Query 026933
Match_columns 230
No_of_seqs 313 out of 2261
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 3.5E-39 1.2E-43 242.1 17.9 153 1-153 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 2.2E-38 7.5E-43 237.8 17.7 153 77-229 3-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 1.4E-38 4.7E-43 241.7 15.5 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 8.8E-38 3E-42 237.3 15.9 155 74-228 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 4.1E-37 1.4E-41 229.2 17.7 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 4.2E-36 1.4E-40 223.7 17.6 152 77-228 1-152 (152)
7 2kdi_A Ubiquitin, vacuolar pro 99.8 6.8E-22 2.3E-26 139.2 3.3 101 1-101 10-113 (114)
8 3phx_B Ubiquitin-like protein 99.8 1.5E-20 5.1E-25 124.0 9.2 74 1-74 5-78 (79)
9 3plu_A Ubiquitin-like modifier 99.8 1.9E-20 6.5E-25 124.5 8.5 70 1-70 22-91 (93)
10 2kk8_A Uncharacterized protein 99.8 2E-20 6.9E-25 124.5 8.0 73 1-73 11-84 (84)
11 4fbj_B NEDD8; effector-HOST ta 99.8 2.7E-20 9.4E-25 125.2 8.5 77 1-77 1-77 (88)
12 1yx5_B Ubiquitin; proteasome, 99.8 5.9E-20 2E-24 126.1 9.4 91 1-91 1-91 (98)
13 2kdi_A Ubiquitin, vacuolar pro 99.8 3.1E-21 1.1E-25 135.8 2.6 104 74-177 7-113 (114)
14 4eew_A Large proline-rich prot 99.8 6.3E-20 2.2E-24 123.5 7.6 88 60-148 1-88 (88)
15 2lxa_A Ubiquitin-like protein 99.8 5.9E-20 2E-24 122.5 6.9 74 1-74 2-79 (87)
16 3phx_B Ubiquitin-like protein 99.8 2.1E-19 7E-24 118.5 9.4 77 151-227 3-79 (79)
17 1ndd_A NEDD8, protein (ubiquit 99.8 2E-19 6.9E-24 117.6 9.3 75 1-75 1-75 (76)
18 3plu_A Ubiquitin-like modifier 99.8 1.5E-19 5E-24 120.3 8.0 77 71-147 16-92 (93)
19 4fbj_B NEDD8; effector-HOST ta 99.8 1.5E-19 5.1E-24 121.5 8.0 77 153-229 1-77 (88)
20 4eew_A Large proline-rich prot 99.8 2.5E-19 8.4E-24 120.6 8.8 88 136-224 1-88 (88)
21 2faz_A Ubiquitin-like containi 99.8 2.3E-19 7.8E-24 118.0 8.3 73 1-73 3-77 (78)
22 3a9j_A Ubiquitin; protein comp 99.8 3.8E-19 1.3E-23 116.2 9.4 75 1-75 1-75 (76)
23 3v6c_B Ubiquitin; structural g 99.8 2E-19 6.9E-24 121.7 8.3 73 1-73 18-90 (91)
24 1uh6_A Ubiquitin-like 5; beta- 99.8 1.3E-19 4.3E-24 123.0 7.1 70 1-70 29-98 (100)
25 1sif_A Ubiquitin; hydrophobic 99.8 2.8E-19 9.6E-24 120.2 8.6 75 1-75 10-84 (88)
26 4dwf_A HLA-B-associated transc 99.8 2.7E-19 9.4E-24 120.9 8.6 74 1-75 6-79 (90)
27 2hj8_A Interferon-induced 17 k 99.8 2.2E-19 7.6E-24 120.7 8.0 75 1-75 5-79 (88)
28 3dbh_I NEDD8; cell cycle, acti 99.8 2E-19 6.9E-24 121.0 7.7 75 1-75 13-87 (88)
29 4hcn_B Polyubiquitin, ubiquiti 99.8 3.1E-19 1.1E-23 122.4 8.5 75 1-75 23-97 (98)
30 3n3k_B Ubiquitin; hydrolase, p 99.8 3.3E-19 1.1E-23 119.2 8.4 75 1-75 4-78 (85)
31 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.7E-19 1.6E-23 121.2 9.3 79 1-79 2-80 (96)
32 1sif_A Ubiquitin; hydrophobic 99.8 3.6E-19 1.2E-23 119.7 8.0 80 151-230 8-87 (88)
33 2uyz_B Small ubiquitin-related 99.8 3.8E-19 1.3E-23 117.2 7.3 75 1-75 4-78 (79)
34 3mtn_B UBA80, ubcep1, ubiquiti 99.8 6.8E-19 2.3E-23 117.6 8.5 75 1-75 4-78 (85)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 6.4E-19 2.2E-23 118.3 8.3 76 1-76 8-83 (87)
36 1yx5_B Ubiquitin; proteasome, 99.8 6.3E-19 2.1E-23 121.0 8.4 91 77-167 1-91 (98)
37 3n3k_B Ubiquitin; hydrolase, p 99.8 7.8E-19 2.7E-23 117.3 8.3 78 152-229 3-80 (85)
38 1ndd_A NEDD8, protein (ubiquit 99.8 1E-18 3.4E-23 114.2 8.6 76 153-228 1-76 (76)
39 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1E-18 3.5E-23 119.5 8.8 78 152-229 1-78 (96)
40 3dbh_I NEDD8; cell cycle, acti 99.8 6.5E-19 2.2E-23 118.5 7.6 78 151-228 11-88 (88)
41 2dzi_A Ubiquitin-like protein 99.8 1E-18 3.5E-23 115.7 8.3 73 1-73 8-80 (81)
42 1wy8_A NP95-like ring finger p 99.8 1.3E-18 4.3E-23 117.4 8.8 76 1-76 8-85 (89)
43 1uel_A HHR23B, UV excision rep 99.8 2E-18 6.9E-23 117.7 9.8 73 1-73 1-76 (95)
44 2kan_A Uncharacterized protein 99.8 9.3E-19 3.2E-23 118.9 8.1 75 1-76 16-91 (94)
45 3m62_B UV excision repair prot 99.8 5.4E-19 1.9E-23 122.8 7.0 74 1-74 2-75 (106)
46 2wyq_A HHR23A, UV excision rep 99.8 1.6E-18 5.5E-23 115.8 9.0 74 1-74 6-82 (85)
47 4a20_A Ubiquitin-like protein 99.8 1.1E-18 3.7E-23 118.9 8.1 73 1-73 20-96 (98)
48 3vdz_A Ubiquitin-40S ribosomal 99.8 1.4E-18 4.7E-23 121.8 8.9 75 1-75 36-110 (111)
49 3a9j_A Ubiquitin; protein comp 99.8 1.9E-18 6.4E-23 112.9 8.9 76 153-228 1-76 (76)
50 4ajy_B Transcription elongatio 99.8 1.1E-18 3.8E-23 121.1 8.2 74 1-74 1-82 (118)
51 3l0w_B Monoubiquitinated proli 99.8 1.9E-18 6.6E-23 129.7 10.0 124 1-128 1-128 (169)
52 2kk8_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 115.7 8.0 75 75-149 9-84 (84)
53 4hcn_B Polyubiquitin, ubiquiti 99.8 1.2E-18 3.9E-23 119.6 7.9 78 151-228 21-98 (98)
54 2hj8_A Interferon-induced 17 k 99.8 1E-18 3.5E-23 117.5 7.4 79 151-229 3-81 (88)
55 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.9E-18 6.5E-23 115.4 8.5 78 152-229 3-80 (85)
56 1wyw_B Ubiquitin-like protein 99.8 1.2E-18 4E-23 119.2 7.5 75 1-75 22-96 (97)
57 2uyz_B Small ubiquitin-related 99.8 1.4E-18 4.7E-23 114.5 7.5 76 153-228 4-79 (79)
58 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.7E-18 9.1E-23 115.2 9.0 79 151-229 6-84 (87)
59 3b1l_X E3 ubiquitin-protein li 99.6 4.5E-20 1.5E-24 120.8 0.0 75 1-75 1-75 (76)
60 2kan_A Uncharacterized protein 99.8 2.5E-18 8.7E-23 116.8 8.7 78 151-229 14-92 (94)
61 2l7r_A Ubiquitin-like protein 99.8 1.7E-18 5.9E-23 117.5 7.7 73 1-75 20-92 (93)
62 2bwf_A Ubiquitin-like protein 99.8 3E-18 1E-22 112.3 8.6 72 1-73 5-76 (77)
63 2fnj_B Transcription elongatio 99.8 1.6E-18 5.3E-23 120.9 7.6 72 1-72 1-80 (118)
64 3q3f_A Ribonuclease/ubiquitin 99.8 9E-19 3.1E-23 132.9 6.9 82 1-82 106-187 (189)
65 2ojr_A Ubiquitin; lanthide-bin 99.8 2.4E-18 8.1E-23 120.6 8.2 92 137-228 12-111 (111)
66 1wy8_A NP95-like ring finger p 99.7 6.6E-18 2.2E-22 113.8 9.5 80 151-230 6-87 (89)
67 1wyw_B Ubiquitin-like protein 99.7 3.1E-18 1.1E-22 117.1 7.9 79 150-228 19-97 (97)
68 3v6c_B Ubiquitin; structural g 99.7 3.2E-18 1.1E-22 115.8 7.8 76 74-149 15-90 (91)
69 2faz_A Ubiquitin-like containi 99.7 3.5E-18 1.2E-22 112.3 7.7 75 75-149 1-77 (78)
70 4dwf_A HLA-B-associated transc 99.7 3.7E-18 1.3E-22 115.3 7.7 78 75-153 4-81 (90)
71 3vdz_A Ubiquitin-40S ribosomal 99.7 6.7E-18 2.3E-22 118.2 9.2 77 152-228 35-111 (111)
72 2lxa_A Ubiquitin-like protein 99.7 3.7E-18 1.3E-22 113.7 7.1 74 77-150 2-79 (87)
73 2l7r_A Ubiquitin-like protein 99.7 3.6E-18 1.2E-22 115.9 7.1 77 150-228 17-93 (93)
74 1uh6_A Ubiquitin-like 5; beta- 99.7 4E-18 1.4E-22 115.6 6.9 71 76-146 28-98 (100)
75 1ttn_A DC-UBP, dendritic cell- 99.7 5.2E-18 1.8E-22 117.9 7.5 73 1-73 24-96 (106)
76 1wgd_A Homocysteine-responsive 99.7 6E-18 2.1E-22 114.9 7.6 75 1-75 8-88 (93)
77 1v2y_A 3300001G02RIK protein; 99.7 2.1E-18 7.3E-23 118.5 5.3 76 1-76 8-99 (105)
78 3l0w_B Monoubiquitinated proli 99.7 6.4E-18 2.2E-22 126.9 8.3 83 77-159 1-83 (169)
79 2ojr_A Ubiquitin; lanthide-bin 99.7 1.5E-17 5E-22 116.6 9.4 75 1-75 36-110 (111)
80 1yqb_A Ubiquilin 3; structural 99.7 8.7E-18 3E-22 115.4 7.9 74 1-75 23-96 (100)
81 2dzi_A Ubiquitin-like protein 99.7 1.3E-17 4.6E-22 110.2 8.6 75 75-149 6-80 (81)
82 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.4E-17 4.9E-22 114.6 8.9 73 1-74 26-98 (101)
83 2fnj_B Transcription elongatio 99.7 1.2E-17 4.1E-22 116.5 8.2 77 153-230 1-85 (118)
84 4ajy_B Transcription elongatio 99.7 1.9E-17 6.4E-22 115.0 9.0 77 153-230 1-85 (118)
85 3m63_B Ubiquitin domain-contai 99.7 3.9E-18 1.3E-22 117.4 5.2 92 54-148 8-99 (101)
86 1wgd_A Homocysteine-responsive 99.7 1.5E-17 5.2E-22 112.9 7.8 80 151-230 6-91 (93)
87 2wyq_A HHR23A, UV excision rep 99.7 2.4E-17 8.2E-22 110.1 8.6 77 74-150 3-82 (85)
88 1wju_A NEDD8 ultimate buster-1 99.7 2.1E-17 7.2E-22 112.1 8.3 72 79-151 18-93 (100)
89 1wx8_A Riken cDNA 4931431F19; 99.7 6.8E-18 2.3E-22 115.4 5.8 74 1-75 18-91 (96)
90 1wju_A NEDD8 ultimate buster-1 99.7 2.4E-17 8.3E-22 111.8 8.4 74 155-229 18-95 (100)
91 4a20_A Ubiquitin-like protein 99.7 1.6E-17 5.6E-22 113.1 7.5 77 74-150 17-97 (98)
92 1uel_A HHR23B, UV excision rep 99.7 3.4E-17 1.2E-21 111.6 9.1 74 77-150 1-77 (95)
93 4dbg_A Ranbp-type and C3HC4-ty 99.7 2.9E-17 1E-21 112.2 8.7 73 1-73 25-100 (105)
94 1we6_A Splicing factor, putati 99.7 1.6E-17 5.4E-22 116.5 7.6 76 1-76 28-107 (111)
95 3m62_B UV excision repair prot 99.7 1.4E-17 4.9E-22 115.6 6.8 75 77-151 2-76 (106)
96 3u5e_m 60S ribosomal protein L 99.7 6.9E-19 2.3E-23 126.5 0.0 76 1-76 1-76 (128)
97 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4E-17 1.4E-21 114.1 8.7 74 1-74 17-100 (116)
98 1j8c_A Ubiquitin-like protein 99.7 3.8E-17 1.3E-21 116.6 8.8 74 1-75 33-106 (125)
99 1we6_A Splicing factor, putati 99.7 2.5E-17 8.7E-22 115.4 7.7 80 150-229 25-108 (111)
100 3q3f_A Ribonuclease/ubiquitin 99.7 1.4E-17 4.7E-22 126.4 6.6 84 75-158 104-187 (189)
101 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3.9E-17 1.3E-21 113.5 7.9 74 1-75 18-91 (106)
102 3b1l_X E3 ubiquitin-protein li 99.5 1.1E-18 3.9E-23 114.0 0.0 75 77-151 1-75 (76)
103 2bwf_A Ubiquitin-like protein 99.7 6E-17 2.1E-21 106.0 8.1 71 77-148 5-75 (77)
104 1v5o_A 1700011N24RIK protein; 99.7 2.9E-17 9.8E-22 113.3 6.6 74 1-74 8-86 (102)
105 3u5c_f 40S ribosomal protein S 99.7 1.6E-18 5.5E-23 127.3 0.0 75 1-75 1-75 (152)
106 1se9_A Ubiquitin family; ubiqu 99.7 8.9E-17 3E-21 113.3 8.7 75 1-75 17-105 (126)
107 1we7_A SF3A1 protein; structur 99.7 1.1E-16 3.9E-21 112.7 9.3 69 161-229 44-112 (115)
108 2gow_A HCG-1 protein, ubiquiti 99.7 7.6E-17 2.6E-21 114.3 8.2 74 1-74 18-101 (125)
109 3m63_B Ubiquitin domain-contai 99.7 1.7E-17 5.9E-22 114.1 4.5 93 129-224 7-99 (101)
110 1v2y_A 3300001G02RIK protein; 99.7 2.7E-17 9.1E-22 113.0 5.4 77 76-152 7-99 (105)
111 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.1E-16 3.9E-21 110.1 8.3 80 71-151 20-99 (101)
112 2kdb_A Homocysteine-responsive 99.7 4.8E-17 1.6E-21 111.0 6.3 70 1-70 24-99 (99)
113 1yqb_A Ubiquilin 3; structural 99.7 1.2E-16 4.3E-21 109.6 8.2 78 151-229 21-98 (100)
114 2kd0_A LRR repeats and ubiquit 99.7 1.2E-16 4.1E-21 106.5 7.9 70 3-72 14-83 (85)
115 1v5t_A 8430435I17RIK protein; 99.7 6.9E-17 2.3E-21 108.9 6.6 72 1-73 8-83 (90)
116 1wx8_A Riken cDNA 4931431F19; 99.7 4.6E-17 1.6E-21 111.2 5.9 77 152-229 17-93 (96)
117 1wgg_A Ubiquitin carboxyl-term 99.7 7.9E-17 2.7E-21 109.7 6.7 71 1-73 8-79 (96)
118 1ttn_A DC-UBP, dendritic cell- 99.7 1.8E-16 6.2E-21 110.1 8.6 79 151-229 22-100 (106)
119 1j8c_A Ubiquitin-like protein 99.7 2.6E-16 9E-21 112.2 9.1 77 152-229 32-108 (125)
120 3u5c_f 40S ribosomal protein S 99.7 6.5E-18 2.2E-22 124.1 0.0 77 153-229 1-77 (152)
121 3u5e_m 60S ribosomal protein L 99.7 7.9E-18 2.7E-22 120.9 0.3 77 153-229 1-77 (128)
122 2dzm_A FAS-associated factor 1 99.7 1.1E-16 3.9E-21 109.0 5.8 73 1-73 9-82 (100)
123 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.4E-16 1.5E-20 108.2 8.4 76 153-229 18-93 (106)
124 1we7_A SF3A1 protein; structur 99.6 4.2E-16 1.4E-20 109.8 8.4 68 85-152 44-111 (115)
125 1wgh_A Ubiquitin-like 3, HCG-1 99.6 4E-16 1.4E-20 109.1 8.1 78 74-151 14-101 (116)
126 1x1m_A Ubiquitin-like protein 99.6 2.8E-16 9.6E-21 109.3 7.2 74 1-74 13-101 (107)
127 1se9_A Ubiquitin family; ubiqu 99.6 9E-16 3.1E-20 108.2 9.8 79 151-229 15-107 (126)
128 1wia_A Hypothetical ubiquitin- 99.6 3.7E-16 1.3E-20 106.4 7.5 71 1-74 8-79 (95)
129 1v86_A DNA segment, CHR 7, way 99.6 1.8E-16 6.2E-21 107.8 5.7 70 1-72 18-87 (95)
130 1wxv_A BAG-family molecular ch 99.6 4.5E-16 1.5E-20 105.4 7.3 72 1-73 8-85 (92)
131 2dzj_A Synaptic glycoprotein S 99.6 3.3E-16 1.1E-20 104.7 6.2 69 1-69 11-85 (88)
132 1v5o_A 1700011N24RIK protein; 99.6 4E-16 1.4E-20 107.6 6.6 78 152-229 7-89 (102)
133 4dbg_A Ranbp-type and C3HC4-ty 99.6 1E-15 3.6E-20 104.5 8.2 73 76-148 24-99 (105)
134 1v5t_A 8430435I17RIK protein; 99.6 1.3E-15 4.4E-20 102.6 8.3 74 75-149 6-83 (90)
135 2daf_A FLJ35834 protein; hypot 99.6 1.7E-15 6E-20 104.4 9.0 77 76-152 15-92 (118)
136 2kjr_A CG11242; UBL, ubiquitin 99.6 1.2E-15 4.1E-20 103.3 8.1 70 1-70 16-93 (95)
137 2kdb_A Homocysteine-responsive 99.6 5.2E-16 1.8E-20 105.9 6.2 72 75-146 22-99 (99)
138 2daf_A FLJ35834 protein; hypot 99.6 1.1E-15 3.9E-20 105.3 7.5 77 2-78 17-94 (118)
139 4b6w_A Tubulin-specific chaper 99.6 1.5E-15 5.3E-20 100.9 7.5 71 2-72 4-83 (86)
140 2kd0_A LRR repeats and ubiquit 99.6 2.9E-15 1E-19 99.7 8.5 70 155-224 14-83 (85)
141 1x1m_A Ubiquitin-like protein 99.6 2.4E-15 8.3E-20 104.5 8.4 76 75-150 11-101 (107)
142 2gow_A HCG-1 protein, ubiquiti 99.6 1.9E-15 6.5E-20 107.1 7.8 77 153-229 18-104 (125)
143 2xzm_9 RPS31E; ribosome, trans 99.6 5.9E-17 2E-21 122.1 0.0 71 1-76 1-71 (189)
144 3ai5_A Yeast enhanced green fl 99.6 2.8E-15 9.6E-20 121.6 8.4 73 1-73 234-306 (307)
145 1wia_A Hypothetical ubiquitin- 99.6 3.1E-15 1E-19 101.9 6.8 74 75-151 6-80 (95)
146 1wxv_A BAG-family molecular ch 99.6 6.4E-15 2.2E-19 99.6 7.9 75 75-150 6-86 (92)
147 2kj6_A Tubulin folding cofacto 99.6 6E-15 2E-19 100.1 7.7 70 2-71 16-94 (97)
148 1wgg_A Ubiquitin carboxyl-term 99.6 2E-15 7E-20 102.7 5.0 72 76-149 7-79 (96)
149 2kjr_A CG11242; UBL, ubiquitin 99.6 9.2E-15 3.1E-19 99.0 7.8 73 74-146 13-93 (95)
150 1wf9_A NPL4 family protein; be 99.6 5.6E-15 1.9E-19 102.6 6.6 72 1-73 8-95 (107)
151 1v86_A DNA segment, CHR 7, way 99.6 4.9E-15 1.7E-19 100.7 5.8 73 75-149 16-88 (95)
152 2dzm_A FAS-associated factor 1 99.5 6.6E-15 2.3E-19 100.3 5.9 74 76-149 8-82 (100)
153 4b6w_A Tubulin-specific chaper 99.5 1.1E-14 3.8E-19 96.7 6.5 66 84-149 12-84 (86)
154 2io1_B Small ubiquitin-related 99.5 3.3E-14 1.1E-18 96.0 8.7 79 152-230 7-85 (94)
155 1v6e_A Cytoskeleton-associated 99.5 2.3E-14 7.7E-19 97.4 7.5 70 2-71 9-86 (95)
156 1oqy_A HHR23A, UV excision rep 99.5 1.4E-14 4.7E-19 120.8 7.6 74 1-74 8-85 (368)
157 2dzj_A Synaptic glycoprotein S 99.5 9.1E-15 3.1E-19 97.7 5.2 70 76-145 10-85 (88)
158 2kj6_A Tubulin folding cofacto 99.5 3.8E-14 1.3E-18 96.2 7.8 72 76-147 14-94 (97)
159 3ai5_A Yeast enhanced green fl 99.5 4.1E-14 1.4E-18 114.8 9.0 76 74-149 231-306 (307)
160 2xzm_9 RPS31E; ribosome, trans 99.5 1.7E-15 5.9E-20 114.1 0.2 72 153-229 1-72 (189)
161 1t0y_A Tubulin folding cofacto 99.5 8.8E-14 3E-18 98.8 8.3 72 1-72 7-86 (122)
162 2io0_B Small ubiquitin-related 99.5 1.9E-13 6.6E-18 91.6 9.3 78 152-229 5-82 (91)
163 2io1_B Small ubiquitin-related 99.5 8.7E-14 3E-18 94.0 7.0 79 75-153 6-84 (94)
164 2kzr_A Ubiquitin thioesterase 99.5 5.6E-14 1.9E-18 93.7 5.9 71 1-72 1-77 (86)
165 1oqy_A HHR23A, UV excision rep 99.5 9.3E-14 3.2E-18 115.8 7.6 77 75-151 6-86 (368)
166 1v6e_A Cytoskeleton-associated 99.4 1.8E-13 6.1E-18 93.0 6.3 71 77-147 8-86 (95)
167 2io0_B Small ubiquitin-related 99.4 4.5E-13 1.5E-17 89.8 7.4 79 75-153 4-82 (91)
168 2d07_B Ubiquitin-like protein 99.4 7.6E-13 2.6E-17 89.2 8.6 77 152-228 17-93 (93)
169 3shq_A UBLCP1; phosphatase, hy 99.4 2.3E-13 7.9E-18 111.8 6.7 75 1-76 6-83 (320)
170 1wf9_A NPL4 family protein; be 99.4 2.2E-13 7.4E-18 94.5 5.5 72 76-148 7-94 (107)
171 1t0y_A Tubulin folding cofacto 99.4 1.5E-12 5.1E-17 92.4 8.6 71 153-223 7-85 (122)
172 1wz0_A Ubiquitin-like protein 99.4 6.9E-13 2.4E-17 91.0 6.5 78 152-229 24-101 (104)
173 1wm3_A Ubiquitin-like protein 99.4 1.6E-12 5.6E-17 83.5 7.7 70 1-70 2-71 (72)
174 2d07_B Ubiquitin-like protein 99.4 1.3E-12 4.5E-17 88.0 7.1 79 74-152 15-93 (93)
175 2eke_C Ubiquitin-like protein 99.4 2.5E-12 8.5E-17 88.3 8.3 75 153-228 32-106 (106)
176 2kzr_A Ubiquitin thioesterase 99.4 7.7E-13 2.6E-17 88.1 5.6 70 77-147 1-76 (86)
177 1wm3_A Ubiquitin-like protein 99.4 2.2E-12 7.6E-17 82.8 7.3 70 77-146 2-71 (72)
178 1wz0_A Ubiquitin-like protein 99.3 2.1E-12 7.1E-17 88.6 6.7 78 75-152 23-100 (104)
179 2k8h_A Small ubiquitin protein 99.3 2.2E-12 7.4E-17 89.2 6.5 81 74-154 24-104 (110)
180 3a4r_A Nfatc2-interacting prot 99.3 9.7E-12 3.3E-16 81.2 8.8 72 75-146 6-78 (79)
181 2k8h_A Small ubiquitin protein 99.3 2.3E-12 7.9E-17 89.1 5.7 77 152-228 26-102 (110)
182 3a4r_A Nfatc2-interacting prot 99.3 1E-11 3.5E-16 81.1 8.2 70 1-70 8-78 (79)
183 2eke_C Ubiquitin-like protein 99.3 4.1E-12 1.4E-16 87.2 6.4 77 75-152 30-106 (106)
184 3shq_A UBLCP1; phosphatase, hy 99.3 3.3E-12 1.1E-16 104.9 5.9 76 76-152 5-83 (320)
185 1wjn_A Tubulin-folding protein 99.3 2.1E-11 7.1E-16 83.0 8.3 70 2-71 11-91 (97)
186 1wjn_A Tubulin-folding protein 99.2 2E-10 6.9E-15 78.1 9.0 71 154-224 11-92 (97)
187 3kyd_D Small ubiquitin-related 99.1 8.5E-10 2.9E-14 76.4 9.4 75 153-227 41-115 (115)
188 3kyd_D Small ubiquitin-related 99.0 8.9E-10 3E-14 76.3 7.7 75 75-149 39-113 (115)
189 3tix_A Ubiquitin-like protein 99.0 1.1E-09 3.6E-14 81.7 6.7 76 153-229 58-133 (207)
190 3pge_A SUMO-modified prolifera 99.0 2.4E-09 8E-14 81.5 8.6 76 153-229 30-105 (200)
191 3pge_A SUMO-modified prolifera 98.9 4.3E-09 1.5E-13 80.0 7.2 79 73-152 26-104 (200)
192 3tix_A Ubiquitin-like protein 98.8 2.7E-09 9.2E-14 79.5 4.8 80 73-153 54-133 (207)
193 3goe_A DNA repair protein RAD6 98.8 2.3E-08 7.7E-13 63.1 7.8 71 77-147 10-81 (82)
194 3v7o_A Minor nucleoprotein VP3 98.8 6.8E-10 2.3E-14 83.9 0.5 79 151-230 20-98 (227)
195 2pjh_A Protein NPL4, nuclear p 98.8 5.5E-09 1.9E-13 68.1 4.2 69 1-70 5-78 (80)
196 3goe_A DNA repair protein RAD6 98.8 8.2E-08 2.8E-12 60.5 9.3 70 154-223 11-81 (82)
197 3v7o_A Minor nucleoprotein VP3 98.7 1.4E-09 4.9E-14 82.1 0.1 83 71-154 16-98 (227)
198 2pjh_A Protein NPL4, nuclear p 98.6 3.2E-08 1.1E-12 64.4 4.9 70 76-146 4-78 (80)
199 3ivf_A Talin-1; FERM domain, c 98.5 4.3E-06 1.5E-10 70.2 16.3 136 86-224 12-167 (371)
200 2jxx_A Nfatc2-interacting prot 98.5 4E-07 1.4E-11 61.1 7.7 72 75-146 24-96 (97)
201 2jxx_A Nfatc2-interacting prot 98.5 6.9E-07 2.3E-11 60.0 8.3 70 153-222 26-96 (97)
202 4efo_A Serine/threonine-protei 98.5 3.9E-07 1.3E-11 60.5 6.5 58 8-65 21-80 (94)
203 2al3_A TUG long isoform; TUG U 98.5 4.5E-07 1.5E-11 59.4 6.5 74 151-224 8-81 (90)
204 3uf8_A Ubiquitin-like protein 98.4 1.2E-06 4.1E-11 67.6 8.1 78 151-229 20-97 (209)
205 3ivf_A Talin-1; FERM domain, c 98.4 2.3E-05 7.8E-10 65.8 16.4 138 4-145 7-164 (371)
206 3ix6_A TS, tsase, thymidylate 98.4 5.5E-08 1.9E-12 80.1 0.2 80 149-229 18-97 (360)
207 2al3_A TUG long isoform; TUG U 98.3 2.8E-06 9.7E-11 55.6 7.6 74 75-148 8-81 (90)
208 3ix6_A TS, tsase, thymidylate 98.3 7.2E-08 2.5E-12 79.4 -0.0 83 70-153 15-97 (360)
209 2l76_A Nfatc2-interacting prot 98.3 5.1E-06 1.8E-10 54.8 7.9 72 76-148 21-92 (95)
210 3uf8_A Ubiquitin-like protein 98.2 1.5E-06 5.1E-11 67.1 5.8 82 70-152 15-96 (209)
211 2kc2_A Talin-1, F1; FERM, adhe 98.2 2.5E-06 8.7E-11 59.9 6.0 70 3-72 14-122 (128)
212 2ylm_A Ubiquitin carboxyl-term 98.2 5.5E-05 1.9E-09 66.3 15.5 184 12-196 37-286 (530)
213 2l76_A Nfatc2-interacting prot 98.2 8.1E-06 2.8E-10 53.9 7.8 70 153-223 22-91 (95)
214 4efo_A Serine/threonine-protei 98.1 7.1E-06 2.4E-10 54.4 6.6 64 161-224 22-88 (94)
215 2kc2_A Talin-1, F1; FERM, adhe 98.0 6.9E-06 2.4E-10 57.7 5.3 71 154-224 13-122 (128)
216 4da1_A Protein phosphatase 1K, 98.0 9.3E-07 3.2E-11 74.7 0.0 76 153-229 31-106 (389)
217 4da1_A Protein phosphatase 1K, 98.0 9.7E-07 3.3E-11 74.6 0.0 83 74-157 28-110 (389)
218 2bps_A YUKD protein; ubiquitin 97.8 7.7E-05 2.6E-09 48.1 6.4 68 2-69 6-80 (81)
219 2ylm_A Ubiquitin carboxyl-term 97.7 0.0085 2.9E-07 52.4 19.8 198 9-206 251-501 (530)
220 3qx1_A FAS-associated factor 1 97.6 0.00026 8.9E-09 46.1 7.7 70 153-223 8-82 (84)
221 3qx1_A FAS-associated factor 1 97.6 0.00051 1.8E-08 44.7 8.6 68 2-70 9-81 (84)
222 2bps_A YUKD protein; ubiquitin 97.6 0.00022 7.5E-09 45.9 6.4 62 160-221 14-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 97.3 0.00055 1.9E-08 48.0 6.5 71 75-146 42-117 (124)
224 2dzk_A UBX domain-containing p 97.3 0.0014 4.8E-08 44.9 8.3 71 76-146 13-88 (109)
225 2dzk_A UBX domain-containing p 97.2 0.0024 8.3E-08 43.7 8.6 70 2-71 15-89 (109)
226 1wj4_A KIAA0794 protein; UBX d 97.1 0.0019 6.6E-08 45.2 7.3 71 153-224 44-119 (124)
227 2daj_A KIAA0977 protein, COBL- 96.9 0.0029 9.8E-08 40.5 6.0 65 75-139 9-76 (91)
228 2l32_A Small archaeal modifier 96.9 0.0052 1.8E-07 38.8 7.2 60 1-70 1-60 (74)
229 2daj_A KIAA0977 protein, COBL- 96.8 0.0026 9E-08 40.6 5.0 63 153-215 11-76 (91)
230 2cr5_A Reproduction 8; UBX dom 96.7 0.0061 2.1E-07 41.6 7.1 70 76-146 23-96 (109)
231 2cr5_A Reproduction 8; UBX dom 96.6 0.0082 2.8E-07 41.0 6.9 71 153-224 24-98 (109)
232 1s3s_G P47 protein; AAA ATPase 96.4 0.01 3.5E-07 41.7 6.8 66 76-141 52-121 (127)
233 4a3p_A Ubiquitin carboxyl-term 96.0 0.021 7E-07 44.0 7.2 66 164-229 141-213 (217)
234 2juo_A GA-binding protein alph 95.9 0.074 2.5E-06 33.8 8.0 62 165-226 5-66 (89)
235 1s3s_G P47 protein; AAA ATPase 95.9 0.019 6.4E-07 40.3 6.0 65 2-66 54-122 (127)
236 3jyu_A Ubiquitin carboxyl-term 95.8 0.048 1.6E-06 42.3 8.5 65 164-228 153-224 (231)
237 4e71_A Plexin-B2, MM1; transme 95.6 0.071 2.4E-06 36.2 7.6 63 162-224 23-110 (111)
238 4e71_A Plexin-B2, MM1; transme 95.5 0.059 2E-06 36.5 7.0 62 86-147 23-109 (111)
239 1ryj_A Unknown; beta/alpha pro 95.4 0.24 8.1E-06 30.6 9.7 66 153-229 5-70 (70)
240 2r2o_A Plexin-B1; effector dom 95.3 0.093 3.2E-06 36.9 7.6 65 162-226 40-130 (138)
241 3h6n_A Plexin-D1; structural g 95.2 0.19 6.7E-06 34.8 8.9 65 161-225 15-105 (127)
242 2l32_A Small archaeal modifier 95.2 0.043 1.5E-06 34.5 5.2 66 77-152 1-66 (74)
243 2r2o_A Plexin-B1; effector dom 95.1 0.069 2.3E-06 37.6 6.5 64 86-149 40-129 (138)
244 4a3p_A Ubiquitin carboxyl-term 95.1 0.052 1.8E-06 41.7 6.6 62 88-149 141-209 (217)
245 1oey_A P67-PHOX, neutrophil cy 94.8 0.065 2.2E-06 34.4 5.2 46 77-124 6-51 (83)
246 3jyu_A Ubiquitin carboxyl-term 94.8 0.078 2.7E-06 41.2 6.7 62 89-150 154-222 (231)
247 1ryj_A Unknown; beta/alpha pro 94.6 0.16 5.6E-06 31.3 6.7 63 76-148 4-66 (70)
248 3rpf_C Molybdopterin convertin 94.5 0.17 5.9E-06 31.5 6.8 68 1-73 1-71 (74)
249 2juo_A GA-binding protein alph 94.3 0.26 9E-06 31.3 7.0 60 13-72 5-64 (89)
250 3h6n_A Plexin-D1; structural g 94.3 0.22 7.4E-06 34.5 7.2 65 84-148 14-104 (127)
251 2kvr_A Ubiquitin carboxyl-term 93.9 0.058 2E-06 37.9 4.0 35 12-46 57-91 (130)
252 4e74_A Plexin-A4; RBD, structu 93.8 0.22 7.6E-06 34.1 6.5 63 86-148 26-114 (117)
253 1oey_A P67-PHOX, neutrophil cy 93.7 0.16 5.6E-06 32.5 5.3 45 3-47 6-50 (83)
254 4e74_A Plexin-A4; RBD, structu 93.6 0.18 6.3E-06 34.5 5.8 64 162-225 26-115 (117)
255 1vjk_A Molybdopterin convertin 92.9 0.6 2.1E-05 30.8 7.5 69 75-148 8-94 (98)
256 1vjk_A Molybdopterin convertin 92.7 0.87 3E-05 30.0 8.1 61 163-229 27-98 (98)
257 1tyg_B YJBS; alpha beta barrel 92.6 0.52 1.8E-05 30.5 6.7 58 166-229 29-87 (87)
258 1ef1_A Moesin; membrane, FERM 92.2 0.69 2.4E-05 36.9 8.5 72 153-225 2-79 (294)
259 1tyg_B YJBS; alpha beta barrel 91.3 0.85 2.9E-05 29.5 6.5 59 8-73 25-84 (87)
260 3kuz_A Plexin-C1; structural g 91.1 1.1 3.6E-05 31.0 7.0 61 163-223 39-125 (126)
261 3dwg_C 9.5 kDa culture filtrat 90.7 1.2 4.2E-05 28.8 7.1 71 1-73 1-90 (93)
262 1h4r_A Merlin; FERM, neurofibr 90.4 1.3 4.3E-05 35.7 8.4 74 151-225 21-99 (314)
263 2k5p_A THis protein, thiamine- 90.2 0.7 2.4E-05 29.2 5.3 63 85-152 6-69 (78)
264 1ip9_A BEM1 protein; ubiquitin 90.2 0.95 3.2E-05 28.9 5.7 31 7-37 18-48 (85)
265 3kuz_A Plexin-C1; structural g 90.2 2.1 7.1E-05 29.5 7.9 60 11-70 39-124 (126)
266 3rpf_C Molybdopterin convertin 90.1 1.6 5.5E-05 26.9 7.0 57 167-228 16-74 (74)
267 1vd2_A Protein kinase C, IOTA 90.1 1.4 4.9E-05 28.5 6.7 45 3-47 7-53 (89)
268 2kvr_A Ubiquitin carboxyl-term 89.6 0.34 1.1E-05 34.0 3.7 33 89-121 58-90 (130)
269 2kl0_A Putative thiamin biosyn 89.5 0.69 2.3E-05 28.8 4.8 60 85-152 6-65 (73)
270 2i1j_A Moesin; FERM, coiled-co 89.4 1.6 5.4E-05 38.5 8.6 73 152-225 4-82 (575)
271 2kl0_A Putative thiamin biosyn 89.3 0.6 2.1E-05 29.0 4.4 61 161-229 6-66 (73)
272 2cu3_A Unknown function protei 89.3 0.99 3.4E-05 27.1 5.3 60 161-229 5-64 (64)
273 1f0z_A THis protein; ubiquitin 89.1 0.63 2.2E-05 28.2 4.3 57 167-229 10-66 (66)
274 3po0_A Small archaeal modifier 89.0 1.7 5.9E-05 27.8 6.7 61 163-228 18-89 (89)
275 2k5p_A THis protein, thiamine- 88.3 0.49 1.7E-05 29.9 3.5 62 161-229 6-70 (78)
276 1fm0_D Molybdopterin convertin 88.2 1.1 3.7E-05 28.1 5.2 59 164-228 18-81 (81)
277 1ip9_A BEM1 protein; ubiquitin 88.0 2.3 7.9E-05 27.1 6.4 46 75-123 11-57 (85)
278 3po0_A Small archaeal modifier 87.8 1.6 5.6E-05 27.9 6.0 60 87-151 18-88 (89)
279 1vd2_A Protein kinase C, IOTA 87.8 2.3 7.9E-05 27.5 6.5 48 77-125 7-55 (89)
280 4eut_A Serine/threonine-protei 87.0 3 0.0001 34.4 8.7 53 9-61 320-374 (396)
281 3qa8_A MGC80376 protein; kinas 86.6 0.79 2.7E-05 41.3 5.1 51 9-59 320-371 (676)
282 2kmm_A Guanosine-3',5'-BIS(dip 86.4 2.7 9.2E-05 25.6 6.2 61 1-70 1-61 (73)
283 1ef1_A Moesin; membrane, FERM 86.2 3.8 0.00013 32.5 8.5 71 77-148 2-78 (294)
284 1fm0_D Molybdopterin convertin 86.0 1.5 5E-05 27.5 4.9 58 87-150 17-79 (81)
285 2q5w_D Molybdopterin convertin 85.8 1.1 3.7E-05 27.8 4.1 59 164-229 17-77 (77)
286 2q5w_D Molybdopterin convertin 85.6 1.5 5.2E-05 27.1 4.7 56 87-148 16-73 (77)
287 3ig3_A Plxna3 protein; plexin 84.8 4.4 0.00015 35.6 8.5 65 162-226 246-336 (627)
288 3hm6_X Plexin-B1; structural g 84.6 5 0.00017 35.4 8.8 64 163-226 274-363 (644)
289 1h4r_A Merlin; FERM, neurofibr 84.5 3.9 0.00013 32.8 7.9 74 74-148 20-98 (314)
290 1wgk_A Riken cDNA 2900073H19 p 84.4 6.8 0.00023 26.5 7.8 65 87-152 30-108 (114)
291 2c7h_A RBBP6, retinoblastoma-b 84.3 3.7 0.00013 26.3 6.0 71 155-229 9-85 (86)
292 1f0z_A THis protein; ubiquitin 83.7 1.6 5.3E-05 26.3 4.0 58 85-149 6-63 (66)
293 1wgk_A Riken cDNA 2900073H19 p 83.6 2.3 7.9E-05 28.9 5.2 73 1-75 12-107 (114)
294 2cu3_A Unknown function protei 82.8 1.6 5.5E-05 26.1 3.8 59 84-150 4-62 (64)
295 1wgy_A RAP guanine nucleotide 82.7 6.3 0.00022 26.2 6.8 72 77-148 10-86 (104)
296 1rws_A Hypothetical protein PF 82.4 0.41 1.4E-05 30.1 0.9 54 166-229 24-77 (77)
297 2qjl_A URM1, ubiquitin-related 82.3 8.1 0.00028 25.2 7.9 71 1-72 2-95 (99)
298 3dwg_C 9.5 kDa culture filtrat 81.8 8 0.00027 24.8 8.1 61 166-228 20-93 (93)
299 1wgy_A RAP guanine nucleotide 81.5 7.9 0.00027 25.7 7.0 66 8-73 17-87 (104)
300 2i1j_A Moesin; FERM, coiled-co 81.0 6 0.00021 34.8 8.2 72 76-148 4-81 (575)
301 1q1o_A Cell division control p 80.8 1.9 6.3E-05 28.5 3.7 28 10-37 22-49 (98)
302 2g1e_A Hypothetical protein TA 80.7 4.7 0.00016 25.6 5.8 62 166-229 18-90 (90)
303 1rws_A Hypothetical protein PF 80.7 0.68 2.3E-05 29.0 1.5 50 90-148 24-73 (77)
304 3qij_A Protein 4.1; cytoskelet 80.4 4.1 0.00014 32.5 6.4 74 151-224 16-95 (296)
305 3ig3_A Plxna3 protein; plexin 79.9 9.3 0.00032 33.6 8.7 63 11-73 247-335 (627)
306 3hm6_X Plexin-B1; structural g 79.5 6.4 0.00022 34.7 7.6 63 11-73 274-362 (644)
307 2l52_A Methanosarcina acetivor 79.3 9.9 0.00034 24.8 7.1 69 1-72 4-95 (99)
308 1wgr_A Growth factor receptor- 77.3 4.5 0.00015 26.7 4.8 61 75-135 8-75 (100)
309 2k9x_A Tburm1, uncharacterized 77.2 1.7 5.7E-05 29.4 2.7 73 1-75 5-101 (110)
310 1j0g_A Hypothetical protein 18 77.1 11 0.00037 23.6 6.1 64 166-229 27-91 (92)
311 2k9x_A Tburm1, uncharacterized 75.8 2 6.8E-05 29.0 2.8 75 77-153 5-103 (110)
312 3u52_E Phenol hydroxylase comp 75.6 14 0.00047 25.1 6.8 61 163-223 38-108 (119)
313 3qij_A Protein 4.1; cytoskelet 75.6 4.5 0.00015 32.3 5.3 60 1-60 18-83 (296)
314 4eut_A Serine/threonine-protei 72.3 15 0.0005 30.2 8.0 52 85-136 320-373 (396)
315 3onh_A Ubiquitin-activating en 71.8 7.3 0.00025 26.9 4.8 51 172-222 19-77 (127)
316 3ge3_C Toluene-4-monooxygenase 71.8 15 0.00051 23.2 5.8 58 90-147 18-82 (84)
317 2inc_C TOUB protein; DIIRON, 4 71.6 16 0.00056 23.0 6.6 58 90-147 16-81 (83)
318 1y8x_B Ubiquitin-activating en 70.9 5.4 0.00019 26.2 3.9 60 11-70 5-82 (98)
319 1q1o_A Cell division control p 70.3 5.4 0.00018 26.2 3.8 28 86-113 22-49 (98)
320 3qa8_A MGC80376 protein; kinas 70.0 4.4 0.00015 36.4 4.4 51 161-211 320-371 (676)
321 1j0g_A Hypothetical protein 18 69.7 18 0.00061 22.7 6.6 61 90-150 27-88 (92)
322 3onh_A Ubiquitin-activating en 68.8 9.9 0.00034 26.2 4.9 51 96-147 19-78 (127)
323 2inc_C TOUB protein; DIIRON, 4 68.6 19 0.00066 22.7 7.3 60 165-224 15-82 (83)
324 3ge3_C Toluene-4-monooxygenase 68.1 20 0.00068 22.6 6.2 59 165-223 17-82 (84)
325 2kmc_A Fermitin family homolog 67.7 23 0.00079 23.2 8.7 70 2-71 21-98 (102)
326 2g1e_A Hypothetical protein TA 67.2 20 0.0007 22.4 6.5 57 14-71 18-85 (90)
327 1y8x_B Ubiquitin-activating en 65.7 11 0.00037 24.8 4.5 59 88-146 6-82 (98)
328 2c7h_A RBBP6, retinoblastoma-b 65.1 16 0.00055 23.3 5.1 67 3-73 9-81 (86)
329 3r8s_T 50S ribosomal protein L 64.8 9.8 0.00034 24.7 4.2 40 10-49 27-67 (93)
330 2dhz_A RAP guanine nucleotide 64.0 19 0.00065 24.6 5.6 70 77-146 10-90 (120)
331 1wgr_A Growth factor receptor- 63.9 16 0.00054 24.1 5.1 68 3-70 12-90 (100)
332 1pqs_A Cell division control p 63.6 7.9 0.00027 24.2 3.4 27 11-37 2-28 (77)
333 1vq8_S 50S ribosomal protein L 60.8 11 0.00037 24.1 3.8 33 10-42 22-54 (85)
334 3au4_A Myosin-X; protein-prote 60.5 25 0.00086 30.6 7.3 59 76-134 216-280 (555)
335 1v8c_A MOAD related protein; r 60.1 13 0.00045 27.0 4.6 62 166-229 17-88 (168)
336 2kmc_A Fermitin family homolog 58.1 36 0.0012 22.3 8.5 69 78-146 21-97 (102)
337 2hj1_A Hypothetical protein; s 57.4 29 0.00099 22.6 5.5 56 163-223 26-84 (97)
338 2r2q_A Gamma-aminobutyric acid 57.3 30 0.001 23.0 5.7 45 91-135 48-93 (110)
339 3r8s_T 50S ribosomal protein L 56.9 19 0.00066 23.3 4.5 38 163-200 28-66 (93)
340 2zjd_A Microtubule-associated 56.8 27 0.00091 24.2 5.5 47 165-211 55-103 (130)
341 3tve_T 50S ribosomal protein L 56.7 13 0.00045 24.1 3.7 39 10-48 21-60 (92)
342 3j21_T 50S ribosomal protein L 55.9 16 0.00054 23.3 3.9 33 10-42 23-55 (86)
343 2zjr_Q 50S ribosomal protein L 54.9 14 0.00046 24.2 3.5 37 12-48 24-61 (95)
344 2eel_A Cell death activator CI 54.9 16 0.00055 23.6 3.8 48 174-224 29-78 (91)
345 3au4_A Myosin-X; protein-prote 54.8 25 0.00085 30.6 6.3 38 1-38 217-254 (555)
346 3u52_E Phenol hydroxylase comp 54.7 47 0.0016 22.5 6.7 60 11-70 38-107 (119)
347 3h9d_A ATG8, microtubule-assoc 54.6 20 0.00068 24.4 4.5 47 165-211 50-97 (119)
348 2zjd_A Microtubule-associated 54.5 42 0.0014 23.2 6.2 58 90-147 56-118 (130)
349 2qjl_A URM1, ubiquitin-related 53.9 41 0.0014 21.6 6.8 64 164-228 21-99 (99)
350 2dhz_A RAP guanine nucleotide 51.4 26 0.0009 23.9 4.6 64 9-72 18-92 (120)
351 1n62_A Carbon monoxide dehydro 50.9 19 0.00065 26.1 4.1 28 2-30 5-32 (166)
352 3m95_A Autophagy related prote 49.4 21 0.00071 24.6 3.9 47 165-211 55-102 (125)
353 2lgx_A Fermitin family homolog 49.3 28 0.00097 23.1 4.3 67 79-146 29-100 (112)
354 1rm6_C 4-hydroxybenzoyl-COA re 49.0 30 0.001 24.8 5.0 36 1-36 1-37 (161)
355 3hk0_A Growth factor receptor- 48.6 61 0.0021 25.1 7.0 59 77-135 9-74 (256)
356 1pqs_A Cell division control p 48.4 14 0.00047 23.1 2.6 36 88-123 3-43 (77)
357 3lxf_A Ferredoxin; iron, iron- 48.1 24 0.00081 23.1 4.0 28 2-29 2-29 (104)
358 1ffv_A CUTS, iron-sulfur prote 48.0 23 0.00077 25.6 4.1 28 2-30 5-32 (163)
359 2l52_A Methanosarcina acetivor 47.9 36 0.0012 22.0 4.8 60 167-229 23-99 (99)
360 1t3q_A Quinoline 2-oxidoreduct 47.9 24 0.00081 25.5 4.3 29 1-30 10-38 (168)
361 2v1y_A Phosphatidylinositol-4, 47.9 39 0.0013 22.5 5.0 30 4-33 23-52 (108)
362 2r2q_A Gamma-aminobutyric acid 47.8 21 0.00072 23.8 3.7 47 165-211 46-93 (110)
363 1c1y_B Proto-onkogene serine/t 47.4 46 0.0016 20.7 4.9 42 155-196 4-45 (77)
364 2v1y_A Phosphatidylinositol-4, 47.3 27 0.00094 23.3 4.1 64 75-138 18-95 (108)
365 3tve_T 50S ribosomal protein L 46.9 24 0.00083 22.8 3.7 38 163-200 22-60 (92)
366 2hj1_A Hypothetical protein; s 46.7 57 0.002 21.2 6.7 56 11-71 26-84 (97)
367 1wxm_A A-RAF proto-oncogene se 46.2 50 0.0017 21.0 5.0 43 154-196 9-51 (86)
368 3hrd_D Nicotinate dehydrogenas 46.0 23 0.00079 25.4 3.9 28 1-29 4-31 (160)
369 1f2r_I Inhibitor of caspase-ac 45.3 26 0.00087 23.1 3.6 48 173-223 37-88 (100)
370 1vq8_S 50S ribosomal protein L 44.9 22 0.00074 22.6 3.2 35 162-196 22-56 (85)
371 3pvl_A Myosin VIIA isoform 1; 44.8 32 0.0011 30.7 5.5 39 1-39 264-302 (655)
372 2eel_A Cell death activator CI 44.1 48 0.0016 21.4 4.8 39 97-135 28-68 (91)
373 3rui_B Autophagy-related prote 43.9 72 0.0025 21.5 6.2 46 90-135 50-96 (118)
374 4gdk_A Ubiquitin-like protein 42.0 66 0.0023 20.6 5.5 45 90-134 23-69 (91)
375 3rui_B Autophagy-related prote 41.9 68 0.0023 21.7 5.6 47 165-211 49-96 (118)
376 3h9d_A ATG8, microtubule-assoc 41.7 44 0.0015 22.7 4.6 45 91-135 52-97 (119)
377 3tca_A Amyloid beta A4 precurs 41.4 61 0.0021 25.0 6.2 39 3-41 37-75 (291)
378 3pvl_A Myosin VIIA isoform 1; 41.4 57 0.002 29.1 6.5 47 75-121 262-309 (655)
379 2bt6_A Adrenodoxin 1; rutheniu 41.3 32 0.0011 22.5 3.8 28 2-29 8-35 (108)
380 4gmv_A RAS-associated and plec 41.0 42 0.0014 26.5 5.0 59 77-135 32-97 (281)
381 2lgx_A Fermitin family homolog 40.7 17 0.00057 24.2 2.2 68 2-70 28-100 (112)
382 3m95_A Autophagy related prote 40.6 39 0.0013 23.2 4.2 43 15-57 57-100 (125)
383 2cu1_A Mitogen-activated prote 40.1 77 0.0026 20.8 5.9 43 2-47 8-51 (103)
384 2zjr_Q 50S ribosomal protein L 39.3 34 0.0012 22.2 3.5 37 88-124 24-61 (95)
385 3j21_T 50S ribosomal protein L 38.7 32 0.0011 21.9 3.3 35 162-196 23-57 (86)
386 1eo6_A GATE-16, golgi-associat 38.5 88 0.003 21.0 6.3 57 91-147 49-109 (117)
387 4gmv_A RAS-associated and plec 38.0 73 0.0025 25.1 6.0 68 3-70 34-112 (281)
388 2l05_A Serine/threonine-protei 37.6 69 0.0024 20.7 4.7 43 154-196 19-61 (95)
389 3hvz_A Uncharacterized protein 37.2 45 0.0015 20.7 3.8 60 2-70 7-66 (78)
390 2zkr_s 60S ribosomal protein L 36.7 37 0.0013 24.3 3.7 33 10-42 93-125 (156)
391 3e19_A FEOA; transcriptional r 36.3 47 0.0016 20.1 3.8 29 130-159 29-57 (77)
392 3tca_A Amyloid beta A4 precurs 36.2 72 0.0024 24.6 5.8 40 77-116 35-74 (291)
393 2y5c_A Adrenodoxin-like protei 35.7 44 0.0015 21.9 3.8 28 2-29 7-34 (109)
394 1eo6_A GATE-16, golgi-associat 35.3 34 0.0012 23.1 3.2 60 165-224 47-110 (117)
395 2wlb_A ETP1-FD, electron trans 35.1 57 0.0019 21.0 4.3 28 2-29 5-32 (103)
396 3u5e_X 60S ribosomal protein L 34.4 42 0.0014 23.5 3.6 32 11-42 80-111 (142)
397 1c1y_B Proto-onkogene serine/t 34.2 84 0.0029 19.5 4.7 42 3-44 4-45 (77)
398 4a17_R RPL23A, 60S ribosomal p 33.8 44 0.0015 23.7 3.7 33 10-42 87-119 (150)
399 3cjl_A Domain of unknown funct 33.6 50 0.0017 21.1 3.6 39 1-39 6-46 (88)
400 1uwm_A Ferredoxin VI, FDVI; el 32.8 62 0.0021 20.9 4.2 28 2-29 2-29 (106)
401 1uiz_A MIF, macrophage migrati 32.7 93 0.0032 20.3 5.2 86 19-123 16-101 (115)
402 3chb_D Cholera toxin; toxin/re 32.6 47 0.0016 20.8 3.2 31 3-33 39-69 (104)
403 1xlq_A Putidaredoxin, PDX; [2F 32.5 57 0.0019 21.1 4.0 28 2-29 2-29 (106)
404 2k5l_A FEOA; structure, NESG, 32.5 63 0.0022 19.8 4.0 29 130-158 26-54 (81)
405 2lx9_A Ferrous iron transport 32.4 34 0.0012 21.4 2.7 24 206-229 24-47 (83)
406 4dxa_B KREV interaction trappe 31.3 61 0.0021 25.8 4.7 35 1-39 6-42 (322)
407 4gdk_A Ubiquitin-like protein 31.2 73 0.0025 20.4 4.2 34 14-47 23-57 (91)
408 3hui_A Ferredoxin; cytochrome 31.2 67 0.0023 21.8 4.2 28 2-29 23-50 (126)
409 3w1s_C Ubiquitin-like protein 30.8 1.1E+02 0.0036 19.6 5.7 57 165-223 25-84 (91)
410 1awd_A Ferredoxin; electron tr 29.8 57 0.0019 20.6 3.5 28 1-29 1-28 (94)
411 2k4y_A FEOA-like protein; GFT 29.1 72 0.0025 19.9 3.9 30 130-159 29-58 (86)
412 2h3j_A Hypothetical protein PA 28.0 31 0.0011 20.7 1.9 21 206-226 25-45 (75)
413 3bbo_V Ribosomal protein L23; 28.0 32 0.0011 25.4 2.1 38 10-47 131-169 (198)
414 3iz5_X 60S ribosomal protein L 27.8 47 0.0016 23.6 3.0 33 10-42 89-121 (152)
415 1frr_A Ferredoxin I; electron 27.3 68 0.0023 20.1 3.6 27 2-29 3-29 (95)
416 3hk0_A Growth factor receptor- 27.0 1.1E+02 0.0038 23.6 5.3 54 3-56 11-71 (256)
417 1rrb_A RAF-1 RBD, RAF proto-on 26.6 1.4E+02 0.0048 19.7 5.0 42 155-196 21-62 (107)
418 2lte_A Specialized acyl carrie 32.1 14 0.00048 24.2 0.0 73 22-110 27-99 (103)
419 1hmj_A RPB5, protein (subunit 26.0 47 0.0016 20.7 2.4 42 179-225 20-61 (78)
420 3ny5_A Serine/threonine-protei 25.4 1.4E+02 0.0048 19.3 5.3 44 155-198 16-59 (96)
421 1wxm_A A-RAF proto-oncogene se 24.9 1.4E+02 0.0047 18.9 5.3 43 78-120 9-51 (86)
422 3mhx_A Putative ferrous iron t 24.3 43 0.0015 20.8 2.1 21 206-226 29-49 (85)
423 1wfy_A Regulator of G-protein 24.1 1.6E+02 0.0054 19.4 5.5 52 84-135 25-78 (104)
424 1jq4_A Methane monooxygenase c 23.4 90 0.0031 19.7 3.6 28 2-29 6-33 (98)
425 2nvu_B Maltose binding protein 23.0 1.2E+02 0.0042 27.5 5.6 59 164-222 713-789 (805)
426 1eik_A RNA polymerase subunit 23.0 59 0.002 20.2 2.4 42 179-225 22-63 (77)
427 1ibx_B Chimera of IGG binding 22.9 80 0.0027 22.2 3.3 39 97-135 82-124 (145)
428 2j58_A WZA, outer membrane lip 22.8 3.1E+02 0.01 22.2 14.5 113 65-182 139-265 (359)
429 2zkr_s 60S ribosomal protein L 22.8 69 0.0024 22.8 3.1 34 163-196 94-127 (156)
430 4dxa_B KREV interaction trappe 22.7 87 0.003 24.9 4.1 45 75-123 4-53 (322)
431 2gcx_A FEOA, ferrous iron tran 22.4 71 0.0024 19.1 2.8 30 130-159 24-53 (75)
432 2qwv_A UPF0217 protein VC_A105 22.4 2E+02 0.0068 21.5 5.6 53 135-187 50-103 (208)
433 1ltr_D ETB-R2, heat-labIle ent 22.2 63 0.0022 20.5 2.5 31 3-33 38-68 (113)
434 2eki_A DRG 1, developmentally- 21.9 1E+02 0.0034 19.9 3.5 58 166-224 28-87 (93)
435 1wri_A Ferredoxin II, ferredox 21.8 1E+02 0.0035 19.3 3.6 28 2-30 3-30 (93)
436 1iue_A Ferredoxin; electron tr 21.8 1.2E+02 0.004 19.2 3.9 26 3-29 5-30 (98)
437 2xcz_A Possible ATLS1-like lig 21.7 77 0.0026 20.7 3.1 81 23-123 20-101 (115)
438 1hfo_A Migration inhibitory fa 21.6 1.7E+02 0.0058 18.8 5.1 83 22-123 18-100 (113)
439 3u5e_X 60S ribosomal protein L 21.2 81 0.0028 22.1 3.1 34 163-196 80-113 (142)
440 1b9r_A Protein (terpredoxin); 20.8 53 0.0018 21.2 2.1 28 2-29 2-29 (105)
441 2k5f_A Ferrous iron transport 20.7 1.3E+02 0.0044 19.6 4.0 30 130-159 25-54 (105)
442 2al6_A Focal adhesion kinase 1 20.5 68 0.0023 26.2 3.1 54 81-134 12-76 (375)
443 4a17_R RPL23A, 60S ribosomal p 20.2 91 0.0031 22.1 3.2 35 162-196 87-121 (150)
444 1a70_A Ferredoxin; iron-sulfur 20.1 1.3E+02 0.0046 18.9 3.9 26 3-29 5-30 (97)
445 2nnz_A Hypothetical protein; b 20.1 55 0.0019 23.2 2.1 29 1-30 30-61 (153)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=3.5e-39 Score=242.10 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-e-cCccccCCccccccccccCCeEEEEEE-ecCCe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~-~g~~l~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 77 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++++.++ +++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
+|+|++.+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++.||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.2e-38 Score=237.76 Aligned_cols=153 Identities=35% Similarity=0.519 Sum_probs=147.1
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-e-cCcccCCCcchhhcccccCCceEEEEE-eecce
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 153 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 153 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++.+ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++|||
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=241.71 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++|.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=237.26 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.++|+..+|+++.+++++++||++||++|+..+|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|++|++||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=4.1e-37 Score=229.19 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..+.|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.++.||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=4.2e-36 Score=223.72 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++++++.+..+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.8e-22 Score=139.21 Aligned_cols=101 Identities=74% Similarity=0.991 Sum_probs=94.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
.+|+|+.++|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..++.+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EE---ccCCcEEeeccCccCcHHH
Q 026933 81 VK---TLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 81 v~---~~~g~~~~~~v~~~~tV~~ 101 (230)
++ ...|+++.+++.+++||++
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4568889999999888763
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=124.00 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998764
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=1.9e-20 Score=124.52 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|++..|+++++++.|++||++||++|+++.|+|+++|+|.|+|+.|+|+.||++|+|.++++++|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=2e-20 Score=124.49 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc-ccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~-l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+++.|++++++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||.+++++++.++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.82 E-value=2.7e-20 Score=125.17 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=72.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998876653
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.82 E-value=5.9e-20 Score=126.11 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888898
Q ss_pred EEccCCcEEee
Q 026933 81 VKTLTGKTITL 91 (230)
Q Consensus 81 v~~~~g~~~~~ 91 (230)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88887755433
No 13
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.1e-21 Score=135.80 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=96.6
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+.++|+++..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.++.+|.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEe---eecCceEEEEeeccccHHH
Q 026933 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (230)
Q Consensus 154 ~i~v~---~~~~~~~~~~v~~~~tV~~ 177 (230)
.++++ ...|+++++++.+.+||.+
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 88887 4468889999999888864
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=123.50 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.5
Q ss_pred ccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhccccc
Q 026933 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~ 139 (230)
|..+++.+++.+..+..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 455678889988888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCceEEEEE
Q 026933 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999864
No 15
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.9e-20 Score=122.48 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.0
Q ss_pred CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~~ 74 (230)
|+|+||++.|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999998766 999999999999 9999999999999999999999999999999 7999999998763
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=118.50 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.3
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~ 227 (230)
+.|.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999886
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=2e-19 Score=117.56 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=71.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 18
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.5e-19 Score=120.25 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=70.6
Q ss_pred EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
....+.|+|+|++..|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|++..
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999863
No 19
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.5e-19 Score=121.55 Aligned_cols=77 Identities=57% Similarity=0.968 Sum_probs=71.9
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999996
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=120.59 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.7
Q ss_pred ccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCC
Q 026933 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~ 215 (230)
|..+++.++++++.+..|.++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788888998888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEE
Q 026933 216 ESTLHLVLR 224 (230)
Q Consensus 216 g~~i~l~~~ 224 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999875
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.3e-19 Score=118.00 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++ +++ +++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999998875
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.79 E-value=3.8e-19 Score=116.21 Aligned_cols=75 Identities=95% Similarity=1.308 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=2e-19 Score=121.74 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=70.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998764
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.3e-19 Score=123.01 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+++.|+++.++|.|++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 25
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.8e-19 Score=120.21 Aligned_cols=75 Identities=87% Similarity=1.259 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887654
No 26
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=2.7e-19 Score=120.88 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++..+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999987643
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=120.73 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+..+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999887644
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.79 E-value=2e-19 Score=121.01 Aligned_cols=75 Identities=57% Similarity=0.958 Sum_probs=72.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887643
No 29
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=122.44 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.3e-19 Score=119.17 Aligned_cols=75 Identities=80% Similarity=1.153 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++++++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988754
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.79 E-value=4.7e-19 Score=121.17 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeee
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988776543
No 32
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=3.6e-19 Score=119.70 Aligned_cols=80 Identities=85% Similarity=1.267 Sum_probs=70.0
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.||+++++...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999963
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=3.8e-19 Score=117.21 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.++|++++||.+||.+|++..|+|+++|+|+|+|+.|+|+.||++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 34
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.8e-19 Score=117.60 Aligned_cols=75 Identities=92% Similarity=1.241 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987654
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.4e-19 Score=118.28 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=72.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887544
No 36
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.78 E-value=6.3e-19 Score=120.98 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.2
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.+..+|.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCceEEE
Q 026933 157 VKTLTGKTITL 167 (230)
Q Consensus 157 v~~~~~~~~~~ 167 (230)
.+..+++.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88877655433
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=7.8e-19 Score=117.31 Aligned_cols=78 Identities=79% Similarity=1.159 Sum_probs=72.0
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+..+++++.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 367889998999999999999999999999999999999999999999999999999999999999999999999885
No 38
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=1e-18 Score=114.20 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=71.5
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5688998889999999999999999999999999999999999999999999999999999999999999999987
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=1e-18 Score=119.46 Aligned_cols=78 Identities=94% Similarity=1.273 Sum_probs=73.3
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999986
No 40
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.77 E-value=6.5e-19 Score=118.51 Aligned_cols=78 Identities=58% Similarity=0.980 Sum_probs=75.0
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999999998
No 41
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=115.65 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 42
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.3e-18 Score=117.36 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.1
Q ss_pred CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++.+| +++.+ +|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7999999999 79999 5999999999999999999999999999999999999999999999999999999887544
No 43
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2e-18 Score=117.66 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+.++|++++||.+||.+|+.. .|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998764
No 44
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=9.3e-19 Score=118.90 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=71.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++| +++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+ .+|++|||.+++++++.+++.++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999887543
No 45
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.4e-19 Score=122.80 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998653
No 46
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=1.6e-18 Score=115.80 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999987653
No 47
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=1.1e-18 Score=118.91 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.2
Q ss_pred CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||++.|++|++ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 9999999999999999999999999999999 999999998754
No 48
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.77 E-value=1.4e-18 Score=121.78 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999988654
No 49
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.77 E-value=1.9e-18 Score=112.90 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++..|+.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5688998889999999999999999999999999999999999999999999999999999999999999999987
No 50
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.77 E-value=1.1e-18 Score=121.09 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=71.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccccc-------CCeEEEEEE
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~-------~~~i~l~~~ 72 (230)
|.||++...++ ++++++.+++||.+||++|+...|||+++|||+|+|+.|+|++||++|||.. ++++||.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999888 8899999999999999999999999999999999999999999999999999 999999988
Q ss_pred ec
Q 026933 73 LR 74 (230)
Q Consensus 73 ~~ 74 (230)
..
T Consensus 81 ~~ 82 (118)
T 4ajy_B 81 AD 82 (118)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.77 E-value=1.9e-18 Score=129.73 Aligned_cols=124 Identities=65% Similarity=0.873 Sum_probs=93.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++..++.+-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred EEcc-CC--cEEeeccCccCcHHHHHHHHhhHhCCC-CCCeEEEecCcccCC
Q 026933 81 VKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED 128 (230)
Q Consensus 81 v~~~-~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d 128 (230)
|+.. .| ..-.+.+.++.++.+-... ..+. .+..++.|.-+.|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~----~~i~~~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETS----IKLEMDQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGC----BEEEESSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccc----eEEecCCcceEEEhHHHHHH
Confidence 5543 12 2345555555544221111 1111 133466676666654
No 52
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.3e-18 Score=115.65 Aligned_cols=75 Identities=32% Similarity=0.456 Sum_probs=71.4
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc-cCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+. |+|+.+|++|+|.+|++|++++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 468999999999999999999999999999999999999999999999999 999999999999999999998753
No 53
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=119.57 Aligned_cols=78 Identities=95% Similarity=1.288 Sum_probs=74.6
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 347889999999999999999999999999999999999999999999999999999999999999999999999998
No 54
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=117.47 Aligned_cols=79 Identities=35% Similarity=0.564 Sum_probs=71.3
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+...|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++..++.||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4578999998899999999999999999999999999999999999999999999999999999999999999999885
No 55
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.9e-18 Score=115.39 Aligned_cols=78 Identities=91% Similarity=1.244 Sum_probs=74.2
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+...|+++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999885
No 56
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.76 E-value=1.2e-18 Score=119.24 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=72.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.++|.+++||.+||.+|++..|||+++|+|+|+|+.|+|+.||++|+|.++++|++.++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 57
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.76 E-value=1.4e-18 Score=114.52 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
|.++|+...|+++.+++++++||.+||++++++.|+|++.|+|+|+|+.|+|++||++|+|++|++|++.++++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999987
No 58
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.7e-18 Score=115.24 Aligned_cols=79 Identities=34% Similarity=0.534 Sum_probs=75.6
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|.++|+...++++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4588999998899999999999999999999999999999999999999999999999999999999999999999985
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.62 E-value=4.5e-20 Score=120.79 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987653
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.5e-18 Score=116.76 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=73.9
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..+.++|+...+ ++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|++|++||+
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 457889998777 899999999999999999999999999999999999999999 999999999999999999999997
No 61
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=117.46 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999998 899999999999999999999999999999999999999999999999999999999999987654
No 62
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.76 E-value=3e-18 Score=112.27 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999997653
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.76 E-value=1.6e-18 Score=120.92 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=68.7
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccc-------cCCeEEEEEE
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|+++|+...|+ +++++|.+++||.+||++|++.+|||+++|+|+|+|+.|+|+.||++|||. .++++||.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 599999999999999999999999999999999999999999999999999 7899999887
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.76 E-value=9e-19 Score=132.90 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=78.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred EE
Q 026933 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 64
No 65
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=120.63 Aligned_cols=92 Identities=80% Similarity=1.052 Sum_probs=80.3
Q ss_pred cccCCceEEEEEe--------ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcc
Q 026933 137 IQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 137 i~~~~~i~l~~~~--------~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L 208 (230)
+.+|+++++.... ...|.++|+...|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 91 (111)
T 2ojr_A 12 WIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 91 (111)
T ss_dssp SCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT
T ss_pred eecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH
Confidence 4455555554332 23588999988899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEecCC
Q 026933 209 ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 209 ~~~~i~~g~~i~l~~~~~~g 228 (230)
++|+|++|++|++.+|++||
T Consensus 92 ~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 92 SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTCCTTCEEEEEECCCC-
T ss_pred HHcCCCCCCEEEEEEeCCCC
Confidence 99999999999999999987
No 66
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6.6e-18 Score=113.80 Aligned_cols=80 Identities=36% Similarity=0.606 Sum_probs=75.0
Q ss_pred cceeEEEeeecC-ceEEE-EeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~-~~~~~-~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
..|.++|+...| +++.+ ++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 457889999888 69999 5999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 026933 229 GF 230 (230)
Q Consensus 229 ~~ 230 (230)
.+
T Consensus 86 ~~ 87 (89)
T 1wy8_A 86 PS 87 (89)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 67
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=3.1e-18 Score=117.11 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=75.4
Q ss_pred ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...|.++|+...|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|++||++|+|++|++|+++++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3447899999999999999999999999999999999999999999999999999999999999999999999999987
No 68
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=3.2e-18 Score=115.77 Aligned_cols=76 Identities=91% Similarity=1.259 Sum_probs=72.5
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999998765
No 69
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.5e-18 Score=112.27 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=70.6
Q ss_pred CCeeeEEEccCCcEE-eec-cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
+.|+|+|+..+|+.+ .++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468999999999885 899 999999999999999999999999999999999999999999999999999998875
No 70
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.74 E-value=3.7e-18 Score=115.30 Aligned_cols=78 Identities=32% Similarity=0.551 Sum_probs=72.6
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|+|+|+..+|+.+.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+| +|++|+++.+++++.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 568999999999999999999999999999999999999999999999999999999999999 899999998876543
No 71
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=6.7e-18 Score=118.24 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=73.6
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999987
No 72
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-18 Score=113.74 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=69.0
Q ss_pred eeeEEEccCCcEEeeccC--ccCcHHHHHHHH-hhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~~ 150 (230)
|+|+|++.+|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 789999999999988855 999999999999 9999999999999999999999999999999 7999999987653
No 73
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=115.92 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=71.3
Q ss_pred ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...|.++|+. |+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3457888887 7899999999999999999999999999999999999999999999999999999999999999987
No 74
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=4e-18 Score=115.62 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=68.6
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.|+|+|+++.|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999886
No 75
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=5.2e-18 Score=117.91 Aligned_cols=73 Identities=29% Similarity=0.536 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 76
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=6e-18 Score=114.88 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=69.9
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceeEEecCccccCCcccccc--ccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gip~~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+ ++.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|.+++++||++++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999998 67777889999999999999999 9999999999999999999999999 999999999988764
Q ss_pred C
Q 026933 75 G 75 (230)
Q Consensus 75 ~ 75 (230)
+
T Consensus 88 g 88 (93)
T 1wgd_A 88 S 88 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=2.1e-18 Score=118.46 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceeEEecCcccc-CCccccccccccC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~---------------~q~l~~~g~~l~-d~~~l~~~~i~~~ 64 (230)
|+|+|++++|++++++|.+++||.+||++|++..++|+. +|+|.|+|+.|. |+.+|++|||.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6799999999999
Q ss_pred CeEEEEEEecCC
Q 026933 65 STLHLVLRLRGG 76 (230)
Q Consensus 65 ~~i~l~~~~~~~ 76 (230)
+++|++.+..+.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999877543
No 78
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.73 E-value=6.4e-18 Score=126.87 Aligned_cols=83 Identities=90% Similarity=1.200 Sum_probs=75.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|++.+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++.+|..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999886555
Q ss_pred Eee
Q 026933 157 VKT 159 (230)
Q Consensus 157 v~~ 159 (230)
++.
T Consensus 81 vkf 83 (169)
T 3l0w_B 81 IKF 83 (169)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 79
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=116.60 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987653
No 80
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.7e-18 Score=115.41 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999886 799999999999999999999999999999999999999999999999999999999987654
No 81
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=110.21 Aligned_cols=75 Identities=40% Similarity=0.703 Sum_probs=71.2
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998764
No 82
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=114.56 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 89999999999999999999999999999999999999999999999999999999999988764
No 83
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=1.2e-17 Score=116.47 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=69.8
Q ss_pred eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026933 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~-------~g~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||++||++|+.+.|+|++.|+|+|+|+.|+|+++|++|||+ ++++|+|.+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34566666665 699999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCC
Q 026933 225 LRGGGF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
.||+|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 77765
No 84
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=1.9e-17 Score=114.96 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=69.8
Q ss_pred eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026933 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~-------g~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|++||++|||++ +++|+|.+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 34666766655 7899999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 026933 225 LRGGGF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
. +|+|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6665
No 85
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.9e-18 Score=117.35 Aligned_cols=92 Identities=32% Similarity=0.524 Sum_probs=67.2
Q ss_pred ccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchh
Q 026933 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~ 133 (230)
...++|.|.. +..+.......+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 4577888874 444444555567888886 8899999999999999999999999999999999999999999999999
Q ss_pred hcccccCCceEEEEE
Q 026933 134 DYNIQKESTLHLVLR 148 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~ 148 (230)
+|||++|++|+++.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999988754
No 86
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=112.90 Aligned_cols=80 Identities=29% Similarity=0.469 Sum_probs=73.0
Q ss_pred cceeEEEeeecCc--eEEEEeeccccHHHHHHHhchhc--CCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEEEE
Q 026933 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~--gi~~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~l~~~ 224 (230)
..|.++|+...++ ++.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|++|++|+|+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3477888888887 56777779999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ecCCCC
Q 026933 225 LRGGGF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
++||+.
T Consensus 86 ~~gg~~ 91 (93)
T 1wgd_A 86 VKSGPS 91 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999874
No 87
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.72 E-value=2.4e-17 Score=110.05 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=70.8
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhH---hCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
+..|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357899999999999999999999999999999998 78999999999999999999999999999999999987654
No 88
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.1e-17 Score=112.07 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=63.6
Q ss_pred eEEEccC----CcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 79 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 79 v~v~~~~----g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
+.|+..+ ++.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++| +++++++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 4444444 6789999999999999999999999999999999999999999999999999999999 5555543
No 89
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=6.8e-18 Score=115.35 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999877643
No 90
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.4e-17 Score=111.77 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=66.5
Q ss_pred EEEeeec----CceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 155 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 155 i~v~~~~----~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|+..+ ++.+++++++++||.+||++|+++.|+|++.|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 4444444 6789999999999999999999999999999999999999999999999999999999 777777654
No 91
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.71 E-value=1.6e-17 Score=113.06 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=69.9
Q ss_pred cCCeeeEEEccCCcEEee--ccCccCcHHHHHHHH-hhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEEe
Q 026933 74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 149 (230)
...|+|+|++.+|+.+.+ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 457999999999998777 566999999999999 8888999999999999999999999999999 999999999765
Q ss_pred e
Q 026933 150 R 150 (230)
Q Consensus 150 ~ 150 (230)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 92
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.4e-17 Score=111.55 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.3
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhH---hCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 789999999999999999999999999999999 78999999999999999999999999999999999988654
No 93
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.71 E-value=2.9e-17 Score=112.23 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.1
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEe
Q 026933 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+|+...+ .+++++|.|++||++||++|++.+||||++|||++.|+.++|+.||++||| .+++++||.+..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 599999998743
No 94
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.71 E-value=1.6e-17 Score=116.46 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=71.6
Q ss_pred CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|+++ +|+++.++|++ ++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 89999999998 999999999999999999999999999999999999999999999999999876543
No 95
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=115.60 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=70.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987543
No 96
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.71 E-value=6.9e-19 Score=126.49 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999876543
No 97
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=4e-17 Score=114.14 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceeEEecCccccCCccccccccccC--CeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--p~~~q~l~~~g~~l~d~~~l~~~~i~~~--~~i~l~ 70 (230)
|+|+|+++.|++++++|.+++||.+||++|++ ..|+ |+++|+|+|.|+.|+|+.+|++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 5675 6999999999999999999999999765 578888
Q ss_pred EEec
Q 026933 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7764
No 98
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.8e-17 Score=116.58 Aligned_cols=74 Identities=31% Similarity=0.405 Sum_probs=69.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 78999999 999999999999999999999999999999999999999999999999999999999999887643
No 99
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.5e-17 Score=115.40 Aligned_cols=80 Identities=33% Similarity=0.455 Sum_probs=75.3
Q ss_pred ecceeEEEeee---cCceEEEEeec-cccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~---~~~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
++.+.++|+.. .|+.+.+++++ ++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|.+|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 45678888887 78899999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026933 226 RGGG 229 (230)
Q Consensus 226 ~~g~ 229 (230)
+||.
T Consensus 105 ~GGk 108 (111)
T 1we6_A 105 RSGP 108 (111)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9985
No 100
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.70 E-value=1.4e-17 Score=126.41 Aligned_cols=84 Identities=90% Similarity=1.211 Sum_probs=80.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeeccee
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
-.|+|+|++.+|+++.++|++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++.+|..
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEe
Q 026933 155 IFVK 158 (230)
Q Consensus 155 i~v~ 158 (230)
++++
T Consensus 184 ~fvk 187 (189)
T 3q3f_A 184 TFTK 187 (189)
T ss_dssp CCCC
T ss_pred ceEe
Confidence 7665
No 101
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.9e-17 Score=113.53 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999886 799999999999999999999999999999999999999999999999999999999987643
No 102
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.53 E-value=1.1e-18 Score=114.02 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=71.7
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 689999999999999999999999999999999999999999999999999999999999999999999988764
No 103
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=6e-17 Score=105.98 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.8
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
|+|+|+. +|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7899998 8999999999999999999999999999999999999999999999999999999999998754
No 104
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.9e-17 Score=113.34 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=68.7
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++..| ++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++++..+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7999999999999999999999999999999999999999988 799999999999999987654
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.69 E-value=1.6e-18 Score=127.34 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988754
No 106
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=8.9e-17 Score=113.34 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=68.7
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceeEEecCccccCCccccccccccC------Ce
Q 026933 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gip~--~~q~l~~~g~~l~d~~~l~~~~i~~~------~~ 66 (230)
|+|+|++++|+.+ ++++++++||.+||++| ++..|+|+ ++|+|+|+|+.|+|+.||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 67789997 79999999999999999999999988 67
Q ss_pred EEEEEEecC
Q 026933 67 LHLVLRLRG 75 (230)
Q Consensus 67 i~l~~~~~~ 75 (230)
+|+++++.+
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 888888754
No 107
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.69 E-value=1.1e-16 Score=112.72 Aligned_cols=69 Identities=29% Similarity=0.603 Sum_probs=66.7
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|+++.+++++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999996
No 108
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=114.27 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=67.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceeEEecCccccCCccccccccccCC--eEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gip--~~~q~l~~~g~~l~d~~~l~~~~i~~~~--~i~l~ 70 (230)
|.|+|+++.|++++++|.+++||++||++|++ ..|+| +++|+|+|+|+.|+|+.||++|+|..++ ++|++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 77885 8999999999999999999999999666 67888
Q ss_pred EEec
Q 026933 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7764
No 109
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-17 Score=114.07 Aligned_cols=93 Identities=31% Similarity=0.514 Sum_probs=66.7
Q ss_pred CcchhhcccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcc
Q 026933 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 129 ~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L 208 (230)
..++++|.|.. +.++..+....+.+.|+. .|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 34678888754 444544444456677776 888999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEE
Q 026933 209 ADYNIQKESTLHLVLR 224 (230)
Q Consensus 209 ~~~~i~~g~~i~l~~~ 224 (230)
++|||++|++|+|+.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998764
No 110
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=2.7e-17 Score=112.98 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=70.9
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC---------------CCeEEEecCcccC-CCcchhhccccc
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---------------~~q~L~~~g~~L~-d~~~l~~~~i~~ 139 (230)
.|+|+|+..+|+.++++|++++||++||++|+++.++|+ +.|+|+|+|+.|. |+.+|++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 499999999999999999999999999999999999887 4579999999996 679999999999
Q ss_pred CCceEEEEEeecc
Q 026933 140 ESTLHLVLRLRGG 152 (230)
Q Consensus 140 ~~~i~l~~~~~~~ 152 (230)
|++|+++.++.+.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999887654
No 111
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=110.05 Aligned_cols=80 Identities=30% Similarity=0.367 Sum_probs=72.2
Q ss_pred EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
+.....|+|+|+.. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+++
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 33456799999988 88899999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 026933 151 G 151 (230)
Q Consensus 151 ~ 151 (230)
+
T Consensus 99 ~ 99 (101)
T 2klc_A 99 N 99 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=111.02 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=64.5
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceeEEecCccccCCcccccc--ccccCCeEEEE
Q 026933 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gip~-~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~ 70 (230)
|+|+||+++|+ ++++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++| +|.++++++|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 6799999999999999999996 56665 999999999999999999999 99999999873
No 113
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=109.61 Aligned_cols=78 Identities=33% Similarity=0.438 Sum_probs=72.2
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+...++ +.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.++++|-
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 4478888888776 79999999999999999999999999999999999999999999999999999999999988763
No 114
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=106.48 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
++++.++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++...
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4667889999999999999999999999999999999999999999999999999999999999988754
No 115
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.68 E-value=6.9e-17 Score=108.86 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.2
Q ss_pred CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. .|+++.+ ++++++||.+||++|++.+|||+++|+|+ |+|+.|+|+.+|++|+|.++++++|+..+
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 7999999 99999999999999999999999999999 99999999999999999999999997654
No 116
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.6e-17 Score=111.17 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=72.9
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+.. ++.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++.++.||.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 367888887 88999999999999999999999999999999999999999999999999999999999999999875
No 117
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=7.9e-17 Score=109.72 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=66.6
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+ ..|+++ .++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|+|.++++++|+...
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 689999 479999 6999999999999999999999999999999999999999 9999999999999997654
No 118
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=110.06 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=74.0
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..|.++|+...|+++.+++++++||++||++|+...|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+...++
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4478899998999999999999999999999999999999999999999999999999999999999999999876654
No 119
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.6e-16 Score=112.18 Aligned_cols=77 Identities=30% Similarity=0.373 Sum_probs=68.7
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.|.++|+.. ++.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|+.+..||.
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 467888887 88999999999999999999999999999999999999999999999999999999999999998875
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.66 E-value=6.5e-18 Score=124.11 Aligned_cols=77 Identities=97% Similarity=1.344 Sum_probs=0.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++++.|||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 46788988999999999999999999999999999999999999999999999999999999999999999999996
No 121
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.66 E-value=7.9e-18 Score=120.94 Aligned_cols=77 Identities=96% Similarity=1.296 Sum_probs=0.6
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++++.||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999985
No 122
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=109.04 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.++++.+.|++++++|++++||.+||++|++.+||||++|+|++ .+..|+|+.+|++|+|.+++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 677888999999999999999999999999999999999999985 4444999999999999999999998765
No 123
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.4e-16 Score=108.18 Aligned_cols=76 Identities=34% Similarity=0.475 Sum_probs=71.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.++|+...++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+|+.++.+|.
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 67888887775 78999999999999999999999999999999999999999999999999999999999988773
No 124
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.65 E-value=4.2e-16 Score=109.83 Aligned_cols=68 Identities=29% Similarity=0.620 Sum_probs=65.2
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++.+|
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999998876
No 125
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=4e-16 Score=109.05 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=68.6
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhh------HhCC--CCCCeEEEecCcccCCCcchhhcccccC--Cce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~~l~~~~i~~~--~~i 143 (230)
...|.|+|++..|+++.+++++++||++||++|++ +.++ |+++|+|+|.|+.|+|+.+|++|+|..+ +++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45689999999999999999999999999999999 4464 6999999999999999999999999866 567
Q ss_pred EEEEEeec
Q 026933 144 HLVLRLRG 151 (230)
Q Consensus 144 ~l~~~~~~ 151 (230)
|+++++..
T Consensus 94 hLvlr~~~ 101 (116)
T 1wgh_A 94 HLVARETL 101 (116)
T ss_dssp EEEECSSC
T ss_pred EEEccCCC
Confidence 77776543
No 126
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.8e-16 Score=109.27 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.6
Q ss_pred CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eeEEecCccccCCccccccccccCC
Q 026933 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gip~~~-q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+||..+| +.+.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 899999554 599999999999999 999999 9999999999999999999999999
Q ss_pred eEEEEEEec
Q 026933 66 TLHLVLRLR 74 (230)
Q Consensus 66 ~i~l~~~~~ 74 (230)
++|++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999987653
No 127
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=9e-16 Score=108.20 Aligned_cols=79 Identities=25% Similarity=0.420 Sum_probs=70.8
Q ss_pred cceeEEEeeecCceE-EEEeeccccHHHHHHHhc-----hhcCCCC--CceEEEECCeecCCCCcccccCCCCC------
Q 026933 151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ 216 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~~~v~~~~tV~~LK~~i~-----~~~gi~~--~~~~L~~~g~~L~d~~~L~~~~i~~g------ 216 (230)
.-+.+.++..+|+.+ ++++++++||++||++|+ ...|+|+ ++|+|+|.|+.|+|++||++|+|+.|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 347889999999888 799999999999999994 4557886 79999999999999999999999998
Q ss_pred CEEEEEEEecCCC
Q 026933 217 STLHLVLRLRGGG 229 (230)
Q Consensus 217 ~~i~l~~~~~~g~ 229 (230)
++++|++++.||+
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 7899999999875
No 128
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.7e-16 Score=106.43 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.++|++++||.+||.+|+... +++|+|+|+|+.|+|+ .+|++|+|.++++||+.++..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8899999999999999 999999999999999987653
No 129
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.8e-16 Score=107.79 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=64.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|+ ..|+++.+++++++||.+||++|+..+|||+++|+|+|+|+.|+| .+|++|+|.++++|+|+..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 678898 579999999999999999999999999999999999999999954 5999999999999998754
No 130
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.5e-16 Score=105.36 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.5
Q ss_pred CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceeEEecCccccC-CccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d-~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|.++++|++....
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899998 589999999996 99999999999999999999999999999998 568999999999999997654
No 131
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=104.73 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.5
Q ss_pred CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceeEEec--CccccCCccccccccccCCeEEE
Q 026933 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gip~~~q~l~~~--g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+++.|+.+ ++ +|+|++||.+||++|++. .|+||++|+|.|. |+.|+|+.+|++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998765 58 999999999999999994 8999999999976 89999999999999999998765
No 132
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=4e-16 Score=107.56 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=70.7
Q ss_pred ceeEEEeeecC----ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEec
Q 026933 152 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~l~~~~~ 226 (230)
.|.++|+...+ +.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|..+.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 36777777543 7899999999999999999999999999999999999999877 799999999999999999998
Q ss_pred CCC
Q 026933 227 GGG 229 (230)
Q Consensus 227 ~g~ 229 (230)
||.
T Consensus 87 gg~ 89 (102)
T 1v5o_A 87 VGL 89 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 133
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=1e-15 Score=104.55 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=66.7
Q ss_pred CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEE
Q 026933 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~ 148 (230)
.|+++|+...+ .++++++++++||++||++|++++|+|++.|||+++|+.++|+.+|.+||| .+|++++|++.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 36788887764 789999999999999999999999999999999999999999999999999 59999999864
No 134
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.3e-15 Score=102.57 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=68.5
Q ss_pred CCeeeEEEccCCcEEee-ccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 458899985 7899999 99999999999999999999999999999 99999999999999999999999887543
No 135
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=104.40 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.3
Q ss_pred CeeeEEE-ccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 76 ~~~v~v~-~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
.+.+.|+ ..+++.+.++++++.||++||+.++...++|++.|+|+|+|+.|.|+.||.+|||++|.+|||+.+...+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 3566666 6678899999999999999999999999999999999999999999999999999999999999886544
No 136
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=103.32 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=61.8
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC--c---c-ccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--K---Q-LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g--~---~-l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+.|+|+...+ +.+++++.+++||.+||++|+..+||||++|+|+|.| + . ++|+.+|++|||.++++|++.
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 3577877655 4899999999999999999999999999999999973 3 3 488999999999999999985
No 137
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=105.89 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=64.4
Q ss_pred CCeeeEEEccCCc--EEeeccCccCcHHHHHHHHhhHh-CCC-CCCeEEEecCcccCCCcchhhc--ccccCCceEEE
Q 026933 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~-~i~-~~~q~L~~~g~~L~d~~~l~~~--~i~~~~~i~l~ 146 (230)
..|+|+|++.+++ .+.+++++++||++||++|+++. |+| +++|+|+|+|+.|+|+.+|++| +|.++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5689999999887 67889999999999999999974 555 5999999999999999999999 99999999874
No 138
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=105.33 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=69.6
Q ss_pred EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCee
Q 026933 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (230)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~ 78 (230)
.|.|+ ..+|..++++++++.||.+||.++...+++|+++|+|.|+|+.|.|+.||.+|||.++.++||.++..+.-.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 35555 557889999999999999999999999999999999999999999999999999999999999988755433
No 139
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.61 E-value=1.5e-15 Score=100.93 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.3
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-------cCccccCCccccccccccCCeEEEEEE
Q 026933 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-------~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|.|.. .+++.+...+++++||.+||++|+..+||||++|+|.| .|+.++|+.+|++|||.++++||++-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 355543 35567889999999999999999999999999999996 478899999999999999999999753
No 140
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.61 E-value=2.9e-15 Score=99.68 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.8
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
.+++...|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455668899999999999999999999999999999999999999999999999999999999998754
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.4e-15 Score=104.49 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=69.1
Q ss_pred CCeeeEEEccCC---cEEeeccCc---------cCcHHHHHHHHhhHh--CCCCCC-eEEEecCcccCCCcchhhccccc
Q 026933 75 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g---~~~~~~v~~---------~~tV~~lK~~i~~~~--~i~~~~-q~L~~~g~~L~d~~~l~~~~i~~ 139 (230)
..|+|+|+..++ +.+.+++++ ++||++||++|++.. ++|+++ |+|+|+|+.|+|+.+|++|+|.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458899999888 788899554 499999999999999 999999 99999999999999999999999
Q ss_pred CCceEEEEEee
Q 026933 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
+++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999987654
No 142
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=107.08 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=69.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhch------hcCC--CCCceEEEECCeecCCCCcccccCCCCCC--EEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~------~~gi--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~--~i~l~ 222 (230)
|.++++...|+++++++++++||++||++|++ +.|+ ++++|+|+|.|+.|+|+++|++|+|+.|+ +++|+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67888888899999999999999999999999 5577 48999999999999999999999999777 68888
Q ss_pred EEecCCC
Q 026933 223 LRLRGGG 229 (230)
Q Consensus 223 ~~~~~g~ 229 (230)
+|+.+++
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 8887654
No 143
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.60 E-value=5.9e-17 Score=122.08 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|+.|+|+.+|+ ++++|||++++.++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 88999999887544
No 144
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.59 E-value=2.8e-15 Score=121.59 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 145
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=3.1e-15 Score=101.85 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=68.9
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCC-cchhhcccccCCceEEEEEeec
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
..|+|+|+..+|+.+.+++++++||++||++|++.. +++|+|+|+|+.|+|+ .+|++|+|.+|++|+++.+.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 468999999999999999999999999999999998 8899999999999999 9999999999999999887543
No 146
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=6.4e-15 Score=99.65 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=67.1
Q ss_pred CCeeeEEEccCCcEEeeccCcc-----CcHHHHHHHHhhHhCCCCCCeEEEecCcccCC-CcchhhcccccCCceEEEEE
Q 026933 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~ 148 (230)
..|+|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|.+|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 358899987 578899999985 99999999999999999999999999999988 66899999999999998765
Q ss_pred ee
Q 026933 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 147
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=6e-15 Score=100.15 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc---c----ccCCccccccccccCCeEEEEE
Q 026933 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~---~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+.... ..+++++.+++||++||++|+..+||||++|+|+|.|+ . ++|+.+|++|+|.++++|++.-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467776444 58999999999999999999999999999999999873 2 5889999999999999999863
No 148
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=2e-15 Score=102.69 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=66.3
Q ss_pred CeeeEEEccCCcEE-eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 76 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 76 ~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.|+|+|+ ..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|+++++|+++...
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 4788888 478899 6999999999999999999999999999999999999999 9999999999999887544
No 149
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.56 E-value=9.2e-15 Score=98.95 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred cCCeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEec--Cc---cc-CCCcchhhcccccCCceEE
Q 026933 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 74 ~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~---~L-~d~~~l~~~~i~~~~~i~l 145 (230)
.+.+.|+|+...+ ..+++++++++||++||++|+..+|+|++.|+|+|. |+ .| +|+++|++|+|++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3446777776655 478999999999999999999999999999999997 44 34 8999999999999999988
Q ss_pred E
Q 026933 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 150
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=5.6e-15 Score=102.58 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.7
Q ss_pred CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEecCc-----------c----ccCCccccccccccC
Q 026933 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~g~-----------~----l~d~~~l~~~~i~~~ 64 (230)
|.|+|++.+|.. .++|+ +++||.+||++|++.+|||++.|+|++.|+ . ++|+.+|++|||.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 79999 999999999999999999999999998887 4 578899999999999
Q ss_pred CeEEEEEEe
Q 026933 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999987543
No 151
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=4.9e-15 Score=100.67 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=65.4
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+ .+++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|+++++|+++...
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 34788887 578899999999999999999999999999999999999999954 59999999999999887543
No 152
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.6e-15 Score=100.28 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhcccccCCceEEEEEe
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.|.++++.++|+.+.+++++++||++||++|++++|||+++|+|++ .+..|+|+.+|++|+|++|++++++++.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 4666777789999999999999999999999999999999999985 4444999999999999999999987654
No 153
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.54 E-value=1.1e-14 Score=96.75 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=59.7
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-------cCcccCCCcchhhcccccCCceEEEEEe
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-------~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.+.+.++..+++++||++||++|+..+|+|++.|+|+| .|+.++|+++|++|||++|++|||+-+.
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 34566789999999999999999999999999999997 4788999999999999999999998543
No 154
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=3.3e-14 Score=96.00 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=74.9
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
.+.+.|+..+|+.+.+++.+++++..|+++++++.|++++.++|+|.|+.|+++.|+++|++++|++|+++++++||+.
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999963
No 155
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2.3e-14 Score=97.43 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.0
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---cc----ccCCccccccccccCCeEEEEE
Q 026933 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+..... .+.+++++++||.+||++|+..+|||+++|+|+|.| +. ++|+.+|++|||.++++||+.-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5677765443 689999999999999999999999999999999986 32 5899999999999999998863
No 156
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.53 E-value=1.4e-14 Score=120.76 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=69.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceeEEecCccccCCccccccccccCCeE-EEEEEec
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i-~l~~~~~ 74 (230)
|+|+||++.|+++.++|++++||.+||.+|+. ..|||+++|+|+|+|+.|+|+.+|++|+|.++++| +++.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 6665553
No 157
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9.1e-15 Score=97.72 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.1
Q ss_pred CeeeEEEccCCcEE--ee-ccCccCcHHHHHHHHhhH-hCCCCCCeEEEec--CcccCCCcchhhcccccCCceEE
Q 026933 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~~i~~~~q~L~~~--g~~L~d~~~l~~~~i~~~~~i~l 145 (230)
.|+|+|++..|+.+ .+ ++++++||++||++|++. .++|+++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48899999988775 47 899999999999999995 7999999999976 89999999999999999998765
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.8e-14 Score=96.16 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=61.9
Q ss_pred CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc---c----cCCCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~----L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.+.+.|+.... ..+++++++++||++||++|+..+|+|++.|+|+|.|+ . ++|+++|++|+|.+|++|+++
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 35666665443 47899999999999999999999999999999999883 3 489999999999999999887
Q ss_pred E
Q 026933 147 L 147 (230)
Q Consensus 147 ~ 147 (230)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 159
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=4.1e-14 Score=114.78 Aligned_cols=76 Identities=93% Similarity=1.274 Sum_probs=71.5
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
...|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999998765
No 160
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.50 E-value=1.7e-15 Score=114.10 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=0.7
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|+|+|++.+|++++++|++++||.+||++|+...|+|++.|+|+|.|+.|+|+.+|+ ++|+|+|++|++||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 568899999999999999999999999999999999999999999999999999998 999999999999986
No 161
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.49 E-value=8.8e-14 Score=98.76 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=62.4
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---c----cccCCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K----QLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~----~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|+...+. .+++++++++||.+||.+|+..+|||+++|+|+|.| + .++|+.+|++|||.++++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35677765553 688999999999999999999999999999999987 3 247899999999999999999853
No 162
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.9e-13 Score=91.58 Aligned_cols=78 Identities=17% Similarity=0.373 Sum_probs=74.4
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.+.|+..+|+.+.+++.+++++..|+++.+++.|++++.++|+|.|..|.++.|+++|++++|++|.+..++.||+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 467888888899999999999999999999999999999999999999999999999999999999999999999986
No 163
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=8.7e-14 Score=93.95 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=75.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|+|.|+..+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++.++.+|.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999988873
No 164
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.47 E-value=5.6e-14 Score=93.68 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.0
Q ss_pred CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEec--Ccccc---CCccccccccccCCeEEEEEE
Q 026933 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g~~l~---d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|++.+|+.. +. +++++||.+||++|++.+|||+++|+|.|. ++.++ ++.+|++|||.+++++++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999654 77 999999999999999999999999999986 46764 679999999999999888643
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.46 E-value=9.3e-14 Score=115.78 Aligned_cols=77 Identities=30% Similarity=0.550 Sum_probs=70.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhh---HhCCCCCCeEEEecCcccCCCcchhhcccccCCce-EEEEEee
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 150 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i-~l~~~~~ 150 (230)
..|+|+|+..+|+.+.++|++++||.+||.+|++ +.|+|+++|+|+|+|+.|+|+++|++|+|+++++| +++.+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4689999999999999999999999999999999 56799999999999999999999999999999999 5555554
Q ss_pred c
Q 026933 151 G 151 (230)
Q Consensus 151 ~ 151 (230)
+
T Consensus 86 ~ 86 (368)
T 1oqy_A 86 A 86 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 166
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=1.8e-13 Score=92.96 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.2
Q ss_pred eeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC---cc----cCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
+.|.|+..+.. .+.+++++++||++||++|++.+|+|+++|+|+|.| +. ++|+++|.+|||.+|++|++.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56667655443 688999999999999999999999999999999986 43 5899999999999999998864
No 167
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=4.5e-13 Score=89.79 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=75.0
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..|+|.|++.+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|++++++.+|++|+++..+.+|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999888774
No 168
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.42 E-value=7.6e-13 Score=89.22 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=70.3
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.+.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|+.+|++++|++|+++.++.||
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 36677888888899999999999999999999999999999999999999999999999999999999999999987
No 169
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.41 E-value=2.3e-13 Score=111.79 Aligned_cols=75 Identities=21% Similarity=0.444 Sum_probs=66.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCccccCCccccccccccCCeEEEEEEecCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|+|+ .+|+++++++++++||++||++|++.+||||++|+|+ |+|+.|+|+.+|++|+|.++++++|+......
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 468888 5799999999999999999999999999999999999 89999999999999999999999998766543
No 170
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=2.2e-13 Score=94.54 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.1
Q ss_pred CeeeEEEccCCcEEeeccC-ccCcHHHHHHHHhhHhCCCCCCeEEEecCc-----------c----cCCCcchhhccccc
Q 026933 76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----------~----L~d~~~l~~~~i~~ 139 (230)
.|.|+|++.+|.. .++++ +++||.+||++|++++++|++.|+|++.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3889999999966 78999 999999999999999999999999998887 4 58899999999999
Q ss_pred CCceEEEEE
Q 026933 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|++...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988754
No 171
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.39 E-value=1.5e-12 Score=92.41 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=61.1
Q ss_pred eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC---e---e-cCCCCcccccCCCCCCEEEEEE
Q 026933 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g---~---~-L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
+.+.|++.... .+++++++++||++||++|+...|+|+++|+|+|.| + . ++|+++|++|+|++|++|+|..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 45666654443 688999999999999999999999999999999976 3 2 4899999999999999999875
No 172
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=6.9e-13 Score=90.98 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=73.9
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.+.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|+.+|++++|++|+++.++.||+
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 366778888899999999999999999999999999999999999999999999999999999999999999999997
No 173
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.38 E-value=1.6e-12 Score=83.45 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|+|+.|.++.|.++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999885
No 174
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.37 E-value=1.3e-12 Score=88.03 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=72.0
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++.+|++|+++.++.||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3457888999999999999999999999999999999999999999999999999999999999999999999887764
No 175
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.36 E-value=2.5e-12 Score=88.26 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.3
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+.+.|+. .|+.+.+++.+++++..|+++++++.|++++.++|+|.|..|.++.|.++|++++|++|.+.+++.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 6678888 89999999999999999999999999999999999999999999999999999999999999999987
No 176
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.36 E-value=7.7e-13 Score=88.11 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=61.7
Q ss_pred eeeEEEccCCcEEeec-cCccCcHHHHHHHHhhHhCCCCCCeEEEec--CcccC---CCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~~L~---d~~~l~~~~i~~~~~i~l~~ 147 (230)
|+|.|+..+|+.. +. +++++||++||+.|+++.|+|+++|+|+|+ ++.+. |+.+|++|||.+|++|++..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 6789999999654 77 999999999999999999999999999986 47774 68899999999999987764
No 177
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.35 E-value=2.2e-12 Score=82.82 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.4
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
|+|.|++.+|+.+.+.+.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|.+++++.+|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999999999999999999999999999999999999886
No 178
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.1e-12 Score=88.59 Aligned_cols=78 Identities=15% Similarity=0.361 Sum_probs=73.7
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
..|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.+|++|+++.++.+|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999887766
No 179
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.33 E-value=2.2e-12 Score=89.22 Aligned_cols=81 Identities=15% Similarity=0.397 Sum_probs=75.0
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++.+|++|++++.+.+|+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred e
Q 026933 154 Q 154 (230)
Q Consensus 154 ~ 154 (230)
.
T Consensus 104 ~ 104 (110)
T 2k8h_A 104 E 104 (110)
T ss_dssp -
T ss_pred c
Confidence 3
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=9.7e-12 Score=81.22 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCeeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
..|.|.|+..+|+ .+.+.+.+++++..|+.+++++.|++++.++|+|.|+.|.++.|.+++++.+|++|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4688999999996 89999999999999999999999999999999999999999999999999999999875
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.31 E-value=2.3e-12 Score=89.08 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=73.0
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.+.+.|+...|+.+.+++.+++++..|+++++++.|++++.++|+|.|..|.++.|+.+|++++|++|.+++.+.||
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 36778888889999999999999999999999999999999999999999999999999999999999999999887
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.30 E-value=1e-11 Score=81.09 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|++++.|+|+|+|+.|.++.|.++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999874
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.30 E-value=4.1e-12 Score=87.19 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=70.7
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
..|.|.|+. +|+.+.+.|..++++..|+.+++++.|++++.++|+|+|+.|.++.|.+++++.+|++|++++++.||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458899999 99999999999999999999999999999999999999999999999999999999999999887664
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=3.3e-12 Score=104.92 Aligned_cols=76 Identities=21% Similarity=0.434 Sum_probs=66.5
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
.++|+|+ .+|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|.|+.+|++|+|++|++|+++......
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 4678888 5889999999999999999999999999999999999 89999999999999999999999998665443
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=2.1e-11 Score=83.01 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=60.5
Q ss_pred EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC-------ccc-cCCccccccccccCCeEEEE
Q 026933 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g-------~~l-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|+. .+|..+...+++++||++||.+|+..+|+|++.|+|+|.+ ..| +|..+|..|++.++++||+.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466664 4688999999999999999999999999999999999873 224 56799999999999999987
Q ss_pred E
Q 026933 71 L 71 (230)
Q Consensus 71 ~ 71 (230)
.
T Consensus 91 d 91 (97)
T 1wjn_A 91 W 91 (97)
T ss_dssp C
T ss_pred e
Confidence 5
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=2e-10 Score=78.06 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=60.0
Q ss_pred eEEEee---ecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEEEEE
Q 026933 154 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~---~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g-------~~L-~d~~~L~~~~i~~g~~i~l~ 222 (230)
.+.|++ .+++.+...++.++||++||.+|+..+|+|+..|+|.|.+ ..| +|.++|++|++.+|++|++.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 444443 3577899999999999999999999999999999999762 225 78999999999999999987
Q ss_pred EE
Q 026933 223 LR 224 (230)
Q Consensus 223 ~~ 224 (230)
-.
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.08 E-value=8.5e-10 Score=76.35 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~ 227 (230)
+.+.|+..+|+.+.+.+.+++++..|++..+++.|+++..++|+|.|..+.++.|..++++++|++|.+...+.|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 567777778888999999999999999999999999999999999999999999999999999999999988764
No 188
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.03 E-value=8.9e-10 Score=76.25 Aligned_cols=75 Identities=16% Similarity=0.375 Sum_probs=70.4
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
..+.|.|+..+|..+.+.|..++++..|+...+++.|++++.++|+|+|+.|.++.|.+++++.+|++|.++...
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 457888888899999999999999999999999999999999999999999999999999999999999998754
No 189
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.1e-09 Score=81.67 Aligned_cols=76 Identities=12% Similarity=0.295 Sum_probs=71.2
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|.. +|+.+.+.+.+++++..|++..+++.|+++..++|+|.|..+.++.|..++++++||+|.++..+.||+
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 5566653 788999999999999999999999999999999999999999999999999999999999999999996
No 190
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.4e-09 Score=81.46 Aligned_cols=76 Identities=14% Similarity=0.364 Sum_probs=71.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|+. .|+...+.+.+++++..|++..+++.|++++.++|+|.|+.+.++.|..++++++|++|.++..+.||+
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 5566654 788899999999999999999999999999999999999999999999999999999999999999986
No 191
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.3e-09 Score=80.01 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=73.0
Q ss_pred ecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...++|.|+ .+|..+.+.+..++++..|+...+++.|++++.+|++|+|+.+.++.|.+++++.+|++|+++..+.+|
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 3456788886 488899999999999999999999999999999999999999999999999999999999999988766
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.7e-09 Score=79.53 Aligned_cols=80 Identities=11% Similarity=0.275 Sum_probs=73.7
Q ss_pred ecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...+.|.|+ .+|..+.+.|..++++..|+...+++.|+++..++++|+|+.+.++.|.+++++.+|++|.+++...+|
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3456788886 488899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred e
Q 026933 153 M 153 (230)
Q Consensus 153 ~ 153 (230)
.
T Consensus 133 ~ 133 (207)
T 3tix_A 133 L 133 (207)
T ss_dssp G
T ss_pred C
Confidence 4
No 193
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.82 E-value=2.3e-08 Score=63.07 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.5
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
+.+.+++.....+.+.++++++|.+|-...+.+.+||++ .++|.|.|..|+++.++.+|++.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 455666677777899999999999999999999999999 89999999999999999999999999998864
No 194
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.80 E-value=6.8e-10 Score=83.86 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=2.0
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~ 230 (230)
..+.+.| ..+|+...+++.+++.+..|++..+++.|++++.++|+|.|..+.++.|..++++++||+|.++..+.||+.
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 3456667 557888999999999999999999999999999999999999999999999999999999999999999973
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.77 E-value=5.5e-09 Score=68.09 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc---c--cCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~---l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.+.|++.+| ++.+++++++|+.+|+.+|.+.++++++.|.+++...+ | .++.+|+++||..|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788988887 77788999999999999999999999999888865433 3 46789999999999998764
No 196
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.77 E-value=8.2e-08 Score=60.53 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=63.2
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
.+..++.....+.+.+.++.+|.+|-+..+.+-||+++ .++|.|.|..|+++.++++|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 44556655667999999999999999999999999999 89999999999999999999999999998864
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.72 E-value=1.4e-09 Score=82.08 Aligned_cols=83 Identities=12% Similarity=0.308 Sum_probs=1.7
Q ss_pred EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
..+...|.|.| ..+|..+.+.|..++++..|+...+++.|++++.++++|+|+.+.++.|.+++++.+|++|.++....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456788888 77899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccee
Q 026933 151 GGMQ 154 (230)
Q Consensus 151 ~~~~ 154 (230)
||..
T Consensus 95 GG~~ 98 (227)
T 3v7o_A 95 GGLT 98 (227)
T ss_dssp -CCC
T ss_pred CCch
Confidence 8853
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.65 E-value=3.2e-08 Score=64.43 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=58.3
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc---cc--CCCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---QL--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~L--~d~~~l~~~~i~~~~~i~l~ 146 (230)
.|.+.|++.+| .+.+++++++|+.+|+.+|++.++++++.+.+.+... .+ .++.+|+++|++.|+.|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47888998887 5678899999999999999999999998887765433 33 47889999999999998764
No 199
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.54 E-value=4.3e-06 Score=70.19 Aligned_cols=136 Identities=24% Similarity=0.343 Sum_probs=107.3
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhC----CCCCCeEEEe------cCcccCCCcchhhcccccCCceEEEEEeecceeE
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i 155 (230)
+.+-.+.++++.||.+....|.++.. .++++.-|++ .|.-|+++++|..|++.+++.+.... ..+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 66678999999999999999988874 4678888887 34558888999999999998775543 34678
Q ss_pred EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEECC---------eecCCCCcccccCCCCCCEEEEEEE
Q 026933 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~g---------~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
.|..++|+...+.+++.+|+.++-..|+.+.|+... .+-|.+.. .-|+.++++.+.+..+...+++.+|
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 889999999999999999999999999999998654 45555422 2356677888877777777666544
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.52 E-value=4e-07 Score=61.14 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=65.9
Q ss_pred CCeeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933 75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
..+.|.|+..+|. .+.+.+..+++...|....+++.|++++..++.|.|..+.++.|..++++.+|++|.++
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4577788888884 78999999999999999999999999999999999999999999999999999999774
No 201
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.49 E-value=6.9e-07 Score=60.00 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.2
Q ss_pred eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026933 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~ 222 (230)
+.+.|+..+++ .+.+.+..+++...|....+++.|+++...+|+|.|..+.++.|..++++++|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 56677777774 78999999999999999999999999999999999999999999999999999999874
No 202
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.47 E-value=3.9e-07 Score=60.51 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=47.0
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccc--cCCccccccccccCC
Q 026933 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKES 65 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l--~d~~~l~~~~i~~~~ 65 (230)
..+..+.+.+++++||..+|++|++.+|||+++|+|.|.|+.+ +.+..-..|.-...+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~ 80 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEE 80 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCC
Confidence 4577889999999999999999999999999999999999654 445555555544333
No 203
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.46 E-value=4.5e-07 Score=59.38 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
+||.+.|-..+++...+.+.++.++.++-++.++++|++++++.|.|+++.+|-+.+++-.|+.+|+++.++-+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 45778888889999999999999999999999999999999999999999999999999999999999998754
No 204
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.37 E-value=1.2e-06 Score=67.63 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=71.1
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
..+.+.|+. .++.+.+++..++++..|++..+++.|++++.++|+|.|..+.++.|..++.++++++|.+..++.||.
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 345566665 677889999999999999999999999999999999999999999999999999999999999999875
No 205
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.36 E-value=2.3e-05 Score=65.76 Aligned_cols=138 Identities=24% Similarity=0.351 Sum_probs=106.0
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceeEEec------CccccCCccccccccccCCeEEEEEEe
Q 026933 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g----ip~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.|... +-+.++.++|+.||.|+-..|.++.. .+.++-.|++. |+=|+++++|..|++..++.+....+.
T Consensus 7 ~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~ 85 (371)
T 3ivf_A 7 KISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ 85 (371)
T ss_dssp EEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE
T ss_pred EEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce
Confidence 34333 77889999999999999999977764 35777788873 333888999999999999988877544
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecC---------cccCCCcchhhcccccCCce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g---------~~L~d~~~l~~~~i~~~~~i 143 (230)
+.+.|..++|....+.+++++|+.++-..|+++.|+.. +..-|.+.. .-|+.++++.+.+......+
T Consensus 86 ---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l 162 (371)
T 3ivf_A 86 ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETL 162 (371)
T ss_dssp ---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEE
T ss_pred ---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceE
Confidence 78899999999999999999999999999999999754 345666532 23556677777665444444
Q ss_pred EE
Q 026933 144 HL 145 (230)
Q Consensus 144 ~l 145 (230)
.+
T Consensus 163 ~f 164 (371)
T 3ivf_A 163 LL 164 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 206
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.35 E-value=5.5e-08 Score=80.15 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=0.6
Q ss_pred eecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+...+.+.|+. .|+...+++..++++..|++..+++.|++++.++|+|.|+.+.++.|.+++++++||+|.+...+.||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 33445666765 57788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 026933 229 G 229 (230)
Q Consensus 229 ~ 229 (230)
+
T Consensus 97 ~ 97 (360)
T 3ix6_A 97 M 97 (360)
T ss_dssp C
T ss_pred H
Confidence 6
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.32 E-value=2.8e-06 Score=55.57 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.+|.|.|-..++++..+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988753
No 208
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.31 E-value=7.2e-08 Score=79.43 Aligned_cols=83 Identities=13% Similarity=0.317 Sum_probs=0.5
Q ss_pred EEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
...+...+.|.|+. +|..+.+.+..++++..|+.+.+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.++...
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34455667888876 67788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecce
Q 026933 150 RGGM 153 (230)
Q Consensus 150 ~~~~ 153 (230)
.+|+
T Consensus 94 ~g~~ 97 (360)
T 3ix6_A 94 IGGM 97 (360)
T ss_dssp ---C
T ss_pred CchH
Confidence 8884
No 209
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.26 E-value=5.1e-06 Score=54.84 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=65.8
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.+.|.|+ .+|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.++++|.++.-
T Consensus 21 ~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 21 LFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred eEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 4677777 46888899999999999999999999999999999999999999999999999999999988753
No 210
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.23 E-value=1.5e-06 Score=67.09 Aligned_cols=82 Identities=12% Similarity=0.303 Sum_probs=71.8
Q ss_pred EEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|.|+. ++..+.+.+..++++..|+.+.+++.|++++.++++|.|+.+.++.|.++..+.+++.|.+....
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 34445667788876 77788999999999999999999999999999999999999999999999999999999998877
Q ss_pred ecc
Q 026933 150 RGG 152 (230)
Q Consensus 150 ~~~ 152 (230)
.+|
T Consensus 94 ~Gg 96 (209)
T 3uf8_A 94 IGG 96 (209)
T ss_dssp TTC
T ss_pred ccc
Confidence 664
No 211
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.21 E-value=2.5e-06 Score=59.94 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=58.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceeEEe
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-------------------------------------~q~l~~ 45 (230)
+.|+.++|...++.|+.+.||.+++..|++..||+.. .|+|..
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999965 334322
Q ss_pred --cCccccCCccccccccccCCeEEEEEE
Q 026933 46 --AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 46 --~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+.-|+++.||.++||..++++.|.-+
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 124577889999999999999877654
No 212
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.19 E-value=5.5e-05 Score=66.27 Aligned_cols=184 Identities=11% Similarity=0.207 Sum_probs=129.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-Ccc-------ccC-----CccccccccccCCeEEEEEEe-----
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------LED-----GRTLADYNIQKESTLHLVLRL----- 73 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~-------l~d-----~~~l~~~~i~~~~~i~l~~~~----- 73 (230)
..++.|...+|+.+||+.|.+.+|+|+++|||+.. .+. +.+ ..++.++.- .++.+.+.+..
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~ 115 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPEL 115 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHH
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEeccccc
Confidence 34789999999999999999999999999999943 110 111 122333211 23334444321
Q ss_pred ------------cCCeeeEEEccC--CcEE----eeccCccCcHHHHHHHHhhHhCCCCCCeEEEec------CcccC-C
Q 026933 74 ------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-D 128 (230)
Q Consensus 74 ------------~~~~~v~v~~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~------g~~L~-d 128 (230)
...+-|++|..+ .+++ .+.++.+++|+++-..|.+..|+|++.-..+|. ...|+ .
T Consensus 116 ~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 116 AASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp HTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred CCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccc
Confidence 113677777654 3343 356888999999999999999999987655554 24466 5
Q ss_pred Ccchhhc--ccccCCceEEEEEeecc------------------eeEEEee---ecCceEEEEeeccccHHHHHHHhchh
Q 026933 129 GRTLADY--NIQKESTLHLVLRLRGG------------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDK 185 (230)
Q Consensus 129 ~~~l~~~--~i~~~~~i~l~~~~~~~------------------~~i~v~~---~~~~~~~~~v~~~~tV~~LK~~i~~~ 185 (230)
+.|+.++ .+.+|+.|.+-...... +.+.++. .+...+.++++...|-.++-++|++.
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~ 275 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 275 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred cccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 7899999 99999987555443311 3333332 22456999999999999999999999
Q ss_pred cCCCCCceEEE
Q 026933 186 EGIPPDQQRLI 196 (230)
Q Consensus 186 ~gi~~~~~~L~ 196 (230)
.+++|...+|.
T Consensus 276 l~~dP~~lRf~ 286 (530)
T 2ylm_A 276 LNTDPMLLQFF 286 (530)
T ss_dssp HTSCGGGEEEE
T ss_pred hCCCchhEEEE
Confidence 99999998886
No 213
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.19 E-value=8.1e-06 Score=53.89 Aligned_cols=70 Identities=14% Similarity=0.309 Sum_probs=64.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
+.+.|+. .|....+.+..++....|.+..+++.|++++..+++|.|..+.++.|.+++++++|++|.+++
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 4556663 678899999999999999999999999999999999999999999999999999999999876
No 214
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.13 E-value=7.1e-06 Score=54.42 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=50.1
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeec--CCCCcccccC-CCCCCEEEEEEE
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN-IQKESTLHLVLR 224 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L--~d~~~L~~~~-i~~g~~i~l~~~ 224 (230)
.++.+.+.+.+.+|+..+|++|++++|||++.|+|+|.|+.| +++++-..|- -.+..-|.|+-+
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 567899999999999999999999999999999999999654 5555555553 234455555543
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.03 E-value=6.9e-06 Score=57.71 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=58.7
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEE-----------------------------------
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----------------------------------- 197 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~----------------------------------- 197 (230)
.+.|+.++|+..++.|+...||.+++..||.+.||+.. .+-|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 57889999999999999999999999999999998743 343432
Q ss_pred ---CCeecCCCCcccccCCCCCCEEEEEEE
Q 026933 198 ---AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 198 ---~g~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
...-|++++||.++||.+++++.|..|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 124568899999999999999877665
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.98 E-value=9.3e-07 Score=74.72 Aligned_cols=76 Identities=12% Similarity=0.323 Sum_probs=0.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.+.|+. .++...+++..+++...|++..+++.|+++..++|+|.|+.+.++.|..++++++|++|.+...+.||.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 4455555 567788999999999999999999999999999999999999999999999999999999999999885
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.97 E-value=9.7e-07 Score=74.62 Aligned_cols=83 Identities=11% Similarity=0.318 Sum_probs=0.0
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...+.|.|+. ++..+.+.+..+++...|+...+++.|+++..+++.|+|+.+.++.|.+++++.+|++|.++....+|.
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 3456677766 677888999999999999999999999999999999999999999999999999999999999988886
Q ss_pred eEEE
Q 026933 154 QIFV 157 (230)
Q Consensus 154 ~i~v 157 (230)
.+.+
T Consensus 107 n~~~ 110 (389)
T 4da1_A 107 NLYF 110 (389)
T ss_dssp ----
T ss_pred ccce
Confidence 5544
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.77 E-value=7.7e-05 Score=48.06 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=55.9
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-----eeEEecCccccCCccccccccccCCeEEE
Q 026933 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-----q~l~~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|++.. ..|+++.++++...||.+|...+-+.++++... -+..=.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466654 579999999999999999999999999988632 22223578899999999999999999865
No 219
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.66 E-value=0.0085 Score=52.44 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=125.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ec---Cc---c--ccCCccccccccc----cCCeEEEEEEe--
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA---GK---Q--LEDGRTLADYNIQ----KESTLHLVLRL-- 73 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~---g~---~--l~d~~~l~~~~i~----~~~~i~l~~~~-- 73 (230)
+...|.++++...|-.++-++|.+..|+.|..-||+ .+ +. . ...+.+|.+.=.. ....+...+-.
T Consensus 251 ~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ip 330 (530)
T 2ylm_A 251 NDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMK 330 (530)
T ss_dssp TCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSC
T ss_pred CCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCC
Confidence 356799999999999999999999999999988876 21 21 1 1223444432111 11223222211
Q ss_pred ------cCCeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCC---CCCeEEE--ecC---cccCCCcchhhccc
Q 026933 74 ------RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAG---KQLEDGRTLADYNI 137 (230)
Q Consensus 74 ------~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~---~~~q~L~--~~g---~~L~d~~~l~~~~i 137 (230)
...++|+....+. ..+.+-++.+.||++|-..++++.+++ ....|+. +++ +.+.++.++.+..-
T Consensus 331 l~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 331 ITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp HHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred HHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 1345665543332 357788899999999999999999987 4667775 666 45677778876532
Q ss_pred ccCCceEEEEEee--------cceeEEEee-------ecCceEEEEeeccccHHHHHHHhchhcCCCC---CceE--EEE
Q 026933 138 QKESTLHLVLRLR--------GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQR--LIF 197 (230)
Q Consensus 138 ~~~~~i~l~~~~~--------~~~~i~v~~-------~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~---~~~~--L~~ 197 (230)
.....+.+..-+. +.+.+.|.. ..|..+.+.+.+..|+.++|++|.+++|++. +.++ ++.
T Consensus 411 ~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~ 490 (530)
T 2ylm_A 411 ATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVM 490 (530)
T ss_dssp CTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEE
T ss_pred cccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEE
Confidence 2244444432221 112233322 2366788999999999999999999999873 3444 454
Q ss_pred CC--eecCCCC
Q 026933 198 AG--KQLEDGR 206 (230)
Q Consensus 198 ~g--~~L~d~~ 206 (230)
.+ ..++|+.
T Consensus 491 ~~~~~yl~d~d 501 (530)
T 2ylm_A 491 MGRHQYINEDE 501 (530)
T ss_dssp TTEEEECCTTT
T ss_pred CCcccccCCcc
Confidence 44 3455543
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.65 E-value=0.00026 Score=46.15 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.2
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~ 223 (230)
..+.++.++|+.+.-.+..++|+.+|..-|.. .+.++..+.|+ |..+.+ +.++||.+.|+.+++++.+--
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45778888999889999999999999999988 56778889998 556777 457899999999999998753
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.60 E-value=0.00051 Score=44.73 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=57.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc---CCccccccccccCCeEEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~---d~~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|..+.-....++||.+|...|.. .+.++....|. |-.+.+. .+.||.+.|+.+++++.+-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5789999999999999999999999999998 67777777777 5567773 4689999999988887764
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.58 E-value=0.00022 Score=45.94 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=52.3
Q ss_pred ecCceEEEEeeccccHHHHHHHhchhcCCCC--Cc-e--EEEECCeecCCCCcccccCCCCCCEEEE
Q 026933 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQ-Q--RLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~--~~-~--~L~~~g~~L~d~~~L~~~~i~~g~~i~l 221 (230)
..++.+.+.++...|+.+|...+.+.++++. .. . +..-.+..|.+...|.+|+|.+||.+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 5688999999999999999999999988653 22 3 3346778899999999999999999875
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.33 E-value=0.00055 Score=48.04 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=60.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCccc--CC-CcchhhcccccCCceEEE
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d-~~~l~~~~i~~~~~i~l~ 146 (230)
+...|.|+..+|..+.-.+..++||.+|..-|... +.+.....|+ |..+.+ .| +.+|.+.|+.+.+.+.+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 34678889999999999999999999999999887 7777888888 567888 33 789999999998888664
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.32 E-value=0.0014 Score=44.87 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=60.0
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~ 146 (230)
..+|.|+..+|..+.-.++.++||.++..-|....+.+.....|. |..+.+. .+.||++.|+.+.+++.+.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 457888899999999999999999999999999888777788887 5667775 3789999999998777554
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.21 E-value=0.0024 Score=43.65 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=58.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc--C-CccccccccccCCeEEEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~--d-~~~l~~~~i~~~~~i~l~~ 71 (230)
+|.|+..+|..+.-..+.++||.+|...|....+.+...-.|. |..+.+. | +.||.+.|+.+...+.+..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5889999999999999999999999999999988775555665 5567775 3 6899999999887766654
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.11 E-value=0.0019 Score=45.24 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=60.2
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
..|.+|.++|+.+.-.+..++|+.+|..-|... +.++..+.|+ |-.+.+ +.+++|.+.|+.+.+.+.+...
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 567888889999999999999999999999887 7788889888 567777 3479999999999888877543
No 227
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.0029 Score=40.46 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEec---CcccCCCcchhhccccc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~~l~~~~i~~ 139 (230)
..+++.|+....+...+.|++..+.+++--.|+++..+.++...|... +..|+-+++|.||||++
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456677777777888899999999999999999999999999999854 46788899999999986
No 228
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.88 E-value=0.0052 Score=38.85 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=47.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+..+.....++++++.||+||=++ .|+|++.-....||+.+..+.. .+++++.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 89999999655667999999999998776 8999988877789988876662 246776664
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.0026 Score=40.63 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=54.6
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~---~g~~L~d~~~L~~~~i~~ 215 (230)
+.+.|+....+..-+.|+|..+.++|--.|+++..++|+...|.. .+..|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 445566666778899999999999999999999999999999984 446889999999999987
No 230
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.72 E-value=0.0061 Score=41.63 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=57.2
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC--CCcchhhcccccCCceEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~~l~~~~i~~~~~i~l~ 146 (230)
..+|.|+..+|+.+.-.+..++||.+|..-|... +..+....|. |-.+.+. .+.||++.|+.+.+++.|.
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 3578888899999888899999999999999865 5566778887 5577775 4789999999998877554
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.58 E-value=0.0082 Score=40.97 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.0
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEEEE
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~--d~~~L~~~~i~~g~~i~l~~~ 224 (230)
..|.+|.++|+.+.-.+..++||.+|..-|... +..+..+.|+ |-.+.+. .++||.+.|+.+.+++.|.-+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 457788888988888999999999999999865 5566778887 5566674 579999999999999977543
No 232
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.42 E-value=0.01 Score=41.71 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=54.6
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHh-CCCCCCeEEE--ecCcccCC-CcchhhcccccCC
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~ 141 (230)
..+|.|+..+|..+.-.++.++||.+|..-|.... +.....+.|+ |..+.+.| +.||.+.|+.+..
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 46788899999999999999999999999998864 3556677887 55778865 6899999998754
No 233
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.02 E-value=0.021 Score=44.01 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=53.4
Q ss_pred eEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEEEecCCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~--~-~g--~~L~d-~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+++.++..+|+.+|++.+++.++++++ ..+|- + .+ ..|++ ++||.++++.+|..|.+-.|...|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~ 213 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGT 213 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-C
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 4667889999999999999999999987 67775 3 22 45655 6799999999999999988876663
No 234
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.92 E-value=0.074 Score=33.85 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=53.3
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~ 226 (230)
+...++-..++..||+.++.+.|++.+.+.+...+..|+++++|-+.+++-...+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 44556667788999999999999999999998778779999999999999998988877643
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.90 E-value=0.019 Score=40.33 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=52.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhh-CCCCCceeEE--ecCccccC-CccccccccccCCe
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~l~--~~g~~l~d-~~~l~~~~i~~~~~ 66 (230)
+|.|+..+|..+.-..+.++||.+|...|.... +.......|+ |-.+.+.| +.||.+.|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 578999999999999999999999999999974 3444445555 55677876 59999999987443
No 236
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.80 E-value=0.048 Score=42.34 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=53.6
Q ss_pred eEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE-EC----CeecCC-CCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~-~~----g~~L~d-~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.++..++..+|+.+|++.+++.++++++ ..+|- +. ...|.| +.+|.++++.+|..|.+-.|...|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567788999999999999999999997 58876 33 245654 689999999999999998886665
No 237
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.58 E-value=0.071 Score=36.15 Aligned_cols=63 Identities=38% Similarity=0.488 Sum_probs=45.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEEC----CeecCCC-------------CcccccCCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~~----g~~L~d~-------------~~L~~~~i~~g 216 (230)
+..+++.+-..+||.++|++|-... |.| ++.+.|-|. |+.|.|. .||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888999999999999998764 443 456667652 3455442 48999999999
Q ss_pred CEEEEEEE
Q 026933 217 STLHLVLR 224 (230)
Q Consensus 217 ~~i~l~~~ 224 (230)
+++.+.-+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99987653
No 238
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.53 E-value=0.059 Score=36.54 Aligned_cols=62 Identities=39% Similarity=0.512 Sum_probs=44.1
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec----CcccCC-------------CcchhhcccccC
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLED-------------GRTLADYNIQKE 140 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d-------------~~~l~~~~i~~~ 140 (230)
+..+++.|-..+||.++|++|-+.. |.| ++.+.|-|. |+.|.| =.||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999998753 333 456667663 344443 148999999999
Q ss_pred CceEEEE
Q 026933 141 STLHLVL 147 (230)
Q Consensus 141 ~~i~l~~ 147 (230)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997653
No 239
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.41 E-value=0.24 Score=30.59 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=46.1
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
|.+.+.... ....++++...|+.+|.+.+ ++++....+..+|.....+. -+++||.|.++- +.+||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~-~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR-VIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE-CTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe-ccccC
Confidence 555555432 23456777778999998876 46677777779998886554 688999997776 44444
No 240
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.30 E-value=0.093 Score=36.90 Aligned_cols=65 Identities=32% Similarity=0.525 Sum_probs=47.9
Q ss_pred CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~----~g~-~L~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... |.| ++..-|-| .|+ .|.|. .||+.|+|++
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568999999999999999998865 444 34566655 233 35543 3899999999
Q ss_pred CCEEEEEEEec
Q 026933 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++.++-+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999987653
No 241
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.21 E-value=0.19 Score=34.76 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=47.9
Q ss_pred cCceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 214 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~-~g---~-~L~d~-------------~~L~~~~i~ 214 (230)
.+..+++.+-..+||.++|++|-... |.| ++.+.|-| .| + .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888989999999999998764 433 45677765 22 3 35442 489999999
Q ss_pred CCCEEEEEEEe
Q 026933 215 KESTLHLVLRL 225 (230)
Q Consensus 215 ~g~~i~l~~~~ 225 (230)
+|+++-+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999987653
No 242
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.18 E-value=0.043 Score=34.53 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=47.5
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
|++.|+........+++++..||++|-+. .++|++......||+.+..+. +.+|+.+.++---.||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 56777766545556899999999997654 899999997779998886555 2358888765433333
No 243
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.13 E-value=0.069 Score=37.58 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=46.1
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec----Cc-ccCCC-------------cchhhccccc
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~~l~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++..-|-|. |+ .|.|. .||+.|++.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568899999999999999998864 343 445556552 22 25442 3899999999
Q ss_pred CCceEEEEEe
Q 026933 140 ESTLHLVLRL 149 (230)
Q Consensus 140 ~~~i~l~~~~ 149 (230)
|+++.++.+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887554
No 244
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.13 E-value=0.052 Score=41.74 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=49.7
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEE--ecC---cccCC-CcchhhcccccCCceEEEEEe
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FAG---KQLED-GRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~--~~g---~~L~d-~~~l~~~~i~~~~~i~l~~~~ 149 (230)
.+.+.++..+|+.+|++.+++.+++|++ ..||. +.. ..|++ +.||.++++.++..|.+-.+.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3567789999999999999999999997 68886 222 44555 579999999999988766554
No 245
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.79 E-value=0.065 Score=34.42 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+.|.|... -++.+.+++..+..+|+.+|+++.++|++...|.|...
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 55666555 68999999999999999999999999999999999763
No 246
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.77 E-value=0.078 Score=41.15 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=49.7
Q ss_pred EeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEe-cC----cccCC-CcchhhcccccCCceEEEEEee
Q 026933 89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~g----~~L~d-~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
+.+.++..+|+.+|++.+++.++++.+ ..||.. .+ ..|.| +.+|.++++.++..|.+-.+..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 556778999999999999999999997 688873 32 34655 6899999999999886665543
No 247
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.57 E-value=0.16 Score=31.34 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=45.4
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.|+|+|+...+ ...++++...|+.+|.+.+ ++++....+..||..+..+. -+++|+.|.++..
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 47777765443 2345677778999998875 56777777778998886554 5788999877643
No 248
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.50 E-value=0.17 Score=31.54 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=45.6
Q ss_pred CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gip~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|+....-. ..+++ ...||.+|.+.+....++.. ..-.+..||+...+ .+..+.+++++.++...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 889999875422 34777 67899999999987544332 22344467766442 34568888998887543
No 249
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.31 E-value=0.26 Score=31.32 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=52.7
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+.-.++=.+++..||..++.+.|++-+.-.+++++..|+++++|.+-++..+..+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 344667788999999999999999999999999988899999999999999888877654
No 250
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.27 E-value=0.22 Score=34.53 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=46.6
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec-C---c-ccCC-------------Ccchhhccc
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNI 137 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~~l~~~~i 137 (230)
.++..+++.|-..+||.++|++|-+.. +.| ++.+.|-|. | + .|.| =.||++|++
T Consensus 14 ~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 14 CGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp SCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 345668888889999999999998753 333 456667652 2 2 2443 158999999
Q ss_pred ccCCceEEEEE
Q 026933 138 QKESTLHLVLR 148 (230)
Q Consensus 138 ~~~~~i~l~~~ 148 (230)
.+|+++.+..+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999977643
No 251
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.95 E-value=0.058 Score=37.92 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~ 46 (230)
..++.|...+|+.++|..|.+.+|+|+++|||+..
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 45789999999999999999999999999999953
No 252
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.83 E-value=0.22 Score=34.08 Aligned_cols=63 Identities=32% Similarity=0.518 Sum_probs=44.6
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec-C---c-ccCC---------C----cchhhccccc
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED---------G----RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d---------~----~~l~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++.+.|-|. | + .|.| . .||++|++.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888889999999999998753 343 345566652 3 2 2333 1 4899999999
Q ss_pred CCceEEEEE
Q 026933 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|+++.++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988754
No 253
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.65 E-value=0.16 Score=32.52 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
++||..=..++.|+|+++.+..+|..+|.++.++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 344444337999999999999999999999999999888888865
No 254
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.58 E-value=0.18 Score=34.49 Aligned_cols=64 Identities=31% Similarity=0.499 Sum_probs=47.0
Q ss_pred CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~-~g---~-~L~d~-------------~~L~~~~i~~ 215 (230)
...+++.+-..+||.++|++|-... |.| ++.+.|-| .| + .|.|. .||++|+|++
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3458888889999999999998764 444 34566665 23 2 24331 4899999999
Q ss_pred CCEEEEEEEe
Q 026933 216 ESTLHLVLRL 225 (230)
Q Consensus 216 g~~i~l~~~~ 225 (230)
|+++.++-|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998765
No 255
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.85 E-value=0.6 Score=30.75 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCeeeEEEccC------C-cEEeeccCccCcHHHHHHHHhhHhC-C----------CCCCeEEEecCcccCCCcchhhcc
Q 026933 75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 75 ~~~~v~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~~l~~~~ 136 (230)
+.|+|.|+... | ....++++...||.+|.+.+...+. + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45777777542 2 4567777778899999999987742 1 1234567788877753 567
Q ss_pred cccCCceEEEEE
Q 026933 137 IQKESTLHLVLR 148 (230)
Q Consensus 137 i~~~~~i~l~~~ 148 (230)
+++|+.|.++..
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 889999877643
No 256
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.69 E-value=0.87 Score=29.97 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=40.6
Q ss_pred ceEEEEeeccccHHHHHHHhchhcC-C----------CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i----------~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
....+++.+..||.+|.+.+..... + ......+..+|+.... +.-+++||.|.++- +.+||
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p-pv~GG 98 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP-PVSGG 98 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES-CC---
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC-CCCCC
Confidence 3567777778899999999887641 1 1244566678876652 56789999997755 44443
No 257
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.63 E-value=0.52 Score=30.48 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=41.6
Q ss_pred EEEeecc-ccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 166 TLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~-~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
++++++. .||.+|.+.+ ++++....+..+|.....+ ...+.-+++||.|.++-- .+||
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~-V~GG 87 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF-VGGG 87 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE-CCC-
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc-cccC
Confidence 3445665 8999998876 5667777777999887643 455677999999988764 4444
No 258
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.24 E-value=0.69 Score=36.87 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=54.7
Q ss_pred eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE---CC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026933 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~---~g--~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
+.+.|...+| ++.+++++.+|+.++-+.|+...|+.... +-|.+ .| .-|+.++++.+.+++.+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4566777777 67899999999999999999999986654 44544 33 24788889988877777777666654
No 259
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.26 E-value=0.85 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=40.7
Q ss_pred cCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933 8 LTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 8 ~~g~~~~~~v~~~-~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+|+. +++..+ .||.+|.+.+ ++++..-....||..+.. ..+.+..+.+++++.++...
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEEC
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEccc
Confidence 35654 445676 8999999886 566665556678866643 34556678999999887543
No 260
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.08 E-value=1.1 Score=31.00 Aligned_cols=61 Identities=34% Similarity=0.513 Sum_probs=42.7
Q ss_pred ceEEEEeeccccHHHHHHHhchhc----CCCC----CceEEEEC-C---eecCC----------C----CcccccCCCCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKE----GIPP----DQQRLIFA-G---KQLED----------G----RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~----gi~~----~~~~L~~~-g---~~L~d----------~----~~L~~~~i~~g 216 (230)
+.+++.+-..+||.++|++|-... |.|. +.+.|-|. | ..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468888889999999999987642 6543 44555541 2 22222 1 37889999999
Q ss_pred CEEEEEE
Q 026933 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~l~~ 223 (230)
+++-++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998764
No 261
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=90.67 E-value=1.2 Score=28.79 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=44.5
Q ss_pred CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCceeEEecCccccCCcccccccc
Q 026933 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------p-------~~~q~l~~~g~~l~d~~~l~~~~i 61 (230)
|+|+|+... |....++. +..||.+|...+...+.- . ...-.+..||+...... -.++.+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~-~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG-GLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT-GGGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC-CCCcCC
Confidence 788888653 43335664 578999999999887620 0 01234556776655322 235668
Q ss_pred ccCCeEEEEEEe
Q 026933 62 QKESTLHLVLRL 73 (230)
Q Consensus 62 ~~~~~i~l~~~~ 73 (230)
.+++++.++...
T Consensus 79 ~~gDeV~i~Ppv 90 (93)
T 3dwg_C 79 ADGDSVTILPAV 90 (93)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEECCC
Confidence 899998887654
No 262
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.45 E-value=1.3 Score=35.72 Aligned_cols=74 Identities=11% Similarity=0.127 Sum_probs=56.4
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE--CCe--ecCCCCcccccCCCCCCEEEEEEEe
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~--~g~--~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
..+.+.|...+| ++.+++++.+|+.++-..|+...|+.... +-|.+ .+. -|+.++++.+.+++.+....+.+|.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 345677777888 78899999999999999999999987644 44544 343 3788889999887777766666654
No 263
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=90.24 E-value=0.7 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=44.5
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCC-CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+......||.+|-+. .+++ +....+..||..+..+ ...+.-+++|+.|.++....||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 566555432256899998765 4777 7778888999877543 5667789999999887544443
No 264
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.17 E-value=0.95 Score=28.91 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=28.4
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
..++..+.+.|+++.+..+|+.+|..+..+.
T Consensus 18 yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 18 YYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4478899999999999999999999999994
No 265
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.15 E-value=2.1 Score=29.51 Aligned_cols=60 Identities=35% Similarity=0.494 Sum_probs=42.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh----CCCCC----ceeEEe-cC---ccc----------cC----CccccccccccC
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKE----GIPPD----QQRLIF-AG---KQL----------ED----GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~----gip~~----~q~l~~-~g---~~l----------~d----~~~l~~~~i~~~ 64 (230)
..+++.|-.-+||.++|+||-+.. |.|.+ ...|-| .| ..| ++ =.||+.|++.++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468899999999999999987763 77753 334444 22 112 22 157889999999
Q ss_pred CeEEEE
Q 026933 65 STLHLV 70 (230)
Q Consensus 65 ~~i~l~ 70 (230)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998775
No 266
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.14 E-value=1.6 Score=26.94 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=38.3
Q ss_pred EEeeccccHHHHHHHhchhcCCCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
+++ +..||.+|.+.+....++.. ....+..+|....+ .+.-+++||.|.+.--..||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 555 56899999999987543322 44566677766432 35568999999777655544
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.06 E-value=1.4 Score=28.51 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=36.0
Q ss_pred EEEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEecC
Q 026933 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 47 (230)
Q Consensus 3 v~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~g 47 (230)
|+||. .+|....+.++++.+..+|.+++.+.+++++.+ -.+.|..
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 45553 478999999999999999999999999998655 3445653
No 268
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.63 E-value=0.34 Score=33.97 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.7
Q ss_pred EeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe
Q 026933 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
..+.|..++|+.+|+..|++.+|+|++.|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 356888899999999999999999999999873
No 269
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.50 E-value=0.69 Score=28.78 Aligned_cols=60 Identities=7% Similarity=0.145 Sum_probs=43.0
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+ ...|+.+|-+. .++++....+..||..+.. ....+.-+++|+.|.++....||
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 5665554 56899998764 6888888888899987743 24556778999999887544433
No 270
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.36 E-value=1.6 Score=38.54 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.9
Q ss_pred ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEEC---C--eecCCCCcccccCCCCCCEEEEEEEe
Q 026933 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
.+.+.|...+| ++.+.+++.+|+.+|-..|+...|+... .+-|.|. | .-|+.++++.+.+++.+....+.+|.
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 35667777777 6789999999999999999999998654 3455542 2 35777889988888777777776664
No 271
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.34 E-value=0.6 Score=29.05 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=44.3
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+.+. + +..|+++|-+. .++++....+..+|..+.. ....+.-+++||.|.++--..||.
T Consensus 6 NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 455444 4 56899998764 4778888888899988763 356677899999998877665553
No 272
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=89.32 E-value=0.99 Score=27.09 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=41.1
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+.+ ++ +..|+.+|.+.+ ++++....+..+|.....+ ...+.-+++||.|.++- +.+||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~-~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA-LMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE-CCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe-ecccC
Confidence 45544 34 568999998876 4566777777888877533 34456789999998876 44444
No 273
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=89.13 E-value=0.63 Score=28.17 Aligned_cols=57 Identities=12% Similarity=0.210 Sum_probs=40.5
Q ss_pred EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+++....|+.+|.+.+ ++++....+..+|.....+ ...+.-+++||.|.++- +.+||
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~-~V~GG 66 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ-VIAGG 66 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE-SCCCC
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe-ecccC
Confidence 4556678999998876 4667777777888877532 23456689999998776 44444
No 274
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.01 E-value=1.7 Score=27.78 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=42.7
Q ss_pred ceEEEEeeccccHHHHHHHhchhcC-C-----C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i-----~-----~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
....++++...||.+|.+.+...+. + . .....+..+|+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567788778899999999988752 1 1 122566688877654 4568999999776645444
No 275
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=88.28 E-value=0.49 Score=29.90 Aligned_cols=62 Identities=15% Similarity=0.325 Sum_probs=45.4
Q ss_pred cCceEEEEee--ccccHHHHHHHhchhcCCC-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 161 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 161 ~~~~~~~~v~--~~~tV~~LK~~i~~~~gi~-~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+|+.+ +++ ...|+.+|-+.+ +++ +....+-.+|..+.. ....+.-+++||.|.++--..||.
T Consensus 6 NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 45544 444 568999987644 677 777778899988864 356678899999998887666664
No 276
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=88.16 E-value=1.1 Score=28.12 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=39.5
Q ss_pred eEEEEeeccccHHHHHHHhchhcC-----CCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~g-----i~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...++ .+..||.+|.+.+..... ++.....+..+|+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34455 456799999999876642 23344567788877642 5568999999776544443
No 277
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=87.96 E-value=2.3 Score=27.12 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=34.7
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecC
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g 123 (230)
..|+|.+. .++..|.+.|+.+.+..+|+.+|.++..+. ...+. |++
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF 57 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence 34566664 345689999999999999999999999883 44444 543
No 278
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.83 E-value=1.6 Score=27.91 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=42.3
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhC-C-----C-----CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~-i-----~-----~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++...||++|.+.+..++. + . .....+..||+.... +.-+++|+.|.++....|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCC
Confidence 5567888888899999999988763 1 1 022567788877764 456888999987754443
No 279
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.78 E-value=2.3 Score=27.52 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=37.4
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEecCcc
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~ 125 (230)
|+|.+. .+|..+.+.++++.+..+|.+++.+.++++.. ...+.|....
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 445543 45678888999999999999999999998754 4788887643
No 280
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=87.04 E-value=3 Score=34.39 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc--ccCCcccccccc
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNI 61 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~--l~d~~~l~~~~i 61 (230)
.-....+.+++..|+.++++++++.++++++.|.|.+.+.. ++....-..|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 34567789999999999999999999999999999998733 333444444443
No 281
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=86.65 E-value=0.79 Score=41.26 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-CccccCCcccccc
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~l~d~~~l~~~ 59 (230)
.+....+.++++.|+.+++..|++.+|||++.|.+.+. |..+++......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45667889999999999999999999999999999985 5666666565554
No 282
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=86.45 E-value=2.7 Score=25.57 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=39.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+++|...+|+. .++..+.|+.++-..+....+ ...-....+|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889998888886 567789999999888754332 1112223677655544 444556666654
No 283
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=86.17 E-value=3.8 Score=32.47 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=52.0
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCC-eEEEe---cCc--ccCCCcchhhcccccCCceEEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~---~g~--~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
+.+.|...+| ++.+.+++++|+.++-..|++..|+.... .-|.+ +|. -|+.++++.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 5677777887 67899999999999999999999976543 46665 232 367778888876655555555443
No 284
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=85.98 E-value=1.5 Score=27.49 Aligned_cols=58 Identities=3% Similarity=0.083 Sum_probs=39.3
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhC-----CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
....++ ....||.+|.+.+...+. ++.....+..||+.... +..+++|+.|.++....
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCC
Confidence 345666 567799999999876542 23344567788877643 45688999987764433
No 285
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=85.83 E-value=1.1 Score=27.83 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=40.2
Q ss_pred eEEEEeeccccHHHHHHHhchhcCCCCCce--EEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~--~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
...+++....||.+|.+.+..... ..... .+..+|+.... +.-+++||.|.+.- +.+||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p-pv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP-PVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC-SCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC-CCCCC
Confidence 456666677899999999877642 01233 66788887764 35689999997755 45544
No 286
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=85.57 E-value=1.5 Score=27.13 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=39.4
Q ss_pred cEEeeccCccCcHHHHHHHHhhHhCCCCCCe--EEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
....++++...||.+|.+.+...+. ..... .+..||+....+ .-+++|+.|.++..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence 4467777788899999999877642 11233 677888877643 56889999877643
No 287
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.77 E-value=4.4 Score=35.64 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=46.4
Q ss_pred CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~----~g~-~L~d~-------------~~L~~~~i~~ 215 (230)
.+.+++.|-..+||.++|++|-... |.| ++.+.|-| .|+ .|.|. .||++|+|++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568899999999999999998764 433 45566665 233 34331 3899999999
Q ss_pred CCEEEEEEEec
Q 026933 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 g~~i~l~~~~~ 226 (230)
|+++.++-+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987653
No 288
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.63 E-value=5 Score=35.35 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=45.9
Q ss_pred ceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEEC----Ce-ecCCC-------------CcccccCCCCC
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~~----g~-~L~d~-------------~~L~~~~i~~g 216 (230)
+.+++.|-..+||.++|++|-... |.| ++.+.|-|. |+ .|.|. .||++|+|++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 468899999999999999998643 443 355666652 23 35442 48999999999
Q ss_pred CEEEEEEEec
Q 026933 217 STLHLVLRLR 226 (230)
Q Consensus 217 ~~i~l~~~~~ 226 (230)
+++.++-+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9998876643
No 289
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.49 E-value=3.9 Score=32.79 Aligned_cols=74 Identities=11% Similarity=0.127 Sum_probs=54.8
Q ss_pred cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEe--cC--cccCCCcchhhcccccCCceEEEEE
Q 026933 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AG--KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~--~g--~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
...+.+.|...+| ++.+.+++++|+.++-..|++..|+... ..-|.+ +| .-|+.++++.+.+...+....+..+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3457788888898 7889999999999999999999997653 346655 33 2367788888877665555544443
No 290
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.36 E-value=6.8 Score=26.50 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=38.0
Q ss_pred cEEeeccCc---cCcHHHHHHHHhhHhC-CC---------CC-CeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933 87 KTITLEVES---SDTIDNVKAKIQDKEG-IP---------PD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~~~v~~---~~tV~~lK~~i~~~~~-i~---------~~-~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 152 (230)
+.+.++++. ..||.+|...+.+++. .. .. ...+..|+...+-- -=.++-+++|+.|.++....+|
T Consensus 30 ~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 30 KKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp SEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTTTCBCCSSEEEEEEECSCCC
T ss_pred eEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCcCcCCCCCCEEEEeCCCCCC
Confidence 356677773 3699999999998861 10 11 12233444321100 0134678899998887666665
No 291
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=84.31 E-value=3.7 Score=26.31 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred EEEeeecCc-eEEEEeec-cccHHHHHHHhchhcCCCCCceEEE-ECC---eecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 155 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~-~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~-~~g---~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
++.+..+.+ .-.+.++. ..+|.+||++|..+.++.....-|. ++. ++..|+ ..-|..++.|.+...+.+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd----~~lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD----NALIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECST----TCEEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCC----ceEEecCCEEEEEeccCcc
Confidence 344444443 34577774 5699999999999887765566554 443 333333 2347788888776667665
Q ss_pred C
Q 026933 229 G 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 85 ~ 85 (86)
T 2c7h_A 85 V 85 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 292
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=83.70 E-value=1.6 Score=26.34 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=40.2
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 149 (230)
+|+.+ +++...|+.+|.+.+ ++++....+..||...... ...+.-+++|+.|.++...
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56544 556778999998876 5677777777888776431 2334568899999877543
No 293
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.58 E-value=2.3 Score=28.88 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=43.5
Q ss_pred CEEEEEccC------C--cEEEEEecC---CCcHHHHHHHhhhhhCCCCCceeEEec-Ccc------ccCCcc--c---c
Q 026933 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ------LEDGRT--L---A 57 (230)
Q Consensus 1 m~v~v~~~~------g--~~~~~~v~~---~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~------l~d~~~--l---~ 57 (230)
|+|+|+... | +.+.++++. .+||.+|-..+.+.+ |..+.+|+.. |.. +-++.. + .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678888654 3 366788883 369999999999887 2223333322 211 111221 1 3
Q ss_pred ccccccCCeEEEEEEecC
Q 026933 58 DYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~ 75 (230)
++.+.+++++.++....+
T Consensus 90 dt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHG 107 (114)
T ss_dssp TCBCCSSEEEEEEECSCC
T ss_pred CcCCCCCCEEEEeCCCCC
Confidence 467888898777654433
No 294
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=82.82 E-value=1.6 Score=26.11 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=39.8
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
.+|+.+.+ ...||.+|.+.+ ++++....+..||.....+ ...+.-+++|+.|.++....
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~ 62 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQ 62 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecc
Confidence 36666544 567999998876 4666677777888776432 23345688999998775433
No 295
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.66 E-value=6.3 Score=26.22 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=48.4
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcc--cCCCcchhhcccccCCceEEEEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
+...|...+...+.+.++.+.|+.+++..++++.+...+.+.|. ++|.. |+++..--.-.+.-++.+++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33444455666788899999999999999999999877677776 56733 44443332333555566655543
No 296
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=82.40 E-value=0.41 Score=30.10 Aligned_cols=54 Identities=9% Similarity=0.217 Sum_probs=38.3
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+++++..||.+|.+.+. +++....+..+|+....+ .-+++||.|.++- +.+||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p-pv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP-VVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC-CCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc-ccccC
Confidence 445566789999987764 566667777899877653 5689999997665 44443
No 297
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=82.32 E-value=8.1 Score=25.18 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=41.3
Q ss_pred CEEEEEccC-------C-cEEEEEec--CCCcHHHHHHHhhhhhCCC-CCc------e------eEEecCccccCCcccc
Q 026933 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------Q------RLIFAGKQLEDGRTLA 57 (230)
Q Consensus 1 m~v~v~~~~-------g-~~~~~~v~--~~~tv~~lK~~i~~~~gip-~~~------q------~l~~~g~~l~d~~~l~ 57 (230)
|+|+|+... | +...+++. ++.||++|...+.+.+.-. +.. . .+..|+...+-. .=.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEK 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCC
Confidence 578887643 2 45667777 7899999999998876311 110 0 122344321100 013
Q ss_pred ccccccCCeEEEEEE
Q 026933 58 DYNIQKESTLHLVLR 72 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~ 72 (230)
++.+.+++++.++..
T Consensus 81 d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 81 DYILEDGDIISFTST 95 (99)
T ss_dssp GCBCCTTCEEEEEEC
T ss_pred CcCcCCCCEEEEECC
Confidence 456888898877644
No 298
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.79 E-value=8 Score=24.76 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=39.9
Q ss_pred EEEeeccccHHHHHHHhchhcC-----C-C-------CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEG-----I-P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~g-----i-~-------~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
.++. +..||.+|.+.+..++. + . .....+..+|....+..-+ +.-+++||.|.++--..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 4554 45799999999988752 0 1 1135666788766543222 4568999999777655554
No 299
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.48 E-value=7.9 Score=25.74 Aligned_cols=66 Identities=9% Similarity=0.211 Sum_probs=49.4
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecC--ccccCCccccccccccCCeEEEEEEe
Q 026933 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+..-+++.+..+.|+.+++..+.++.+...+.+.|. ++| ..++++..--.-.+.-+.++++..+.
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3556778999999999999999999999887778877 456 33555544444556667788777654
No 300
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.99 E-value=6 Score=34.81 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=53.9
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEec---C--cccCCCcchhhcccccCCceEEEEE
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~---g--~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.+.+.|...+| ++.+.+++++|+.+|-..|+...|+... .+-|.+. | ..|+.+.++.+.++..+..+.+..+
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 46778888888 6789999999999999999999998643 4566653 2 3466778888877666666555444
No 301
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=80.83 E-value=1.9 Score=28.48 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
+..+.+.|+++.+..+|..+|.++++++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 6689999999999999999999999886
No 302
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=80.69 E-value=4.7 Score=25.58 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=39.4
Q ss_pred EEEeeccccHHHHHHHhchhcC------C-----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~g------i-----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.++++...||.+|.+.+..... + ......+..+|+..... .-.+.-+++||.|.++- +.+||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p-pv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP-PVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC-CTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC-CCCCC
Confidence 3455556899999999887741 1 11445666888766422 12345689999997765 44444
No 303
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=80.65 E-value=0.68 Score=29.02 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=36.5
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 148 (230)
.++++...||.+|.+.+ +++.....+..||+....+ .-+++|+.|.++..
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence 45667778999988765 4677777777899887654 56788998876543
No 304
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=80.43 E-value=4.1 Score=32.52 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=52.0
Q ss_pred cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEEC---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026933 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
..+.+.|...+|....+++++.+|+.+|-..|+.+.|+.... +-|.+. | .-|+..+++.+........+.+.++
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 346678888899999999999999999999999999986544 445432 2 3467778887765444445544433
No 305
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=79.93 E-value=9.3 Score=33.64 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=45.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh--CCCC------CceeEEec-C---c-cccC-------------CccccccccccC
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gip~------~~q~l~~~-g---~-~l~d-------------~~~l~~~~i~~~ 64 (230)
...++.|-.-+||.++|+||-+.. |.|. +...|-|. | + .|.| =.||++|++.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 568899999999999999998763 5554 33445552 2 2 2332 268999999999
Q ss_pred CeEEEEEEe
Q 026933 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987654
No 306
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.47 E-value=6.4 Score=34.70 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=45.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh--hCCCCC------ceeEEec-C---c-cccC-------------CccccccccccC
Q 026933 11 KTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~--~gip~~------~q~l~~~-g---~-~l~d-------------~~~l~~~~i~~~ 64 (230)
...++.|-.-+||.++|+||-+. -|.|.+ ...|-|. | + .|.| =.||++|++.++
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 35889999999999999999865 356653 3345552 2 2 2333 268999999999
Q ss_pred CeEEEEEEe
Q 026933 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 307
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=79.34 E-value=9.9 Score=24.80 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=41.4
Q ss_pred CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhC-CCCC---------ce-------eEEecCccccCCcccc
Q 026933 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTLA 57 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~---------~q-------~l~~~g~~l~d~~~l~ 57 (230)
|+|+|+... |. -.++++ ..||.+|.+.+...+. +... .- .+..||+..... .-.
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGL 80 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TST
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCC
Confidence 678888765 32 123444 6899999999887741 1110 11 455677655322 223
Q ss_pred ccccccCCeEEEEEE
Q 026933 58 DYNIQKESTLHLVLR 72 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~ 72 (230)
++.+.+++++.++..
T Consensus 81 ~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 81 ETLLKDSDEIGILPP 95 (99)
T ss_dssp TSCCCTTEEEEEECC
T ss_pred CCCCCCCCEEEEECC
Confidence 456788888877643
No 308
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.29 E-value=4.5 Score=26.74 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=43.7
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCe-EEE-ec-----CcccCCCcchhhc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~~-----g~~L~d~~~l~~~ 135 (230)
+..-|.|...+|....+.|++++|++++-+.+..+.+...+.- .|+ +. -+.++|...+-+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 3455777788999999999999999999999999988654332 332 11 2456776665554
No 309
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=77.24 E-value=1.7 Score=29.41 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=43.3
Q ss_pred CEEEEEccC------CcEEEEEecC----CCcHHHHHHHhhhhhCCCCCceeEEec-C--c------cccCCccc-----
Q 026933 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRTL----- 56 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~----~~tv~~lK~~i~~~~gip~~~q~l~~~-g--~------~l~d~~~l----- 56 (230)
|+|+|+..+ |+...++++. .+||.+|=..+.+.+ |..+.+|+.. | . .|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 667777654 4555677773 359999998888876 2224444433 3 1 12223222
Q ss_pred cccccccCCeEEEEEEecC
Q 026933 57 ADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~ 75 (230)
.+|.+.+++++.++....+
T Consensus 83 ldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp SCCCCCSSCEEEEEECCCC
T ss_pred cccCCCCcCEEEEeCCCcc
Confidence 2466888888777554433
No 310
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=77.09 E-value=11 Score=23.63 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=51.3
Q ss_pred EEEeeccccHHHHHHHhchhcCCCCCceEEEE-CCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~-~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.+.|......-.+-+-.++++.+|+....++. .|.-.++.++-...-++.|+.+.+.-|-+=|+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 45677777677777778888899998888884 55667889999999999999999998866665
No 311
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=75.77 E-value=2 Score=29.01 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=41.4
Q ss_pred eeeEEEccC------CcEEeeccCc----cCcHHHHHHHHhhHhCCCCCCeEEEe-cC--c------ccCCCcch-----
Q 026933 77 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF-AG--K------QLEDGRTL----- 132 (230)
Q Consensus 77 ~~v~v~~~~------g~~~~~~v~~----~~tV~~lK~~i~~~~~i~~~~q~L~~-~g--~------~L~d~~~l----- 132 (230)
|+|.|+... |+...++++. ..||.+|-..+.+.+. ..+-+|+- +| . .|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 555665543 3445677773 3599999999988752 11222221 11 0 12122222
Q ss_pred hhcccccCCceEEEEEeecce
Q 026933 133 ADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+|-+++|+.|.++....+|.
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246789999987776666654
No 312
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=75.57 E-value=14 Score=25.09 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=49.6
Q ss_pred ceEEEEeeccccHHHHHHHhchhc--------CCCCCceEEEECCeec--CCCCcccccCCCCCCEEEEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKE--------GIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~--------gi~~~~~~L~~~g~~L--~d~~~L~~~~i~~g~~i~l~~ 223 (230)
..+.+-+++.++.++|-+.+-.-. .|+-+...+..+|+.. +.+++|.+.|+..-|.|++.-
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~T 108 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTT 108 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEEC
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeC
Confidence 457899999999999987776543 3667777888999876 678999999999999988753
No 313
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=75.56 E-value=4.5 Score=32.26 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=46.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEec---C--ccccCCccccccc
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYN 60 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~---g--~~l~d~~~l~~~~ 60 (230)
|.+.|..++|....+.|++.+|+.||=..|.+..|+.... --|.+. | .-|+.++.+.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 5688999999999999999999999999999999998533 345543 2 2255566666543
No 314
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=72.31 E-value=15 Score=30.16 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=40.8
Q ss_pred CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc--cCCCcchhhcc
Q 026933 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYN 136 (230)
Q Consensus 85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~--L~d~~~l~~~~ 136 (230)
......+.+.+..|+.++++.+++.++++++.|.|.+.+.. ++...+-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 44556778889999999999999999999999999998733 34444455544
No 315
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=71.84 E-value=7.3 Score=26.87 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=35.5
Q ss_pred cccHHHHHHHhchhcCCCC-------CceEEEECCeec-CCCCcccccCCCCCCEEEEE
Q 026933 172 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tV~~LK~~i~~~~gi~~-------~~~~L~~~g~~L-~d~~~L~~~~i~~g~~i~l~ 222 (230)
..|..+|-+.+..++|... ..++|+|.--.= .-.++|.+.|+++|+.+.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4688998877877777643 234555544221 23589999999999998775
No 316
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=71.77 E-value=15 Score=23.21 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=45.8
Q ss_pred eeccCccCcHHHHHHHHhhHh-C--CC--CCCeEEEecCcc--cCCCcchhhcccccCCceEEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i~--~~~q~L~~~g~~--L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
-+.|+..+|+.++=++++... | ++ +...+..++|.. +.++.++++.||.+-+.|.+..
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 467888999999988887753 3 22 235678899987 9999999999999998887653
No 317
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=71.60 E-value=16 Score=23.03 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.9
Q ss_pred eeccCccCcHHHHHHHHhhHh-C--C---CCCCeEEEecC--cccCCCcchhhcccccCCceEEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~-~--i---~~~~q~L~~~g--~~L~d~~~l~~~~i~~~~~i~l~~ 147 (230)
-+.|+..+|+.++=++++... | + |....+..++| +.+..+.|+++.||.+-+.|.+..
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 467889999999999887753 3 3 22346777888 889999999999999988887654
No 318
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=70.93 E-value=5.4 Score=26.25 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=42.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCC-----------ceeEEecC-ccccC------CccccccccccCCeEEEE
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~-----------~q~l~~~g-~~l~d------~~~l~~~~i~~~~~i~l~ 70 (230)
....+++++++|..++-..+.+.-.+... ...|++.+ ..|+. +++|.+.|+.++..|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35578999999999999999885433222 35566654 23332 477999999999988774
No 319
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=70.30 E-value=5.4 Score=26.24 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.9
Q ss_pred CcEEeeccCccCcHHHHHHHHhhHhCCC
Q 026933 86 GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 86 g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
+..+.+-|+++.+..+|..+|.++.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4568899999999999999999999865
No 320
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.01 E-value=4.4 Score=36.42 Aligned_cols=51 Identities=29% Similarity=0.593 Sum_probs=42.0
Q ss_pred cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEE-CCeecCCCCccccc
Q 026933 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 211 (230)
Q Consensus 161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~-~g~~L~d~~~L~~~ 211 (230)
..+...+.+.+..|+.+++..|++.+|++++.|.+++ .|..+++......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4566788999999999999999999999999999985 45566766666654
No 321
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=69.71 E-value=18 Score=22.69 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=50.3
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhcccccCCceEEEEEee
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 150 (230)
.+.|++.+....+-+-.++++.+|+....++. .|.-++..++-...=++.|+.+.+..|.+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 45788888888888889999999998887775 46778888888888889999998876654
No 322
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=68.77 E-value=9.9 Score=26.20 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=35.6
Q ss_pred cCcHHHHHHHHhhHhCCCC-------CCeEEEecCcccCC--CcchhhcccccCCceEEEE
Q 026933 96 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~i~~-------~~q~L~~~g~~L~d--~~~l~~~~i~~~~~i~l~~ 147 (230)
..|..+|-..+..++|.+. ..++|+|.- ..+| +++|++.|+++|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEEc
Confidence 4689998888888888753 123444432 1222 6899999999999887664
No 323
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=68.64 E-value=19 Score=22.70 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=47.5
Q ss_pred EEEEeeccccHHHHHHHhchhc-C--C--CCC-ceEEEECC--eecCCCCcccccCCCCCCEEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKE-G--I--PPD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-g--i--~~~-~~~L~~~g--~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
.-+.++..+|+.++=++++-.. | + +|. ..+..++| ..+..+.|+.+.||.+=+.|.+.+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4577888999999988887754 4 2 222 46677888 8899999999999999999988763
No 324
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=68.08 E-value=20 Score=22.65 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=47.3
Q ss_pred EEEEeeccccHHHHHHHhchhc-CC--C--CCceEEEECCee--cCCCCcccccCCCCCCEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~-gi--~--~~~~~L~~~g~~--L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
.-+.++..+|+.++=++++... |. + |...+..++|.. +..+.++++.|+++=+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4577888999999988887754 42 2 235677789987 8999999999999999998875
No 325
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=67.66 E-value=23 Score=23.19 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=55.7
Q ss_pred EEEEEccCC---cEEEEEecCCCcHHHHHHHhhhhhCCCCC--ceeEEecCc---cccCCccccccccccCCeEEEEE
Q 026933 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gip~~--~q~l~~~g~---~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+|..++. ...+++|.-+.-|+-+-.++-+...++.+ +-.|.+..+ .+....||-.||+..++.++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 688888664 56889999999999999999988888753 455666443 36778999999999999988754
No 326
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=67.22 E-value=20 Score=22.44 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=36.8
Q ss_pred EEEecCCCcHHHHHHHhhhhhC------C-----CCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g------i-----p~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.+++..+.||.+|.+.+..... + ....-.+..||+..... ...++.+.+++++.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC
Confidence 3566667899999999887642 1 11233456788766532 23455688899987754
No 327
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.69 E-value=11 Score=24.78 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=40.8
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCC-----------CeEEEecC-cccC------CCcchhhcccccCCceEEE
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~-----------~q~L~~~g-~~L~------d~~~l~~~~i~~~~~i~l~ 146 (230)
...++++++.|..+|-..+++.-.+... ...|+..+ ..|+ -+++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4578899999999999999985443222 33444433 2232 2567899999999988774
No 328
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=65.14 E-value=16 Score=23.30 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=36.8
Q ss_pred EEEEccCCc-EEEEEe-cCCCcHHHHHHHhhhhhCCCCCceeEE-ecC---ccccCCccccccccccCCeEEEEEEe
Q 026933 3 IFVKTLTGK-TITLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~-~~~~~v-~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+-|--..+ ..++.+ +.+.+|.|||++|-.+.++-..+--|. ++. ++-.|+.. -|..++.+-+.-.|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~----lIprnssViVrRvP 81 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNA----LIPKNSSVIVRRIP 81 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTC----EEETTCCEEEEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCce----EEecCCEEEEEecc
Confidence 344433333 334555 456799999999999888764443443 442 22333322 25556665554333
No 329
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=64.84 E-value=9.8 Score=24.72 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-eEEecCcc
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q-~l~~~g~~ 49 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46899999999999999999999999998764 44466643
No 330
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=63.99 E-value=19 Score=24.56 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=43.9
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC------CeEEE---ecCcc--cCCCcchhhcccccCCceEE
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~------~q~L~---~~g~~--L~d~~~l~~~~i~~~~~i~l 145 (230)
+...|...+...+.+.+..+.|+.+++..++++.+..-+ .+.|. ++|.. |+++..--.-.+.-++.+++
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 334444556666778888999999999999999987543 66665 67743 34433222223444555554
Q ss_pred E
Q 026933 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
.
T Consensus 90 c 90 (120)
T 2dhz_A 90 C 90 (120)
T ss_dssp E
T ss_pred e
Confidence 4
No 331
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=63.88 E-value=16 Score=24.07 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=44.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe--c-----CccccCCcc----ccccccccCCeEEEE
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--A-----GKQLEDGRT----LADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~--~-----g~~l~d~~~----l~~~~i~~~~~i~l~ 70 (230)
|.|=..+|...++.|++.+|++|+=+.+..+.+.....-.-.+ . -+.++|+.. ++.+.+..++++...
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~ 90 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFR 90 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEEC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEe
Confidence 4444578999999999999999999999988886644332212 1 144666533 334445555554443
No 332
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=63.60 E-value=7.9 Score=24.20 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
..+++.|+++.+..+|..+|..+++..
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 467899999999999999999999975
No 333
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=60.84 E-value=11 Score=24.06 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+++.|++.+|=.++|+.|+..+++.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999986543
No 334
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=60.51 E-value=25 Score=30.56 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=45.0
Q ss_pred CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC--CCeEEEecC----cccCCCcchhh
Q 026933 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG----KQLEDGRTLAD 134 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g----~~L~d~~~l~~ 134 (230)
.+.+.|...+|....+.+++.+|+.++-..|+++.|+.. +..-|.... ..|.++..+.|
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 467788889999999999999999999999999999874 456676532 12555555443
No 335
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=60.07 E-value=13 Score=26.95 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=41.0
Q ss_pred EEEeeccccHHHHHHHhchhcC-CC---------CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 166 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 166 ~~~v~~~~tV~~LK~~i~~~~g-i~---------~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
.++++. .||.+|.+.+...+. +. .....+..+|.......- .+.-+++||.|.++--..||.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 445555 899999999877641 10 234566688887764322 345699999998876566554
No 336
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=58.11 E-value=36 Score=22.25 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=51.0
Q ss_pred eeEEEccCC---cEEeeccCccCcHHHHHHHHhhHhCCCC--CCeEEEecC---cccCCCcchhhcccccCCceEEE
Q 026933 78 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g---~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
.|+|...+. ....+.|..+.-|+.+..++-+..+++- +.-.|-+.. ..+.-..||..||++.++.+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 456655443 4578888888999999999998877653 455666544 35678899999999999887654
No 337
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=57.40 E-value=29 Score=22.63 Aligned_cols=56 Identities=5% Similarity=0.083 Sum_probs=39.7
Q ss_pred ceEEEEeeccccHHHHHHHhch--h-cCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQD--K-EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~--~-~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
..+.+++.+..||.++-+...- . ..++.+...+..+|+... .+.-+++||.|.++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 3567888899999999777653 2 245555667777777665 455588999998753
No 338
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=57.26 E-value=30 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=32.3
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCe-EEEecCcccCCCcchhhc
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~~l~~~ 135 (230)
+-|+.+.||+++...|..+..++++.- -|+.++.....+.++++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 456778899999999999999888764 343455544556666654
No 339
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=56.93 E-value=19 Score=23.29 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=33.1
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCe
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~ 200 (230)
..+.+.|++.+|-.++|+.|++.+++.+....-+ ..|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 5799999999999999999999999999887554 6664
No 340
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=56.78 E-value=27 Score=24.18 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=35.6
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCeec-CCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~~L-~d~~~L~~~ 211 (230)
-.+-|+.+.||+++..-|.++..++++.-.++ |.+..+ ..+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 35678999999999999999999988875555 666544 456666654
No 341
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=56.70 E-value=13 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCc
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~ 48 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-. +...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 378999999999999999999999999986643 445554
No 342
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.86 E-value=16 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 468999999999999999999999999986543
No 343
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=54.91 E-value=14 Score=24.15 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCcee-EEecCc
Q 026933 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~ 48 (230)
.+++.|++.+|=.|+|+.|+..+++.+..-. +...|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 3899999999999999999999999987644 334553
No 344
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.85 E-value=16 Score=23.59 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=33.5
Q ss_pred cHHHHHHHhchhcCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933 174 TIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 174 tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
+.++|+.+.+..++++.....|+ ..|.+++|+.-+..+ +..++.+++.
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 79999999999999976566665 468888776544433 4555555543
No 345
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=54.81 E-value=25 Score=30.58 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=34.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
|.+.|..++|....+.+++.+|+.||-..|....|+..
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 35778889999999999999999999999999999985
No 346
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=54.68 E-value=47 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=45.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh-hCCCCC-------ceeEEecCccccC--CccccccccccCCeEEEE
Q 026933 11 KTITLEVESSDTIDNVKAKIQDK-EGIPPD-------QQRLIFAGKQLED--GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~-~gip~~-------~q~l~~~g~~l~d--~~~l~~~~i~~~~~i~l~ 70 (230)
..+.+.++|+.|.+++-+++-.- ++..|+ .-.+..+|+.... +++|++.|+...|.|...
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 45789999999999998776543 454443 3456778888754 699999999998887665
No 347
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=54.63 E-value=20 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=36.4
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCc-eEEEECCeecCCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~g~~L~d~~~L~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++. ..|+.++.....+.++++.
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 3467899999999999999999998876 5666677755666777654
No 348
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=54.51 E-value=42 Score=23.16 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=39.4
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCccc-CCCcchhhccc---ccCCceEEEE
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~~l~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++...|.++..++++.--.+ |.+..+ ..+.++++.-= .++..+++..
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 118 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVY 118 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEE
Confidence 3458889999999999999999998876655 655544 44566665421 2344555543
No 349
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=53.93 E-value=41 Score=21.64 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=36.4
Q ss_pred eEEEEee--ccccHHHHHHHhchhcC-CCCC------------ceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933 164 TITLEVE--SSDTIDNVKAKIQDKEG-IPPD------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~--~~~tV~~LK~~i~~~~g-i~~~------------~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g 228 (230)
...+++. +..||.+|...+.+++. ..+. ...+..++..-+-... .++-+++||.|.+.--..||
T Consensus 21 ~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 21 VHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp EEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTCC
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCCC
Confidence 4556665 56899999999988762 1110 1223345542210001 25568999998776544443
No 350
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=51.36 E-value=26 Score=23.85 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCC------ceeEE---ecC--ccccCCccccccccccCCeEEEEEE
Q 026933 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~------~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+..-+++.+..+.|+.+++..+.++.+...+ .+.|. ++| ..|+++..--.-.+.-+.++++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4455678999999999999999999987654 67776 456 3345544333344555567666544
No 351
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=50.92 E-value=19 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +++|+.+.++++++.|+.++=+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (166)
T 1n62_A 5 HIEL-TINGHPVEALVEPRTLLIHFIREQ 32 (166)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHc
Confidence 4555 467999999999999999877664
No 352
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=49.41 E-value=21 Score=24.56 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=35.1
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCc-eEEEECCeecCCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~g~~L~d~~~L~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++. ..|+.++.....+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 3467889999999999999999998876 4555565544556677654
No 353
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=49.33 E-value=28 Score=23.13 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC--CCeEEEecC---cccCCCcchhhcccccCCceEEE
Q 026933 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~~l~~~~i~~~~~i~l~ 146 (230)
|+|...+ ...++.|..+.-|+.+..++-+..+++- +.-.|-+.. ..+.-..||..|||+.++.+++.
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 4444333 5678888888899999999988876543 344555433 45678889999999999877553
No 354
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=48.98 E-value=30 Score=24.76 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=25.8
Q ss_pred CEEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCC
Q 026933 1 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGI 36 (230)
Q Consensus 1 m~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 36 (230)
|...|+ +++|+.+.++++++.|+.++=+.....+|.
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~ 37 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGT 37 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTS
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHHcCCCccc
Confidence 443333 568999999999999999987765433333
No 355
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=48.63 E-value=61 Score=25.15 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=38.6
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe---c----CcccCCCcchhhc
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---A----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~----g~~L~d~~~l~~~ 135 (230)
..|.|...+|....+.|+++.|+++|-..+..+.....+.-..++ . -+.|+|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 346666788899999999999999999998887765433332222 1 2667787766554
No 356
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=48.42 E-value=14 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCC-----CCCeEEEecC
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 123 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g 123 (230)
.+.+.|+++.+..+|..+|.++.+.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46788999999999999999999865 2445555544
No 357
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=48.08 E-value=24 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.++.|+.+.=..
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5888889999999999999999886554
No 358
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=48.00 E-value=23 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=22.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +++|+.+.++++++.|+.++=+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (163)
T 1ffv_A 5 IITV-NVNGKAQEKAVEPRTLLIHFLREE 32 (163)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 4555 468999999999999999876664
No 359
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=47.92 E-value=36 Score=22.00 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=36.1
Q ss_pred EEeeccccHHHHHHHhchhcC-CCC---------Cce-------EEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933 167 LEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 167 ~~v~~~~tV~~LK~~i~~~~g-i~~---------~~~-------~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
++++ ..||.+|.+.+...+. +.. ... .+..+|....... -.+.-+++||.|.+.- +.+||
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~p-pv~GG 99 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILP-PVSGG 99 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEEC-CCSCC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEEC-CCCCC
Confidence 3444 5899999999887641 111 123 5667776553221 2345689999997765 44444
No 360
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=47.87 E-value=24 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|.|.+ +++|+.+.+++++++|+.++=+..
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~~ 38 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALREV 38 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHHT
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 44555 467999999999999999877653
No 361
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=47.86 E-value=39 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.1
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026933 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
.+=..+|-...++++.++|+.++|..+-++
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 333568999999999999999999987665
No 362
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=47.81 E-value=21 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=34.1
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCc-eEEEECCeecCCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~g~~L~d~~~L~~~ 211 (230)
-.+-|+.+.||+++..-|.++.+++++. ..|+.++.....+.++++.
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 3567788999999999999999988876 4554555544556666655
No 363
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=47.38 E-value=46 Score=20.68 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.1
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
+.+..++++.-.+++.+..|+.+--.+.-+.-|+.++.+..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 556677888889999999999999888888889999877766
No 364
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=47.30 E-value=27 Score=23.28 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC-C-------CCCCeEEEe-c--C--cccCC-Ccchhhcccc
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-I-------PPDQQRLIF-A--G--KQLED-GRTLADYNIQ 138 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i-------~~~~q~L~~-~--g--~~L~d-~~~l~~~~i~ 138 (230)
..+.|.+-.++|-.+.++++.+.|+.++|+.+-++.. . .++...+.. + | .++.| ++.|.+...-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 3455666678898899999999999999998877633 2 344444442 1 2 23544 4677775543
No 365
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=46.87 E-value=24 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCe
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~ 200 (230)
..+.+.|++.+|-.++|+.|++.+++.+....-+ ..|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 6799999999999999999999999998776554 5553
No 366
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.73 E-value=57 Score=21.17 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=39.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933 11 KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
..+.+++..+.||.++=+...-. ..|......+-.+|+... .++-+.+|+++.+.-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 46778999999999998875432 233444456778888776 455577889888763
No 367
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.22 E-value=50 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.9
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
.+.+..++++.-.+++.+..|+.+--.+..+.-++.++.+..+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3566778888889999999999999888888889999877776
No 368
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=45.96 E-value=23 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=22.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|.|.+ +++|+.+.++++|+.|+.++=+.
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~LR~ 31 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLLRE 31 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHHHT
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHHHH
Confidence 35666 56799999999999999987654
No 369
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=45.26 E-value=26 Score=23.06 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=31.9
Q ss_pred ccHHHHHHHhchhcCCCCC--ceEEE--ECCeecCCCCcccccCCCCCCEEEEEE
Q 026933 173 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 173 ~tV~~LK~~i~~~~gi~~~--~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~l~~ 223 (230)
.+.++|+.+.+..++++.+ ...|+ ..|.+++|+.-+... +..|+.+++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEE
Confidence 3799999999999999653 34444 578888776544443 344444443
No 370
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=44.85 E-value=22 Score=22.64 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
...+.+.|++..|-.++|+.+++.+++.+....-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 35799999999999999999999999988776654
No 371
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=44.84 E-value=32 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
|.+.|..++|....+.|++.+|+.|+=..|....|+...
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~ 302 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDR 302 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSC
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCccc
Confidence 457888999999999999999999999999999998753
No 372
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.13 E-value=48 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=30.0
Q ss_pred CcHHHHHHHHhhHhCCCCCCeEEEe--cCcccCCCcchhhc
Q 026933 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 135 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~~l~~~ 135 (230)
.+..+|+.+.++.++++....+|.. .|.+++|+.-+...
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL 68 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL 68 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC
Confidence 3799999999999999766667663 68888877655553
No 373
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=43.94 E-value=72 Score=21.53 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.3
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhc
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~ 135 (230)
.+-|+.+.||+++...|.++..+++++--.+| ++.....+.++++.
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 34588899999999999999999887654444 55444556666554
No 374
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=41.98 E-value=66 Score=20.57 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=32.8
Q ss_pred eeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCccc-CCCcchhh
Q 026933 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLAD 134 (230)
Q Consensus 90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L-~d~~~l~~ 134 (230)
.+-|+.+.|++++..-|.++..+++++--.+| ++.-+ ..+.++.+
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHH
Confidence 46688899999999999999999887654444 55433 44556554
No 375
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=41.94 E-value=68 Score=21.67 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=34.2
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCce-EEEECCeecCCCCccccc
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~-~L~~~g~~L~d~~~L~~~ 211 (230)
-.+-|+.+.||+++...|.++..++++.- .|+.++.....+.++++.
T Consensus 49 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 49 RKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 34668999999999999999999988664 444555444556666554
No 376
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=41.67 E-value=44 Score=22.67 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=33.9
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCe-EEEecCcccCCCcchhhc
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~~l~~~ 135 (230)
+-|+.+.||+++...|.++..+++++- -|+.++.....+.++++.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 458889999999999999999988764 444566644556666654
No 377
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=41.44 E-value=61 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.8
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q 41 (230)
|.|-..+|.+.++.|++..|..||-+.+....+++....
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 445566888999999999999999999999999876543
No 378
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=41.35 E-value=57 Score=29.11 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCC-CCCeEEEe
Q 026933 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~ 121 (230)
..+.+.|...+|....+.++..+|+.++-..|+.+.|+. .+..-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 457788888999999999999999999999999999964 44566765
No 379
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=41.31 E-value=32 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=22.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|+..++++.+++|+.+.=..
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~ 35 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQ 35 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHH
Confidence 4666667899999999999999876554
No 380
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=40.96 E-value=42 Score=26.49 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.8
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCe-EEE--ec----CcccCCCcchhhc
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI--FA----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~--~~----g~~L~d~~~l~~~ 135 (230)
+.+.|...+|....+.|++++|++++-+.+..+.+.+...- .|+ +. -+.|+|...+.+.
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 34566667888999999999999999998888887544333 332 21 1567777776654
No 381
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=40.72 E-value=17 Score=24.25 Aligned_cols=68 Identities=26% Similarity=0.414 Sum_probs=51.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC--ceeEEecCc---cccCCccccccccccCCeEEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK---QLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~--~q~l~~~g~---~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|+|..++ ...+++|.-+.-|+-+-.++-+...++.+ +-.|.+.-+ .+....||-.|||..++.++..
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 35554443 77889999889999999999988877753 345665443 3677899999999999887664
No 382
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=40.59 E-value=39 Score=23.19 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCccccCCcccc
Q 026933 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~l~d~~~l~ 57 (230)
+-|+.+.||+++...|.+...+++++-.++| ++.....+.+++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~ 100 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG 100 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHH
Confidence 4689999999999999999999997755555 543333344544
No 383
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=40.08 E-value=77 Score=20.75 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=35.1
Q ss_pred EEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.|.||.. .|++.-+.++.--+..||..++...+|-+. -|.|..
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n 51 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTN 51 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 4566654 688999999999999999999999999876 455543
No 384
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=39.28 E-value=34 Score=22.23 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecCc
Q 026933 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 124 (230)
Q Consensus 88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~ 124 (230)
.+.+.|++..|=.++|+.++..+++.+...+-. ..|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 389999999999999999999999999887544 5554
No 385
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.70 E-value=32 Score=21.86 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
...+.+.|++..|-.++|+.+++.+++.+....-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 35799999999999999999999999988776654
No 386
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=38.50 E-value=88 Score=20.99 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=37.2
Q ss_pred eccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhccc---ccCCceEEEE
Q 026933 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 91 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i---~~~~~i~l~~ 147 (230)
+-|+.+.||+++...|..+..+++++--.+| ++.....+.++.+.-= .++..+++..
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAY 109 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEE
Confidence 4577788999999999999998887643444 5554455666665421 2344555543
No 387
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=38.02 E-value=73 Score=25.11 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=44.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-------CccccCCcccc----ccccccCCeEEEE
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA----DYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-------g~~l~d~~~l~----~~~i~~~~~i~l~ 70 (230)
|.|=..+|.+.++.|++++|++||=+.+....+.+...-.-.|. -+.|.|+-.+. .+....++.+.+.
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 34445678999999999999999998888888766444333332 15567765443 3445555554444
No 388
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=37.62 E-value=69 Score=20.73 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=37.3
Q ss_pred eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
.+.+..++++...+++.+..|+.+--.+..+.-|+.++.+..+
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 4667778888899999999999999888888889999877776
No 389
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=37.19 E-value=45 Score=20.66 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=39.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|+|.+.+|..+ ++..++|+.|+=..|....|-.. ---..+|+..+-+ +.+.+++.+.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEE
Confidence 689999999764 67889999999888765554211 1223577655543 445666776664
No 390
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.70 E-value=37 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..-.
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 368999999999999999999999999986543
No 391
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=36.34 E-value=47 Score=20.12 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.5
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEee
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.+.+.-+.+.| ++.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 56889999999999888765445 455554
No 392
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=36.21 E-value=72 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=33.5
Q ss_pred eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCC
Q 026933 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116 (230)
Q Consensus 77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~ 116 (230)
+.+.|...+|....+.|+++.|+.++-..+..+.+++.+.
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 3466667788889999999999999999999999976654
No 393
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=35.73 E-value=44 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=22.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
.|++...+|+...+++.+++|+.+.=..
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~ 34 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQR 34 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 4556556899999999999999886544
No 394
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=35.26 E-value=34 Score=23.11 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=39.5
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCce-EEEECCeecCCCCcccccCC---CCCCEEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~-~L~~~g~~L~d~~~L~~~~i---~~g~~i~l~~~ 224 (230)
-.+-|+.+.||+++..-|.++..++++.- .|+.++.....+.++++..= .++.-+++...
T Consensus 47 ~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 47 RKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp CEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 34568889999999999999999888764 45455554455666765521 23445555543
No 395
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=35.05 E-value=57 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=22.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 5677657898899999999999887555
No 396
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=34.41 E-value=42 Score=23.55 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=28.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
+++.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 68899999999999999999999999986543
No 397
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=34.16 E-value=84 Score=19.48 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=34.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
|.+=.+++....++|-|+.|+.|-=.|.-+.-|+.|+.=..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 344456778888999999999999999999999998654444
No 398
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=33.85 E-value=44 Score=23.66 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+++.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 468999999999999999999999999986543
No 399
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=33.57 E-value=50 Score=21.11 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.9
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
++|+|+.+.. .++.+++...+-+..+=+++....++.++
T Consensus 6 YrITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~ 46 (88)
T 3cjl_A 6 YQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPE 46 (88)
T ss_dssp EEEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHH
T ss_pred EEEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHH
Confidence 3789987754 78999999999999999999888887763
No 400
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=32.84 E-value=62 Score=20.92 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~ 29 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARD 29 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5777777898899999999999886544
No 401
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=32.71 E-value=93 Score=20.30 Aligned_cols=86 Identities=5% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCc
Q 026933 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+...+.. +..+. ++=.. .+-.-+.|+...|.+.. - ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~g~~----------~~~~~v~i~~~~g~~~e--q-k~~l 76 (115)
T 1uiz_A 16 PDTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIMS-FGDST----------DPCAVCSLCSIGKIGGP--Q-NKSY 76 (115)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-ETTBC----------SSCEEEEEEESSCCSHH--H-HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChhHEEEEEEC-----CcceE-ECCCC----------CCeEEEEEEEecCCCHH--H-HHHH
Confidence 34457888888999999999988877632 11111 11011 12223444434433211 0 1123
Q ss_pred HHHHHHHHhhHhCCCCCCeEEEecC
Q 026933 99 IDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+..+-+.+++..|+|+++..+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 77 TKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 5666777888899999998887654
No 402
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=32.56 E-value=47 Score=20.83 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+-+.-+..-|+.|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566678999999999998888877777654
No 403
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=32.52 E-value=57 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~ 29 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVS 29 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5777677898899999999999886554
No 404
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=32.47 E-value=63 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEe
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+-++.++
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~ 54 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQIN 54 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999888765433233333
No 405
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=32.37 E-value=34 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=18.5
Q ss_pred CcccccCCCCCCEEEEEEEecCCC
Q 026933 206 RTLADYNIQKESTLHLVLRLRGGG 229 (230)
Q Consensus 206 ~~L~~~~i~~g~~i~l~~~~~~g~ 229 (230)
+.|.+.|+.+|+.|.+.-+..-||
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap~gg 47 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAPLGD 47 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECTTTC
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCC
Confidence 478888999999999887754444
No 406
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=31.35 E-value=61 Score=25.84 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=29.2
Q ss_pred CEEEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCC
Q 026933 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gip~~ 39 (230)
++|.|-.++|....++++. .+|+.|+- +..|++..
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~ 42 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQE 42 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCcc
Confidence 4788989999999999999 99999993 34788754
No 407
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=31.19 E-value=73 Score=20.36 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.5
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cC
Q 026933 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG 47 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g 47 (230)
..-|+.+.||+++...|..+.++++++-.+.| ++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 46789999999999999999999987665555 44
No 408
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=31.16 E-value=67 Score=21.85 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=22.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~ 50 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIR 50 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 5777667898899999999999886443
No 409
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=30.81 E-value=1.1e+02 Score=19.62 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=38.1
Q ss_pred EEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeec-CCCCcccccC--CCCCCEEEEEE
Q 026933 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L-~d~~~L~~~~--i~~g~~i~l~~ 223 (230)
-.+.++++.|++++-.-|.++..+ +...|+.++..+ ..+.++++.. -+++..+++..
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 357799999999999999999887 556666676543 4455665431 12455565554
No 410
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=29.76 E-value=57 Score=20.59 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
++|++...+| ..++++.+++|+.+.=..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3577766666 678999999999887655
No 411
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=29.11 E-value=72 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEee
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.|.+.-+.+.+-++.++.
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p~~gpi~v~v 58 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAPMGDPIALRL 58 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCSEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 468899999999998877654332333333
No 412
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=28.02 E-value=31 Score=20.71 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.9
Q ss_pred CcccccCCCCCCEEEEEEEec
Q 026933 206 RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 206 ~~L~~~~i~~g~~i~l~~~~~ 226 (230)
+.|.++|+.+|+.|.+.-+..
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 468889999999998877643
No 413
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.99 E-value=32 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=31.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-eEEecC
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAG 47 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q-~l~~~g 47 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..- .+...|
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g 169 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD 169 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC
Confidence 46899999999999999999999999997653 333444
No 414
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.83 E-value=47 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee
Q 026933 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+++.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 89 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 121 (152)
T 3iz5_X 89 NNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVN 121 (152)
T ss_dssp HSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEE
Confidence 368899999999999999999999999986543
No 415
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=27.32 E-value=68 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=21.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+| ..++++.+++|+.+.=..
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 567765667 778899999999887655
No 416
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=26.96 E-value=1.1e+02 Score=23.63 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=34.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-------CccccCCccc
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-------g~~l~d~~~l 56 (230)
|.|=..+|...++.|++.+|++||=..+..+.+.+...-...+. -+.|+|+-.+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 44445678999999999999999999988887765443333332 2667776444
No 417
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=26.61 E-value=1.4e+02 Score=19.70 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.0
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
+.+..++++.-.++|.+..|+.+--.+.-+.-|+.++.+..+
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 566777888889999999999999888888889998877766
No 418
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=32.10 E-value=14 Score=24.24 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=46.0
Q ss_pred cHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHH
Q 026933 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~ 101 (230)
....|++.|.+..+++++ .+.++..|.++|+.+=..+.+.......+.+.+... ++....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 456778888888887764 355666778888876666666666555444433211 1234458888
Q ss_pred HHHHHhhHh
Q 026933 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
|-..|.++.
T Consensus 91 l~~~I~~~~ 99 (103)
T 2lte_A 91 LFQLVEKHR 99 (103)
Confidence 877776543
No 419
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.03 E-value=47 Score=20.70 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=28.2
Q ss_pred HHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 179 K~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
|+.+-+++++.+++...+ +.++--..+||.++|+.|.+..+.
T Consensus 20 k~~lL~~y~i~~~qLPrI-----~~~DPvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 20 VEEILKRYNIKIQQLPKI-----YEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred HHHHHHHcCCCHHHCCee-----eCcCHhhHHhCCCCCCEEEEEECC
Confidence 345556667766655443 344455678899999999987763
No 420
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=25.44 E-value=1.4e+02 Score=19.30 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=36.7
Q ss_pred EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEEC
Q 026933 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~ 198 (230)
+.+..++++.-.++|.+..|+.+--.+.-+.-|+.++.+..+..
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 56667788888999999999999988888888998887776643
No 421
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.88 E-value=1.4e+02 Score=18.95 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.0
Q ss_pred eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE
Q 026933 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.+.+..++++.-.++|.+..|+.+--.+..+..++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3556678888889999999999998888888889988877666
No 422
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=24.29 E-value=43 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.6
Q ss_pred CcccccCCCCCCEEEEEEEec
Q 026933 206 RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 206 ~~L~~~~i~~g~~i~l~~~~~ 226 (230)
+.|.++|+.+|+.|.+.-+..
T Consensus 29 ~rL~~lGl~pG~~v~V~~~~p 49 (85)
T 3mhx_A 29 RRLRELGFVKGEEVRMVAKGP 49 (85)
T ss_dssp HHHHHTTCCTTCEEEEEESCS
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 468888999999998877643
No 423
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=24.07 E-value=1.6e+02 Score=19.39 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.3
Q ss_pred cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC--cccCCCcchhhc
Q 026933 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~~~l~~~ 135 (230)
..++.+.+...++-++.++-.-|-.++++..++..+...| ..|+-..++...
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l 78 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV 78 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh
Confidence 6788889999999999999999999999998887776655 445556555543
No 424
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=23.39 E-value=90 Score=19.74 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 3555544577888999999999887655
No 425
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=23.02 E-value=1.2e+02 Score=27.52 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=39.9
Q ss_pred eEEEEeeccccHHHHHHHhchhcC--CCC-C-------ceEEEECCe--e------cCCCCcccccCCCCCCEEEEE
Q 026933 164 TITLEVESSDTIDNVKAKIQDKEG--IPP-D-------QQRLIFAGK--Q------LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~~~v~~~~tV~~LK~~i~~~~g--i~~-~-------~~~L~~~g~--~------L~d~~~L~~~~i~~g~~i~l~ 222 (230)
...++++.+.|+.++-+.++.+.. +.. + ...++|... . -.-+++|.++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456788888899999888888643 322 1 134555432 1 123678999999999998774
No 426
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=22.98 E-value=59 Score=20.17 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 179 K~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~ 225 (230)
|+.+-+++++.+++... .+..+--..+||.++|+.|.+..+.
T Consensus 22 k~~lL~~y~i~~~qLP~-----I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 22 AKRVLKELDAHPEQLPK-----IKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp HHHHHHHTTCCTTTSCC-----CBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred HHHHHHHcCCCHHHCCe-----eeCcCHhhHHhCCCCCCEEEEEECC
Confidence 34555566776665443 3344455678899999999987764
No 427
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=22.91 E-value=80 Score=22.15 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred CcHHHHHHHHhhHhCCCCC--CeEEE--ecCcccCCCcchhhc
Q 026933 97 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADY 135 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~--~q~L~--~~g~~L~d~~~l~~~ 135 (230)
.+..+|+.+.++.++++.+ ..+|. ..|.+++|+.-+...
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL 124 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC
Confidence 4799999999999999763 55665 468888877665553
No 428
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=22.84 E-value=3.1e+02 Score=22.25 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=66.6
Q ss_pred CeEEEEEEecCCeeeEEEccCCcEEeeccCc-cCcHHHHHHHHhhHhCCC----CCCeEEEecCccc--------CCCcc
Q 026933 65 STLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIP----PDQQRLIFAGKQL--------EDGRT 131 (230)
Q Consensus 65 ~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~----~~~q~L~~~g~~L--------~d~~~ 131 (230)
..+.+.+.......|+|...=.+.-.+.+.. ..|+.+ .|+..-|+. .....|..+|+.. .+...
T Consensus 139 P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~---ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~ 215 (359)
T 2j58_A 139 PQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMD---AINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDL 215 (359)
T ss_dssp CCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHH---HHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBG
T ss_pred CeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHH---HHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCc
Confidence 3455555555556777765544444566666 678665 444444442 3466777777542 23333
Q ss_pred hhhcccccCCceEEEEEeecceeEEEeeecCceEEEEee-ccccHHHHHHHh
Q 026933 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKI 182 (230)
Q Consensus 132 l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~-~~~tV~~LK~~i 182 (230)
-.++-+++|++|++--+ ....+++...-++.-.++++ ...|+.++-...
T Consensus 216 ~~~~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg~~~l~~~~~tl~eal~~A 265 (359)
T 2j58_A 216 TQNHLLYHGDILFIPSN--DDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNA 265 (359)
T ss_dssp GGCCBCCTTCEEEECBG--GGCEEEEEESBSSCEEEECBTTBCBHHHHHHHT
T ss_pred ccceeccCCCeEEEeec--eeeeEEeeccccCcceEeecCCCCCHHHHHHhC
Confidence 44567899998866432 33345555444555677875 588988886553
No 429
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.84 E-value=69 Score=22.83 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.4
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
..+.+.|+...|-.++|+.|++.+++.+....-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5799999999999999999999999998877554
No 430
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=22.72 E-value=87 Score=24.91 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCeeeEEEccCCcEEeeccCc--cCcHHHHHHHHhhHhCCCCC---CeEEEecC
Q 026933 75 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIFAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~~~---~q~L~~~g 123 (230)
+-+++.|...+|....++++. ++|+.++- +..|++.. ..-|....
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~ 53 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICS 53 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEEC
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEEC
Confidence 346788889999999999998 99999993 44677643 35666433
No 431
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=22.43 E-value=71 Score=19.11 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=20.1
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEee
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.|.+.-+.+.+-++.++.
T Consensus 24 ~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v 53 (75)
T 2gcx_A 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIET 53 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 468899999999998876544333344443
No 432
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=22.39 E-value=2e+02 Score=21.54 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=35.9
Q ss_pred cccccCCceEEEEEeecceeEEEeeecCceEEEE-eeccccHHHHHHHhchhcC
Q 026933 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEG 187 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~-v~~~~tV~~LK~~i~~~~g 187 (230)
.++..+..+++++.-.+.....++....+...+. .++.++.+-+|+.+....+
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~ 103 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVG 103 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTT
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccc
Confidence 4677888888888766666667776555555677 6777888888988887544
No 433
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=22.24 E-value=63 Score=20.55 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+-+.-+..-|+.|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4555668999999999888777777666653
No 434
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=21.93 E-value=1e+02 Score=19.89 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=37.5
Q ss_pred EEEe-eccccHHHHHHHhchhcCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEEE
Q 026933 166 TLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 166 ~~~v-~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L-~d~~~L~~~~i~~g~~i~l~~~ 224 (230)
++-+ ....||.++-.+|+...+-. -.+.++|+-..= +..+-=.++-+++++.|.++.+
T Consensus 28 pviL~~~GsTv~Dfa~~IH~di~~~-fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCMKIHKNLIKE-FKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp CEEEETTSCCHHHHHHHHCTTCTTT-EEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred CEEEecCCCCHHHHHHHHHHHHHhh-ccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 4566 66899999999999986321 134455543221 2333335666889999988876
No 435
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.80 E-value=1e+02 Score=19.28 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
+|++...+| ...+++.+++|+.+.=..-
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~~ 30 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSEK 30 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHHC
Confidence 466655555 7889999999998876664
No 436
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=21.75 E-value=1.2e+02 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.+++|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (98)
T 1iue_A 5 ITLRTNDG-EKKIECNEDEYILDASER 30 (98)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCC-eEEEEeCCCCcHHHHHHH
Confidence 44444444 688999999999887655
No 437
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=21.65 E-value=77 Score=20.72 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCc-cCcHHH
Q 026933 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDN 101 (230)
Q Consensus 23 v~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~-~~tV~~ 101 (230)
..++-+.+.+.+|.|++.+...+. ++..+. ++ ++ ..+-..+.|+...|.+ .+. ..-+..
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~-~~---g~-------~~~~~~v~i~~~~g~t----~eqk~~l~~~ 79 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT-FS---GN-------TEPTCYVEVKSIGALD----GSRTQEVSEL 79 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC-BT---TB-------CSSCEEEEEEESSCCC----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE-EC---CC-------CCcEEEEEEEEecCCC----HHHHHHHHHH
Confidence 566666777889999998877653 221111 11 11 1222334444333332 111 124667
Q ss_pred HHHHHhhHhCCCCCCeEEEecC
Q 026933 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHhCcCcccEEEEEEE
Confidence 7778888899999998887654
No 438
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.56 E-value=1.7e+02 Score=18.83 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=47.8
Q ss_pred cHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHH
Q 026933 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~ 101 (230)
=..++-+.+.+.+|.|.+.+...+.. +..+. ++ ++ ..+-.-+.|+...|.+.. - ...-+..
T Consensus 18 l~~~l~~~l~~~l~kPe~~~~v~~~~-----~~~~~-~~---g~-------~~~~~~i~i~~~~g~~~e--q-k~~l~~~ 78 (113)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINT-----DQQLS-FG---GS-------TNPAAFGTLMSIGGIEPS--R-NRDHSAK 78 (113)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-ET---TB-------CSSCEEEEEEESSSCSHH--H-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHEEEEEeC-----CccEE-ec---CC-------CCCeEEEEEEEecCCCHH--H-HHHHHHH
Confidence 36778888889999999988776632 11111 11 11 122223444434433211 0 1123566
Q ss_pred HHHHHhhHhCCCCCCeEEEecC
Q 026933 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHhCcCcCeEEEEEEE
Confidence 6777888899999998887643
No 439
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.23 E-value=81 Score=22.10 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=30.2
Q ss_pred ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
..+.+.|+...+-.++|+.|++.+++.+....-+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 113 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTL 113 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 5789999999999999999999999988876554
No 440
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=20.85 E-value=53 Score=21.23 Aligned_cols=28 Identities=4% Similarity=0.173 Sum_probs=22.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|...++++.+++|+.+.=..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~ 29 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQ 29 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5677667888889999999999876544
No 441
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.74 E-value=1.3e+02 Score=19.64 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=20.6
Q ss_pred cchhhcccccCCceEEEEEeecceeEEEee
Q 026933 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.|.+.-+.+.+-++.++.
T Consensus 25 rrL~~lGl~pG~~V~Vv~~~P~ggpi~V~v 54 (105)
T 2k5f_A 25 RRLMDLGLVRGAKLKVLRFAPLGDPIEVNC 54 (105)
T ss_dssp HHHHHHTCSTTCEEEEEEECSSSCSEEEEE
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEE
Confidence 468899999999998887654332333333
No 442
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=20.45 E-value=68 Score=26.24 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=39.6
Q ss_pred EEccCCc----EEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEec----C--cccCCCcchhh
Q 026933 81 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA----G--KQLEDGRTLAD 134 (230)
Q Consensus 81 v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~----g--~~L~d~~~l~~ 134 (230)
|...+|. ...+.+++++|+.++-..|+++.|+.. +..-|.+. | .-|+.++++.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4455666 889999999999999999999999843 33566642 2 13677777765
No 443
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.25 E-value=91 Score=22.06 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.7
Q ss_pred CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~ 196 (230)
...+.+.|+...+-.++|+.|+..+++.+....-+
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 121 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTL 121 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 45799999999999999999999999988776554
No 444
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=20.11 E-value=1.3e+02 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=18.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026933 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.++.|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 5 VTLVTPTG-NVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCc-eEEEEeCCCCcHHHHHHH
Confidence 44443444 788999999999887655
No 445
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=20.11 E-value=55 Score=23.25 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=23.6
Q ss_pred CEEEEEccCCcEEEEEecCCC---cHHHHHHHh
Q 026933 1 MQIFVKTLTGKTITLEVESSD---TIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~---tv~~lK~~i 30 (230)
|+|.+. .+|.++..++..+. |..++.+++
T Consensus 30 ~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIR-FESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEE-ETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 667774 56788999999999 999998873
Done!