BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026937
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 32/193 (16%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L+T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTD 209
G+K+ L P +
Sbjct: 152 MGRKYIRLYSPQE 164
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 32/193 (16%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCXQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLXTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTD 209
G+K+ L P +
Sbjct: 152 XGRKYIRLYSPQE 164
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 19 NSTIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXX 75
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 13 EKTVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVP 68
Query: 76 XXXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYL 135
+ +L+T+ F S ++ P D + ++ + D + L
Sbjct: 69 VEVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPEL 117
Query: 136 QQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTV 195
+Q D +Y LG +E I +N W G Q + + H+D +N
Sbjct: 118 KQ--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQ 163
Query: 196 VSGQKHFLLLPPTD 209
V G+K+ L P +
Sbjct: 164 VMGRKYIRLYSPQE 177
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 19 NSTIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXX 75
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 4 EKTVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVP 59
Query: 76 XXXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYL 135
+ +L+T+ F S ++ P D + ++ + D + L
Sbjct: 60 VEVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPEL 108
Query: 136 QQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTV 195
+Q D +Y LG +E I +N W G Q + + H+D +N
Sbjct: 109 KQ--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQ 154
Query: 196 VSGQKHFLLLPPTD 209
V G+K+ L P +
Sbjct: 155 VMGRKYIRLYSPQE 168
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 185 HKDHYENLYTVVSGQKHFLLLPPTDVHRCGTVYVGAGGACEIC 227
H D ++G + L L D+H C V++GAG + C
Sbjct: 192 HDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTC 234
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 101 EISQCFASAHVERLPFDEA---------LQLVSNSKNG-DVVAYLQQQNDCFRDEYSVLG 150
EI+Q F S + F++A + LV N + VV+ Q N Y ++G
Sbjct: 139 EINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMG 198
Query: 151 SDCDEHIAWATEALGCYPEAVNLW 174
+D EH A+ PE +N W
Sbjct: 199 NDVWEH-AYYLRYQNRRPEYLNNW 221
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRC 213
L IG + + T H D +N + + G K +L PP D C
Sbjct: 187 LLIGXEGNVTPAHYDEQQNFFAQIKGYKRCILFPP-DQFEC 226
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 168 PEAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRCG-----------TV 216
PEA +GN + FH+ ++ENL++ S H +L P +H G T
Sbjct: 352 PEA----LGNLVEGLDFHRFYFENLWSRNSKPVHTTILNP-HIHLMGDESACIAYIRITQ 406
Query: 217 YVGAGG 222
Y+ AGG
Sbjct: 407 YLDAGG 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,023,689
Number of Sequences: 62578
Number of extensions: 260812
Number of successful extensions: 502
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 16
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)