 153-228 1-74 (74)
14 cd01805 RAD23_N Ubiquitin-like 99.8 4E-18 8.7E-23 112.6 8.5 73 1-73 1-75 (77)
15 cd01809 Scythe_N Ubiquitin-lik 99.8 3.3E-18 7.1E-23 111.6 7.7 72 1-72 1-72 (72)
16 cd01794 DC_UbP_C dendritic cel 99.8 2.3E-18 4.9E-23 111.0 6.7 68 4-71 2-69 (70)
17 PTZ00044 ubiquitin; Provisiona 99.8 3.9E-18 8.4E-23 112.4 7.9 76 153-228 1-76 (76)
18 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.3E-18 7.2E-23 112.0 7.3 74 155-228 1-74 (74)
19 cd01797 NIRF_N amino-terminal 99.8 4E-18 8.7E-23 112.2 7.7 75 77-151 1-77 (78)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 7.9E-18 1.7E-22 109.2 7.9 71 77-147 2-72 (73)
21 cd01804 midnolin_N Ubiquitin-l 99.7 8.8E-18 1.9E-22 110.9 8.0 77 76-153 1-77 (78)
22 cd01798 parkin_N amino-termina 99.7 5E-18 1.1E-22 110.0 6.7 70 3-72 1-70 (70)
23 cd01803 Ubiquitin Ubiquitin. U 99.7 1.1E-17 2.5E-22 110.2 7.9 76 153-228 1-76 (76)
24 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.7E-17 3.6E-22 109.4 8.4 76 153-228 1-76 (76)
25 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.5E-17 3.3E-22 110.4 7.3 73 1-73 3-77 (80)
26 cd01794 DC_UbP_C dendritic cel 99.7 2E-17 4.4E-22 106.6 6.6 68 80-147 2-69 (70)
27 KOG0003 Ubiquitin/60s ribosoma 99.7 9.9E-19 2.1E-23 116.7 0.5 76 1-76 1-76 (128)
28 cd01805 RAD23_N Ubiquitin-like 99.7 6.7E-17 1.5E-21 106.8 7.8 73 77-149 1-75 (77)
29 cd01798 parkin_N amino-termina 99.7 4.2E-17 9.1E-22 105.6 6.5 70 79-148 1-70 (70)
30 cd01808 hPLIC_N Ubiquitin-like 99.7 6.5E-17 1.4E-21 105.0 7.4 71 1-72 1-71 (71)
31 PF00240 ubiquitin: Ubiquitin 99.7 6.8E-17 1.5E-21 104.4 7.3 68 6-73 1-68 (69)
32 KOG0004 Ubiquitin/40S ribosoma 99.7 1.7E-17 3.7E-22 119.0 4.7 76 1-76 1-76 (156)
33 cd01796 DDI1_N DNA damage indu 99.7 5.6E-17 1.2E-21 105.1 6.5 68 3-70 1-70 (71)
34 KOG0005 Ubiquitin-like protein 99.7 3.7E-17 8.1E-22 97.3 4.3 70 1-70 1-70 (70)
35 cd01809 Scythe_N Ubiquitin-lik 99.7 1.3E-16 2.8E-21 104.0 7.1 71 77-147 1-71 (72)
36 PF00240 ubiquitin: Ubiquitin 99.7 1.7E-16 3.8E-21 102.5 7.4 69 158-226 1-69 (69)
37 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.9E-16 4.2E-21 105.1 7.7 73 77-149 3-77 (80)
38 cd01800 SF3a120_C Ubiquitin-li 99.7 1.4E-16 3.1E-21 104.7 6.7 69 161-229 6-74 (76)
39 cd01812 BAG1_N Ubiquitin-like 99.7 2.8E-16 6.1E-21 102.1 7.3 70 1-71 1-70 (71)
40 cd01800 SF3a120_C Ubiquitin-li 99.7 2.4E-16 5.3E-21 103.6 6.7 68 8-75 5-72 (76)
41 cd01808 hPLIC_N Ubiquitin-like 99.6 5.1E-16 1.1E-20 100.7 6.8 71 77-148 1-71 (71)
42 cd01790 Herp_N Homocysteine-re 99.6 7.5E-16 1.6E-20 100.4 6.5 71 1-71 2-78 (79)
43 cd01796 DDI1_N DNA damage indu 99.6 7.1E-16 1.5E-20 99.9 6.2 68 79-146 1-70 (71)
44 cd01790 Herp_N Homocysteine-re 99.6 1.8E-15 3.8E-20 98.6 7.2 71 77-147 2-78 (79)
45 KOG0005 Ubiquitin-like protein 99.6 4.7E-16 1E-20 92.6 4.0 70 77-146 1-70 (70)
46 cd01813 UBP_N UBP ubiquitin pr 99.6 2.2E-15 4.7E-20 98.2 7.0 69 1-70 1-72 (74)
47 cd01763 Sumo Small ubiquitin-r 99.6 4.4E-15 9.6E-20 100.0 8.8 78 151-228 10-87 (87)
48 cd01812 BAG1_N Ubiquitin-like 99.6 3.6E-15 7.8E-20 96.8 6.7 69 77-146 1-69 (71)
49 cd01763 Sumo Small ubiquitin-r 99.6 9.4E-15 2E-19 98.4 8.8 79 74-152 9-87 (87)
50 cd01813 UBP_N UBP ubiquitin pr 99.6 5.6E-15 1.2E-19 96.2 6.8 68 78-146 2-72 (74)
51 KOG0003 Ubiquitin/60s ribosoma 99.6 2E-16 4.3E-21 105.7 -0.1 76 154-229 2-77 (128)
52 smart00213 UBQ Ubiquitin homol 99.6 5.8E-15 1.2E-19 93.8 6.4 64 1-65 1-64 (64)
53 KOG0004 Ubiquitin/40S ribosoma 99.5 2.9E-15 6.2E-20 107.7 3.6 77 77-153 1-77 (156)
54 cd01799 Hoil1_N Ubiquitin-like 99.5 1.8E-14 3.8E-19 94.0 6.3 69 2-71 2-74 (75)
55 TIGR00601 rad23 UV excision re 99.5 4.8E-14 1E-18 118.5 7.9 73 1-73 1-76 (378)
56 smart00213 UBQ Ubiquitin homol 99.5 8.9E-14 1.9E-18 88.2 6.2 64 77-141 1-64 (64)
57 cd01795 USP48_C USP ubiquitin- 99.5 8.8E-14 1.9E-18 92.4 5.9 61 12-72 16-77 (107)
58 cd01799 Hoil1_N Ubiquitin-like 99.5 2.1E-13 4.6E-18 88.9 6.6 65 82-147 8-74 (75)
59 TIGR00601 rad23 UV excision re 99.4 2.9E-13 6.2E-18 113.9 7.4 74 77-150 1-77 (378)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 2.1E-13 4.6E-18 87.6 5.0 53 95-147 19-74 (75)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 3.5E-13 7.6E-18 86.6 4.6 52 20-71 20-74 (75)
62 cd01769 UBL Ubiquitin-like dom 99.4 2E-12 4.3E-17 83.2 7.1 68 4-71 1-68 (69)
63 cd01814 NTGP5 Ubiquitin-like N 99.4 1.6E-12 3.4E-17 89.2 5.7 75 76-150 4-92 (113)
64 cd01769 UBL Ubiquitin-like dom 99.3 3.8E-12 8.2E-17 81.9 6.9 67 81-147 2-68 (69)
65 cd01814 NTGP5 Ubiquitin-like N 99.3 1.2E-12 2.6E-17 89.8 4.4 73 2-74 6-92 (113)
66 cd01795 USP48_C USP ubiquitin- 99.3 5.1E-12 1.1E-16 84.1 5.7 61 88-148 16-77 (107)
67 PF11976 Rad60-SLD: Ubiquitin- 99.3 9.6E-12 2.1E-16 80.9 6.8 71 77-147 1-72 (72)
68 KOG0010 Ubiquitin-like protein 99.3 5.1E-12 1.1E-16 106.8 6.5 74 76-150 15-88 (493)
69 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.1E-11 2.3E-16 80.6 6.6 71 1-71 1-72 (72)
70 KOG0011 Nucleotide excision re 99.3 8.4E-12 1.8E-16 100.4 6.8 74 1-74 1-76 (340)
71 KOG0010 Ubiquitin-like protein 99.2 1.1E-11 2.5E-16 104.7 6.4 73 1-74 16-88 (493)
72 cd01788 ElonginB Ubiquitin-lik 99.2 5.2E-11 1.1E-15 81.3 6.7 73 1-73 1-81 (119)
73 KOG0011 Nucleotide excision re 99.2 3.3E-11 7.2E-16 97.0 6.5 74 77-150 1-76 (340)
74 cd01789 Alp11_N Ubiquitin-like 99.2 1.3E-10 2.8E-15 77.6 7.7 70 2-71 3-80 (84)
75 cd01811 OASL_repeat1 2'-5' oli 99.2 2E-10 4.4E-15 72.1 7.4 71 1-72 1-76 (80)
76 PF14560 Ubiquitin_2: Ubiquiti 99.1 6.6E-10 1.4E-14 74.9 7.6 69 2-70 3-81 (87)
77 cd01789 Alp11_N Ubiquitin-like 99.1 7E-10 1.5E-14 74.1 7.5 69 155-223 4-80 (84)
78 cd01788 ElonginB Ubiquitin-lik 99.0 8.3E-10 1.8E-14 75.5 6.8 69 162-230 11-86 (119)
79 KOG0001 Ubiquitin and ubiquiti 99.0 2.1E-09 4.6E-14 69.5 8.2 72 3-74 2-73 (75)
80 PLN02560 enoyl-CoA reductase 99.0 1.2E-09 2.6E-14 89.9 7.7 70 1-70 1-81 (308)
81 PF14560 Ubiquitin_2: Ubiquiti 99.0 2.9E-09 6.3E-14 71.7 7.5 69 154-222 3-81 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.9 1E-08 2.2E-13 71.7 7.5 73 77-149 3-89 (111)
83 PLN02560 enoyl-CoA reductase 98.8 1E-08 2.2E-13 84.5 7.4 70 77-146 1-81 (308)
84 KOG0001 Ubiquitin and ubiquiti 98.8 3.4E-08 7.3E-13 63.7 8.5 72 156-227 3-74 (75)
85 KOG4248 Ubiquitin-like protein 98.8 8.1E-09 1.7E-13 94.2 5.7 74 2-76 4-77 (1143)
86 KOG4248 Ubiquitin-like protein 98.7 1.2E-08 2.6E-13 93.1 5.3 77 78-155 4-80 (1143)
87 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.1E-07 2.4E-12 66.5 8.7 72 154-225 4-89 (111)
88 PF11543 UN_NPL4: Nuclear pore 98.7 2.8E-08 6.2E-13 65.4 4.7 70 152-222 4-78 (80)
89 cd01801 Tsc13_N Ubiquitin-like 98.7 7.8E-08 1.7E-12 63.1 6.3 68 2-69 2-74 (77)
90 cd01801 Tsc13_N Ubiquitin-like 98.7 9.8E-08 2.1E-12 62.7 6.6 52 94-145 20-74 (77)
91 PF11543 UN_NPL4: Nuclear pore 98.5 3.1E-07 6.7E-12 60.5 6.4 69 1-70 5-78 (80)
92 KOG3493 Ubiquitin-like protein 98.5 2.6E-08 5.6E-13 60.7 1.0 69 155-223 4-72 (73)
93 cd00196 UBQ Ubiquitin-like pro 98.5 5.6E-07 1.2E-11 55.8 6.6 67 5-71 2-68 (69)
94 KOG4495 RNA polymerase II tran 98.5 2.6E-07 5.6E-12 61.0 4.4 64 1-64 1-67 (110)
95 cd01811 OASL_repeat1 2'-5' oli 98.5 1.2E-06 2.6E-11 55.2 6.9 70 77-147 1-75 (80)
96 KOG1769 Ubiquitin-like protein 98.4 3.1E-06 6.6E-11 56.8 8.5 77 153-229 21-97 (99)
97 cd00196 UBQ Ubiquitin-like pro 98.4 1.4E-06 3.1E-11 53.9 6.6 63 84-146 5-67 (69)
98 KOG1769 Ubiquitin-like protein 98.4 3.6E-06 7.8E-11 56.5 8.2 79 75-153 19-97 (99)
99 KOG3493 Ubiquitin-like protein 98.2 6.3E-07 1.4E-11 54.7 1.0 69 78-146 3-71 (73)
100 KOG0006 E3 ubiquitin-protein l 98.2 2.4E-06 5.3E-11 68.8 4.5 63 87-149 14-77 (446)
101 KOG1872 Ubiquitin-specific pro 98.1 7.1E-06 1.5E-10 69.7 6.2 67 7-73 9-76 (473)
102 KOG0006 E3 ubiquitin-protein l 98.1 6.6E-06 1.4E-10 66.4 5.6 73 1-73 1-77 (446)
103 PF11470 TUG-UBL1: GLUT4 regul 98.1 1.1E-05 2.5E-10 50.6 5.2 63 159-221 3-65 (65)
104 KOG4495 RNA polymerase II tran 97.8 2.6E-05 5.5E-10 51.7 4.1 55 85-139 10-66 (110)
105 PF11470 TUG-UBL1: GLUT4 regul 97.8 7.6E-05 1.6E-09 46.9 5.9 63 83-145 3-65 (65)
106 KOG1872 Ubiquitin-specific pro 97.7 8.8E-05 1.9E-09 63.2 5.9 66 160-225 10-76 (473)
107 PF08817 YukD: WXG100 protein 97.6 0.00023 4.9E-09 46.8 6.1 68 2-69 4-78 (79)
108 COG5227 SMT3 Ubiquitin-like pr 97.6 6.3E-05 1.4E-09 49.3 3.0 77 153-229 25-101 (103)
109 PF08817 YukD: WXG100 protein 97.5 0.00029 6.2E-09 46.3 5.5 67 155-221 5-78 (79)
110 PF00789 UBX: UBX domain; Int 97.5 0.0013 2.8E-08 43.5 8.1 69 153-221 7-80 (82)
111 PF13019 Telomere_Sde2: Telome 97.4 0.0012 2.5E-08 49.0 8.2 62 1-62 1-70 (162)
112 smart00166 UBX Domain present 97.4 0.0013 2.9E-08 43.3 7.6 70 76-145 4-78 (80)
113 smart00166 UBX Domain present 97.3 0.0013 2.8E-08 43.3 6.7 69 153-221 5-78 (80)
114 PF00789 UBX: UBX domain; Int 97.3 0.0025 5.5E-08 42.0 7.9 69 2-70 8-81 (82)
115 PF10302 DUF2407: DUF2407 ubiq 97.3 0.00088 1.9E-08 45.7 5.6 48 89-136 14-65 (97)
116 PF13019 Telomere_Sde2: Telome 97.3 0.0017 3.6E-08 48.2 7.5 76 153-228 1-88 (162)
117 COG5227 SMT3 Ubiquitin-like pr 97.3 0.00032 7E-09 46.0 3.1 75 75-149 23-97 (103)
118 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0039 8.4E-08 40.9 7.3 68 2-69 6-77 (79)
119 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0038 8.3E-08 40.9 7.0 68 153-221 5-77 (79)
120 cd01770 p47_UBX p47-like ubiqu 97.1 0.0045 9.7E-08 40.6 7.2 66 76-141 4-73 (79)
121 cd01773 Faf1_like1_UBX Faf1 ik 97.0 0.007 1.5E-07 39.8 7.6 70 76-146 5-79 (82)
122 cd01767 UBX UBX (ubiquitin reg 97.0 0.007 1.5E-07 39.4 7.7 63 2-64 4-70 (77)
123 cd01767 UBX UBX (ubiquitin reg 97.0 0.0074 1.6E-07 39.3 7.7 64 77-141 3-71 (77)
124 cd01774 Faf1_like2_UBX Faf1 ik 97.0 0.0078 1.7E-07 40.1 7.7 69 76-145 4-82 (85)
125 cd01773 Faf1_like1_UBX Faf1 ik 96.9 0.0068 1.5E-07 39.9 7.1 70 153-223 6-80 (82)
126 cd01771 Faf1_UBX Faf1 UBX doma 96.9 0.011 2.3E-07 38.9 7.8 71 75-146 3-78 (80)
127 KOG0013 Uncharacterized conser 96.9 0.0022 4.9E-08 49.1 5.1 64 9-72 155-218 (231)
128 cd01770 p47_UBX p47-like ubiqu 96.9 0.0074 1.6E-07 39.6 7.0 64 2-65 6-73 (79)
129 cd01771 Faf1_UBX Faf1 UBX doma 96.9 0.0086 1.9E-07 39.4 7.2 70 152-222 4-78 (80)
130 KOG1639 Steroid reductase requ 96.8 0.0026 5.7E-08 50.0 5.1 69 1-69 1-76 (297)
131 PF14533 USP7_C2: Ubiquitin-sp 96.8 0.011 2.3E-07 46.6 8.6 101 12-114 35-160 (213)
132 PRK06437 hypothetical protein; 96.6 0.023 5E-07 36.0 7.6 63 157-229 5-67 (67)
133 COG5417 Uncharacterized small 96.6 0.01 2.2E-07 37.6 5.6 68 78-145 8-80 (81)
134 PF10302 DUF2407: DUF2407 ubiq 96.5 0.006 1.3E-07 41.6 4.8 49 164-212 13-65 (97)
135 cd01774 Faf1_like2_UBX Faf1 ik 96.4 0.029 6.2E-07 37.4 7.4 67 2-69 6-82 (85)
136 KOG1639 Steroid reductase requ 96.2 0.014 3E-07 46.1 5.6 69 77-145 1-76 (297)
137 KOG0013 Uncharacterized conser 96.1 0.0096 2.1E-07 45.7 4.5 63 161-223 155-217 (231)
138 PF14533 USP7_C2: Ubiquitin-sp 96.1 0.065 1.4E-06 42.2 9.1 102 87-190 34-160 (213)
139 COG5417 Uncharacterized small 95.9 0.072 1.6E-06 33.9 6.9 67 155-221 9-80 (81)
140 PF12436 USP7_ICP0_bdg: ICP0-b 95.9 0.097 2.1E-06 42.3 9.6 107 90-196 88-223 (249)
141 PF09379 FERM_N: FERM N-termin 95.8 0.065 1.4E-06 34.9 7.0 68 157-224 1-75 (80)
142 PRK06437 hypothetical protein; 95.5 0.15 3.3E-06 32.2 7.4 62 1-71 1-62 (67)
143 KOG3206 Alpha-tubulin folding 95.4 0.057 1.2E-06 41.5 6.0 59 165-223 15-80 (234)
144 KOG3206 Alpha-tubulin folding 95.4 0.07 1.5E-06 41.0 6.5 61 89-149 15-82 (234)
145 PF10790 DUF2604: Protein of U 95.3 0.09 1.9E-06 32.4 5.4 68 161-228 4-75 (76)
146 PF15044 CLU_N: Mitochondrial 95.2 0.04 8.6E-07 35.8 4.2 58 169-226 1-60 (76)
147 PF11620 GABP-alpha: GA-bindin 95.1 0.17 3.8E-06 33.1 6.8 61 165-225 5-65 (88)
148 cd06406 PB1_P67 A PB1 domain i 95.0 0.12 2.6E-06 33.7 5.8 38 88-125 12-49 (80)
149 PF15044 CLU_N: Mitochondrial 94.8 0.064 1.4E-06 34.8 4.3 57 93-149 1-59 (76)
150 cd06407 PB1_NLP A PB1 domain i 94.8 0.17 3.6E-06 33.4 6.2 45 1-46 1-46 (82)
151 PF12436 USP7_ICP0_bdg: ICP0-b 94.6 0.17 3.7E-06 40.8 7.3 106 15-120 89-223 (249)
152 PF09379 FERM_N: FERM N-termin 94.3 0.35 7.6E-06 31.4 7.2 62 5-66 1-69 (80)
153 cd06409 PB1_MUG70 The MUG70 pr 94.2 0.16 3.4E-06 33.8 5.2 44 79-122 3-49 (86)
154 KOG4583 Membrane-associated ER 94.0 0.029 6.3E-07 46.2 1.7 63 76-138 9-75 (391)
155 PF14836 Ubiquitin_3: Ubiquiti 94.0 0.48 1E-05 31.6 7.1 65 163-228 14-84 (88)
156 cd00754 MoaD Ubiquitin domain 94.0 0.23 4.9E-06 32.3 5.7 60 164-228 17-80 (80)
157 PRK08364 sulfur carrier protei 94.0 0.85 1.9E-05 29.0 8.2 56 164-228 15-70 (70)
158 PF11620 GABP-alpha: GA-bindin 93.8 0.33 7.2E-06 31.8 5.9 61 12-72 4-64 (88)
159 cd06406 PB1_P67 A PB1 domain i 93.5 0.31 6.8E-06 31.8 5.4 36 12-47 12-47 (80)
160 PF14836 Ubiquitin_3: Ubiquiti 93.3 0.63 1.4E-05 31.0 6.8 63 87-150 14-82 (88)
161 cd00754 MoaD Ubiquitin domain 93.1 0.29 6.4E-06 31.7 5.1 59 88-151 17-79 (80)
162 cd00565 ThiS ThiaminS ubiquiti 93.0 0.68 1.5E-05 28.8 6.4 58 166-228 8-65 (65)
163 cd06409 PB1_MUG70 The MUG70 pr 92.7 0.52 1.1E-05 31.3 5.7 37 3-39 3-39 (86)
164 cd06407 PB1_NLP A PB1 domain i 92.6 0.76 1.6E-05 30.3 6.4 41 84-124 7-48 (82)
165 PRK08364 sulfur carrier protei 92.5 1 2.2E-05 28.6 6.8 64 77-150 5-68 (70)
166 smart00666 PB1 PB1 domain. Pho 92.5 0.66 1.4E-05 30.2 6.1 45 2-47 3-47 (81)
167 TIGR01683 thiS thiamine biosyn 92.3 0.94 2E-05 28.1 6.4 57 167-228 8-64 (64)
168 cd01760 RBD Ubiquitin-like dom 92.2 0.7 1.5E-05 29.6 5.7 44 156-199 3-46 (72)
169 PF10790 DUF2604: Protein of U 92.1 0.69 1.5E-05 28.6 5.2 65 84-148 3-71 (76)
170 PLN02799 Molybdopterin synthas 92.1 0.52 1.1E-05 30.9 5.3 68 1-73 2-79 (82)
171 PRK06488 sulfur carrier protei 92.0 1.3 2.8E-05 27.6 6.7 60 161-228 6-65 (65)
172 KOG2086 Protein tyrosine phosp 91.8 0.43 9.2E-06 40.4 5.5 68 75-142 304-375 (380)
173 smart00666 PB1 PB1 domain. Pho 91.5 0.99 2.2E-05 29.3 6.1 44 79-123 4-47 (81)
174 PRK06488 sulfur carrier protei 91.5 1.1 2.4E-05 27.9 6.1 59 85-151 6-64 (65)
175 PF14453 ThiS-like: ThiS-like 91.4 0.85 1.8E-05 27.7 5.1 54 1-70 1-54 (57)
176 cd01760 RBD Ubiquitin-like dom 91.2 0.79 1.7E-05 29.4 5.2 45 3-47 2-46 (72)
177 smart00455 RBD Raf-like Ras-bi 91.1 0.64 1.4E-05 29.6 4.6 44 80-123 3-46 (70)
178 KOG4250 TANK binding protein k 90.7 0.78 1.7E-05 41.9 6.3 45 7-51 321-365 (732)
179 KOG4598 Putative ubiquitin-spe 90.6 0.96 2.1E-05 41.4 6.7 178 12-196 878-1105(1203)
180 PF12754 Blt1: Cell-cycle cont 90.5 0.077 1.7E-06 43.5 0.0 58 172-229 103-182 (309)
181 PF02597 ThiS: ThiS family; I 90.4 1.3 2.8E-05 28.3 5.8 63 164-228 13-77 (77)
182 KOG4583 Membrane-associated ER 90.4 0.11 2.4E-06 42.9 0.8 61 152-212 9-73 (391)
183 cd06408 PB1_NoxR The PB1 domai 90.3 1.8 3.9E-05 28.8 6.2 35 3-37 3-38 (86)
184 smart00455 RBD Raf-like Ras-bi 90.2 1.2 2.6E-05 28.4 5.3 44 4-47 3-46 (70)
185 PRK07440 hypothetical protein; 90.0 2.1 4.6E-05 27.2 6.3 57 167-228 14-70 (70)
186 KOG2982 Uncharacterized conser 89.8 0.69 1.5E-05 38.3 4.8 58 166-223 351-416 (418)
187 smart00295 B41 Band 4.1 homolo 89.8 3.1 6.8E-05 31.9 8.6 73 152-224 3-83 (207)
188 PF02196 RBD: Raf-like Ras-bin 89.6 3.8 8.2E-05 26.1 7.9 52 155-206 3-56 (71)
189 PRK05659 sulfur carrier protei 89.5 2.4 5.3E-05 26.3 6.4 58 166-228 9-66 (66)
190 PLN02799 Molybdopterin synthas 89.2 1.6 3.5E-05 28.4 5.6 61 163-228 19-82 (82)
191 PRK06083 sulfur carrier protei 89.2 2.3 4.9E-05 28.2 6.2 61 161-228 24-84 (84)
192 PRK05863 sulfur carrier protei 89.1 2.1 4.6E-05 26.6 5.8 60 161-228 6-65 (65)
193 TIGR01682 moaD molybdopterin c 89.1 2.6 5.6E-05 27.3 6.5 60 164-228 17-80 (80)
194 KOG0012 DNA damage inducible p 88.9 0.65 1.4E-05 38.9 4.2 64 85-148 11-76 (380)
195 TIGR01682 moaD molybdopterin c 88.9 2 4.3E-05 27.9 5.8 59 88-151 17-79 (80)
196 PF02597 ThiS: ThiS family; I 88.4 1.2 2.5E-05 28.5 4.4 62 88-151 13-76 (77)
197 PF12754 Blt1: Cell-cycle cont 88.2 0.15 3.2E-06 41.9 0.0 62 77-138 79-160 (309)
198 PRK08053 sulfur carrier protei 88.0 4.2 9.1E-05 25.4 6.7 61 161-228 6-66 (66)
199 PRK07696 sulfur carrier protei 87.8 4 8.6E-05 25.6 6.4 61 161-228 6-67 (67)
200 cd00565 ThiS ThiaminS ubiquiti 87.6 1.9 4.1E-05 26.8 4.9 60 85-151 5-64 (65)
201 PF14453 ThiS-like: ThiS-like 87.6 2.6 5.7E-05 25.6 5.2 46 90-146 9-54 (57)
202 KOG0012 DNA damage inducible p 87.6 0.91 2E-05 38.1 4.2 74 1-74 1-78 (380)
203 cd06408 PB1_NoxR The PB1 domai 87.4 3.4 7.3E-05 27.5 6.0 52 77-132 3-54 (86)
204 TIGR01687 moaD_arch MoaD famil 87.2 2.9 6.4E-05 27.6 5.9 61 164-228 17-88 (88)
205 TIGR01687 moaD_arch MoaD famil 87.1 3.4 7.3E-05 27.3 6.2 61 87-151 16-87 (88)
206 PRK05863 sulfur carrier protei 86.7 5.3 0.00012 24.8 6.6 57 85-149 6-62 (65)
207 COG2104 ThiS Sulfur transfer p 86.5 5.3 0.00012 25.2 6.4 58 166-228 11-68 (68)
208 smart00295 B41 Band 4.1 homolo 86.4 6.6 0.00014 30.1 8.5 37 2-38 5-41 (207)
209 PF00564 PB1: PB1 domain; Int 86.0 3.4 7.4E-05 26.8 5.7 38 86-123 10-48 (84)
210 PF02196 RBD: Raf-like Ras-bin 85.9 4.2 9.1E-05 25.9 5.9 45 3-47 3-47 (71)
211 cd06410 PB1_UP2 Uncharacterize 85.8 3.1 6.8E-05 28.3 5.5 40 5-45 17-56 (97)
212 TIGR01683 thiS thiamine biosyn 85.6 3.2 6.9E-05 25.7 5.1 60 85-151 4-63 (64)
213 KOG2086 Protein tyrosine phosp 85.3 1.6 3.5E-05 37.0 4.6 67 153-219 306-376 (380)
214 cd01818 TIAM1_RBD Ubiquitin do 85.0 2.4 5.3E-05 27.3 4.3 50 156-205 3-52 (77)
215 PF14732 UAE_UbL: Ubiquitin/SU 83.8 4.6 9.9E-05 26.9 5.5 55 167-221 2-66 (87)
216 KOG4261 Talin [Cytoskeleton] 83.7 4.9 0.00011 37.4 7.1 108 86-196 12-129 (1003)
217 PRK05659 sulfur carrier protei 83.3 8.4 0.00018 23.8 7.1 57 9-72 6-62 (66)
218 cd06411 PB1_p51 The PB1 domain 83.1 2.7 5.7E-05 27.3 3.9 36 88-123 8-43 (78)
219 cd06396 PB1_NBR1 The PB1 domai 82.4 4.5 9.8E-05 26.5 4.9 31 7-37 6-38 (81)
220 PF00564 PB1: PB1 domain; Int 82.3 5.6 0.00012 25.8 5.5 38 9-46 9-47 (84)
221 KOG2689 Predicted ubiquitin re 82.0 3.4 7.4E-05 33.5 5.0 69 153-221 211-284 (290)
222 PF10209 DUF2340: Uncharacteri 81.5 3.7 8E-05 29.1 4.5 55 93-147 22-107 (122)
223 cd01817 RGS12_RBD Ubiquitin do 81.3 7.4 0.00016 24.9 5.4 43 5-47 4-46 (73)
224 cd06411 PB1_p51 The PB1 domain 81.1 3.7 8.1E-05 26.7 4.1 37 11-47 7-43 (78)
225 cd05992 PB1 The PB1 domain is 81.1 7 0.00015 25.1 5.6 43 3-46 3-46 (81)
226 PRK06944 sulfur carrier protei 81.0 10 0.00022 23.3 6.6 57 166-228 9-65 (65)
227 KOG2689 Predicted ubiquitin re 81.0 5.9 0.00013 32.1 6.0 70 76-145 210-284 (290)
228 KOG4250 TANK binding protein k 80.7 4.5 9.8E-05 37.2 5.8 43 84-126 322-364 (732)
229 PRK07440 hypothetical protein; 80.6 11 0.00024 23.8 6.2 65 76-150 4-68 (70)
230 TIGR02958 sec_mycoba_snm4 secr 80.4 9.1 0.0002 33.8 7.6 71 2-73 4-81 (452)
231 PF08337 Plexin_cytopl: Plexin 80.0 3.7 8.1E-05 36.8 5.1 65 162-226 201-291 (539)
232 cd06396 PB1_NBR1 The PB1 domai 79.6 7.2 0.00016 25.6 5.1 36 84-121 7-44 (81)
233 PTZ00380 microtubule-associate 79.1 3.5 7.6E-05 29.3 3.8 45 91-135 45-89 (121)
234 TIGR02958 sec_mycoba_snm4 secr 79.1 8 0.00017 34.2 6.9 69 155-224 5-80 (452)
235 KOG2982 Uncharacterized conser 79.0 2.5 5.4E-05 35.1 3.4 54 93-146 354-415 (418)
236 PRK07696 sulfur carrier protei 79.0 12 0.00025 23.5 5.9 59 85-150 6-65 (67)
237 PF10209 DUF2340: Uncharacteri 78.1 4.3 9.3E-05 28.7 3.9 56 169-224 22-108 (122)
238 cd05992 PB1 The PB1 domain is 78.1 8.4 0.00018 24.7 5.3 38 86-123 9-47 (81)
239 PTZ00380 microtubule-associate 77.8 6.4 0.00014 27.9 4.8 45 167-211 45-89 (121)
240 cd01777 SNX27_RA Ubiquitin dom 77.7 4.7 0.0001 26.8 3.8 41 2-42 3-43 (87)
241 PRK06944 sulfur carrier protei 77.2 14 0.00031 22.6 7.3 62 1-73 1-62 (65)
242 PRK11840 bifunctional sulfur c 76.9 12 0.00026 31.3 6.9 63 161-230 6-68 (326)
243 PF08337 Plexin_cytopl: Plexin 75.7 4.6 0.0001 36.3 4.4 65 86-150 201-291 (539)
244 cd01777 SNX27_RA Ubiquitin dom 75.7 6.2 0.00013 26.2 4.0 40 153-192 2-41 (87)
245 PF14451 Ub-Mut7C: Mut7-C ubiq 75.7 10 0.00022 24.8 5.0 53 86-147 22-75 (81)
246 PRK08053 sulfur carrier protei 75.5 17 0.00036 22.6 7.4 62 1-72 1-62 (66)
247 COG2104 ThiS Sulfur transfer p 74.8 18 0.0004 22.8 6.7 55 90-149 11-65 (68)
248 PF03671 Ufm1: Ubiquitin fold 74.8 15 0.00033 23.4 5.3 57 166-222 19-76 (76)
249 cd01817 RGS12_RBD Ubiquitin do 74.6 12 0.00026 24.0 4.9 43 81-123 4-46 (73)
250 cd01818 TIAM1_RBD Ubiquitin do 74.1 10 0.00022 24.5 4.5 41 80-120 3-43 (77)
251 KOG4572 Predicted DNA-binding 73.5 5.8 0.00013 37.1 4.5 62 161-222 3-68 (1424)
252 PF11069 DUF2870: Protein of u 73.5 4.4 9.5E-05 27.5 2.9 31 42-73 3-33 (98)
253 cd06410 PB1_UP2 Uncharacterize 72.7 12 0.00027 25.4 5.0 39 82-121 18-56 (97)
254 cd01787 GRB7_RA RA (RAS-associ 72.5 14 0.0003 24.5 5.0 39 3-41 5-43 (85)
255 PF10407 Cytokin_check_N: Cdc1 71.9 23 0.00051 22.7 5.8 66 11-81 3-69 (73)
256 cd01766 Ufm1 Urm1-like ubiquit 71.8 20 0.00044 22.9 5.3 60 90-149 19-79 (82)
257 cd01787 GRB7_RA RA (RAS-associ 71.5 16 0.00034 24.2 5.1 58 78-135 4-68 (85)
258 PF14451 Ub-Mut7C: Mut7-C ubiq 71.0 19 0.00042 23.5 5.5 53 10-71 22-75 (81)
259 cd06398 PB1_Joka2 The PB1 doma 70.8 29 0.00063 23.3 6.7 39 85-123 8-52 (91)
260 PF11069 DUF2870: Protein of u 70.7 6.8 0.00015 26.6 3.3 36 194-229 3-39 (98)
261 cd01764 Urm1 Urm1-like ubuitin 69.7 12 0.00026 25.3 4.4 57 167-228 23-94 (94)
262 KOG3439 Protein conjugation fa 69.3 30 0.00065 24.0 6.2 38 89-126 47-84 (116)
263 PF09469 Cobl: Cordon-bleu ubi 69.3 6.1 0.00013 25.5 2.7 35 105-139 2-39 (79)
264 KOG4598 Putative ubiquitin-spe 68.9 11 0.00025 34.8 5.2 97 88-186 878-992 (1203)
265 cd06398 PB1_Joka2 The PB1 doma 68.3 24 0.00053 23.6 5.6 39 8-46 7-51 (91)
266 PF09469 Cobl: Cordon-bleu ubi 67.9 2.8 6.1E-05 27.1 1.0 35 181-215 2-39 (79)
267 cd01764 Urm1 Urm1-like ubuitin 67.3 5.7 0.00012 26.8 2.5 56 91-151 23-93 (94)
268 PRK06083 sulfur carrier protei 67.2 20 0.00043 23.7 5.0 64 77-150 19-82 (84)
269 PF00276 Ribosomal_L23: Riboso 67.1 11 0.00025 25.2 3.9 40 10-49 20-60 (91)
270 PF02017 CIDE-N: CIDE-N domain 66.8 17 0.00038 23.6 4.5 48 173-223 21-70 (78)
271 PF03671 Ufm1: Ubiquitin fold 66.4 31 0.00068 22.0 6.2 56 90-145 19-75 (76)
272 PRK05738 rplW 50S ribosomal pr 66.0 11 0.00024 25.3 3.7 40 10-49 20-60 (92)
273 smart00314 RA Ras association 65.1 23 0.00051 23.2 5.2 30 10-39 15-44 (90)
274 COG5100 NPL4 Nuclear pore prot 64.6 26 0.00055 30.3 6.2 68 155-223 3-78 (571)
275 PF00788 RA: Ras association ( 64.5 23 0.00049 23.2 5.1 33 164-196 18-52 (93)
276 TIGR03636 L23_arch archaeal ri 64.5 13 0.00028 24.1 3.6 33 10-42 14-46 (77)
277 PF02017 CIDE-N: CIDE-N domain 64.0 28 0.0006 22.7 5.0 38 97-134 21-60 (78)
278 PF00788 RA: Ras association ( 63.3 36 0.00078 22.2 5.9 27 12-38 18-44 (93)
279 PRK01777 hypothetical protein; 63.2 39 0.00085 22.9 5.9 63 1-72 4-76 (95)
280 cd01775 CYR1_RA Ubiquitin doma 62.8 35 0.00076 23.2 5.5 42 79-120 5-47 (97)
281 cd01768 RA RA (Ras-associating 61.5 31 0.00067 22.4 5.2 35 86-120 12-48 (87)
282 KOG2561 Adaptor protein NUB1, 61.2 8.5 0.00018 33.6 2.9 57 90-146 53-109 (568)
283 KOG3439 Protein conjugation fa 61.1 30 0.00064 24.1 5.0 38 12-49 46-83 (116)
284 PRK11130 moaD molybdopterin sy 61.0 42 0.00092 21.7 6.2 51 96-151 25-80 (81)
285 PRK14548 50S ribosomal protein 60.8 16 0.00035 24.1 3.6 33 10-42 21-53 (84)
286 PF02991 Atg8: Autophagy prote 60.2 17 0.00037 25.1 3.8 46 166-211 36-82 (104)
287 PF02991 Atg8: Autophagy prote 60.1 24 0.00051 24.4 4.5 45 91-135 37-82 (104)
288 KOG4572 Predicted DNA-binding 60.1 14 0.0003 34.9 4.1 52 85-136 3-56 (1424)
289 PRK11130 moaD molybdopterin sy 59.1 46 0.001 21.5 6.4 57 167-228 19-81 (81)
290 PRK11840 bifunctional sulfur c 59.0 60 0.0013 27.4 7.4 59 9-74 6-64 (326)
291 cd01768 RA RA (Ras-associating 58.6 46 0.001 21.6 5.7 29 10-38 12-40 (87)
292 smart00266 CAD Domains present 58.2 20 0.00044 23.0 3.6 38 173-210 19-58 (74)
293 PF00276 Ribosomal_L23: Riboso 57.9 14 0.0003 24.8 3.0 40 163-202 21-61 (91)
294 cd01611 GABARAP Ubiquitin doma 56.8 15 0.00033 25.7 3.2 60 165-224 43-106 (112)
295 PRK08453 fliD flagellar cappin 55.1 48 0.001 30.9 6.8 86 8-93 135-236 (673)
296 COG0089 RplW Ribosomal protein 55.1 17 0.00038 24.5 3.1 38 10-47 21-59 (94)
297 cd06397 PB1_UP1 Uncharacterize 54.7 23 0.0005 23.1 3.4 51 161-211 8-63 (82)
298 KOG2561 Adaptor protein NUB1, 54.6 8.6 0.00019 33.6 1.9 57 167-223 54-110 (568)
299 cd01766 Ufm1 Urm1-like ubiquit 53.9 56 0.0012 20.9 5.5 60 167-226 20-80 (82)
300 PRK05738 rplW 50S ribosomal pr 53.5 32 0.00069 23.1 4.2 40 86-125 20-60 (92)
301 smart00314 RA Ras association 52.9 58 0.0012 21.3 5.5 36 85-120 14-51 (90)
302 cd01611 GABARAP Ubiquitin doma 52.7 33 0.00073 24.0 4.3 45 91-135 45-90 (112)
303 COG5100 NPL4 Nuclear pore prot 52.5 52 0.0011 28.5 6.1 70 77-147 1-78 (571)
304 TIGR03636 L23_arch archaeal ri 52.3 24 0.00052 22.9 3.3 34 163-196 15-48 (77)
305 PF08825 E2_bind: E2 binding d 52.0 33 0.00072 22.6 4.0 55 15-70 1-69 (84)
306 KOG2507 Ubiquitin regulatory p 51.6 50 0.0011 28.8 5.9 77 74-150 312-393 (506)
307 PF02192 PI3K_p85B: PI3-kinase 51.5 20 0.00043 23.3 2.8 25 13-37 2-27 (78)
308 PF08783 DWNN: DWNN domain; I 51.5 37 0.0008 21.8 4.0 35 13-47 12-49 (74)
309 CHL00030 rpl23 ribosomal prote 50.4 27 0.00058 23.6 3.4 39 9-47 18-57 (93)
310 cd01615 CIDE_N CIDE_N domain, 50.1 29 0.00064 22.6 3.4 38 173-210 21-60 (78)
311 KOG4261 Talin [Cytoskeleton] 49.5 50 0.0011 31.2 5.9 101 10-113 12-121 (1003)
312 smart00144 PI3K_rbd PI3-kinase 49.5 85 0.0018 21.6 7.5 72 77-148 18-104 (108)
313 smart00144 PI3K_rbd PI3-kinase 49.4 85 0.0018 21.6 7.1 65 162-226 28-106 (108)
314 PF09138 Urm1: Urm1 (Ubiquitin 48.9 21 0.00045 24.3 2.7 77 146-228 3-96 (96)
315 KOG4146 Ubiquitin-like protein 48.4 82 0.0018 21.2 7.2 84 144-228 6-101 (101)
316 smart00266 CAD Domains present 48.3 49 0.0011 21.3 4.2 38 97-134 19-58 (74)
317 cd01776 Rin1_RA Ubiquitin doma 47.9 30 0.00065 22.7 3.2 43 163-205 14-61 (87)
318 cd06404 PB1_aPKC PB1 domain is 47.8 59 0.0013 21.4 4.6 40 4-44 2-42 (83)
319 PRK14548 50S ribosomal protein 47.5 31 0.00067 22.8 3.3 34 163-196 22-55 (84)
320 cd06397 PB1_UP1 Uncharacterize 47.3 72 0.0016 20.9 4.8 52 84-135 7-63 (82)
321 PF00794 PI3K_rbd: PI3-kinase 47.2 89 0.0019 21.3 6.7 71 77-147 17-101 (106)
322 PF06234 TmoB: Toluene-4-monoo 47.1 83 0.0018 20.8 5.2 58 90-147 18-83 (85)
323 cd01615 CIDE_N CIDE_N domain, 46.9 58 0.0013 21.2 4.4 38 97-134 21-60 (78)
324 cd06539 CIDE_N_A CIDE_N domain 45.7 64 0.0014 21.0 4.4 45 97-143 21-67 (78)
325 KOG0007 Splicing factor 3a, su 45.7 9.4 0.0002 32.4 0.8 50 83-132 289-339 (341)
326 PF14847 Ras_bdg_2: Ras-bindin 45.5 72 0.0016 22.0 5.0 36 155-190 3-38 (105)
327 COG0089 RplW Ribosomal protein 44.1 34 0.00073 23.2 3.1 60 162-221 21-90 (94)
328 PF06234 TmoB: Toluene-4-monoo 43.5 96 0.0021 20.5 5.8 60 165-224 17-84 (85)
329 cd06536 CIDE_N_ICAD CIDE_N dom 43.4 42 0.00091 22.0 3.4 45 173-219 21-69 (80)
330 KOG3938 RGS-GAIP interacting p 42.1 51 0.0011 26.9 4.3 33 16-48 68-101 (334)
331 cd01612 APG12_C Ubiquitin-like 41.5 1E+02 0.0022 20.4 6.0 45 90-134 19-65 (87)
332 CHL00030 rpl23 ribosomal prote 41.3 38 0.00082 22.8 3.1 35 162-196 19-53 (93)
333 PRK12280 rplW 50S ribosomal pr 41.3 42 0.00091 25.1 3.5 40 9-48 21-61 (158)
334 KOG1364 Predicted ubiquitin re 40.6 46 0.001 28.2 4.0 65 78-142 279-349 (356)
335 TIGR03028 EpsE polysaccharide 40.1 1.9E+02 0.0041 23.0 13.0 144 68-222 70-235 (239)
336 cd05484 retropepsin_like_LTR_2 40.0 39 0.00085 22.2 3.0 45 8-52 7-55 (91)
337 smart00143 PI3K_p85B PI3-kinas 39.9 35 0.00076 22.2 2.6 22 13-34 2-23 (78)
338 PF06622 SepQ: SepQ protein; 39.5 1.5E+02 0.0032 23.9 6.4 50 95-146 139-190 (305)
339 KOG0007 Splicing factor 3a, su 38.6 17 0.00038 30.8 1.4 50 160-209 290-340 (341)
340 PF01191 RNA_pol_Rpb5_C: RNA p 38.3 63 0.0014 20.8 3.6 49 175-229 17-65 (74)
341 cd01775 CYR1_RA Ubiquitin doma 37.7 1.3E+02 0.0028 20.5 5.9 64 7-70 9-85 (97)
342 PF04126 Cyclophil_like: Cyclo 37.5 33 0.00072 24.2 2.5 29 1-30 1-29 (120)
343 cd06538 CIDE_N_FSP27 CIDE_N do 37.4 64 0.0014 21.1 3.5 37 173-209 21-58 (79)
344 PF02824 TGS: TGS domain; Int 35.9 71 0.0015 19.3 3.5 50 3-56 1-50 (60)
345 PF04023 FeoA: FeoA domain; I 35.7 85 0.0019 19.5 4.0 36 130-166 26-61 (74)
346 cd01782 AF6_RA_repeat1 Ubiquit 35.3 1.2E+02 0.0025 21.2 4.7 37 1-37 24-62 (112)
347 PF07933 DUF1681: Protein of u 35.1 71 0.0015 23.9 3.9 93 54-147 64-158 (160)
348 PF00794 PI3K_rbd: PI3-kinase 34.9 1.5E+02 0.0032 20.2 6.6 70 155-224 19-102 (106)
349 cd01666 TGS_DRG_C TGS_DRG_C: 34.5 87 0.0019 20.1 3.8 34 1-34 2-38 (75)
350 PF14847 Ras_bdg_2: Ras-bindin 34.3 1.6E+02 0.0034 20.4 5.4 36 3-38 3-38 (105)
351 PF11816 DUF3337: Domain of un 34.0 1E+02 0.0023 26.0 5.3 64 164-227 249-330 (331)
352 PF10787 YfmQ: Uncharacterised 33.2 1.9E+02 0.0042 21.1 5.8 79 93-171 21-112 (149)
353 cd06537 CIDE_N_B CIDE_N domain 32.8 79 0.0017 20.7 3.4 47 173-221 21-68 (81)
354 PTZ00191 60S ribosomal protein 32.5 73 0.0016 23.4 3.5 33 10-42 82-114 (145)
355 PF03931 Skp1_POZ: Skp1 family 31.0 65 0.0014 19.6 2.8 26 1-26 1-29 (62)
356 KOG3391 Transcriptional co-rep 30.6 56 0.0012 23.7 2.6 30 198-227 110-139 (151)
357 cd01816 Raf_RBD Ubiquitin doma 30.3 1.5E+02 0.0033 19.0 4.5 42 156-197 3-44 (74)
358 KOG3391 Transcriptional co-rep 29.4 47 0.001 24.1 2.1 27 124-150 112-138 (151)
359 PRK09570 rpoH DNA-directed RNA 29.1 61 0.0013 21.1 2.4 46 174-225 19-64 (79)
360 KOG4147 Uncharacterized conser 29.0 36 0.00078 23.5 1.4 19 52-70 93-111 (127)
361 cd02413 40S_S3_KH K homology R 28.3 1.7E+02 0.0038 19.0 4.7 27 18-44 47-73 (81)
362 PLN02593 adrenodoxin-like ferr 27.9 1.3E+02 0.0028 21.1 4.1 29 1-29 1-29 (117)
363 PRK09555 feoA ferrous iron tra 27.9 68 0.0015 20.5 2.5 25 205-229 23-47 (74)
364 PF01376 Enterotoxin_b: Heat-l 27.5 78 0.0017 20.7 2.6 31 3-33 38-68 (102)
365 PRK03641 hypothetical protein; 27.4 3.1E+02 0.0067 21.6 7.1 106 34-140 23-156 (220)
366 PF11834 DUF3354: Domain of un 27.3 67 0.0014 20.3 2.3 35 21-56 26-60 (69)
367 KOG2507 Ubiquitin regulatory p 27.3 98 0.0021 27.1 3.9 75 151-225 313-392 (506)
368 PF11305 DUF3107: Protein of u 26.9 1.3E+02 0.0028 19.4 3.6 36 1-37 1-36 (74)
369 COG1977 MoaD Molybdopterin con 26.8 1.3E+02 0.0029 19.5 3.9 55 170-228 25-84 (84)
370 KOG1364 Predicted ubiquitin re 26.4 72 0.0016 27.1 3.0 65 2-66 279-349 (356)
371 cd01612 APG12_C Ubiquitin-like 26.2 1.6E+02 0.0035 19.5 4.1 33 15-47 20-52 (87)
372 cd01782 AF6_RA_repeat1 Ubiquit 26.1 2.3E+02 0.005 19.7 5.6 46 75-120 22-74 (112)
373 PF08299 Bac_DnaA_C: Bacterial 25.9 29 0.00062 21.9 0.5 19 22-40 1-19 (70)
374 KOG2660 Locus-specific chromos 25.4 64 0.0014 27.1 2.5 47 90-136 167-215 (331)
375 PF04110 APG12: Ubiquitin-like 25.4 2.1E+02 0.0046 19.0 4.8 47 164-210 17-65 (87)
376 PRK12280 rplW 50S ribosomal pr 25.2 1E+02 0.0022 23.1 3.3 38 162-199 22-60 (158)
377 PF09269 DUF1967: Domain of un 25.1 42 0.00092 21.1 1.1 17 205-221 46-62 (69)
378 KOG2660 Locus-specific chromos 24.7 52 0.0011 27.6 1.9 47 165-211 166-214 (331)
379 PF02505 MCR_D: Methyl-coenzym 23.9 3.1E+02 0.0067 20.4 7.0 109 13-135 6-120 (153)
380 TIGR03595 Obg_CgtA_exten Obg f 23.6 52 0.0011 20.7 1.3 18 205-222 46-63 (69)
381 cd05736 Ig2_Follistatin_like S 23.2 1.5E+02 0.0033 18.2 3.6 20 185-204 7-26 (76)
382 KOG3073 Protein required for 1 22.7 88 0.0019 24.4 2.6 75 113-188 157-235 (236)
383 COG1918 FeoA Fe2+ transport sy 22.4 95 0.0021 20.0 2.4 24 206-229 25-48 (75)
384 KOG3483 Uncharacterized conser 22.2 2.3E+02 0.0049 18.3 4.7 59 91-149 31-90 (94)
385 PHA02090 hypothetical protein 22.1 16 0.00035 22.5 -1.1 38 7-44 34-71 (79)
386 smart00760 Bac_DnaA_C Bacteria 21.7 50 0.0011 19.9 1.0 19 22-40 1-19 (60)
387 PF06622 SepQ: SepQ protein; 21.4 4.4E+02 0.0096 21.3 8.7 54 17-70 137-192 (305)
388 PF11816 DUF3337: Domain of un 20.5 3.9E+02 0.0084 22.5 6.4 60 90-149 251-328 (331)
389 PRK08453 fliD flagellar cappin 20.5 3.5E+02 0.0077 25.5 6.5 86 84-169 135-236 (673)
390 PTZ00191 60S ribosomal protein 20.4 1.4E+02 0.003 22.0 3.1 35 162-196 82-116 (145)
391 cd06402 PB1_p62 The PB1 domain 20.2 2.8E+02 0.006 18.5 4.5 38 87-124 17-55 (87)
392 PF13699 DUF4157: Domain of un 20.2 1.4E+02 0.0031 19.3 2.9 45 177-221 5-49 (79)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=1.6e-20 Score=129.99 Aligned_cols=96 Identities=44% Similarity=0.642 Sum_probs=90.5
Q ss_pred cccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcc
Q 026933 57 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~ 136 (230)
.-+++..-+++++.+++.+.|+|+|+..+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~ 87 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87 (103)
T ss_pred CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence 34667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEEeecc
Q 026933 137 IQKESTLHLVLRLRGG 152 (230)
Q Consensus 137 i~~~~~i~l~~~~~~~ 152 (230)
|.++++|++.+++.+|
T Consensus 88 I~~~stL~l~~~l~GG 103 (103)
T cd01802 88 ISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999999987764
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=2.6e-20 Score=128.89 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.9
Q ss_pred hcccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCC
Q 026933 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i 213 (230)
-+++.+-+++++.+++.+.|+++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 026933 214 QKESTLHLVLRLRGG 228 (230)
Q Consensus 214 ~~g~~i~l~~~~~~g 228 (230)
++|++|++.++++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999987
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.84 E-value=1.2e-20 Score=123.65 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.81 E-value=1.2e-19 Score=119.73 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++++++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.81 E-value=1.2e-19 Score=119.52 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.6
Q ss_pred CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++..|++ ++++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 999999999997 6895 89999999999999999999999999999999999999999999999999999998754
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.81 E-value=1.4e-19 Score=118.47 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=69.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+||+. ++++++|++++||+++|.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 78999999999999999999999999999999999999999999999999999999999988754
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=4.5e-19 Score=115.01 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|++..|+.+.++++|++||++||.+|++..|+|+++|+|.|.|+.|+|+.+|++|||.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=6.5e-19 Score=115.39 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.6
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999874
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.78 E-value=1.4e-18 Score=114.53 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 10
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=1.2e-18 Score=114.86 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988643
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.77 E-value=1.5e-18 Score=114.49 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=71.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++..|+.+++++++++||++||.+|++..|+|+++|+|.|.|+.|+|+ +|++||+.+++++++.....++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999999876544
No 12
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.77 E-value=1.3e-18 Score=113.98 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=69.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999998764
No 13
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.77 E-value=1.5e-18 Score=113.61 Aligned_cols=74 Identities=41% Similarity=0.621 Sum_probs=69.6
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|+++|+. .+++++++++++||+++|++|+++.|+|++.|+|+|+|+.|+|+++|++|+|+++++|++++++.||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4577776 3689999999999999999999999999999999999999999999999999999999999999987
No 14
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.76 E-value=4e-18 Score=112.64 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--p~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++++++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988754
No 15
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.76 E-value=3.3e-18 Score=111.59 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+||+++|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.76 E-value=2.3e-18 Score=111.01 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=66.0
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+.++|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999975
No 17
>PTZ00044 ubiquitin; Provisional
Probab=99.75 E-value=3.9e-18 Score=112.39 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.4
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999887
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=3.3e-18 Score=111.97 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.3
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
++|++..|+++++++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|||++++++++.+++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999876
No 19
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=4e-18 Score=112.23 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=70.8
Q ss_pred eeeEEEccCCcE-Eeec-cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 77 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|++.+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.++++|++++++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 789999999997 6885 89999999999999999999999999999999999999999999999999999998754
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=7.9e-18 Score=109.17 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.1
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
|.|+|++..|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+.+|++||+.+|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999863
No 21
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=8.8e-18 Score=110.86 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.1
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.|+|+|+...|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+ +|++||+.+|++|+++..+.+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 378999999999999999999999999999999999999999999999999999 99999999999999998887764
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.74 E-value=5e-18 Score=109.97 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+++.|+++++++++++||+++|.+|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++|+..+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.74 E-value=1.1e-17 Score=110.17 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.+++.||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999887
No 24
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=1.7e-17 Score=109.38 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+++|++|++++|++|++.++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999887
No 25
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.72 E-value=1.5e-17 Score=110.42 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=70.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeE--EecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l--~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++..|+++.+++++++||++||.+|++..|+|+++|+| .|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 789999999999999999999999998763
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.71 E-value=2e-17 Score=106.57 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.5
Q ss_pred EEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
.|+..+|+++.+++++++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|.+|++.++++|++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999875
No 27
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.9e-19 Score=116.67 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+++|+++.|++.++++.|++||..+|.+|++..||||+.|+|.|+|+.|+|..|+++|||...+++|+.+++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998876544
No 28
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.70 E-value=6.7e-17 Score=106.75 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=69.8
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC--CCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 689999999999999999999999999999999999 9999999999999999999999999999999988764
No 29
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.70 E-value=4.2e-17 Score=105.61 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.8
Q ss_pred eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
|+|++.+|+.+.+++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++||++++++++++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5788999999999999999999999999999999999999999999999999999999999999998753
No 30
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.70 E-value=6.5e-17 Score=105.01 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++..|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+.+++++|+.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999864
No 31
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=6.8e-17 Score=104.43 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.3
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+++|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998764
No 32
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.7e-17 Score=119.04 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|+++.|++.++++.+++||..+|.+||+..|||+++|||+|.|+.|+|..+|++|+|...+++++++++.++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654
No 33
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.69 E-value=5.6e-17 Score=105.11 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.5
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEE
Q 026933 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~ 70 (230)
|+|++. +|+++.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+ .+|++|||.+++.+++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 34
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.7e-17 Score=97.26 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+++.|+.+.+++.|.++|..+|++|+...||||.+|||.|.|+.+.|+.+-++|++..+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999973
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.68 E-value=1.3e-16 Score=103.96 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=68.4
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++++++.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999998875
No 36
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.68 E-value=1.7e-16 Score=102.51 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.3
Q ss_pred eeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026933 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~ 226 (230)
++.+|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 356789999999999999999999999999999999999999999999999999999999999998864
No 37
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.68 E-value=1.9e-16 Score=105.11 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=70.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEE--EecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
|+++|+..+|+.+.+++++++||++||++|++..++|+++|+| .|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 899999999999999999999999998874
No 38
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.67 E-value=1.4e-16 Score=104.68 Aligned_cols=69 Identities=32% Similarity=0.653 Sum_probs=66.8
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+++++++++++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++++++||+
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 688999999999999999999999999999999999999999999999999999999999999999885
No 39
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=2.8e-16 Score=102.10 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999997 99999999999999999999999999999999999999999999999999999999998863
No 40
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.66 E-value=2.4e-16 Score=103.57 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=64.8
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
++|+++++++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999988644
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.64 E-value=5.1e-16 Score=100.75 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=66.1
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
+.|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||++++++|+++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46888999886 589999999999999999999999999999999999999999999999999999998764
No 42
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.63 E-value=7.5e-16 Score=100.38 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.3
Q ss_pred CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCccccCCccccccc--cccCCeEEEEE
Q 026933 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~l~d~~~l~~~~--i~~~~~i~l~~ 71 (230)
|.++||+.+|+. +++++++++||++||++|++..+ .|+++|+|.|+|+.|+|+.+|++|. +.++.++||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 45555899999999999999885 4579999999999999999999996 99999999973
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.63 E-value=7.1e-16 Score=99.91 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.2
Q ss_pred eEEEcc-CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCC-cchhhcccccCCceEEE
Q 026933 79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~ 146 (230)
++|++. +|+.+.+++++++||++||.+|+++.|+|++.|+|+|+|+.|+|+ .+|++||+++|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999887 68999999999998763
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.62 E-value=1.8e-15 Score=98.63 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred eeeEEEccCCcE--EeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcc--cccCCceEEEE
Q 026933 77 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~--i~~~~~i~l~~ 147 (230)
+.++|++++++. +.+++++++||++||++|++..+ .|+++|+|+|.|+.|+|+.+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 679999999988 55566899999999999999875 5589999999999999999999996 99999999974
No 45
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.7e-16 Score=92.56 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
|.|.|++++|+.+.++++++++|..+|++++++.||||.+|||+|.|+.+.|+.+-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999874
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.61 E-value=2.2e-15 Score=98.21 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe---cCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~---~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+. +|+++++++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++.+++.++++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 5788854 6999999999999999999999999999999999996 8999999999999999999998886
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.61 E-value=4.4e-15 Score=100.03 Aligned_cols=78 Identities=18% Similarity=0.446 Sum_probs=74.5
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
..+.+.|+...|+.+.+++.+++|++.||++++++.|+|++.++|+|+|+.|+++.|+.+|++++|++|++++++.||
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 346788899999999999999999999999999999999999999999999999999999999999999999999998
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=3.6e-15 Score=96.84 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=64.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
++|.|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+++|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46788876 8889999999999999999999999999999999999999999999999999999999876
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.59 E-value=9.4e-15 Score=98.44 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=74.9
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|++.+|+.+.++|.+++|+..||.+++++.|+|++.|+|+|+|+.|+++.|+.+|++.++++|++++++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999988765
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.58 E-value=5.6e-15 Score=96.24 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=62.7
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe---cCcccCCCcchhhcccccCCceEEE
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.|.|+ .+|+.+.+++++++||++||++|++.+++|+++|+|+| .|+.+.|+.+|++|++++|+.|.++
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 46665 57888999999999999999999999999999999996 8999999999999999999999876
No 51
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2e-16 Score=105.70 Aligned_cols=76 Identities=97% Similarity=1.298 Sum_probs=73.1
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+++....|+++.+++++.+||..+|.+|....|+|++.|+|+|+|+.|+|+.||++|+|+.-|+|+++.|++||.
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 4678888999999999999999999999999999999999999999999999999999999999999999999984
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.58 E-value=5.8e-15 Score=93.78 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+|+..+ +++.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998764
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.9e-15 Score=107.67 Aligned_cols=77 Identities=95% Similarity=1.308 Sum_probs=74.2
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
|.|+|+...++++.+++.+++||..+|++|++..+||+++|+|+|.|+.|+|+.+|+||+|+..+++++++++.||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999998883
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.54 E-value=1.8e-14 Score=93.99 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=60.6
Q ss_pred EEEEE--ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-CCccccccccc-cCCeEEEEE
Q 026933 2 QIFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (230)
Q Consensus 2 ~v~v~--~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-d~~~l~~~~i~-~~~~i~l~~ 71 (230)
+|+|. ...|.++++++++++||++||++|++.+|||++.|+| |+|+.|. |+.+|++||+. +++++++.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44554 4568999999999999999999999999999999999 9998885 67999999998 779998864
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=4.8e-14 Score=118.53 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|.+++.+++++.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999888754
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.48 E-value=8.9e-14 Score=88.24 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.3
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCC
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~ 141 (230)
|+|+|+..+ ..+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++||+.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578898888 6899999999999999999999999999999999999999999999999999875
No 57
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.48 E-value=8.8e-14 Score=92.43 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=57.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEE
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~ 72 (230)
..+++|++++||.+||.+|.+.+++||.+|+|+++|+.|.|+ .||++||+.++++++|.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 567899999999999999999999999999999999999875 9999999999999999864
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.46 E-value=2.1e-13 Score=88.86 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=58.7
Q ss_pred EccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccC-CCcchhhcccc-cCCceEEEE
Q 026933 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 147 (230)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~l~~~~i~-~~~~i~l~~ 147 (230)
+...|.++.+++++++||++||++|+++.|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34578899999999999999999999999999999999 9998885 77999999998 789998864
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=2.9e-13 Score=113.89 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=70.5
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++...
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 68999999999999999999999999999999998 999999999999999999999999999999999887653
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.43 E-value=2.1e-13 Score=87.62 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.7
Q ss_pred ccCcHHHHHHHHhhHh--CCC-CCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
.++||++||++|+++. +++ +++|+|+|.|+.|+|+.||++|||++|++|+++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4789999999999996 465 8999999999999999999999999999999874
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.40 E-value=3.5e-13 Score=86.60 Aligned_cols=52 Identities=33% Similarity=0.554 Sum_probs=48.3
Q ss_pred CCcHHHHHHHhhhhh--CCC-CCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 20 SDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~--gip-~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
++||.+||.+|++.. |+| +++|+|.|.|+.|+|+.+|++|||.+++++|++.
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 579999999999996 575 9999999999999999999999999999999974
No 62
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=2e-12 Score=83.20 Aligned_cols=68 Identities=66% Similarity=0.966 Sum_probs=63.8
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+..+|+.+.+++++++||.+||.+|+..+|+|+++|+|.|+|+.|+|..+|.+|++.+++.+++..
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36778899999999999999999999999999999999999999999999999999999999988763
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=1.6e-12 Score=89.21 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=63.3
Q ss_pred CeeeEEEccCCcEE-eeccCccCcHHHHHHHHhhHh-----CC--CCCCeEEEecCcccCCCcchhhcc------cccCC
Q 026933 76 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GI--PPDQQRLIFAGKQLEDGRTLADYN------IQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~i--~~~~q~L~~~g~~L~d~~~l~~~~------i~~~~ 141 (230)
.+.|.++..+|..+ +..+++++||++||++|++.+ ++ +++.|+|+|.|+.|+|++||++|+ +....
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 45677778888554 778899999999999999666 34 499999999999999999999999 66668
Q ss_pred ceEEEEEee
Q 026933 142 TLHLVLRLR 150 (230)
Q Consensus 142 ~i~l~~~~~ 150 (230)
++|+++++.
T Consensus 84 TmHvvlr~~ 92 (113)
T cd01814 84 TMHVVVQPP 92 (113)
T ss_pred EEEEEecCC
Confidence 888888765
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.34 E-value=3.8e-12 Score=81.89 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.5
Q ss_pred EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
|+..+|+.+.+.+++++||++||.+|++.+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5666889999999999999999999999999999999999999999999999999999999998763
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.34 E-value=1.2e-12 Score=89.80 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=63.5
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceeEEecCccccCCccccccc------cccCCeE
Q 026933 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gip--~~~q~l~~~g~~l~d~~~l~~~~------i~~~~~i 67 (230)
.|.++..+|. .=+..+++++||++||++|+ +..|+| +++|+|+|.|+.|+|++||++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 5777888884 45788999999999999999 455666 99999999999999999999999 7777899
Q ss_pred EEEEEec
Q 026933 68 HLVLRLR 74 (230)
Q Consensus 68 ~l~~~~~ 74 (230)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9998874
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.30 E-value=5.1e-12 Score=84.10 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=55.8
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccC-CCcchhhcccccCCceEEEEE
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~ 148 (230)
...++|++++||.+||..|.+.+++||..|+|+++|+.|. |++||++||+.++++|.+.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 4578899999999999999999999999999999999995 578999999999999988754
No 67
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.30 E-value=9.6e-12 Score=80.86 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.3
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
|+|.|+..+|+.+.+.+.+++++..|++.++++.++|+ +.++|+|+|+.|+++.|++++|+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57899999999999999999999999999999999999 999999999999999999999999999998863
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.29 E-value=5.1e-12 Score=106.84 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.2
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
.++|+||+.++ ++.+.|..+.||.+||++|..++++|+++++|+|.|+.|+|+.||..|||.+|.+|||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47899999888 889999999999999999999999999999999999999999999999999999999998754
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.29 E-value=1.1e-11 Score=80.65 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+..+|+.+.+.|.+++++..|+++..+..|+|+ +..+|+|+|+.|+++.|++++|+.+++.+++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999998863
No 70
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.28 E-value=8.4e-12 Score=100.45 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+||++.|.+|++++.|++||.++|.+|+...| .|+++|+|+|+|+.|.|+.++.+|++..++-+.+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999888776544
No 71
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.25 E-value=1.1e-11 Score=104.73 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
++|+||+.+. .+.+.|..+.||.+||++|.+.+++|+++|+|+|.|+.|+|+.||..|||.++.++||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 5799999977 899999999999999999999999999999999999999999999999999999999998763
No 72
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.20 E-value=5.2e-11 Score=81.29 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=64.4
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccc-------ccCCeEEEEEE
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-------~~~~~i~l~~~ 72 (230)
|.||++....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+ .....+.|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999988766 67899999999999999999999999999999977789999999999999 44566777766
Q ss_pred e
Q 026933 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
-
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 3
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.20 E-value=3.3e-11 Score=97.02 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=71.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||++.+++|.+++.+++||.++|.+|+...| +|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999998888765
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.18 E-value=1.3e-10 Score=77.58 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.9
Q ss_pred EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCc-----cc-cCCccccccccccCCeEEEEE
Q 026933 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~-----~l-~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+... ......++++++||.+||++++..+|+||+.|+|. +.|+ .| +|..+|.+||+.++.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666543 34455679999999999999999999999999996 7776 35 567999999999999999863
No 75
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.16 E-value=2e-10 Score=72.07 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=64.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec--C---ccccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g---~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
++|+|+-.++..+.+.|+|..+|.++|++|....|++- .|||.|+ | +.|.+..+|++|||..+.+|.++..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 58999999999999999999999999999999999998 9999996 2 6688999999999999988887654
No 76
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.08 E-value=6.6e-10 Score=74.87 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=56.5
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-C------c-cccCCccccccccccCCeEEEE
Q 026933 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------K-QLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g------~-~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|....- ......+++++||++||.+|+..+|+|++.|+|.+. . . ..+|..+|.+||+.++.+||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567766654 488899999999999999999999999999999976 1 2 2356799999999999998875
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.07 E-value=7e-10 Score=74.07 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=56.8
Q ss_pred EEEeeec-CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026933 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~-~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~-----~L-~d~~~L~~~~i~~g~~i~l~~ 223 (230)
+.+.+.. ....+..+++..||++||++++..+|+|++.|+|. |.+. .| +|.++|++|++++|++|++.=
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4444432 33456669999999999999999999999999995 7776 45 788999999999999999863
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.04 E-value=8.3e-10 Score=75.46 Aligned_cols=69 Identities=30% Similarity=0.438 Sum_probs=62.2
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGGF 230 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i-------~~g~~i~l~~~~~~g~~ 230 (230)
..++-+.+.+++||.+||++|+.-...||++|+|+..+.+|+|++||++||+ +.-+++-|.+|...|.|
T Consensus 11 KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 11 KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred ceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 4468889999999999999999999999999999977789999999999999 77999999999766654
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=2.1e-09 Score=69.51 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=68.0
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+++++..|+++.+++.+..+|..+|.+|....|+|++.|++.+.|+.|+|+.++.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 578889999999999999999999999999999999999999999999999999999999999999987653
No 80
>PLN02560 enoyl-CoA reductase
Probab=99.00 E-value=1.2e-09 Score=89.95 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.6
Q ss_pred CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceeEEec---C----ccccCCccccccccccCCeEEE
Q 026933 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-p~~~q~l~~~---g----~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+..+|+.. ++++++++||+|||.+|++..++ ++++|||.+. | ..|+|+.+|+++|+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999987 79999999999999999999987 8999999983 3 3789999999999999998665
Q ss_pred E
Q 026933 70 V 70 (230)
Q Consensus 70 ~ 70 (230)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.97 E-value=2.9e-09 Score=71.70 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=55.6
Q ss_pred eEEEeeecC--ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEEC-C------eec-CCCCcccccCCCCCCEEEEE
Q 026933 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~~--~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~-g------~~L-~d~~~L~~~~i~~g~~i~l~ 222 (230)
.+.|.+... ...+..++.+.||++||.+++..+|+|++.|+|.+. . ..+ +|.++|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 355555444 478899999999999999999999999999999865 1 233 67999999999999999985
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.87 E-value=1e-08 Score=71.71 Aligned_cols=73 Identities=30% Similarity=0.510 Sum_probs=54.9
Q ss_pred eeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhC-------CCCCCeEEEecCcccCCCcchhhcccccCC------c
Q 026933 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 142 (230)
Q Consensus 77 ~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~ 142 (230)
+.+.++..+|. ..++.+++++||++||+.|...|. ..++.+||+|.|+.|+|+.+|+++++..++ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45666677888 788999999999999999998773 235679999999999999999999988776 4
Q ss_pred eEEEEEe
Q 026933 143 LHLVLRL 149 (230)
Q Consensus 143 i~l~~~~ 149 (230)
+|+++++
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 5555554
No 83
>PLN02560 enoyl-CoA reductase
Probab=98.83 E-value=1e-08 Score=84.53 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=60.6
Q ss_pred eeeEEEccCCcEE---eeccCccCcHHHHHHHHhhHhCC-CCCCeEEEec---C----cccCCCcchhhcccccCCceEE
Q 026933 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~~---g----~~L~d~~~l~~~~i~~~~~i~l 145 (230)
|+|.|+..+|+.+ .+++++++||++||++|+++.++ ++++|+|.+. | ..|+|+++|+++|+++|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5688888888886 79999999999999999999986 8999999973 3 3789999999999999998765
Q ss_pred E
Q 026933 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 84
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.83 E-value=3.4e-08 Score=63.75 Aligned_cols=72 Identities=83% Similarity=1.142 Sum_probs=66.8
Q ss_pred EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~ 227 (230)
++....|+++.+++.+..+++.+|.+|+...|++++.|++.+.|+.|.|+.++.+|+|..++++++..++.+
T Consensus 3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 455677899999999999999999999999999999999999999999999999999999999999988764
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=8.1e-09 Score=94.20 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
.|+||+++.++.++.|+..+||.++|..|..+.+|+.+.||++|.|+.|.|++++.+|++ ++-++||+-++.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 99999999987654
No 86
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.2e-08 Score=93.11 Aligned_cols=77 Identities=32% Similarity=0.572 Sum_probs=72.2
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeE
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i 155 (230)
.|.||+++.++.++.+...+||.+||..|.++.+|+.+.||++|.|+.|.|++++++|++ +|-+|||+-|++++...
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~~~ 80 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQTHL 80 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCccc
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999997766433
No 87
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.72 E-value=1.1e-07 Score=66.50 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=53.9
Q ss_pred eEEEeeecCc-eEEEEeeccccHHHHHHHhchhcC-------CCCCceEEEECCeecCCCCcccccCCCCCC------EE
Q 026933 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 219 (230)
Q Consensus 154 ~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~g-------i~~~~~~L~~~g~~L~d~~~L~~~~i~~g~------~i 219 (230)
.+..+..+|+ ..++.+++.+||++||+.|...|- ..++.++|+|.|+.|+|+.+|+++++..|+ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 4455566888 788999999999999999998872 135679999999999999999999998877 46
Q ss_pred EEEEEe
Q 026933 220 HLVLRL 225 (230)
Q Consensus 220 ~l~~~~ 225 (230)
||+++.
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 666654
No 88
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.69 E-value=2.8e-08 Score=65.40 Aligned_cols=70 Identities=29% Similarity=0.430 Sum_probs=43.3
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC---eec--CCCCcccccCCCCCCEEEEE
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g---~~L--~d~~~L~~~~i~~g~~i~l~ 222 (230)
.|.+.+++.+| .+.+++++++|+.+|+++|++.+++|...+.|..+. ..+ +++++|+++|++.||.|+|.
T Consensus 4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 35567777665 678899999999999999999999999998886322 345 57899999999999999874
No 89
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.67 E-value=7.8e-08 Score=63.13 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=52.9
Q ss_pred EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceeEE--ecCccccCCccccccccccCCeEEE
Q 026933 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-ip~~~q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|.++... .....+++ ++++||.+||..|....+ .++++|+|. +.|+.|.|+.+|++||+.+++++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 34554444 22222333 588999999999999876 579999997 6789999999999999999998765
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.66 E-value=9.8e-08 Score=62.67 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.7
Q ss_pred CccCcHHHHHHHHhhHhC-CCCCCeEEE--ecCcccCCCcchhhcccccCCceEE
Q 026933 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999999986 689999996 7899999999999999999998765
No 91
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.54 E-value=3.1e-07 Score=60.49 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=42.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---ccc--cCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|-|.|++.+| .+.+++++++|+.+|+++|++.+++|.+.|.|+.+. ..+ +++.+|+++||..|+-+++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5577777765 566789999999999999999999999999987542 344 45799999999999998774
No 92
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.6e-08 Score=60.70 Aligned_cols=69 Identities=26% Similarity=0.390 Sum_probs=62.2
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
+.+...-|+...+.+++++||.++|+.|+..+|..++...|-.++...+|.-+|++|.|.+|..+.+..
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 344555688999999999999999999999999999999998888999999999999999999988754
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.50 E-value=5.6e-07 Score=55.78 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=60.5
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|....+.+.+++|+.++|.++...+|+++..|.|+++|..+.+...+.++++..++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3445788999999999999999999999999999999999999999998888899999999988763
No 94
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.47 E-value=2.6e-07 Score=61.03 Aligned_cols=64 Identities=30% Similarity=0.447 Sum_probs=55.6
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cC-ccccCCccccccccccC
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g-~~l~d~~~l~~~~i~~~ 64 (230)
|.+|++....+ ++.++..++.||.|||++++....-|++.|+|+. .. +.|+|.+||+++|..+.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~ 67 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQ 67 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccccc
Confidence 67788776555 6789999999999999999999999999999996 43 88999999999997643
No 95
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.45 E-value=1.2e-06 Score=55.24 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=60.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC-----cccCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
++|+|+......+.+.|+|..+|..+|++|....+++- .|+|.|.. +.|.+..+|++|||-.+..|.++.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 46888888889999999999999999999999999888 89999852 567899999999998877776654
No 96
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.1e-06 Score=56.81 Aligned_cols=77 Identities=17% Similarity=0.419 Sum_probs=70.4
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|....+....+.+..++....|++.-+++-|++.+..+++|+|+.+.+..|-++++.++|+.|.+..-+.||.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45566666677889999999999999999999999999999999999999999999999999999999999888875
No 97
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.39 E-value=1.4e-06 Score=53.86 Aligned_cols=63 Identities=46% Similarity=0.693 Sum_probs=57.9
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.++....+.+.++.|++++|..++++++++++.+.|.++|..+.+...+.++++.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 367788889999999999999999999999999999999999999888889999999998775
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.6e-06 Score=56.47 Aligned_cols=79 Identities=16% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..+++.|+..++....+.+..+++...|+...+++.|++.+..|++|+|+.+.+..|-.+.+..+|+.|.++....+|.
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4567778887888889999999999999999999999999999999999999999999999999999999998777664
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.3e-07 Score=54.71 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=60.7
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.+.++..-|+...+.+.+++||+++|..|+..+|-.++.+.|--.+...+|.-+|++|.+.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666678999999999999999999999999999999988877788899999999999999877654
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.4e-06 Score=68.81 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.9
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE-EEe
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~-~~~ 149 (230)
..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++.++..+.+...+.++++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 457889999999999999999999999999999999999999999999999999988887 444
No 101
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.1e-06 Score=69.72 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=62.5
Q ss_pred ccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 7 TLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 7 ~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
-+.|+.++++ ++.++|+..+|.++...+|+||++|++.++|..+.|+..+...+|+++.++++.-..
T Consensus 9 KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 9 KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 4679999988 999999999999999999999999999999999999999999999999999998543
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.6e-06 Score=66.39 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=64.3
Q ss_pred CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE-EEe
Q 026933 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~-~~~ 73 (230)
|.|.|+.. ....++++|+.+.+|.+||+-+....|+|+++-+.+|.|++|+++.++..+.+...+.+|++ ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 66777654 23578899999999999999999999999999999999999999999999999999988887 444
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.07 E-value=1.1e-05 Score=50.61 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred eecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 159 ~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
..+++...+.+.++.++.++-++.++++|++++.+.|.|+++.++-+.+++-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 346788999999999999999999999999999999999999999999999999999999875
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.85 E-value=2.6e-05 Score=51.70 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=48.0
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cC-cccCCCcchhhccccc
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 139 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g-~~L~d~~~l~~~~i~~ 139 (230)
+..++.++.+++.||.+||.+++....-|+++|+|.- .. +.|+|.++|+++|...
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 4456788999999999999999999999999999985 33 7889999999998754
No 105
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.83 E-value=7.6e-05 Score=46.88 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.8
Q ss_pred ccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEE
Q 026933 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 83 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
..+++++.+.+.++.++.++-+..+++++++++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467889999999999999999999999999999999999999999999999999999998754
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=8.8e-05 Score=63.24 Aligned_cols=66 Identities=23% Similarity=0.403 Sum_probs=61.0
Q ss_pred ecCceEEEE-eeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 160 LTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 160 ~~~~~~~~~-v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
+.|+.++++ ++.++|+..||.++...+|++|++|++++.|..+.|+..+...+|++|.+++++-..
T Consensus 10 W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 10 WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 478889988 999999999999999999999999999999999999888999999999999987653
No 107
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.63 E-value=0.00023 Score=46.83 Aligned_cols=68 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce------eEE-ecCccccCCccccccccccCCeEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ------RLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q------~l~-~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
+|+|..-+|+.+.+.++.+.||.+|...+-+..+.+.... .|. -+|..|+++.+|+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5677665578999999999999999999999999764332 233 4588999999999999999999876
No 108
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=6.3e-05 Score=49.28 Aligned_cols=77 Identities=17% Similarity=0.382 Sum_probs=69.5
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.+...++.++-+.+.-+.+...|....+.+-|-..+..+++|+|+..+.++|..+++.++|+.|..+..+.||.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 44555666788899999999999999999999999999999999999999999999999999999999888888875
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.52 E-value=0.00029 Score=46.35 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=47.5
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCC---C---ceEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~---~---~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
+.+...+++.+.+.++.+.+|++|...+.+..+.+. . .+.|. -+|..|+++.+|+++||.+|+.+.+
T Consensus 5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 344443467899999999999999999999887532 2 35665 6788999999999999999999976
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.46 E-value=0.0013 Score=43.48 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=57.9
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEE--ECCeecCCC--CcccccCCCCCCEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~--~~g~~L~d~--~~L~~~~i~~g~~i~l 221 (230)
..+.++.++|+.+.-.+..++|+.+|..-|......+... +.|+ |..+.+.+. +||.+.|+.++++|.+
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4677888899999999999999999999999987766664 8886 566777433 7999999999999976
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.43 E-value=0.0012 Score=49.00 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=48.9
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-eEEec-Cccc--cCCccccccccc
Q 026933 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQ 62 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q-~l~~~-g~~l--~d~~~l~~~~i~ 62 (230)
|+|+|.+++| .++.+.+++++||.+|+..|....++|...| .|++. ++.+ .++..++++.-.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~ 70 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSS 70 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccC
Confidence 7899999999 5899999999999999999999999999885 45553 4555 344555555433
No 112
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.41 E-value=0.0013 Score=43.26 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.2
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCC---CcchhhcccccCCceEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l 145 (230)
..+|.|+..+|..+.-.++.++|+.++.+-+....+.+.....|. |..+.+.+ +.||.+.|+.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 356888999999999999999999999999976666666778886 56677753 57999999988887754
No 113
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.31 E-value=0.0013 Score=43.27 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=56.8
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~l 221 (230)
..|.++.++|+.+...+++++|++++.+-|....+.....+.|+ |..+.+.+ ++||.+.|+.+++++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45778889999999999999999999999966666666778887 55666743 57999999999998865
No 114
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.28 E-value=0.0025 Score=42.05 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=57.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEE--ecCccccCC--ccccccccccCCeEEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~--~~g~~l~d~--~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|..+.-...+++||.+|...|......+... -.|. |..+.+.+. .||++.|+.+++++++.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 688999999999999999999999999999998887764 3454 555666654 69999999999988763
No 115
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.27 E-value=0.00088 Score=45.71 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=39.0
Q ss_pred EeeccC--ccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcc
Q 026933 89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 89 ~~~~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~ 136 (230)
+.++++ .+.||..||+.|.+..+ ..-.+++|+|+|+.|.|...|...-
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 556555 78899999999999984 4455789999999999988877653
No 116
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.27 E-value=0.0017 Score=48.17 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=56.8
Q ss_pred eeEEEeeecC----ceEEEEeeccccHHHHHHHhchhcCCCCCce-EEEE-CCeec--CCCCcccccCCCCC----CEEE
Q 026933 153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 220 (230)
Q Consensus 153 ~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~-~L~~-~g~~L--~d~~~L~~~~i~~g----~~i~ 220 (230)
++++|.+.+| .++.+.++++.||.+|+..+....+++...+ .|.. .+..+ .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 4578888888 5788999999999999999999999988874 4443 34444 45666666655444 3678
Q ss_pred EEEEecCC
Q 026933 221 LVLRLRGG 228 (230)
Q Consensus 221 l~~~~~~g 228 (230)
+..++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888886
No 117
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00032 Score=46.03 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=66.5
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..+.+.|...++..+-+.+..++|...|....+.+.|-..+..|+.|+|+.++.++|..+.+..+++.|.++...
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQ 97 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ 97 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHH
Confidence 356677777888999999999999999999999999999999999999999999999999999999987665433
No 118
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.11 E-value=0.0039 Score=40.94 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=54.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccC---CccccccccccCCeEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~l~d---~~~l~~~~i~~~~~i~l 69 (230)
+|.|+..+|....-..+.++|+.+|...|....+-+....... |..+.+.+ +.||.+.|+.+..++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999998765443333322 56677753 58999999998888765
No 119
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.08 E-value=0.0038 Score=40.95 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.7
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~l 221 (230)
..+.++.++|+.+.-.++.++|++++.+-|....+-. ..+.|+ |..+.+.+ ++||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4577888899999999999999999999998775433 557777 67777753 58999999999999876
No 120
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.06 E-value=0.0045 Score=40.62 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=53.2
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC-CCCCeEEE--ecCcccCC-CcchhhcccccCC
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~ 141 (230)
..+|.|+..+|+.+.-.++.++||++|.+-|....+- ......|. |..+.+.| +.||++.|+.+..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 4578899999999999999999999999999987643 23556776 66787754 7899999998643
No 121
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.99 E-value=0.007 Score=39.83 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=58.9
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~ 146 (230)
.-+|.|+.++|+...-.+..++++.+|-..+.. .|.+++...|+ |-.+.+. .+.||++.|+.+.+++.|-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 347889999999999999999999999999988 57888999988 5566663 3579999999999988664
No 122
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.99 E-value=0.007 Score=39.44 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=49.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccC---CccccccccccC
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKE 64 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~l~d---~~~l~~~~i~~~ 64 (230)
+|.|+..+|..+.-..+.++||.+|...|.....-+.....+. |..+.+.+ +.||.+.|+.++
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 5789999999999999999999999999998765433333322 55677754 799999999943
No 123
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.98 E-value=0.0074 Score=39.31 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=51.1
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCC
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKES 141 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~ 141 (230)
..|.|+..+|+.+.-.++.++|+.+|..-|.....- .....|. |..+.+. .+.||++.|+.+..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 468889999999999999999999999999876543 5556776 5567774 48899999999533
No 124
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.96 E-value=0.0078 Score=40.07 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=55.4
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe--cCcccC--------CCcchhhcccccCCceEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--------DGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~--------d~~~l~~~~i~~~~~i~l 145 (230)
..+|.++.++|+.+.-.+..++|+++|..-|.. .+..+....|+. ..+.+. .+.||++.|+.+..++.|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 467888999999999999999999999999964 455667888874 346674 367999999998776654
No 125
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.92 E-value=0.0068 Score=39.89 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.4
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~ 223 (230)
-.+.++.++|+...-....++++++|..-+.. .|.+++.+.|+ |-.+.+ +.+.||.+.|+.+.+++.+--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 35788899999999999999999999999998 57888999998 656666 345899999999999998753
No 126
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.88 E-value=0.011 Score=38.91 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=58.5
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~ 146 (230)
+..+|.++.++|..+.-.+..++++.+|-.-+... |.++...+|+ |--+.+. .+.||.+.|+.+..++.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 34578889999999999999999999999999875 7777888887 6667663 3679999999988887653
No 127
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0022 Score=49.07 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.++.+.+.+...+|+.++|.++.+..|+.+..|+++|+|+.+-|...|.+++|..+.+..+.+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 3667788889999999999999999999999999999999999999999999999987666543
No 128
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.87 E-value=0.0074 Score=39.58 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=50.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceeEE--ecCccccC-CccccccccccCC
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip-~~~q~l~--~~g~~l~d-~~~l~~~~i~~~~ 65 (230)
+|-|+..+|..+...++.++||.+|...|....+-+ ...-.|. |-.+.+.+ +.||.+.|+.+..
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 588999999999999999999999999999876433 1223443 66777766 6899999998543
No 129
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.85 E-value=0.0086 Score=39.36 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=58.5
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~ 222 (230)
...+.++.++|+...-....++++++|..-|... |.++..+.|+ |-.+.+ +.+.||.+.|+.+..++.|-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567888899999999999999999999999876 7778889998 666666 34679999999999998763
No 130
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.81 E-value=0.0026 Score=50.02 Aligned_cols=69 Identities=28% Similarity=0.406 Sum_probs=53.9
Q ss_pred CEEEEEccCCc-EEE-EEecCCCcHHHHHHHh-hhhhCCCCCceeEEe----cCccccCCccccccccccCCeEEE
Q 026933 1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~-~~~-~~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~----~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|.|++...+++ ... ...+..+|++|++.++ .+...+.+..+|+.+ +|+.+-|+.+|++|+..++.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 78999888763 333 6778889999999554 555778887776664 489999999999999999977655
No 131
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.79 E-value=0.011 Score=46.59 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=56.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC---ceeEE--ecC---ccccCCccccccccccCCeEEEEEEec---------
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLR--------- 74 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~---~q~l~--~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~~--------- 74 (230)
.+.+.|+.+.||+||-.++....+++.+ .-+++ +++ +.+..+..+.+. .+...+.+-.-+.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 5789999999999999999999999875 33433 344 345666667655 2222333321121
Q ss_pred -CCeeeEEEcc-------CCcEEeeccCccCcHHHHHHHHhhHhCCCC
Q 026933 75 -GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 75 -~~~~v~v~~~-------~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
+.+.|.|... .|-+|.+.|.+.+|.+++|++|+++.|++-
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233444322 367788999999999999999999999874
No 132
>PRK06437 hypothetical protein; Provisional
Probab=96.61 E-value=0.023 Score=35.98 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=48.0
Q ss_pred EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
++...++...++++...|+++|-+.+ |+++....+..+|.... .++-+++|+.|.++- ..|||
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~-~V~GG 67 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE-VFSGG 67 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEe-cccCC
Confidence 34445566788888889999887554 78888888889999887 566789999998776 44444
No 133
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.56 E-value=0.01 Score=37.63 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=55.2
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC--C---CCCeEEEecCcccCCCcchhhcccccCCceEE
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--P---PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~---~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
++-++..+|.++.+.++...++..|-..+.+...+ + -+.++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45556678999999999999999988888777653 2 23467778899999999999999999997754
No 134
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.52 E-value=0.006 Score=41.63 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=38.8
Q ss_pred eEEEEee--ccccHHHHHHHhchhcC--CCCCceEEEECCeecCCCCcccccC
Q 026933 164 TITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 164 ~~~~~v~--~~~tV~~LK~~i~~~~g--i~~~~~~L~~~g~~L~d~~~L~~~~ 212 (230)
..++++. .+.||..||.+|.+..+ ..-.+++|+|.|+.|.|+..|..--
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 3566666 78899999999999984 3345789999999999988776553
No 135
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.39 E-value=0.029 Score=37.35 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=52.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc--------CCccccccccccCCeEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~--------d~~~l~~~~i~~~~~i~l 69 (230)
+|-|+..+|....-....++||.+|...|... +-.+..-.|. |--+.+. .+.||.+.|+.+...+.+
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 68899999999999999999999999999754 4445555555 4456664 368999999998777654
No 136
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.17 E-value=0.014 Score=46.09 Aligned_cols=69 Identities=29% Similarity=0.400 Sum_probs=49.1
Q ss_pred eeeEEEccCC-cEEe-eccCccCcHHHHHHHHhhHh-CCCCCCeEEE----ecCcccCCCcchhhcccccCCceEE
Q 026933 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g-~~~~-~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~----~~g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
|.|++...++ .... ...+..+|++|++.++.++. .+.+.++++. -.|+.+-|+.+|++|+..+|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566655544 2333 56777889999997776654 5777555544 4689999999999999999976644
No 137
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0096 Score=45.71 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=56.4
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
.++.+.+.+...+|+.++|..+.+..|+++--|+++++|..+-|...|.+++++.|+...+-.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 456688888899999999999999999999999999999999999999999999997666544
No 138
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.06 E-value=0.065 Score=42.18 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=57.1
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhCCCCC---CeEEE--ecCc---ccCCCcchhhcccccCCceEEEEE------ee--
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLR------LR-- 150 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~~l~~~~i~~~~~i~l~~~------~~-- 150 (230)
+.+.+-++.+.||++|...++++.+++.+ ..++. ++++ .+..+.++.+. .+...+.+-.- ..
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998765 45554 4553 46677777775 23223322211 11
Q ss_pred --cceeEEEeee-------cCceEEEEeeccccHHHHHHHhchhcCCCC
Q 026933 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 151 --~~~~i~v~~~-------~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~ 190 (230)
+...+.|... .|-.+.+.+.+..|+.++|++|++++|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233333332 255688899999999999999999999863
No 139
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.92 E-value=0.072 Score=33.88 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=52.3
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcC--CCC-C--ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPP-D--QQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~g--i~~-~--~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
+-.+...|.++.+.++...++..|-..+.+... +++ + .++..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 344566789999999999998888777666543 333 2 356668889999999999999999999865
No 140
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.90 E-value=0.097 Score=42.25 Aligned_cols=107 Identities=17% Similarity=0.349 Sum_probs=72.0
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC------cccCCCcchhhcccccCCceEEEEEeec------------
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 151 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~~l~~~~i~~~~~i~l~~~~~~------------ 151 (230)
.+-|+.+++|+++-..|.+..|+|++.--++|.- ..++...++....+.+|+.|.+-.....
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 3567888999999999999999999877666642 4467899999999999998866553321
Q ss_pred --------ceeEEEeee---cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 152 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 152 --------~~~i~v~~~---~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
.+.+.++.. .+..+.+.++...|-.+|-++|+++.+++|...+|.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 034444432 234799999999999999999999999999999987
No 141
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.83 E-value=0.065 Score=34.91 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=50.7
Q ss_pred EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE----CC--eecCCCCcccccCCCCCCEEEEEEE
Q 026933 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~----~g--~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
|+.++|+..++++++++|+++|-++|+...|+.... +-|.+ .+ .-|+.+++|.++....+....+.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 456788899999999999999999999999986544 45556 22 3468889999998874444444444
No 142
>PRK06437 hypothetical protein; Provisional
Probab=95.46 E-value=0.15 Score=32.16 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=48.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.-+++..+++...+++..+.||.+|=+. .|+++..-....||..+. .++-+++++++.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 44566666778899999999999998766 688887777778998887 556677888888764
No 143
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.057 Score=41.49 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=50.0
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g-----~~L-~d~~~L~~~~i~~g~~i~l~~ 223 (230)
...+.++..|++++|.+++..+|.+++.+.|. |.+ ..| +++..|..|...+|..||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 45567788999999999999999999999886 766 355 567899999999999998853
No 144
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.07 Score=41.02 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=50.1
Q ss_pred EeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecC-----ccc-CCCcchhhcccccCCceEEEEEe
Q 026933 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L-~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.....+.+.|+++||.+++-.+|.+++.+.|. |.| ..| +++..|..|...+|-.||++-..
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 45567889999999999999999999999987 555 235 45778999999999988887543
No 145
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=95.26 E-value=0.09 Score=32.40 Aligned_cols=68 Identities=22% Similarity=0.434 Sum_probs=51.2
Q ss_pred cCceEEEEeeccccHHHHHHHhchhc---CCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~---gi~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+...++.+.+....-...+--+.. |-|+++..|- -.|..++-++.+.+||+.+|-++++.++.--|
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAGva 75 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAGVA 75 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecccC
Confidence 46666777776665555555444444 4688888887 78899999999999999999999999885443
No 146
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.23 E-value=0.04 Score=35.82 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=48.2
Q ss_pred eeccccHHHHHHHhchhcC-CCCCceEEEECCeecCCCCccccc-CCCCCCEEEEEEEec
Q 026933 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLR 226 (230)
Q Consensus 169 v~~~~tV~~LK~~i~~~~g-i~~~~~~L~~~g~~L~d~~~L~~~-~i~~g~~i~l~~~~~ 226 (230)
|+++++|.++++.+..... -....+.|.++|..|+|...|++. |+++|+.+.+..++.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 4678999999999988754 355678889999999999999888 589999999886653
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.12 E-value=0.17 Score=33.14 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=43.4
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
+...++-...+..||+.++.+.++..+.+.++..+..|+++++|-+.||+-...+.+.+..
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 4555666778999999999999999999999888877999999999999998888887654
No 148
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.95 E-value=0.12 Score=33.72 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++.+.+++..+.++|..+|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999997643
No 149
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.81 E-value=0.064 Score=34.84 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=45.6
Q ss_pred cCccCcHHHHHHHHhhHhC-CCCCCeEEEecCcccCCCcchhhcc-cccCCceEEEEEe
Q 026933 93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL 149 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~~l~~~~-i~~~~~i~l~~~~ 149 (230)
|.++++|.++++.+..... ..-....|.++|+.|++...+++.. +++++++.++.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5678999999999988765 4556788999999999988888774 7778877776544
No 150
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.76 E-value=0.17 Score=33.40 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~ 46 (230)
|+|.+ +.+|....+.+.++++..+|+++|.+.+++.. ..-.|.|.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 44555 45788999999999999999999999999975 34455554
No 151
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.62 E-value=0.17 Score=40.82 Aligned_cols=106 Identities=17% Similarity=0.357 Sum_probs=74.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEecC------ccccCCccccccccccCCeEEEEEEec--------------
Q 026933 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLR-------------- 74 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g------~~l~d~~~l~~~~i~~~~~i~l~~~~~-------------- 74 (230)
+-|+..++|.++=..|.+..|.|++...++|.- ..++...++....+.+|+-|..-....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 678999999999999999999999888877753 457788999999999999887776442
Q ss_pred ------CCeeeEEEcc---CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE
Q 026933 75 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 75 ------~~~~v~v~~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.|.++.. .+..|.+.++...|-.+|-++|+++.+++|...+|+
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1255666542 345799999999999999999999999999999987
No 152
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.34 E-value=0.35 Score=31.36 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=47.0
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceeEEe--c--C--ccccCCccccccccccCCe
Q 026933 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--A--G--KQLEDGRTLADYNIQKEST 66 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-~q~l~~--~--g--~~l~d~~~l~~~~i~~~~~ 66 (230)
|..++|...++++++++|+.++=.+|.+..|+... .--|.+ . | .=|+.+++|.++.......
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP 69 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence 56789999999999999999999999999999843 345666 1 2 2267788888887663333
No 153
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.22 E-value=0.16 Score=33.75 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=37.8
Q ss_pred eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC---CCeEEEec
Q 026933 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 122 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~ 122 (230)
+.++..+|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 566788999999999999999999999999999886 45666663
No 154
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.029 Score=46.17 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=48.4
Q ss_pred CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhC-C-CCCCeEEEecCcccCCCcchhhcccc
Q 026933 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~-i-~~~~q~L~~~g~~L~d~~~l~~~~i~ 138 (230)
.+.+.++..+. +.+.+..+...||++||..++..+. - -..+|||+|.|+.|.|...++|.=.+
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 34566666654 4467777888999999999998874 2 24569999999999999998886543
No 155
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.04 E-value=0.48 Score=31.56 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=45.5
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECC----eec-CCCCcccccCCCCCCEEEEEEEecCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG----KQL-EDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g----~~L-~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
..++..++..+||..+.+.+.+.+.+ +...+|- +.. ..| +.+.|+.+.|+.+|.+|.+-.|-.-|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35778889999999999999999999 6667774 222 345 56689999999999999887776555
No 156
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.01 E-value=0.23 Score=32.26 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=44.4
Q ss_pred eEEEEeeccccHHHHHHHhchhcCC----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++...|+.+|.+.+...++- ......+..+|+... .+.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3566777788999999999988632 234566668888776 45679999999887766555
No 157
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.00 E-value=0.85 Score=28.95 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=42.4
Q ss_pred eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...+++++..|+.+|-+.+ ++++....+..+|..... +.-+++||.|.++--..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 5677788888999998666 667777777799988753 6668999999877644443
No 158
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.78 E-value=0.33 Score=31.85 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.....++=.+++..||..++.+.++.-+.-.++++...|+++++|.+-++..+..+.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3456677889999999999999999999999999887799999999999999888877643
No 159
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.48 E-value=0.31 Score=31.79 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=34.1
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
++.|+++++.+..+|..+|.++.++|++.-.|.|..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 899999999999999999999999999998999975
No 160
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=93.34 E-value=0.63 Score=31.02 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=42.3
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-c---C-ccc-CCCcchhhcccccCCceEEEEEee
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQL-EDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~---g-~~L-~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
..+...++..+||+.+...+.+.+.| ..+.||-- . + ..| +.+.|+.+.|+.+|-.|.+-.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 35677789999999999999999999 66688752 1 2 235 446799999999998776655443
No 161
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.10 E-value=0.29 Score=31.69 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=43.3
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCC----CCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+++|+.|.++....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4667788889999999999988642 334566778888876 3456889999988755444
No 162
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=92.96 E-value=0.68 Score=28.85 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=41.8
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.++++...|+.+|.+.+. +++....+..+|+....+ .-.+.-+++||.|.+.--..||
T Consensus 8 ~~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 345556789999887664 677778888999877643 3445679999999887755554
No 163
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=92.67 E-value=0.52 Score=31.32 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=34.0
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
..++...|+++-+.+.|++.+.+|++.|.+++|+...
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4678889999999999999999999999999999873
No 164
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.58 E-value=0.76 Score=30.28 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=35.1
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecCc
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 124 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~ 124 (230)
.+|..+.+.++++.+..+|++.|++++++.. ....|.|..-
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 4677899999999999999999999999875 6788888653
No 165
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.51 E-value=1 Score=28.61 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=44.2
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
|++.+.... ....++++...|+.+|-+.+ ++++....+..||..... +.-+++|+.|.++....
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~ 68 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVS 68 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEcccc
Confidence 455553222 24567888889999988665 777777777789988854 45577899887764433
No 166
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.45 E-value=0.66 Score=30.16 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+|.+.. +|.++.+.++++.|..+|+.+|.+.++.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344543 678999999999999999999999999987667777753
No 167
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=92.31 E-value=0.94 Score=28.13 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=40.4
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
++++...|+.+|.+.+ ++++....+..+|.....+ ...++-+++||.|.++--..||
T Consensus 8 ~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 8 VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 3445667899988765 4667777777999887532 3456779999999887755444
No 168
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.20 E-value=0.7 Score=29.61 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=39.1
Q ss_pred EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC
Q 026933 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g 199 (230)
.|..++|+...+.+.+..|+.++-++++++.|+.++...+...|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 46678899999999999999999999999999999998887554
No 169
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=92.15 E-value=0.69 Score=28.58 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=48.0
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHh---CCCCCCeEEE-ecCcccCCCcchhhcccccCCceEEEEE
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~---~i~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.+|+...++.+.+....-..++--+.. +-|++.-.|. -+|..++-++.+.|||+.++-++.+.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 367777888777776555555544444 4688877776 5788899899999999999987766554
No 170
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.13 E-value=0.52 Score=30.85 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCC--CceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-ip~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+... | +...+++..+.||.+|.+.+...+. +.. ..-.+..|++... .++-+.+++++.++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 678888654 4 5677888899999999999977651 111 1112446776653 34456778888776
Q ss_pred EEe
Q 026933 71 LRL 73 (230)
Q Consensus 71 ~~~ 73 (230)
...
T Consensus 77 Ppv 79 (82)
T PLN02799 77 PPI 79 (82)
T ss_pred CCC
Confidence 543
No 171
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.98 E-value=1.3 Score=27.60 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=42.2
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+.+ + ..|+++|.+.+ ++++....+-.++.... .....+.-+++||.|.++--..||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 4565665 3 35899988765 56666666778888876 345667789999999887655444
No 172
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.83 E-value=0.43 Score=40.38 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC-CCCCCeEEE--ecCcccCC-CcchhhcccccCCc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~~ 142 (230)
+.-.|.|+..+|..+...++.+.||.+++..|..... -+...+.|+ |-.++|.| +.||++.|+.+-..
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 3467888999999999999999999999999998775 444467776 67788855 77999999987543
No 173
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.54 E-value=0.99 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.8
Q ss_pred eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+.++. ++....+.++.+.|..+|+.+|+++++.+.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 44443 667888999999999999999999999887788888875
No 174
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.52 E-value=1.1 Score=27.87 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+.+ + ..|+.+|...+ ++++....+-.|+..+. .....+.-+++|+.|.++-...|
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccC
Confidence 5776666 3 35899988764 66666666778887775 33455677889999988754443
No 175
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=91.44 E-value=0.85 Score=27.73 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+| +.-.+++..+.|..+||.++... .-.+.++|-+..++..|. +++++.+.
T Consensus 1 M~I~v-----N~k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~-----e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV-----NEKEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELK-----EGDEVFLI 54 (57)
T ss_pred CEEEE-----CCEEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccC-----CCCEEEEE
Confidence 66776 45567888999999999997653 236789998887766654 45666554
No 176
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.24 E-value=0.79 Score=29.37 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.3
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+.|-.++|..-.+.+.|+.||.|+=.++.+..|+.++.=.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456678999999999999999999999999999999888888754
No 177
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.12 E-value=0.64 Score=29.62 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.7
Q ss_pred EEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
.|..++|+...+.+.+..|+.++-..+.++.|+.++...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45578999999999999999999999999999999999888755
No 178
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=90.65 E-value=0.78 Score=41.93 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=39.6
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc
Q 026933 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~ 51 (230)
+.++..+.+-++++.|+..++..|+..+|||.+.|.|+|.|....
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 345778889999999999999999999999999999999875543
No 179
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.96 Score=41.39 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=97.1
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--e--cCccc--cCCccccccccccCCeEEEEEE--e-cCC--eeeE
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVLR--L-RGG--MQIF 80 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~--~g~~l--~d~~~l~~~~i~~~~~i~l~~~--~-~~~--~~v~ 80 (230)
.+.+.|+.-.+++.+|+.|++..++|.+.-+++ + ||..+ .++.||+. ..++.+|.+.+- + .+. ++|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 566889999999999999999999998876665 2 22222 34566654 345555544431 1 122 3333
Q ss_pred EE-cc-CCc-E----EeeccCccCcHHHHHHHHhhHhC--------CCCCCeEEEec-----Cccc-CCCcchhhcc---
Q 026933 81 VK-TL-TGK-T----ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQL-EDGRTLADYN--- 136 (230)
Q Consensus 81 v~-~~-~g~-~----~~~~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~L-~d~~~l~~~~--- 136 (230)
.- .. +.+ . +..-+..++|+++.|..+-.... +...+.|+... |+.+ +++.++.|..
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 32 11 111 1 23446788999998876554432 23333333322 2333 3344444433
Q ss_pred ---------------cccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 137 ---------------IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 137 ---------------i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
-++++.+.+++|...+-.+.+. .--++.++ .+.+.++++.+.+-.|||.++.-+.
T Consensus 1036 ~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~----pFQEV~Ld-~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVN----PFQEVLLD-ANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred HHHHHHHHHHhhcccCCCCccchhhheeccccceecC----CceeEEec-CcchHHHHHHHHHhcCCchhhhhhh
Confidence 1223333333333222211111 11122222 4568999999999999999987665
No 180
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=90.53 E-value=0.077 Score=43.51 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=0.0
Q ss_pred cccHHHHHHHhch----------hcCCCCCceE-----EEECCeecCCCCcccccCCC-------CCCEEEEEEEecCCC
Q 026933 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGGG 229 (230)
Q Consensus 172 ~~tV~~LK~~i~~----------~~gi~~~~~~-----L~~~g~~L~d~~~L~~~~i~-------~g~~i~l~~~~~~g~ 229 (230)
+.+|.++|..++. ..++|.+.++ |+|+-+.+-|+++|.+..-. .+.++.+.+-..||+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 5899999999999 7889999999 99999999899999888654 577777776666664
No 181
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=90.43 E-value=1.3 Score=28.30 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=48.2
Q ss_pred eEEEEeeccccHHHHHHHhchhcCC--CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...+.+....||.+|.+.+..++.- ......+..+|+...+ .-.+.-+++||.|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677788899999999999998631 2366778899988887 3666778999999886644444
No 182
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.11 Score=42.89 Aligned_cols=61 Identities=23% Similarity=0.403 Sum_probs=45.8
Q ss_pred ceeEEEeeecCc--eEEEEeeccccHHHHHHHhchhcC-CC-CCceEEEECCeecCCCCcccccC
Q 026933 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 152 ~~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~g-i~-~~~~~L~~~g~~L~d~~~L~~~~ 212 (230)
++.++++..+.+ ..++..+...||++||..++..+- -| +..|+|+|.|+.|.|+..|.+.-
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 345666666543 456666678899999999998873 23 35799999999999999887753
No 183
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.26 E-value=1.8 Score=28.76 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=31.1
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
|.||.. +|.+..+.|+++.+..+|..+|.+.+++.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 455554 79999999999999999999999999995
No 184
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.17 E-value=1.2 Score=28.36 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.|-..+|+...+.+.|+.|+.|+=+++.++.|+.++.-.++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45678999999999999999999999999999999888888755
No 185
>PRK07440 hypothetical protein; Provisional
Probab=89.95 E-value=2.1 Score=27.18 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=42.5
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.++.+..|+.+|-+ ..++++....+-.++..+.- ....+.-+++||.|.++--..||
T Consensus 14 ~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 14 RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 55566788888765 44678888888899988863 35667779999999887755554
No 186
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=0.69 Score=38.30 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=47.2
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECC--------eecCCCCcccccCCCCCCEEEEEE
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------KQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g--------~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
...+.-.-||.++++.+..+.|+.+.+++|++-. ..++.+++|.+|.|++|+.+.+--
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 3445556799999999999999999999998632 345667899999999999987643
No 187
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=89.78 E-value=3.1 Score=31.94 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=52.2
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEEC---C---eecCCCCcccccCCC-CCCEEEEEE
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~---g---~~L~d~~~L~~~~i~-~g~~i~l~~ 223 (230)
+..+.|...+|+...+.+++.+|++++.+.++.+.|++... +-|.+- + .-++...++.+...+ ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 45677888899999999999999999999999999996533 344421 1 245666777777665 344555554
Q ss_pred E
Q 026933 224 R 224 (230)
Q Consensus 224 ~ 224 (230)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 4
No 188
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=89.64 E-value=3.8 Score=26.10 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=38.6
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC--eecCCCC
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGR 206 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g--~~L~d~~ 206 (230)
+.+..++++...+.+.+..|+.+.-..+.++.|+.++...++..| +.++-+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 456678899999999999999999999999999999988776444 3444333
No 189
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.50 E-value=2.4 Score=26.28 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=41.6
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.+++.+..|+.++-+. .++++....+..+|....-+ .-.+.-+++||.|.++--..||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 3455667788887654 47888888888998777643 3455668999999887755544
No 190
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.18 E-value=1.6 Score=28.45 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred ceEEEEeeccccHHHHHHHhchhcC-CCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
....++++...|+++|.+.+..+.. +.. ....+..+++... .+.-+++|+.|.+.--..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 3466777788999999999977651 111 2234557777654 34568899999776644443
No 191
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=89.18 E-value=2.3 Score=28.16 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=44.8
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ ++++..|+.+|-+. .++++....+-.+|..+. ....+++-+++||.|.++--..||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45444 44567788887664 467888888889998885 456778889999999887755544
No 192
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.12 E-value=2.1 Score=26.64 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=40.9
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ ++++..|+.+|-+. .++++....+..++....-+ ..+.+ +++||.|.++--..||
T Consensus 6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence 44444 44466788777654 47888889998999877533 23455 9999999887644443
No 193
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.06 E-value=2.6 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=42.3
Q ss_pred eEEEEeecc-ccHHHHHHHhchhcC-C-C-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~-~tV~~LK~~i~~~~g-i-~-~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++.. .|+.+|...+.++++ + . .....+..+++...+ +.-+++|+.|.+.--..||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356777766 899999999998864 1 1 133455677776663 5678999999877655554
No 194
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.92 E-value=0.65 Score=38.93 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.6
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCC--CcchhhcccccCCceEEEEE
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~~l~~~~i~~~~~i~l~~~ 148 (230)
....+++.+..+-....|+..+....|++.+..-|+|+++++.. ...+..+|+..++.+.+--+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 55678888888889999999999999999999999999999865 46799999999998866544
No 195
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=88.87 E-value=2 Score=27.91 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=41.4
Q ss_pred EEeeccCcc-CcHHHHHHHHhhHhC-C-C-CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++.. .||.+|++.+.++++ + . .....+..|++...+ +.-+++|+.|.++....|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 356778776 899999999999874 1 1 133456678877764 456788999987754444
No 196
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=88.40 E-value=1.2 Score=28.53 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=47.4
Q ss_pred EEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
...+.+....||.+|.+.+..+++ .......+..||+...+ .-.+.-+++|+.|.++....|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 556778889999999999988874 13356788899988877 355677889999988755444
No 197
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=88.19 E-value=0.15 Score=41.92 Aligned_cols=62 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred eeeEEEccCCcEEeeccC---c--cCcHHHHHHHHhh----------HhCCCCCCeE-----EEecCcccCCCcchhhcc
Q 026933 77 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~~l~~~~ 136 (230)
+.|+++...+..+.+.+. + +.+|.++|..+++ ..++|.+.++ |.|+-+.+.|.++|.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 556666655544444332 2 5789999999999 8889999999 999999999999998875
Q ss_pred cc
Q 026933 137 IQ 138 (230)
Q Consensus 137 i~ 138 (230)
-.
T Consensus 159 ~~ 160 (309)
T PF12754_consen 159 AD 160 (309)
T ss_dssp --
T ss_pred hc
Confidence 43
No 198
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=88.04 E-value=4.2 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=41.4
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ ++.+..|+.+|.+.+ +.+.....+-.++.... ...-++.-+++||.|.++--..||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEEccCC
Confidence 44444 445667899888653 45556677778998875 234556679999999887655444
No 199
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=87.77 E-value=4 Score=25.62 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=42.7
Q ss_pred cCceEEEEeecc-ccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~-~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+|+.+ +++.. .||.+|-+ ..++++....+-.++..+.- ....++-+++||.|.++--..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 45544 44444 57887765 34778888888899988864 35667779999999887755544
No 200
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=87.64 E-value=1.9 Score=26.82 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=41.6
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+ +++...|+.+|...+ +++.....+..+|+....+ ...+.-+++|+.|.++....|
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 45444 456678999988774 5778888888999877543 234456889999988755444
No 201
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=87.63 E-value=2.6 Score=25.61 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=33.3
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.+++..+.|..+||..+... .-.++++|-...++.. +++|+.|.+.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~-----L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIE-----LKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccc-----cCCCCEEEEE
Confidence 56778888999999886542 2367899988877644 5567777554
No 202
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=87.58 E-value=0.91 Score=38.08 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=62.3
Q ss_pred CEEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC--ccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~--~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.++|.+. .-..+++++..+-....++..+...+|++.+.--+.|++..+.+. .++.++|+..++.+.+.-+..
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 55666544 456788999999999999999999999999988999999888775 779999999999988775543
No 203
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.36 E-value=3.4 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=38.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcch
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l 132 (230)
++|.+. .+|....+.++++.+..+|..+|.+++++. ....+.|... .|-.|+
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti 54 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITM 54 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccc
Confidence 444453 367788999999999999999999999985 5667767654 444343
No 204
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.19 E-value=2.9 Score=27.58 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=41.5
Q ss_pred eEEEEeeccccHHHHHHHhchhcCC------C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi------~-----~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...++++ ..||.+|.+.+.+++.- . .....+..+|+..+.+.. .-+++|+.|.+.--..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566665 78999999999888631 0 123556678876654321 568999999877755554
No 205
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.08 E-value=3.4 Score=27.29 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=41.3
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhCC------C-----CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++ ..||.+|.+.+.++++- . .....+..||+....+.. ..+++|+.|.++....|
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34567776 88999999999888641 0 123556678877654421 56889999988755544
No 206
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.72 E-value=5.3 Score=24.81 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
+|+.+.+ ++..|+.+|-.. .++++....+.+++..+..+. ...+ +++|+.|.++-..
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAV 62 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeec
Confidence 5665544 567788887654 588999999999998775432 2345 8999999887543
No 207
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=86.47 E-value=5.3 Score=25.23 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=43.4
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+++++...|+++|-. ..|++++......+|.....+ .-.+.-+++||.|.++--..||
T Consensus 11 ~~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 456666689998864 457888888888999888743 3566778999999887755554
No 208
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.41 E-value=6.6 Score=30.08 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=34.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
.+.|..++|.+..+.+++.+|+.++-..+....|++.
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 4778889999999999999999999999999999964
No 209
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.00 E-value=3.4 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=32.0
Q ss_pred CcEEe-eccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 86 GKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 86 g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+.... +.++.+.|..+|+.+|++.++.+.....|.|..
T Consensus 10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 33444 888888899999999999999998888998864
No 210
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=85.94 E-value=4.2 Score=25.88 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+.|-.++|....+.+.|+.||.|.=.++.+..|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456668899999999999999999999999999999877766544
No 211
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=85.80 E-value=3.1 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026933 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~ 45 (230)
++..+|++.-+.|+.+.|..+|+.++.+.++++.. ..|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999999876 55555
No 212
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=85.60 E-value=3.2 Score=25.68 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=40.8
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+ +++...|+.+|... .++++....+..+|..+..+ ...++-+++|+.|.++....|
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 45544 44667789998876 45777777777888877432 234466889999988754443
No 213
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=85.27 E-value=1.6 Score=36.99 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=52.8
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE--ECCeec-CCCCcccccCCCCCCEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FAGKQL-EDGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~--~~g~~L-~d~~~L~~~~i~~g~~i 219 (230)
-.|.++..+|+.....++.+.||.+++.-|+..-.-.+. .+.|+ |-.+.| +++.||.+.|+.+-..+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 467889999999999999999999999999987644343 45554 556777 67899999999876544
No 214
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=84.99 E-value=2.4 Score=27.26 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=39.2
Q ss_pred EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC
Q 026933 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~ 205 (230)
.|..++|+...+.+.+.+|++++-+..+++.++.|+...|--+-..++|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 35567888999999999999999999999999999887664332224443
No 215
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=83.79 E-value=4.6 Score=26.88 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=30.5
Q ss_pred EEeec-cccHHHHHHHhch-hcCCCC-C---ceEEEECCee----cCCCCcccccCCCCCCEEEE
Q 026933 167 LEVES-SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 167 ~~v~~-~~tV~~LK~~i~~-~~gi~~-~---~~~L~~~g~~----L~d~~~L~~~~i~~g~~i~l 221 (230)
+.++. ..|+.+|-++|.+ +.|... + .-.++|.... -...++|+++||.+|+.+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 34443 5699999888766 566433 2 3344454432 23468999999999998876
No 216
>KOG4261 consensus Talin [Cytoskeleton]
Probab=83.65 E-value=4.9 Score=37.38 Aligned_cols=108 Identities=26% Similarity=0.354 Sum_probs=81.1
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEe------cCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
+-.-++.++|+++|-+--..|.+++. .-++...|+. .|-.|+.++++.+|-+.+++++.-. ..+-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~---~k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYK---RKQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchh---hhcccce
Confidence 44457888999999998888877763 2255666653 2456789999999999999987432 2334567
Q ss_pred EeeecCceEEEEeeccccHHHHHHHhchhcCCC-CCceEEE
Q 026933 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI 196 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~~~L~ 196 (230)
++...|..-++.++...+|.+|.--|+.+.||. .+.+.|.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv 129 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV 129 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence 888899888999999999999999999998874 2344443
No 217
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=83.31 E-value=8.4 Score=23.78 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=40.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+.+ ++..+.||.++=.. .+++++.-.+.+||..+... ...+.-+++++++.++-.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHA 62 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEE
Confidence 56644 56678899988765 68888877777888665543 345566788898887643
No 218
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=83.15 E-value=2.7 Score=27.33 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.6
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567788899999999999999999999999999864
No 219
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=82.39 E-value=4.5 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=28.6
Q ss_pred ccCCcEEEEEecC--CCcHHHHHHHhhhhhCCC
Q 026933 7 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 7 ~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gip 37 (230)
+.+|.+..+.+++ ..+..+|++.|...++++
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 5679999999999 779999999999999999
No 220
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=82.26 E-value=5.6 Score=25.77 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=32.3
Q ss_pred CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933 9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~ 46 (230)
+|.... +.+.++.|..+|+.+|...++.+...-.+.|.
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 455555 99999999999999999999999777777775
No 221
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.03 E-value=3.4 Score=33.46 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=56.5
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l 221 (230)
-.+.++..+|++...++++..|...++.-|.-..+...+.+.|. |-.... +-.++|..+++-+-+++.+
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 35778889999999999999999999999999998877777776 433444 3358999999999888765
No 222
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=81.45 E-value=3.7 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=37.9
Q ss_pred cCc-cCcHHHHHHHHhhHh----CCCC------CCeEEEec----------------C-ccc---CCCcchhhcccccCC
Q 026933 93 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES 141 (230)
Q Consensus 93 v~~-~~tV~~lK~~i~~~~----~i~~------~~q~L~~~----------------g-~~L---~d~~~l~~~~i~~~~ 141 (230)
++. +.||.+|++.+.+.. |+|| +..++.+. . ..| +++.+|.++|+.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 776 889999988877754 4544 22333321 1 456 678899999999998
Q ss_pred ceEEEE
Q 026933 142 TLHLVL 147 (230)
Q Consensus 142 ~i~l~~ 147 (230)
.|.+.-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 886653
No 223
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=81.26 E-value=7.4 Score=24.94 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=38.3
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
|-.++|.+..+.+.|+.||.|+=.+.-+..|++++.-.++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 3467899999999999999999999999999999888888655
No 224
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=81.13 E-value=3.7 Score=26.65 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=33.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
-|+.+.+.++.+..+|...|.+++..|++.-.|.|..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4677999999999999999999999999999999853
No 225
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.08 E-value=7 Score=25.10 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=32.9
Q ss_pred EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933 3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~ 46 (230)
|.+.. +|..+.+.+. .+.|..+|+.+|.+.++++...-.+.|.
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 44433 4678888888 9999999999999999998644445553
No 226
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=81.02 E-value=10 Score=23.26 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=36.9
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.+++++..|+++|.+.+. ++ ....+..+|.....+ .-.+.-+++||.|.++--..||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 345566778999887653 33 235666888776532 2344558999999887755544
No 227
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=5.9 Score=32.12 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=56.0
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l 145 (230)
.-.+.|+..+|+++...+++..|..+++.-|.-..+...+...|. |..+.+. -.++|...++.+.+++.+
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 356788889999999999999999999999999999887777776 3344442 257899999988887643
No 228
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=80.65 E-value=4.5 Score=37.23 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=38.2
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCccc
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
.+...+.+.++++.|...++..|...+|+|...|.|.|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 3567788999999999999999999999999999999987544
No 229
>PRK07440 hypothetical protein; Provisional
Probab=80.55 E-value=11 Score=23.85 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=44.6
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
.|.+.+ +|+. .+++...|+.+|-. ..++++....+-.+|..+.. ....+.-+++|+.|.++--..
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~ 68 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVG 68 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEec
Confidence 355554 5654 45567788888765 45788888888899977753 235556688999998775443
No 230
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=80.40 E-value=9.1 Score=33.82 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCCceeEE---ecCccccCCccccccccccCCeEEEEEEe
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----p~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
||+|... .+..++-++.+.+|.|+--.+.+..+= +.....+. ..|..|+.+.||.+.|+.+++.+++....
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 5677544 355889999999999999999888764 22222333 46899999999999999999999998643
No 231
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=79.96 E-value=3.7 Score=36.83 Aligned_cols=65 Identities=34% Similarity=0.483 Sum_probs=43.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhc--CC------CCCceEEEE--C--Ce-ecCCC-------------CcccccCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE--GI------PPDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi------~~~~~~L~~--~--g~-~L~d~-------------~~L~~~~i~~ 215 (230)
...++++|-..+||.++|++|-... +. .++..-|-| + |+ .|.|. .||.+|+|++
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3458899999999999999998764 32 234555543 2 23 45443 3899999999
Q ss_pred CCEEEEEEEec
Q 026933 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999998763
No 232
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=79.61 E-value=7.2 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=29.7
Q ss_pred cCCcEEeeccCc--cCcHHHHHHHHhhHhCCCCCCeEEEe
Q 026933 84 LTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 84 ~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
.+|....+.+++ +.+..+|++.+..+++++ .+.|.|
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 467788888888 779999999999999999 555544
No 233
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=79.14 E-value=3.5 Score=29.25 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.8
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhc
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~ 135 (230)
+-|+.+.||+++...|..+.+++++..-|+.++..+..+.++.+.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 369999999999999999999999985555666566666677654
No 234
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=79.06 E-value=8 Score=34.15 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCC------CCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi------~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
+.|... .+...+.++.+..+++|--.+-...+- .+....|. -+|..++.++||.+.||.+|+.+++.-+
T Consensus 5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 344443 345788888888999998887777653 24456776 6778999999999999999999998764
No 235
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.00 E-value=2.5 Score=35.13 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=42.3
Q ss_pred cCccCcHHHHHHHHhhHhCCCCCCeEEEec---Ccc-----cCCCcchhhcccccCCceEEE
Q 026933 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~-----L~d~~~l~~~~i~~~~~i~l~ 146 (230)
+.-.-||.+++..+..+.|+.+.+++|++- |+. .+-+.+|..|.|.+|+.+.+-
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 444559999999999999999999999863 332 344677888889999887553
No 236
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=78.98 E-value=12 Score=23.48 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCcEEeeccCcc-CcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 85 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 85 ~g~~~~~~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
+|+.+. ++.. .||.+|-+. .++++....+-.++..+..+ ...++-+++|+.|.++--..
T Consensus 6 NG~~~~--~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~Vg 65 (67)
T PRK07696 6 NGNQIE--VPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVG 65 (67)
T ss_pred CCEEEE--cCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEec
Confidence 566554 4444 578877653 67888888888999877543 35556688999998775433
No 237
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=78.13 E-value=4.3 Score=28.75 Aligned_cols=56 Identities=21% Similarity=0.479 Sum_probs=39.3
Q ss_pred eec-cccHHHHHHHhchhc----CCCC------CceEEEEC----------------C-eec---CCCCcccccCCCCCC
Q 026933 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES 217 (230)
Q Consensus 169 v~~-~~tV~~LK~~i~~~~----gi~~------~~~~L~~~----------------g-~~L---~d~~~L~~~~i~~g~ 217 (230)
++. +.||.+|++.+.+.. |++| +.+++++. . ..| +++++|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 555 789999988888765 4443 23344421 1 456 788999999999999
Q ss_pred EEEEEEE
Q 026933 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~l~~~ 224 (230)
.|.+..+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9877643
No 238
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.07 E-value=8.4 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=31.3
Q ss_pred CcEEeeccC-ccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 86 GKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 86 g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
|....+.++ .+.|..+|+.+|+++++.+.....+.|..
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 556777777 88999999999999999886666777754
No 239
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=77.84 E-value=6.4 Score=27.93 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCccccc
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~ 211 (230)
+-|+.+.||+++...|.++.+++++...|..++..+..+.++++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 468999999999999999999999886555666666666777654
No 240
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=77.65 E-value=4.7 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
++.|..++|.+..+++..+++-.++=+.+..+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 56777889999999999999999999999999999987665
No 241
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=77.17 E-value=14 Score=22.62 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=38.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+| +|+. +++.++.|+.++-..+ ++++ .-....||...... ...+.-+.+++++.++...
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~~~~-~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAY----GARP-PFAVAVNGDFVART-QHAARALAAGDRLDLVQPV 62 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhh----CCCC-CeEEEECCEEcCch-hcccccCCCCCEEEEEeec
Confidence 44444 4554 4567788999998875 4443 23445777665432 2444558889998887543
No 242
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.86 E-value=12 Score=31.35 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.1
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
+|+. +++.+..|+.+|-+. .++++....+..+|..+. .....++-+++||.|.++--..||.+
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCCC
Confidence 4444 455667788887654 478888888889999885 33566778999999999887777753
No 243
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=75.75 E-value=4.6 Score=36.26 Aligned_cols=65 Identities=34% Similarity=0.477 Sum_probs=42.0
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHh--CC------CCCCeEEEec-C---c-ccCCC-------------cchhhccccc
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKE--GI------PPDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i------~~~~q~L~~~-g---~-~L~d~-------------~~l~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +. .+++.-|-|. | + .|.|. .||++|++.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3557888889999999999997753 22 2445555432 2 2 34332 4899999999
Q ss_pred CCceEEEEEee
Q 026933 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99998887654
No 244
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=75.74 E-value=6.2 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=34.8
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~ 192 (230)
+.+.|..++|+...+++..+++..++-+.++.+.|+|.+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 3456667789999999999999999999999999998764
No 245
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=75.66 E-value=10 Score=24.85 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=40.9
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCcccCCCcchhhcccccCCceEEEE
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
+..+...++...||.++-+ ..|+|..+..++ -||+...-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 4567888999999888654 489999999776 688777543 6677899887763
No 246
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=75.45 E-value=17 Score=22.57 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=39.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+| +|+.+.+ ..+.||.+|-.. .++++..-.+-.|+..+. ...+.++-+.+++.+.++-.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEE
Confidence 45544 5665554 667899999876 455544445557776664 33355566888999888644
No 247
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=74.84 E-value=18 Score=22.78 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=40.6
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
+++++...|+++|-+. .+++++..-...||..+..+ ...+.-+++|+.|.++--.
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v 65 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVV 65 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEee
Confidence 4556666899998755 78999988999999887643 3456667888988776443
No 248
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=74.76 E-value=15 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=42.4
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEE
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l~ 222 (230)
.+.+.+......+-+-.++++.+|+....++ -.|.-.++.++-.+.-++.|+.+.+.
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 4667777767777777888899999988888 45667799999999999999999874
No 249
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=74.59 E-value=12 Score=23.99 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=37.9
Q ss_pred EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
|..++|+.-.+.+.+..||.++-.++.++.|++++...++..|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 3457888889999999999999999999999999988888665
No 250
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=74.15 E-value=10 Score=24.49 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.4
Q ss_pred EEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE
Q 026933 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.|...+|+...+.+.++.|+.++-+..+++.++.|++--|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 35568899999999999999999999999999988875444
No 251
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=73.53 E-value=5.8 Score=37.15 Aligned_cols=62 Identities=18% Similarity=0.391 Sum_probs=48.3
Q ss_pred cCceEEEEeec-cccHHHHHHHhchhcCCCCCceEEE-ECCeecCCCCcccccCC--CCCCEEEEE
Q 026933 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLV 222 (230)
Q Consensus 161 ~~~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~L~d~~~L~~~~i--~~g~~i~l~ 222 (230)
.|+..+++.+. +.|+++||.+|+++.|+....+.|+ -+|..|..++.|..|.. .+-+-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 46777777775 5699999999999999999999888 56678888899988863 244445544
No 252
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=73.49 E-value=4.4 Score=27.46 Aligned_cols=31 Identities=39% Similarity=0.803 Sum_probs=24.8
Q ss_pred eEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 42 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 42 ~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.|+|.|++|.++.+|++| +..+..-.+++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEe
Confidence 478999999999999999 7777766665543
No 253
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=72.73 E-value=12 Score=25.39 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.4
Q ss_pred EccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe
Q 026933 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
+-.+|++..+.|+.+.|..+|+.++++.++++.. +.|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4567888999999999999999999999998876 66655
No 254
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=72.46 E-value=14 Score=24.47 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=33.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q 41 (230)
|.|-..+|...++.|+..+|++++=+.+..+.+...+.-
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCC
Confidence 556668999999999999999999999999988776443
No 255
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=71.95 E-value=23 Score=22.69 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=39.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhC-CCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeEE
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 81 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v 81 (230)
+.|-.-..|+.|+.+|+.+|.+++. +=|....+.. ..|+|.. .|.+.++..+.=+......+++.+
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~---~cDLD~d~~V~DVf~~~~~vrvi~ 69 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSD---GCDLDPDFLVKDVFNSNNVVRVIL 69 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCC---CCCCCcccEeeeeeccCCEEEEEe
Confidence 3455557899999999999999976 3343434333 3455542 355555555554444444444444
No 256
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=71.79 E-value=20 Score=22.87 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=47.2
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.+.|++.+....+-+-.++++.+|+..-.++ -.|.-++..++-..+-++.|+.+.+..|.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 3578888888888888899999998877666 55777788888888888888888776553
No 257
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=71.54 E-value=16 Score=24.20 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCe-EEE-ec-----CcccCCCcchhhc
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~~-----g~~L~d~~~l~~~ 135 (230)
-|.|...+|....+.|++..|++++-+.+..+.....+.- .|+ +. .+.++|...+-++
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 4667778999999999999999999999999998665543 333 22 2456676655443
No 258
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=71.01 E-value=19 Score=23.54 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=40.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccCCccccccccccCCeEEEEE
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+..+...+...+||.++=+. .|||...-.+. .||+..+-+ |-+.+++++.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 56788999999999998666 99998887666 588776654 5566778877654
No 259
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=70.75 E-value=29 Score=23.28 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCcEEeeccC-----ccCcHHHHHHHHhhHhCCCC-CCeEEEecC
Q 026933 85 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 123 (230)
Q Consensus 85 ~g~~~~~~v~-----~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g 123 (230)
+|....+.++ ++.+..+|+.+|++.+.+++ ....|.|..
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 4444455555 46899999999999999987 667777865
No 260
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=70.66 E-value=6.8 Score=26.55 Aligned_cols=36 Identities=36% Similarity=0.719 Sum_probs=24.9
Q ss_pred EEEECCeecCCCCccccc-CCCCCCEEEEEEEecCCC
Q 026933 194 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 194 ~L~~~g~~L~d~~~L~~~-~i~~g~~i~l~~~~~~g~ 229 (230)
.|-|.|+.|..+++|++| |-.+-..|.+-+..+|+|
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCC
Confidence 466899999999999999 333444555555556655
No 261
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=69.72 E-value=12 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=34.0
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceE-------------EEECCeecCCCCcc--cccCCCCCCEEEEEEEecCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQR-------------LIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~-------------L~~~g~~L~d~~~L--~~~~i~~g~~i~l~~~~~~g 228 (230)
+..+...||.+|-..+.+.+. ..+-. ++.+|. |-..+ .++-+++||.|.+.--..||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~---di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDT---DWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCc---cccccCCcccCCCCcCEEEEECCCCCC
Confidence 344456799999988888762 22222 223332 11223 35678999999887744444
No 262
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=69.34 E-value=30 Score=24.04 Aligned_cols=38 Identities=5% Similarity=0.198 Sum_probs=33.2
Q ss_pred EeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCccc
Q 026933 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
-...|++++|++.+-..+.+..+++++++-+.|-+...
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 45778999999999999999999999999988866554
No 263
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=69.31 E-value=6.1 Score=25.54 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=22.6
Q ss_pred HHhhHhCCCCCCeEEEe---cCcccCCCcchhhccccc
Q 026933 105 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 105 ~i~~~~~i~~~~q~L~~---~g~~L~d~~~l~~~~i~~ 139 (230)
.|+++..+.|....|.- .+.+|+-+++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 58889999999988884 457888899999999985
No 264
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=11 Score=34.82 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=63.0
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe----cCccc--CCCcchhhcccccCCceEEEEE--ee-cceeEEEe
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVLR--LR-GGMQIFVK 158 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~----~g~~L--~d~~~l~~~~i~~~~~i~l~~~--~~-~~~~i~v~ 158 (230)
.+.+.|+...+++.+|+.|++..+++.+..++.. +|..+ .++.+|.. ..++.+|.+-+- +. +...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 5678999999999999999999999999999873 23333 45677775 456666655442 11 22222222
Q ss_pred ee---c-Cc-----eEEEEeeccccHHHHHHHhchhc
Q 026933 159 TL---T-GK-----TITLEVESSDTIDNVKAKIQDKE 186 (230)
Q Consensus 159 ~~---~-~~-----~~~~~v~~~~tV~~LK~~i~~~~ 186 (230)
.. . .+ .+..-++.++|+++.|..+-.++
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L 992 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRML 992 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHH
Confidence 22 1 11 13344567889999887766553
No 265
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=68.29 E-value=24 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=30.0
Q ss_pred cCCcEEEEEec-----CCCcHHHHHHHhhhhhCCCC-CceeEEec
Q 026933 8 LTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 8 ~~g~~~~~~v~-----~~~tv~~lK~~i~~~~gip~-~~q~l~~~ 46 (230)
.+|...-+.++ ++.+..+|+++|.+.+++++ ..-.|.|.
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 46767677776 47999999999999999997 33444564
No 266
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=67.93 E-value=2.8 Score=27.06 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=21.9
Q ss_pred HhchhcCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 026933 181 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 181 ~i~~~~gi~~~~~~L~~---~g~~L~d~~~L~~~~i~~ 215 (230)
.|+++..+.|+...|+. .+.+|+-+++|.++||++
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47888889999988883 457899999999999974
No 267
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=67.28 E-value=5.7 Score=26.82 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=33.1
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCeEEE-------------ecCcccCCCcch--hhcccccCCceEEEEEeec
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------------FAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-------------~~g~~L~d~~~l--~~~~i~~~~~i~l~~~~~~ 151 (230)
++.+...||.++-+.+.+.+. ..+-+++ .||... ..+ .++-+++|+.|.++....|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcCEEEEECCCCC
Confidence 444466799999999988772 2223333 233221 112 3466888998877754443
No 268
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=67.19 E-value=20 Score=23.65 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=44.5
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+| +|+.+. +++..||.+|-.. .++++....+-.||..+. .....++-+++|+.|.++-...
T Consensus 19 m~I~V---NG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~Vg 82 (84)
T PRK06083 19 ITISI---NDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIA 82 (84)
T ss_pred EEEEE---CCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEec
Confidence 44544 566554 4567788887665 478888888889998774 3356667789999998875443
No 269
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=67.06 E-value=11 Score=25.19 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCcc
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~~ 49 (230)
.+.+++.|++++|=.|+|..|+..+|+++..-+ +.+.|+.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 367899999999999999999999999986644 4466653
No 270
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=66.82 E-value=17 Score=23.61 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=32.2
Q ss_pred ccHHHHHHHhchhcCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
.+.++|+.+.+..++++.+...|+ -.|.+.+|+.-+..+ +..+..+.+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEE
Confidence 489999999999999997777766 367777766433332 444444444
No 271
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=66.35 E-value=31 Score=21.97 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=42.9
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhcccccCCceEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
.+.|++++....+-+-.++++.+|+..-.++. .|--.+..++..+--++-|+.+.+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 46788888888888888999999998888775 577788899988888888888765
No 272
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=65.96 E-value=11 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCcc
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~~ 49 (230)
.+.+++.|++.+|=.|+|+.|+..+|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 578999999999999999999999999987654 3355544
No 273
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=65.11 E-value=23 Score=23.24 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=27.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
+...++.|++++|..++=..+.++++++..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 567889999999999999999999999753
No 274
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=64.56 E-value=26 Score=30.27 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhc--CCCCCceEEEECC----e--ecCCCCcccccCCCCCCEEEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAG----K--QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~--gi~~~~~~L~~~g----~--~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
+.+++..| ...+++.++++.+-|-.++-..+ +..|+++.++-+. . -+..++|+.+.|+..|..++|.+
T Consensus 3 ~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 44555554 46889999999998877776654 4677788887322 2 14567899999999999999977
No 275
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=64.51 E-value=23 Score=23.17 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred eEEEEeeccccHHHHHHHhchhcCC--CCCceEEE
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 196 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~~~L~ 196 (230)
..++.++.++|+.++-+++.+++++ .+..+.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 6789999999999999999999998 45677773
No 276
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.49 E-value=13 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+++.|++++|=.++|+.|+..+|+.+..-+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 368999999999999999999999999986544
No 277
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=64.02 E-value=28 Score=22.67 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=29.7
Q ss_pred CcHHHHHHHHhhHhCCCCCCeEEEe--cCcccCCCcchhh
Q 026933 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~~l~~ 134 (230)
.+..+|+.+.++.++++.+..+|.. .|...+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 4799999999999999987777774 6888887755544
No 278
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=63.26 E-value=36 Score=22.17 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=24.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
..++.|++.+|+.++=..+-.+++++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 788999999999999999999999943
No 279
>PRK01777 hypothetical protein; Validated
Probab=63.22 E-value=39 Score=22.86 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=41.9
Q ss_pred CEEEEEcc-C--CcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-------eeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~-~--g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-------q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|.|-.- . .....+++.++.||.|+=.+ .||+... -.+..+|+...- +.-+.+|+++.+.
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 45666542 2 23567999999999998776 5776652 244567766654 3456778888886
Q ss_pred EE
Q 026933 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
-.
T Consensus 75 rP 76 (95)
T PRK01777 75 RP 76 (95)
T ss_pred cC
Confidence 44
No 280
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=62.85 E-value=35 Score=23.16 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.8
Q ss_pred eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEE
Q 026933 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~ 120 (230)
|.|--.++....+.++.++||+++-..+.+++.++. ...+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 445456777788999999999999999999998766 444444
No 281
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.48 E-value=31 Score=22.44 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.8
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhCCC--CCCeEEE
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 120 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~q~L~ 120 (230)
+....+.|+.++|..++-..+.+++++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999976 5566665
No 282
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.23 E-value=8.5 Score=33.59 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=49.1
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.++.+...|-.++...|+++.||+-+..+.+-+|+.+.-.+|+.+-|++.+....+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 455566678899999999999999999999999999999999999999877765444
No 283
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=61.08 E-value=30 Score=24.08 Aligned_cols=38 Identities=5% Similarity=0.182 Sum_probs=32.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~ 49 (230)
.-...|++.+|++-+-..+....+++..+|.+.|-+..
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 34578999999999999999999999999998875433
No 284
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=61.00 E-value=42 Score=21.66 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=31.0
Q ss_pred cCcHHHHHHHHhhHhC-----CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 96 SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
..||++|++.+.+++. ......+...|+....+ +.-+++|+.|.++....|
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsG 80 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCC
Confidence 4799999999998863 11222333345533222 345788999877654443
No 285
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.80 E-value=16 Score=24.13 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+++.|++.+|=.++|+.|+..+|+++..-+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~Vn 53 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVN 53 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 468999999999999999999999999986644
No 286
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=60.25 E-value=17 Score=25.07 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=34.3
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCc-eEEEECCeecCCCCccccc
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~g~~L~d~~~L~~~ 211 (230)
.+-++.+.||+++...|.++..++++. ..|+.++.....+.++++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 445788999999999999999987765 5566777666777787664
No 287
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=60.12 E-value=24 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=32.8
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCC-eEEEecCcccCCCcchhhc
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~~l~~~ 135 (230)
+-|+.+.||+++...|..+..++++. .-|+.++.....+.++++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 34788999999999999999998775 3444667556777787664
No 288
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=60.06 E-value=14 Score=34.88 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=42.3
Q ss_pred CCcEEeeccCc-cCcHHHHHHHHhhHhCCCCCCeEEEec-CcccCCCcchhhcc
Q 026933 85 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYN 136 (230)
Q Consensus 85 ~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~~l~~~~ 136 (230)
.|+.+.++.+. ..|+++||.+|+.++|+....+.+.-+ |..+..++.+..|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 46677777775 458999999999999999999998865 56667788888876
No 289
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=59.12 E-value=46 Score=21.48 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=33.7
Q ss_pred EEeec-cccHHHHHHHhchhcC-----CCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 167 LEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~-~~tV~~LK~~i~~~~g-----i~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+++++ ..||.+|++.+.++.. ......+...+++.-. .+.-+++||.|-+.--..||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCCCCC
Confidence 34433 4799999999988862 1122333334553322 23458999999766544443
No 290
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.99 E-value=60 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=44.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+|+. +++..+.||.+|-.. .+++++.-.+.+||+.+. ...+.++-+.+++++.++--..
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEec
Confidence 5665 555678899988776 688888777778997774 4456677799999999986553
No 291
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=58.63 E-value=46 Score=21.57 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=26.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
+...++.|+.++|..++=..+..++++..
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~ 40 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD 40 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC
Confidence 56678999999999999999999999983
No 292
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=58.24 E-value=20 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=28.7
Q ss_pred ccHHHHHHHhchhcCCCCCceEEE--ECCeecCCCCcccc
Q 026933 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 210 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d~~~L~~ 210 (230)
.+.++|+.+.+..++++....+++ -.|.+.+|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 379999999999999986555554 58888877654433
No 293
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=57.94 E-value=14 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.1
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCeec
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 202 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~L 202 (230)
..+.+.|++..|-.++|+.++..+|+++...+-+ +.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 5689999999999999999999999999877655 666543
No 294
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=56.77 E-value=15 Score=25.67 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=40.3
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCc-eEEEECCeecCCCCcccccCC---CCCCEEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~g~~L~d~~~L~~~~i---~~g~~i~l~~~ 224 (230)
-.+-|+.+.||+++...|.++..+.++. ..|+.++.....+.++++..= .++.-+++...
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 3456899999999999999999988876 445455544456666755421 13445555543
No 295
>PRK08453 fliD flagellar capping protein; Validated
Probab=55.13 E-value=48 Score=30.95 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=49.1
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhC--CC--------CCceeEEecCccccCCc------cccccccccCCeEEEEE
Q 026933 8 LTGKTITLEVESSDTIDNVKAKIQDKEG--IP--------PDQQRLIFAGKQLEDGR------TLADYNIQKESTLHLVL 71 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g--ip--------~~~q~l~~~g~~l~d~~------~l~~~~i~~~~~i~l~~ 71 (230)
.+|++++++|+.+.|+.+|+..|-+..+ |. ..-.+|++.+...-.+. +|++..+..+.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4699999999999999999999995331 11 01234444443333222 33333333322111111
Q ss_pred EecCCeeeEEEccCCcEEeecc
Q 026933 72 RLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 72 ~~~~~~~v~v~~~~g~~~~~~v 93 (230)
.-.+.+.|.++..+|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2245578888888887765543
No 296
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=55.11 E-value=17 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=31.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecC
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g 47 (230)
.+.+++.|++++|=.++|..|+..+|+-+..-.-+ ..|
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 46889999999999999999999999988765433 444
No 297
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=54.75 E-value=23 Score=23.11 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=37.6
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCe-----ecCCCCccccc
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADY 211 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~-----~L~d~~~L~~~ 211 (230)
.|.+..+.++..-|-+.|+++++..+.+|+...-+.|-.. .|.++..|.++
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 5667777788888999999999999999998777767442 23444455444
No 298
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.64 E-value=8.6 Score=33.56 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=47.7
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
++.+-+-|-.+|...|.+++|++....+.+.+|+.+.-.+||.+-|++.+....+..
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 344445678899999999999999999999999999999999999998876655433
No 299
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=53.91 E-value=56 Score=20.91 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=46.1
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~ 226 (230)
+.|....-.-.+-+-.++++.+|+....++ -.|.-.+..++-..+-++.|+.+.+.-|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 455555556566667778889998887777 566677899999999999999999886643
No 300
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=53.52 E-value=32 Score=23.11 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=34.0
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCcc
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~ 125 (230)
...+.+.|+...|=.++|+.++..+++++...+-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 46789999999999999999999999999887544 66654
No 301
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=52.91 E-value=58 Score=21.30 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCC--CCeEEE
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 120 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~ 120 (230)
++....+.+..++|..++-..+.++++++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 366788999999999999999999999864 455665
No 302
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=52.68 E-value=33 Score=23.97 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.9
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCcccCCCcchhhc
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~l~~~ 135 (230)
+-|+.+.||+++...|..+..++++.--.+ .++.....+.++++.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 458999999999999999999888764444 455444556666553
No 303
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=52.53 E-value=52 Score=28.50 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=51.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEec----Ccc--cCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~----g~~--L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
|.+.++...|. ..+++.++++.+-|-.++-.... ..++.+.+.-+ |.. +..++|+.+.|+..|..+++..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34566766664 57899999999988888777653 56777777643 221 3457799999999999998876
No 304
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.34 E-value=24 Score=22.89 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.5
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
..+.+.|++..|-.++|+.|+..+++.+...+-+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999988877654
No 305
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=52.00 E-value=33 Score=22.62 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=38.4
Q ss_pred EEecCCCcHHHHHHHhhhhhCCC-------CCceeEEecCc-ccc----C--CccccccccccCCeEEEE
Q 026933 15 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QLE----D--GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip-------~~~q~l~~~g~-~l~----d--~~~l~~~~i~~~~~i~l~ 70 (230)
+++++++|+.++-..+.....+. -+...|++.+. .|+ . +++|.+. +.+|..+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 68999999999999998884333 34455666553 222 2 5888888 8888877764
No 306
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=51.61 E-value=50 Score=28.80 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=61.1
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCC---CcchhhcccccCCceEEEEE
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l~~~ 148 (230)
.+..++.|+.++|..+.=.++.++-...++..+....++....+.|- |..++..+ +++|.+..+.+...+.|+.+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 35567888889999999899999999999999998888888777775 66777643 67899999998887755544
Q ss_pred ee
Q 026933 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
..
T Consensus 392 ~r 393 (506)
T KOG2507|consen 392 KR 393 (506)
T ss_pred CC
Confidence 33
No 307
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=51.55 E-value=20 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHhhhhh-CCC
Q 026933 13 ITLEVESSDTIDNVKAKIQDKE-GIP 37 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~-gip 37 (230)
.+++++.++|+.++|+.+-+.. ..|
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGST
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCC
Confidence 5789999999999999766553 344
No 308
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=51.55 E-value=37 Score=21.85 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=21.8
Q ss_pred EEEEe-cCCCcHHHHHHHhhhhhCC--CCCceeEEecC
Q 026933 13 ITLEV-ESSDTIDNVKAKIQDKEGI--PPDQQRLIFAG 47 (230)
Q Consensus 13 ~~~~v-~~~~tv~~lK~~i~~~~gi--p~~~q~l~~~g 47 (230)
.++.+ +++.+|.|||++|-...++ ..+.+..+++.
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 34555 3467999999999666554 44444444553
No 309
>CHL00030 rpl23 ribosomal protein L23
Probab=50.41 E-value=27 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=32.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecC
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g 47 (230)
..+.+++.|++++|=.++|+.|+..+|+.+..-.-. ..|
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 457899999999999999999999999988664433 444
No 310
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=50.05 E-value=29 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=28.1
Q ss_pred ccHHHHHHHhchhcCCCCCceEEE--ECCeecCCCCcccc
Q 026933 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 210 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d~~~L~~ 210 (230)
.+.++|+.+.+++++++....+++ -.|.+.+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 379999999999999965555444 67888877654433
No 311
>KOG4261 consensus Talin [Cytoskeleton]
Probab=49.50 E-value=50 Score=31.15 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=75.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC---CCceeEEec------CccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip---~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
+-..++...|+.+|.|-=.-|.+++... +..-.|+.. |--|+...+|..|=+..++++...-+ .-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccce
Confidence 5577899999999998766666554321 344444432 34578889999998888888765432 23467
Q ss_pred EEccCCcEEeeccCccCcHHHHHHHHhhHhCCC
Q 026933 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
++.++|..-++.++.+.+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 788899888999999999999999999988874
No 312
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=49.45 E-value=85 Score=21.65 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=43.2
Q ss_pred eeeEEEccC-CcEEeeccCccCcHHHHHHHHhhHh----C--CCCC-CeEEEecCcc--cCCCcchhhcc-----cccCC
Q 026933 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKES 141 (230)
Q Consensus 77 ~~v~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~----~--i~~~-~q~L~~~g~~--L~d~~~l~~~~-----i~~~~ 141 (230)
+.|.+...+ ...+.+.+++++|+.++.+.+-.+. + -+++ +..|--.|+. |..+.+|.+|. +..|.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 334444333 4568999999999999887766651 1 2233 5566555532 44445555443 56677
Q ss_pred ceEEEEE
Q 026933 142 TLHLVLR 148 (230)
Q Consensus 142 ~i~l~~~ 148 (230)
.+++++.
T Consensus 98 ~~~L~L~ 104 (108)
T smart00144 98 EPHLVLM 104 (108)
T ss_pred CceEEEE
Confidence 7777654
No 313
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=49.36 E-value=85 Score=21.64 Aligned_cols=65 Identities=28% Similarity=0.298 Sum_probs=44.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhc----C--CCCC-ceEEEECCe--ecCCCCcccccC-----CCCCCEEEEEEEec
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKESTLHLVLRLR 226 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~----g--i~~~-~~~L~~~g~--~L~d~~~L~~~~-----i~~g~~i~l~~~~~ 226 (230)
...+++.+++++|+.++.+.+..+. + -+++ .+.|--.|+ -|..+.+|.+|. ++.|..++|.+...
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMTL 106 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEec
Confidence 4568999999999999977766651 1 2333 577766663 355667777763 57888888877643
No 314
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=48.90 E-value=21 Score=24.26 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=39.6
Q ss_pred EEEeecceeEEEeeecCceEEEEee---ccccHHHHHHHhchhcC------------CCCCceEEEECC--eecCCCCcc
Q 026933 146 VLRLRGGMQIFVKTLTGKTITLEVE---SSDTIDNVKAKIQDKEG------------IPPDQQRLIFAG--KQLEDGRTL 208 (230)
Q Consensus 146 ~~~~~~~~~i~v~~~~~~~~~~~v~---~~~tV~~LK~~i~~~~g------------i~~~~~~L~~~g--~~L~d~~~L 208 (230)
.+...||..+.+. ..+.+.++++ ...|+.+|-..+++..- +.|.-..|+ ++ ++|...
T Consensus 3 ~vEF~GGlE~Lf~--~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLI-Nd~DwEl~g~--- 76 (96)
T PF09138_consen 3 TVEFSGGLELLFG--NQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLI-NDADWELLGE--- 76 (96)
T ss_dssp EEEEETTCGGGTT--T-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEE-TTCEHHHHTC---
T ss_pred EEEEcCcHHHHhC--CceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEE-cCccceeecC---
Confidence 3445555544333 2345666666 57799999888877541 233333332 22 233222
Q ss_pred cccCCCCCCEEEEEEEecCC
Q 026933 209 ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 209 ~~~~i~~g~~i~l~~~~~~g 228 (230)
.+|-+++||+|.+.-.+-||
T Consensus 77 ~~y~l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 77 EDYVLKDGDNITFISTLHGG 96 (96)
T ss_dssp CCSB--TTEEEEEEETTT--
T ss_pred cceEcCCCCEEEEEccCCCC
Confidence 36889999999887766655
No 315
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.38 E-value=82 Score=21.18 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=46.0
Q ss_pred EEEEEeecceeEEEeeecCceEEEEee-ccccHHHHHHHhchhcCCCCCceEEEECCee------c-CC--CCcc--ccc
Q 026933 144 HLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ------L-ED--GRTL--ADY 211 (230)
Q Consensus 144 ~l~~~~~~~~~i~v~~~~~~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~------L-~d--~~~L--~~~ 211 (230)
.+-++..+|..+......-....+++. ...||.+|-.-+..++--.++ +.++.+|.+ | +| -..| .+|
T Consensus 6 ~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~-~lFi~~gsvrpGii~lINd~DWEllekedy 84 (101)
T KOG4146|consen 6 EVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRD-SLFIHHGSVRPGIIVLINDMDWELLEKEDY 84 (101)
T ss_pred eEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCc-ceEeeCCcCcCcEEEEEeccchhhhccccc
Confidence 344555666655444333223344432 457899887777775422222 233344421 1 11 1122 478
Q ss_pred CCCCCCEEEEEEEecCC
Q 026933 212 NIQKESTLHLVLRLRGG 228 (230)
Q Consensus 212 ~i~~g~~i~l~~~~~~g 228 (230)
.+++|+.|.+...+-||
T Consensus 85 ~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 85 PLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccCCEEEEEEeccCC
Confidence 99999999888777665
No 316
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=48.30 E-value=49 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=30.1
Q ss_pred CcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCCCcchhh
Q 026933 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~~l~~ 134 (230)
.+..+|+.+.++.++++.+..+|. -.|.+.+|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 379999999999999996666665 47888888766554
No 317
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=47.87 E-value=30 Score=22.73 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=33.4
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCC-CCCceEEE--ECC--eecCCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAG--KQLEDG 205 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi-~~~~~~L~--~~g--~~L~d~ 205 (230)
..-++.|.|+.|.+++-..++.++.+ .|+.+.|+ .+| ..|.|+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 34689999999999999999999987 57777665 444 356554
No 318
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=47.84 E-value=59 Score=21.43 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=32.5
Q ss_pred EEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026933 4 FVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 4 ~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
+|| ..+|..+-+.+++..|..+|.+++.+.+..+. .|-+.
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~-~q~ft 42 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN-DQPFT 42 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC-CCcEE
Confidence 344 35799999999999999999999999999977 34333
No 319
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.48 E-value=31 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=30.7
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
..+.+.|++..+-.++|+.|+..+|+.+...+-+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999998877654
No 320
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=47.26 E-value=72 Score=20.87 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=35.9
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc-----ccCCCcchhhc
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----~L~d~~~l~~~ 135 (230)
.+|..-.+.++..-|-+.|+++|+..+.+|+...-+.|-.. .|.++.-|.++
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34544455566666899999999999999998788877432 24444455544
No 321
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=47.19 E-value=89 Score=21.26 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=41.3
Q ss_pred eeeEEEcc-CCcEEeeccCccCcHHHHHHHHhhHh--CCCC----CCeEEEecCcc--cCCCcchhhcc-----cccCCc
Q 026933 77 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPP----DQQRLIFAGKQ--LEDGRTLADYN-----IQKEST 142 (230)
Q Consensus 77 ~~v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~~----~~q~L~~~g~~--L~d~~~l~~~~-----i~~~~~ 142 (230)
+.|.|... .+..+.+.++.+.|+.++-..+-.+. +..+ ++..|--.|+. |..+.+|.+|. +..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34455544 56778999999999999987776662 2222 15666666633 55667777774 455555
Q ss_pred eEEEE
Q 026933 143 LHLVL 147 (230)
Q Consensus 143 i~l~~ 147 (230)
+++.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55544
No 322
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=47.05 E-value=83 Score=20.83 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=39.7
Q ss_pred eeccCccCcHHHHHHHHhhHh-C--CCC---CCeEEEecC--cccCCCcchhhcccccCCceEEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i~~---~~q~L~~~g--~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
-+.|+..+|+.++=++++... | +++ ...++.++| +.+..+.++++.||.+-+.|.+..
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 467888999999998888764 3 332 245666888 888999999999999988877654
No 323
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=46.86 E-value=58 Score=21.18 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=29.7
Q ss_pred CcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCCCcchhh
Q 026933 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~~l~~ 134 (230)
.+..+|+.+.++++++|....++. -.|.+.+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 379999999999999976666655 47888888765554
No 324
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.73 E-value=64 Score=20.99 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=32.6
Q ss_pred CcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCCCcchhhcccccCCce
Q 026933 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTL 143 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i 143 (230)
.+..+|+.+.++.++++....+|. -.|..++++.-+.. +.+++.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~l 67 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHF 67 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEE
Confidence 379999999999999986655554 57888887765554 3444444
No 325
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=45.68 E-value=9.4 Score=32.35 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.7
Q ss_pred ccCCcEEeeccC-ccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcch
Q 026933 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 83 ~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l 132 (230)
..+|....+.+. .+..+..+|.++....++++..|.+.+.|.-+.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456777777777 67789999999999999999999999999999887443
No 326
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.49 E-value=72 Score=22.05 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.0
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCC
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~ 190 (230)
+++-..+|++..++|....+-.+++.++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 345566899999999999999999999999999876
No 327
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=44.08 E-value=34 Score=23.16 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=41.6
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCee---------cCCCCcccccCCCCCCEEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ---------LEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~---------L~d~~~L~~~~i~~g~~i~l 221 (230)
...+.+.|++.+|-.++|+.+++.+|+.+.....+ ..|.. +..+..-...-+..|+.|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46799999999999999999999999988776554 44421 23333344444556665543
No 328
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=43.50 E-value=96 Score=20.54 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=41.4
Q ss_pred EEEEeeccccHHHHHHHhchhc-C--CCC--C-ceEEEECC--eecCCCCcccccCCCCCCEEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-g--i~~--~-~~~L~~~g--~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
.-+.|+..+|+.++=++++-.. | +++ . ..++.++| ..+..+.++.+.||.+=+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4577888999999988887764 4 332 3 34555788 8899999999999999999988764
No 329
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=43.40 E-value=42 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=30.3
Q ss_pred ccHHHHHHHhchhcCCCCC----ceEEEECCeecCCCCcccccCCCCCCEE
Q 026933 173 DTIDNVKAKIQDKEGIPPD----QQRLIFAGKQLEDGRTLADYNIQKESTL 219 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~~----~~~L~~~g~~L~d~~~L~~~~i~~g~~i 219 (230)
.+.++|+.+.++.++++.+ ...|.-.|.+.+|+.-+... .++..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~l 69 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL--PPNTKF 69 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC--CCCcEE
Confidence 3799999999999999833 33444678888776544333 344444
No 330
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.08 E-value=51 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.3
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCc
Q 026933 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~ 48 (230)
.|+...+|.||-++|.+.+.|++++-.+. +|..
T Consensus 68 ~Ie~fsnv~ELY~kIAe~F~Is~~dIlfcTlNsh 101 (334)
T KOG3938|consen 68 RIEGFSNVRELYQKIAEAFDISPDDILFCTLNSH 101 (334)
T ss_pred eecccccHHHHHHHHHHHhcCCccceEEEecCCC
Confidence 45666789999999999999999876655 4543
No 331
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=41.55 E-value=1e+02 Score=20.38 Aligned_cols=45 Identities=2% Similarity=0.220 Sum_probs=31.3
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc--cCCCcchhh
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLAD 134 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~--L~d~~~l~~ 134 (230)
.+-|+.+.|++++...|.++.++++++--..|=+.. ...+.++.+
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~ 65 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGN 65 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHH
Confidence 455899999999999999999988776444443433 234455544
No 332
>CHL00030 rpl23 ribosomal protein L23
Probab=41.33 E-value=38 Score=22.85 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=30.5
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
...+.+.|+...|-.++|+.|+..+++.+....-+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 35799999999999999999999999888776554
No 333
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=41.26 E-value=42 Score=25.06 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=32.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCc
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~ 48 (230)
..+.+++.|++++|=.++|..|+..+|+.+..-.-. ..|+
T Consensus 21 e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 21 SKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 357899999999999999999999999998665443 4443
No 334
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=46 Score=28.16 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHh-CCCCCCeEEEecC---cccC--CCcchhhcccccCCc
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 142 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~~g---~~L~--d~~~l~~~~i~~~~~ 142 (230)
.|.|+..+|++....+-.+++|..|-.-+.... |-+-...+|+.+- +.|. .+.|++++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488999999998888888888888877666554 5677788888654 4453 477999999998764
No 335
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.15 E-value=1.9e+02 Score=23.01 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=71.3
Q ss_pred EEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC--CeE-E--EecCcc----------cCCCcch
Q 026933 68 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQR-L--IFAGKQ----------LEDGRTL 132 (230)
Q Consensus 68 ~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~--~q~-L--~~~g~~----------L~d~~~l 132 (230)
.+.+.......++|-..=.+.-.+.+....|+.++ |+..-|+.+. ... + ..+|+. +.....-
T Consensus 70 ~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~a---i~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~~l~~~g~~~ 146 (239)
T TIGR03028 70 TINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDV---LALAGGVTPDGADVITLVREREGKIFRKQIDFPALFNPGGDN 146 (239)
T ss_pred EEEEEeccceEEEEEEEecCCceEEcCCCCcHHHH---HHHcCCCCccCCCeEEEEEecCCeEEEEEEEHHHHHhcCCCc
Confidence 33333334456666544334444556666787664 4444444432 212 2 234433 2222334
Q ss_pred hhcccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCC----CCCceEEEE---CCeecCCC
Q 026933 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIF---AGKQLEDG 205 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi----~~~~~~L~~---~g~~L~d~ 205 (230)
.++-+++|+.|++.... .+++.-.-++.-.+.+.+..|+.++ |...-|+ .+....++. +|....-.
T Consensus 147 ~ni~L~~GD~I~V~~~~----~v~v~G~V~~pg~~~~~~~~tl~~a---l~~aGG~~~~a~~~~v~i~R~~~~g~~~~~~ 219 (239)
T TIGR03028 147 ENILVAGGDIIYVDRAP----VFYIYGEVQRPGAYRLERNMTVMQA---LAQGGGLTPRGTERGIRVMRRDDKGAVEEVS 219 (239)
T ss_pred CCcEEcCCCEEEEcCCc----cEEEEeEccCCeEEEeCCCCCHHHH---HHhcCCCCcccCcceEEEEEECCCCcEEEEe
Confidence 46778999998775321 2444433344455666677777554 4444343 233445542 23211111
Q ss_pred CcccccCCCCCCEEEEE
Q 026933 206 RTLADYNIQKESTLHLV 222 (230)
Q Consensus 206 ~~L~~~~i~~g~~i~l~ 222 (230)
..+.+ .+++||.|++-
T Consensus 220 ~~~~~-~l~~gDii~V~ 235 (239)
T TIGR03028 220 GELGD-LVQPDDVIYVR 235 (239)
T ss_pred cCCCc-ccCCCCEEEEe
Confidence 11222 38999999874
No 336
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=39.96 E-value=39 Score=22.17 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=33.6
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCC---CceeEE-ecCccccC
Q 026933 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLED 52 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~---~~q~l~-~~g~~l~d 52 (230)
.+|+...+.|+.++++--+-++...+.|.|+ ..+++. ++|..+.-
T Consensus 7 Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~~ 55 (91)
T cd05484 7 VNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLSV 55 (91)
T ss_pred ECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEeeE
Confidence 4699999999999999999999988888663 334444 55654433
No 337
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=39.85 E-value=35 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHhhhhh
Q 026933 13 ITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
..++++.++|+.++|..+-+..
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4688999999999999976664
No 338
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=39.55 E-value=1.5e+02 Score=23.87 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=35.1
Q ss_pred ccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCC--CcchhhcccccCCceEEE
Q 026933 95 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~~l~~~~i~~~~~i~l~ 146 (230)
-+.|+..|...+.+-+..-+..|.|.|.|-.... +-++.. ++.|+.+.+.
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltq--L~vGDgLRl~ 190 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQ--LRVGDGLRLY 190 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeE--eecCCcEEEE
Confidence 4568999999999999988999999998855432 233433 3455555443
No 339
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=38.56 E-value=17 Score=30.76 Aligned_cols=50 Identities=36% Similarity=0.579 Sum_probs=41.9
Q ss_pred ecCceEEEEee-ccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCccc
Q 026933 160 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209 (230)
Q Consensus 160 ~~~~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~ 209 (230)
.+|+...+.+. ....+..+|.++....++++..|.+.+.|..+.|+.++.
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 45677777776 677899999999999999999999999999998875543
No 340
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=38.31 E-value=63 Score=20.78 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 175 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 175 V~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
-++.+ ++-+++++.+++... .+..+--..+||.++|+.|.+..+....|
T Consensus 17 ~eE~~-~lL~~y~i~~~qLP~-----I~~~DPv~r~~g~k~GdVvkI~R~S~taG 65 (74)
T PF01191_consen 17 EEEKK-ELLKKYNIKPEQLPK-----ILSSDPVARYLGAKPGDVVKIIRKSETAG 65 (74)
T ss_dssp HHHHH-HHHHHTT--TTCSSE-----EETTSHHHHHTT--TTSEEEEEEEETTTS
T ss_pred HHHHH-HHHHHhCCChhhCCc-----ccccChhhhhcCCCCCCEEEEEecCCCCC
Confidence 33433 444556777766444 34445566788999999999988755443
No 341
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=37.72 E-value=1.3e+02 Score=20.45 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=41.5
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-c-eeEEecC---ccccC--------CccccccccccCCeEEEE
Q 026933 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-Q-QRLIFAG---KQLED--------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-~-q~l~~~g---~~l~d--------~~~l~~~~i~~~~~i~l~ 70 (230)
-.+|...++..+.++||.|+-..+..++.++.. . |..+..| +.|.. ...|...|-.+.+.++..
T Consensus 9 r~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~l 85 (97)
T cd01775 9 RSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIEDI 85 (97)
T ss_pred ecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHHh
Confidence 345666789999999999999999999998873 2 3333333 34433 233445555555555444
No 342
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=37.53 E-value=33 Score=24.23 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=24.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|+|.| +.+|..+..++..+.|..+|.+++
T Consensus 1 mkI~i-~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKI-TIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEE-EETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEE-EECCEEEEEEECCCHHHHHHHHhC
Confidence 78888 455999999999999999988774
No 343
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=37.44 E-value=64 Score=21.05 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred ccHHHHHHHhchhcCCCC-CceEEEECCeecCCCCccc
Q 026933 173 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLA 209 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~-~~~~L~~~g~~L~d~~~L~ 209 (230)
.+.++|+.+.++.++++. ....|.-.|.+.+|+.-+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~ 58 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQ 58 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHh
Confidence 379999999999999853 2344556788887765443
No 344
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.91 E-value=71 Score=19.30 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=33.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccc
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l 56 (230)
|+|.+.+|+... +..+.|+.|+=..|....+-..- .-..+|+..+-+..|
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl~~~L 50 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDLDHPL 50 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEETTSBB
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCCCCCc
Confidence 466678888776 88899999999999877653221 122677555544444
No 345
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=35.70 E-value=85 Score=19.48 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=23.0
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEeeecCceEE
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 166 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~ 166 (230)
..|.+.|+.+|+.+.+.-+...+-.+.+... ++.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~~-~~~i~ 61 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKVD-GSRIA 61 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEET-TEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEEC-CEEEE
Confidence 4689999999999998866544444444442 44443
No 346
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=35.32 E-value=1.2e+02 Score=21.17 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
|+.+...-+++ +-.+.|+..+|..++-+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67788777776 45699999999999999999998854
No 347
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=35.12 E-value=71 Score=23.92 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred ccccccccccCCeEEEEEEecCCeeeEEEccCCcEEee--ccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcc
Q 026933 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~ 131 (230)
...+.+.+.....+.-++....-+-|.|...+|+.-.+ -+..-..-.|+...+++....--.....- ....-.+..+
T Consensus 64 eLFA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~~-~~~~~~~~~p 142 (160)
T PF07933_consen 64 ELFAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEAE-EQSQAAESQP 142 (160)
T ss_dssp SS-EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------
T ss_pred ceEEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhhh-hhhcccCCCC
Confidence 45667777776666666666777888888888876444 45555567889999998876421111110 0111234556
Q ss_pred hhhcccccCCceEEEE
Q 026933 132 LADYNIQKESTLHLVL 147 (230)
Q Consensus 132 l~~~~i~~~~~i~l~~ 147 (230)
=.||.+++|.+|++.+
T Consensus 143 ~~D~sLKeGetI~ini 158 (160)
T PF07933_consen 143 KKDYSLKEGETIKINI 158 (160)
T ss_dssp ----------------
T ss_pred ccCCcCCCCCEEEEec
Confidence 7889999999998754
No 348
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.94 E-value=1.5e+02 Score=20.18 Aligned_cols=70 Identities=24% Similarity=0.401 Sum_probs=42.7
Q ss_pred EEEeee-cCceEEEEeeccccHHHHHHHhchhc--CCCC----CceEEEECCe--ecCCCCcccccC-----CCCCCEEE
Q 026933 155 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPP----DQQRLIFAGK--QLEDGRTLADYN-----IQKESTLH 220 (230)
Q Consensus 155 i~v~~~-~~~~~~~~v~~~~tV~~LK~~i~~~~--gi~~----~~~~L~~~g~--~L~d~~~L~~~~-----i~~g~~i~ 220 (230)
+.+... ....+++.++.+.|+.+|-+.+..+. +..+ +++.|--.|. -|..+.+|.+|. ++.+-.+.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~~ 98 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDPH 98 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--EE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCcE
Confidence 444444 45679999999999999977776662 2222 2677776663 456778888873 46677777
Q ss_pred EEEE
Q 026933 221 LVLR 224 (230)
Q Consensus 221 l~~~ 224 (230)
|.+.
T Consensus 99 L~Lv 102 (106)
T PF00794_consen 99 LVLV 102 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 349
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=34.49 E-value=87 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.4
Q ss_pred CEEEEEccCCc---EEEEEecCCCcHHHHHHHhhhhh
Q 026933 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
|+||-|..++. .-++.+..++||.|+=.+|....
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 57777777653 34688899999999999988644
No 350
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=34.27 E-value=1.6e+02 Score=20.36 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
|+|=..+|.+..+.|..--+=.++++++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677899999999999999999999999999998
No 351
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=34.05 E-value=1e+02 Score=25.95 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=48.2
Q ss_pred eEEEEeeccccHHHHHHHhchhc--------------C-CCCCceEEEECCeecCCCCcccccC---CCCCCEEEEEEEe
Q 026933 164 TITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRL 225 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~--------------g-i~~~~~~L~~~g~~L~d~~~L~~~~---i~~g~~i~l~~~~ 225 (230)
...+......-|..+..-|.+++ . .|.+..-|+.+|.+|+.+.||+... =+.+..|.|.+|.
T Consensus 249 ~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 249 NSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred cceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 34566666778888888888877 2 3455678889999999999887664 3788888898886
Q ss_pred cC
Q 026933 226 RG 227 (230)
Q Consensus 226 ~~ 227 (230)
.+
T Consensus 329 k~ 330 (331)
T PF11816_consen 329 KG 330 (331)
T ss_pred cC
Confidence 54
No 352
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=33.20 E-value=1.9e+02 Score=21.10 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=52.6
Q ss_pred cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcc------------hhhcccccCCceEEEEEeecceeEEEeee
Q 026933 93 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTL 160 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~------------l~~~~i~~~~~i~l~~~~~~~~~i~v~~~ 160 (230)
.-|+..|..|-.+.+-.-.+..+.-.+..+|+.|+++.. |..|.+.+|+.=...-...+|.++.+...
T Consensus 21 ~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tK 100 (149)
T PF10787_consen 21 SLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTK 100 (149)
T ss_pred cCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEec
Confidence 335566777777766666677778889999999977543 45667777775333334456677888877
Q ss_pred cCce-EEEEeec
Q 026933 161 TGKT-ITLEVES 171 (230)
Q Consensus 161 ~~~~-~~~~v~~ 171 (230)
.|+. +.+.+-+
T Consensus 101 kGK~dv~f~vYs 112 (149)
T PF10787_consen 101 KGKKDVTFFVYS 112 (149)
T ss_pred cCcceeEEEEEe
Confidence 7654 5666554
No 353
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.81 E-value=79 Score=20.71 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=31.0
Q ss_pred ccHHHHHHHhchhcCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933 173 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~-~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
.+..+|+.+.++.++++. ....|.-.|.+.+++.-+.. +.++..+.+
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~ 68 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMV 68 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh--CCCCCEEEE
Confidence 379999999999999863 33444467788877654433 345555543
No 354
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.46 E-value=73 Score=23.43 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+++.+.|++.++=.++|+.|+..+++.+..-.
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVN 114 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVN 114 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEE
Confidence 478999999999999999999999999876543
No 355
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=31.01 E-value=65 Score=19.56 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.7
Q ss_pred CEEEEEccCCcEEEEEe---cCCCcHHHH
Q 026933 1 MQIFVKTLTGKTITLEV---ESSDTIDNV 26 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v---~~~~tv~~l 26 (230)
|.|++.+.+|..|.++. ..+.|+.++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~m 29 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNM 29 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHH
Confidence 78999999999999984 444555443
No 356
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=30.60 E-value=56 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 198 ~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~ 227 (230)
+.+-.+|+++|...+++-|+-|.+.+.+..
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecCcc
Confidence 345568999999999999999999887543
No 357
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=30.27 E-value=1.5e+02 Score=19.01 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=34.1
Q ss_pred EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEE
Q 026933 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~ 197 (230)
.+..++.+.-.+++.+..|+.+--.+.-+.-|+.|+-+..+.
T Consensus 3 r~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~ 44 (74)
T cd01816 3 RVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFR 44 (74)
T ss_pred eEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEE
Confidence 455667777889999999999998888888899988766653
No 358
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=29.40 E-value=47 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.2
Q ss_pred cccCCCcchhhcccccCCceEEEEEee
Q 026933 124 KQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 124 ~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
+..+|+++|+.++++-|+.+.+.+.++
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 456889999999999999999988654
No 359
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=29.14 E-value=61 Score=21.14 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=30.3
Q ss_pred cHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 174 tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
|-++.+ .+-+++++.+++... .+.++--..+||.++|+.|.+..+.
T Consensus 19 s~eE~~-~lL~~y~i~~~qLP~-----I~~~DPv~r~~g~k~GdVvkI~R~S 64 (79)
T PRK09570 19 SEEEAK-KLLKEYGIKPEQLPK-----IKASDPVVKAIGAKPGDVIKIVRKS 64 (79)
T ss_pred CHHHHH-HHHHHcCCCHHHCCc-----eeccChhhhhcCCCCCCEEEEEECC
Confidence 334444 455556676665443 3445556778899999999998773
No 360
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.03 E-value=36 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.3
Q ss_pred CCccccccccccCCeEEEE
Q 026933 52 DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 52 d~~~l~~~~i~~~~~i~l~ 70 (230)
+.++|..|||..+..|.+.
T Consensus 93 ~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 93 EDKTLKAAGIENETEISFF 111 (127)
T ss_pred ccchHHHhccCcchhhhhh
Confidence 3577888888877766554
No 361
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=28.25 E-value=1.7e+02 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.2
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026933 18 ESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
..+.++.+|+..++..++++..+-..+
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 456899999999999999987665553
No 362
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=27.90 E-value=1.3e+02 Score=21.13 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+.|++...+|+..++++.++.|+.+.=..
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHE 29 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 46777778899999999999999887554
No 363
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=27.86 E-value=68 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.5
Q ss_pred CCcccccCCCCCCEEEEEEEecCCC
Q 026933 205 GRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 205 ~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.|.++|+.+|+.|.+..+.--|+
T Consensus 23 ~~rL~~mGl~pG~~V~v~~~aP~gd 47 (74)
T PRK09555 23 RQKLLSLGMLPGSSFNVVRVAPLGD 47 (74)
T ss_pred HHHHHHcCCCCCCEEEEEEECCCCC
Confidence 3678899999999999887755444
No 364
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=27.46 E-value=78 Score=20.65 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
+.+..-+|.+|.++|+-+.-+..-|+.|+..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4455668999999999888777777666653
No 365
>PRK03641 hypothetical protein; Provisional
Probab=27.39 E-value=3.1e+02 Score=21.61 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=60.0
Q ss_pred hCCCCCceeEEecCccccCC--ccccccccccCCeEEEEEEe---------------cCCeeeEEEccCCcEEeeccCcc
Q 026933 34 EGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRL---------------RGGMQIFVKTLTGKTITLEVESS 96 (230)
Q Consensus 34 ~gip~~~q~l~~~g~~l~d~--~~l~~~~i~~~~~i~l~~~~---------------~~~~~v~v~~~~g~~~~~~v~~~ 96 (230)
..+|.+-..|..+|+.+... +.-.++.+.+|..- ++++. .+.+-+.+...++..+.+.++.-
T Consensus 23 L~~p~~i~lL~vnG~kv~~sll~~~~~l~L~~G~nQ-iv~ry~~~~~~~~~~~~~~~S~p~I~~F~a~~~~~~~~~lp~~ 101 (220)
T PRK03641 23 LKLSPDIDLLVLDGKKVSGSLLRGADSLELDNGPHQ-LVFRVEKTIRLPTGEERLYISPPLIVSFNTQLISQVNFRLPRL 101 (220)
T ss_pred EeCCCceeEEEECCEEccccccCCCceEEeCCCceE-EEEEEeeeEEcCCCceeEEecCCEEEEEEcCCCceEEEEcCCC
Confidence 45777778888999887643 12345677777652 22222 12344444444456778888766
Q ss_pred CcHHHHHHHHhh-------HhC--CCCCCeEEEecCcc-cCC-CcchhhcccccC
Q 026933 97 DTIDNVKAKIQD-------KEG--IPPDQQRLIFAGKQ-LED-GRTLADYNIQKE 140 (230)
Q Consensus 97 ~tV~~lK~~i~~-------~~~--i~~~~q~L~~~g~~-L~d-~~~l~~~~i~~~ 140 (230)
.+..+-|+-... ..| |+...-.|...|-. ..| ..-+.+|+...+
T Consensus 102 ~~~~~a~~F~~~P~~~L~d~~g~~I~~~~d~L~~~G~~~~~d~e~~~~~YN~~~~ 156 (220)
T PRK03641 102 ENEREANHFSAAPRYQLLDGDATPIPVKLDILAITSTAKSIDYEVEMERYNKSAK 156 (220)
T ss_pred CCHHHHHHHHhCCcEEEEeCCCCEecceeeeeccCCCchhhhHHHHHHHhcccCC
Confidence 667777665443 122 33333345555522 233 456888988776
No 366
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.32 E-value=67 Score=20.33 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=26.8
Q ss_pred CcHHHHHHHhhhhhCCCCCceeEEecCccccCCccc
Q 026933 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l 56 (230)
.|+.||.....+++|+++ .-.+.-+|.+.+|=..+
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~I 60 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDVI 60 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEEE
Confidence 799999999999999984 44555677777764433
No 367
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=27.25 E-value=98 Score=27.11 Aligned_cols=75 Identities=12% Similarity=0.259 Sum_probs=59.8
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEEEe
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
....+.++.++|.++.=.++.++-...++.-+...-++....+-|- |-.++. |-.++|.++.+-+...+.|+-+-
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4467888889999999889999988999999988877877777774 666665 23689999999999888776553
No 368
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=26.92 E-value=1.3e+02 Score=19.36 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=26.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
|+|+| ....-...+.++.+.|-.++.++|.+...=.
T Consensus 1 MeIkI-Gi~~~~REl~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 1 MEIKI-GIQNVARELVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred CeEEE-eeecCCceEEEecCCCHHHHHHHHHHHHhCC
Confidence 77777 3334556677778889999999998886544
No 369
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=26.83 E-value=1.3e+02 Score=19.52 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=32.7
Q ss_pred eccccHHHHHHHhchhcC---CCCCceE-E-EECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 170 ESSDTIDNVKAKIQDKEG---IPPDQQR-L-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 170 ~~~~tV~~LK~~i~~~~g---i~~~~~~-L-~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
....|+++|.+.+.++.. ....... + ..+...+.+. ++-+++||.|-++--..||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 346799999999877653 2222112 2 2333444332 4568899999777655554
No 370
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=72 Score=27.05 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=48.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC-CCCCceeEEecC---ccccC--CccccccccccCCe
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAG---KQLED--GRTLADYNIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~~q~l~~~g---~~l~d--~~~l~~~~i~~~~~ 66 (230)
+|.|+..+|+..-..+.+.++|.-|-..+..+.. -+-+.-.|+.+- +.|+. +.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 4779999999988888999999999998887754 444444555443 33433 68999999988765
No 371
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=26.15 E-value=1.6e+02 Score=19.48 Aligned_cols=33 Identities=3% Similarity=0.262 Sum_probs=26.4
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.-|+.+.||+++...|.++.++++++-.++|-+
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvn 52 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYIN 52 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC
Confidence 558999999999999999999988654444433
No 372
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=26.08 E-value=2.3e+02 Score=19.73 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCeeeEEEccCCcE--EeeccCccCcHHHHHHHHhhHhCCC-----CCCeEEE
Q 026933 75 GGMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLI 120 (230)
Q Consensus 75 ~~~~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~ 120 (230)
+-|+.++...+++. -.+.|++++|+.++.+.+-+++.+. +....|.
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 45788887766643 4688999999999999999988743 4456654
No 373
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=25.92 E-value=29 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=13.7
Q ss_pred cHHHHHHHhhhhhCCCCCc
Q 026933 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~ 40 (230)
|+.++.+.|.+.+|+++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~ 19 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVED 19 (70)
T ss_dssp -HHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHHHHHCCCHHH
Confidence 7889999999999999753
No 374
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=25.43 E-value=64 Score=27.08 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=39.3
Q ss_pred eeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcc
Q 026933 90 TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~ 136 (230)
.+.++...||..||.-+..+.+ -+..+.-+++++..|.+..||++.-
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence 4678888999999999999998 4455677889999999999998653
No 375
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=25.36 E-value=2.1e+02 Score=19.01 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=28.1
Q ss_pred eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeec--CCCCcccc
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLAD 210 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L--~d~~~L~~ 210 (230)
.-.+.++++.|++.+-.-+.+++++.+++..++|=+..- ..+.++++
T Consensus 17 ~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~ 65 (87)
T PF04110_consen 17 QKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGD 65 (87)
T ss_dssp --EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHH
Confidence 347889999999999999999999877665555444322 34445544
No 376
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=25.19 E-value=1e+02 Score=23.07 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=32.4
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g 199 (230)
...+.+.|++..|=.++|+.|+..+|+.+...+-+ ..|
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 35799999999999999999999999988877655 444
No 377
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.08 E-value=42 Score=21.11 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=11.2
Q ss_pred CCcccccCCCCCCEEEE
Q 026933 205 GRTLADYNIQKESTLHL 221 (230)
Q Consensus 205 ~~~L~~~~i~~g~~i~l 221 (230)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 45788899999999875
No 378
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=24.71 E-value=52 Score=27.59 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEEeeccccHHHHHHHhchhcC-C-CCCceEEEECCeecCCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~g-i-~~~~~~L~~~g~~L~d~~~L~~~ 211 (230)
-.+.++...||.+||+-+..+.+ + +..+.-+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 45677889999999999999988 3 45567788999999999998843
No 379
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=23.92 E-value=3.1e+02 Score=20.38 Aligned_cols=109 Identities=21% Similarity=0.384 Sum_probs=64.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeE----EEEEEec-CCeeeEEEccCCc
Q 026933 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----HLVLRLR-GGMQIFVKTLTGK 87 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i----~l~~~~~-~~~~v~v~~~~g~ 87 (230)
|+-++-.-+|...|=.++.+..|| .|.+.+|..|...- .||-..+... .-.+... ..+.+.|+ -|
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~--vG- 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVK--VG- 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEE--Ee-
Confidence 444555567888888888887765 57888998887532 2333222211 1111111 12333332 23
Q ss_pred EEeeccCc-cCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhc
Q 026933 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 88 ~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~ 135 (230)
.+.++++. .+.+..+++...+.+.++ ..+ ..|+-+....|+.||
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~---y~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFG---YDI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCc---eEe-eeeEEeccCCchhhh
Confidence 46677777 667777776666655322 222 358888999999998
No 380
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.63 E-value=52 Score=20.73 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCcccccCCCCCCEEEEE
Q 026933 205 GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 205 ~~~L~~~~i~~g~~i~l~ 222 (230)
...|...|+++|++|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 467899999999999864
No 381
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=23.16 E-value=1.5e+02 Score=18.16 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=12.4
Q ss_pred hcCCCCCceEEEECCeecCC
Q 026933 185 KEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 185 ~~gi~~~~~~L~~~g~~L~d 204 (230)
..|.|+-...|+.+|..+.+
T Consensus 7 v~g~P~p~v~W~k~~~~l~~ 26 (76)
T cd05736 7 AEGIPLPRLTWLKNGMDITP 26 (76)
T ss_pred eeecCCCEEEEEECCEECCC
Confidence 34566666777777766643
No 382
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.67 E-value=88 Score=24.43 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCCC--eEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEEEeeec--CceEEEEeeccccHHHHHHHhchhcCC
Q 026933 113 PPDQ--QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT--GKTITLEVESSDTIDNVKAKIQDKEGI 188 (230)
Q Consensus 113 ~~~~--q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~--~~~~~~~v~~~~tV~~LK~~i~~~~gi 188 (230)
|+.. +.+.|.|..+.+.+.+-...-.+.+.+.++--..-| .+.+...+ -+...+.+++..+.+.+-...++.|||
T Consensus 157 Pv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg-~~~~ey~de~vsiSnYpLSaa~~CsKi~~~~Ee~wgI 235 (236)
T KOG3073|consen 157 PVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHG-KISVEYVDEKVSISNYPLSAALCCSKITSAFEEVWGI 235 (236)
T ss_pred CCCccEEeecCCCcccccHHhhccccCCCCCEEEEEeccccc-ccchhhhhhhcccccCcCcHHHHHHHHHHHHHHHhcc
Confidence 5443 456688888876555544322222344444333333 11111111 112234455667778888888887775
No 383
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=22.45 E-value=95 Score=19.98 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=16.4
Q ss_pred CcccccCCCCCCEEEEEEEecCCC
Q 026933 206 RTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 206 ~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|.++|+-+|+.|.+..+.-.|+
T Consensus 25 ~RL~~mG~~~G~~i~vi~~aplgd 48 (75)
T COG1918 25 RRLLSMGIVPGASITVVRKAPLGD 48 (75)
T ss_pred HHHHHcCCCCCCEEEEEEecCCCC
Confidence 466777777787777776655444
No 384
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=2.3e+02 Score=18.26 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=40.6
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhcccccCCceEEEEEe
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
+.++.++..-.+-.--++++.+|+..-.++. .|--++..++-...-++.|+.+.+..|.
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprd 90 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD 90 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEecccc
Confidence 4567777666666667778889988877765 4555666666666667788877766543
No 385
>PHA02090 hypothetical protein
Probab=22.15 E-value=16 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=21.9
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026933 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
+-.|....+++-++-+..-=-..+.-..|||.+.|+++
T Consensus 34 sk~g~lrv~e~m~dg~~ktna~flgy~igip~~eq~~f 71 (79)
T PHA02090 34 SKEGDLRVIEVMEDGGWKTNAEFLGYAIGIPVNEQKFF 71 (79)
T ss_pred ccCCceEEEEeccCCCccccceeeeeeeCccchHHHHH
Confidence 34566666666666554433344555567777777754
No 386
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=21.71 E-value=50 Score=19.92 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.2
Q ss_pred cHHHHHHHhhhhhCCCCCc
Q 026933 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~ 40 (230)
|+.++.+.|.+.+||++++
T Consensus 1 ~~~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPED 19 (60)
T ss_pred CHHHHHHHHHHHhCCCHHH
Confidence 5788999999999999864
No 387
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=21.40 E-value=4.4e+02 Score=21.27 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=37.6
Q ss_pred ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccC--CccccccccccCCeEEEE
Q 026933 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 17 v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d--~~~l~~~~i~~~~~i~l~ 70 (230)
|--++|+..|...+.+-...-++.|.|+|+|-.... ...+.+..+.++-++...
T Consensus 137 Vlfdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl~~a 192 (305)
T PF06622_consen 137 VLFDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRLYHA 192 (305)
T ss_pred EEEeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEEEee
Confidence 345799999999999988999999999999865543 234444444444444443
No 388
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=20.51 E-value=3.9e+02 Score=22.53 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.4
Q ss_pred eeccCccCcHHHHHHHHhhHh--------------C-CCCCCeEEEecCcccCCCcchhhcc---cccCCceEEEEEe
Q 026933 90 TLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRL 149 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~--------------~-i~~~~q~L~~~g~~L~d~~~l~~~~---i~~~~~i~l~~~~ 149 (230)
.+..+....|..++..|.++. . -|.+...|.++|+.|..+-||+... .+.++.|.|..|.
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 344555567888888888888 2 3555678999999999988876543 4556666565554
No 389
>PRK08453 fliD flagellar capping protein; Validated
Probab=20.50 E-value=3.5e+02 Score=25.45 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=47.9
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhC--C--------CCCCeEEEecCcccCCC------cchhhcccccCCceEEEE
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 147 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i--------~~~~q~L~~~g~~L~d~------~~l~~~~i~~~~~i~l~~ 147 (230)
.+|+.+.++|+...|+.+|..+|-+..+ + .....+|...+...-.+ .+|.+..+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4589999999999999999999985332 1 11246666665554322 233333333332111111
Q ss_pred EeecceeEEEeeecCceEEEEe
Q 026933 148 RLRGGMQIFVKTLTGKTITLEV 169 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v 169 (230)
.-.+.+.+.++...|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 1223356667666666554433
No 390
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.44 E-value=1.4e+02 Score=22.02 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=30.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
...+.+.|+...+-.++|+.|+..+++.+....-+
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 35899999999999999999999999988776554
No 391
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.22 E-value=2.8e+02 Score=18.45 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=28.8
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhC-CCCCCeEEEecCc
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGK 124 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~ 124 (230)
+.|.++-+.+.|..+|+.++++.+. .......+.|...
T Consensus 17 RRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~De 55 (87)
T cd06402 17 RRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDE 55 (87)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 4567777777899999999999974 4455677777653
No 392
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=20.21 E-value=1.4e+02 Score=19.26 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933 177 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 177 ~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
.++..++..+|.+.+..++..+..-=.-...+..--+.-|..|++
T Consensus 5 ~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 5 SIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 578899999999999999988743222233455555677888877
Done!