Query 026937
Match_columns 230
No_of_seqs 178 out of 1098
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2508 Predicted phospholipas 100.0 1.8E-40 3.8E-45 284.0 13.5 205 3-220 7-213 (437)
2 PF13621 Cupin_8: Cupin-like d 100.0 1.4E-32 3E-37 231.9 10.2 174 31-218 1-180 (251)
3 KOG2130 Phosphatidylserine-spe 99.9 4.4E-26 9.5E-31 192.9 9.4 173 21-223 53-235 (407)
4 KOG2132 Uncharacterized conser 99.9 1.9E-25 4.2E-30 190.2 8.4 170 21-218 128-299 (355)
5 KOG2131 Uncharacterized conser 99.3 1.3E-12 2.9E-17 113.3 4.1 171 21-217 29-248 (427)
6 COG2850 Uncharacterized conser 98.4 9.7E-07 2.1E-11 77.5 7.1 152 28-215 14-165 (383)
7 PF08007 Cupin_4: Cupin superf 97.7 2.6E-05 5.7E-10 68.7 3.8 40 169-208 114-154 (319)
8 smart00558 JmjC A domain famil 97.1 0.00044 9.5E-09 45.0 2.4 29 170-198 27-57 (57)
9 KOG3706 Uncharacterized conser 96.7 0.00089 1.9E-08 61.0 2.4 48 162-210 311-359 (629)
10 PF02373 JmjC: JmjC domain, hy 94.6 0.022 4.7E-07 41.8 2.0 42 172-213 1-45 (114)
11 KOG1633 F-box protein JEMMA an 84.2 1.2 2.5E-05 44.0 3.9 105 111-218 62-178 (776)
12 KOG1356 Putative transcription 81.4 1 2.2E-05 44.2 2.2 44 32-81 531-574 (889)
13 KOG2132 Uncharacterized conser 77.9 0.28 6.1E-06 43.1 -2.4 37 172-208 177-213 (355)
14 KOG3413 Mitochondrial matrix p 51.0 27 0.00059 27.3 4.0 25 164-189 95-119 (156)
15 PF06052 3-HAO: 3-hydroxyanthr 48.4 16 0.00035 28.6 2.4 40 169-208 33-72 (151)
16 TIGR03037 anthran_nbaC 3-hydro 48.2 34 0.00073 27.2 4.2 36 171-206 30-65 (159)
17 PRK13264 3-hydroxyanthranilate 45.8 34 0.00073 27.7 4.0 37 170-206 35-71 (177)
18 PF07710 P53_tetramer: P53 tet 33.1 9.5 0.00021 23.2 -0.8 17 187-203 6-22 (42)
19 COG4830 RPS26B Ribosomal prote 32.3 63 0.0014 23.5 3.2 54 176-229 13-79 (108)
20 smart00751 BSD domain in trans 31.5 30 0.00066 21.6 1.3 17 25-41 30-46 (51)
21 PRK11162 mltA murein transglyc 25.1 33 0.00071 30.8 0.9 37 186-224 172-208 (355)
22 KOG0426 Ubiquitin-protein liga 24.8 40 0.00086 25.8 1.1 40 3-51 5-45 (165)
23 PF02041 Auxin_BP: Auxin bindi 23.8 1.4E+02 0.003 23.6 3.9 38 170-207 43-82 (167)
24 PF08007 Cupin_4: Cupin superf 23.1 63 0.0014 28.4 2.3 21 31-52 1-21 (319)
25 PF13333 rve_2: Integrase core 21.2 1.3E+02 0.0028 18.6 2.9 31 2-38 21-51 (52)
No 1
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=283.95 Aligned_cols=205 Identities=41% Similarity=0.704 Sum_probs=185.0
Q ss_pred HHHHHHHHhhhccCCCCCcceeecCCCCHHHHHHHhhcCCCcEEEEcCCCCCCCCccccCCChhhHHHHcCCCCCEEEEe
Q 026937 3 EVKKLWDEVRELSLGSNSTIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHL 82 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~ri~~~~s~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~~eyL~~~~G~~~~V~v~~ 82 (230)
+++-+++|.|||++|. .|.+++..+|+-+|+++|+.+|+||||+.+.. +|||+++|+..+||.+++||. .|.|++
T Consensus 7 e~~~llre~relcvp~--~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~--hWpal~lWs~p~Yl~~algd~-vvsvai 81 (437)
T KOG2508|consen 7 EYKGLLREVRELCVPV--LVNLLDLTPTPLDFYRKFVSTNTPVIIRKALP--HWPALKLWSQPDYLLSALGDI-VVSVAI 81 (437)
T ss_pred HHHhhhHHHhhccccc--ccccccCCCchHHHHHhhhcCCCcEEEecccc--cCchhhccCchHHHHHhccCe-EEEEEe
Confidence 4677999999999997 99999988999999999999999999999999 999999999978999999999 999999
Q ss_pred ccCCCCC-cccccCCCCCCccccccccceEEEecHHHHHHHHHcCCCCccccccccccccccccchhhhccccc-chhhh
Q 026937 83 SPNGRAD-SLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDE-HIAWA 160 (230)
Q Consensus 83 ~~~g~~d-~~~~~~~~~~~~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~~~L~~Di~~-~~p~~ 160 (230)
+|+|..| +.++. ...|.....++|+++|-+..+.....++...|+++++++|+.++|+|..|+.. +++|+
T Consensus 82 tPngyadgav~~g--------~e~f~~pae~KlklsevL~vl~~~~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa 153 (437)
T KOG2508|consen 82 TPNGYADGAVMSG--------NEMFIKPAEQKLKLSEVLYVLTQYDESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWA 153 (437)
T ss_pred CCCCccccccccC--------cceeechhhhhccchhhheehhcccCCCceeehhhhccccccccccccccccccccccc
Confidence 9999887 44432 23455556669999999999998877778999999999999999999999986 89999
Q ss_pred hhhhCCCCCccEEEeeCCCCCCCccccCCCceEEEEEeEeEEEEeCCCCCCCCcceecCC
Q 026937 161 TEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRCGTVYVGA 220 (230)
Q Consensus 161 ~~~~~~~~~~~~lwiG~~gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP~~~~~LY~~~~~~ 220 (230)
+++||+.|++.|+|||...++|.||.|+|+|++|+|.|.|+|+|.||++.+.|+.....+
T Consensus 154 ~eafgk~PdavNlWiG~~~avTSlHkDhyENlYaViSGeKhFvlipP~d~~~lp~eiyp~ 213 (437)
T KOG2508|consen 154 PEAFGKVPDAVNLWIGKSEAVTSLHKDHYENLYAVISGEKHFVLIPPDDANQLPLEIYPN 213 (437)
T ss_pred HHHhCCChhheeeeecccccccccccccccceEEEEeccceEEEeCcccccccceeecCC
Confidence 999999999999999999999999999999999999999999999999999887544433
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.98 E-value=1.4e-32 Score=231.87 Aligned_cols=174 Identities=32% Similarity=0.552 Sum_probs=131.7
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCCCCCCccccCCC----hhhHHHHcCCCCCEEEEeccCCCCCcccccCCCCCCcccccc
Q 026937 31 PLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPH----PSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCF 106 (230)
Q Consensus 31 ~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~----~eyL~~~~G~~~~V~v~~~~~g~~d~~~~~~~~~~~~~~~~f 106 (230)
|++|+++|+.+++||||+|++. +|+|+++|+. .+||++++|+. .|.|....++..+..... ....+
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~--~w~a~~~W~~~~~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~~-------~~~~~ 70 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAA--DWPAFQKWTDDEYLLDYLKEKYGDV-PVPVRDSPNGISDSFGYN-------DDRKF 70 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSST--TCCHHHH-S-----HHHHHHHHTSS-EEEEEEEST--SSBTS-B--------GCCC
T ss_pred CHHHHHHHhCCCCCEEEeCCcc--CCchhhhccchhHHHHHHHHHcCCe-EEEEEecCCccccccccc-------ccccc
Confidence 6899999999999999999999 9999999995 59999999999 999986553322221100 01223
Q ss_pred ccceEEEecHHHHHHHHHcCCCC--ccccccccccccccccchhhhcccccchhhhhhhhCCCCCccEEEeeCCCCCCCc
Q 026937 107 ASAHVERLPFDEALQLVSNSKNG--DVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSF 184 (230)
Q Consensus 107 ~~~~~~~m~~~efl~~~~~~~~~--~~~~Yl~~~~~~l~~~~~~L~~Di~~~~p~~~~~~~~~~~~~~lwiG~~gt~T~l 184 (230)
.......|+|++|++.+...... ...+|+.. ..+..++|.|.+|. .+||.++.++......+||||++|+.|++
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ig~~gs~t~l 146 (251)
T PF13621_consen 71 VNFERERMPFRDFLDRLRANRDQRDKPYYYLQN--WNLFEDFPELREDN--DLPFPPELFGKEPQSSNLWIGPPGSFTPL 146 (251)
T ss_dssp TCEEEEEEEHHHHHHHHHHSCHSTSSSEEEEEE--ETHHHHSHHHHCCS---CHHHHCHSCCHCCEEEEEEE-TTEEEEE
T ss_pred cCCeeEECcHHHHHHHHHhcccccCCceEEEec--CchHHHhhhhhhcc--ccccchhhcccCccccEEEEeCCCceeee
Confidence 34568899999999999987522 24677764 34777888999884 35677777765556789999999999999
Q ss_pred cccCCCceEEEEEeEeEEEEeCCCCCCCCcceec
Q 026937 185 HKDHYENLYTVVSGQKHFLLLPPTDVHRCGTVYV 218 (230)
Q Consensus 185 H~D~~~N~~~qi~G~Kr~~LfpP~~~~~LY~~~~ 218 (230)
|+|..+|++|||+|+|+|+||||.+..+||+...
T Consensus 147 H~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~ 180 (251)
T PF13621_consen 147 HYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPD 180 (251)
T ss_dssp EE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETT
T ss_pred eECchhhhhhccCCCEEEEEECCcccccccccee
Confidence 9999999999999999999999999999998874
No 3
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.93 E-value=4.4e-26 Score=192.86 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=139.0
Q ss_pred cceeecC-CCCHHHHHHHhhcCCCcEEEEcCCCCCCCCccccCCChhhHHHHcCCCCCEEEEeccCCCCCcccccCCCCC
Q 026937 21 TIERLES-PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRS 99 (230)
Q Consensus 21 ~I~ri~~-~~s~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~~eyL~~~~G~~~~V~v~~~~~g~~d~~~~~~~~~~ 99 (230)
.++|.+. .+|.++|.++|-++++||||+|++. +|||.++||. ++|.+++|++ .+.+- ++ +
T Consensus 53 n~~r~~~~~isveeF~~~ferp~kPVll~g~~D--gW~A~ekWT~-drLskkyrnq-~Fkcg--ed---~---------- 113 (407)
T KOG2130|consen 53 NGNRERRRNISVEEFIERFERPYKPVLLSGLTD--GWPASEKWTL-DRLSKKYRNQ-KFKCG--ED---N---------- 113 (407)
T ss_pred cchhhhhcCCCHHHHHHHhcccCCceEeecccc--CCchhhhhhH-HHHHHHhcCc-ccccc--cc---C----------
Confidence 4444443 5999999999999999999999999 9999999999 9999999998 66552 21 1
Q ss_pred CccccccccceEEEecHHHHHHHHHcCCCCccccccccccccccccch--hhhcccccchhhhhhhhC-----CCCCccE
Q 026937 100 GEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYS--VLGSDCDEHIAWATEALG-----CYPEAVN 172 (230)
Q Consensus 100 ~~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~~--~L~~Di~~~~p~~~~~~~-----~~~~~~~ 172 (230)
+...++|+|+.|++++.++.+. .++|+. ++.+.+..| .|.+|+..+..|..+.|+ ..|+.++
T Consensus 114 --------~gnsv~MKmkyY~~Ym~~~Rdd-sPLYiF--DssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRW 182 (407)
T KOG2130|consen 114 --------NGNSVKMKMKYYIEYMKSTRDD-SPLYIF--DSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRW 182 (407)
T ss_pred --------CCcceeeeHHHHHHHHhccccC-CCeEEe--cchhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCcee
Confidence 2356799999999999988654 579998 344655555 699999876667776663 2466889
Q ss_pred EEeeCCCCCCCccccCCC--ceEEEEEeEeEEEEeCCCCCCCCcceecCCCCe
Q 026937 173 LWIGNQLSETSFHKDHYE--NLYTVVSGQKHFLLLPPTDVHRCGTVYVGAGGA 223 (230)
Q Consensus 173 lwiG~~gt~T~lH~D~~~--N~~~qi~G~Kr~~LfpP~~~~~LY~~~~~~~~~ 223 (230)
+-|||++++|..|.|+.. .++++|+|+|||+||||...+.+-...+.-+|.
T Consensus 183 fvmGParSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~g~ 235 (407)
T KOG2130|consen 183 FVMGPARSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEGGK 235 (407)
T ss_pred EEecCCCCCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccccCC
Confidence 999999999999999876 468999999999999999988877555544443
No 4
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-25 Score=190.18 Aligned_cols=170 Identities=21% Similarity=0.295 Sum_probs=137.0
Q ss_pred cceeecCCCCHHHHHHHhhcCCCcEEEEcCCCCCCCCccccCCChhhHHHHcCCCCCEEEEeccCCCCCcccccCCCCCC
Q 026937 21 TIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSG 100 (230)
Q Consensus 21 ~I~ri~~~~s~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~~eyL~~~~G~~~~V~v~~~~~g~~d~~~~~~~~~~~ 100 (230)
.++..+ .++.++|..+++.++.|+|++|... ||||.++|.. .||....|.+ .|+|+++.+- .+.
T Consensus 128 ~~~~~~-~~~l~~~l~d~~~~~~p~~~l~~~~--hwpa~~kw~l-~~l~~va~~r-TvpvEvg~~y-~~~---------- 191 (355)
T KOG2132|consen 128 DVPGED-RLSLQEFLNDTVGRGTPVILLGFNW--HWPAIQKWSL-GYLQQVAGNR-TVPVEVGSTY-ADE---------- 191 (355)
T ss_pred hhcccc-chHHHHHHHHhhcCCCceEEecccc--cchHhhhcch-hHHHhcccce-eeeeeccccc-chh----------
Confidence 444555 4999999999999999999999999 9999999977 9999999999 9999986531 111
Q ss_pred ccccccccceEEEecHHHHHHHHHcCCCCccccccccccccccccchhhhcccccchhhhhhhhCCCC--CccEEEeeCC
Q 026937 101 EISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYP--EAVNLWIGNQ 178 (230)
Q Consensus 101 ~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~~~L~~Di~~~~p~~~~~~~~~~--~~~~lwiG~~ 178 (230)
.+....|++.+|+.+....++. ...|++++. +..+.+++..||..+-.+. ..+... ..++.|||+.
T Consensus 192 -------~w~q~l~t~~~g~~R~~~~~p~-~~~YlAqh~--lfdqi~elk~Di~iPDyc~--~~~f~~~~v~~~~w~Gpa 259 (355)
T KOG2132|consen 192 -------DWSQNLMTQIKGIKRCILFEPR-ECLYLAQHH--LFDQIPELKFDISIPDYCS--FPNFENEVVDINAWIGPA 259 (355)
T ss_pred -------HHHhhhHHHhhhhhhhhcCCcc-ccchhhhhh--hhccchhhhhccCCCceee--cCCCCccccceeEEeccC
Confidence 2345589999999988877654 467887653 6678888999986321110 112222 4789999999
Q ss_pred CCCCCccccCCCceEEEEEeEeEEEEeCCCCCCCCcceec
Q 026937 179 LSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRCGTVYV 218 (230)
Q Consensus 179 gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP~~~~~LY~~~~ 218 (230)
|++||+|+|+.+|+++||.|+|+|+||+|.++.+|||...
T Consensus 260 GtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~ 299 (355)
T KOG2132|consen 260 GTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDT 299 (355)
T ss_pred CceeccccccccceeeeeecceEEEEecCcccCCCCCccc
Confidence 9999999999999999999999999999999999999874
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-12 Score=113.26 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred cceeecC-CCCHHHHHHHhhcCCCcEEEEcCCCCCCCCcc----ccCCCh-----------hhHHHHcCCCCCEEEEecc
Q 026937 21 TIERLES-PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAF----SLWPHP-----------SYLSKTLSSSPPVSVHLSP 84 (230)
Q Consensus 21 ~I~ri~~-~~s~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~----~~Wt~~-----------eyL~~~~G~~~~V~v~~~~ 84 (230)
.|+|+-+ ..+..+|...+..++.||+|.++.. +|++. ..|.++ .|.+.+..+. .++|....
T Consensus 29 ~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~--d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~-~~~v~~~~ 105 (427)
T KOG2131|consen 29 CVLRLIGPTADYGDFAERDTHKRPGVLISYVLE--DWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNG-DKNVFLCD 105 (427)
T ss_pred hhhhhcccccCcccchhhhcccCCCcccccccc--CcccccCCCcchhhhccCcchhHHHHHHhHHHHhcC-Cccccccc
Confidence 6778876 5888999999999999999999999 99998 455421 2333333333 33333221
Q ss_pred CCCCCcccccCCCCCCccccccccceEEEecHHHHHHHHHcCCCC-----------------------cccccccccccc
Q 026937 85 NGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNG-----------------------DVVAYLQQQNDC 141 (230)
Q Consensus 85 ~g~~d~~~~~~~~~~~~~~~~f~~~~~~~m~~~efl~~~~~~~~~-----------------------~~~~Yl~~~~~~ 141 (230)
.. .|-+....++++.+|+..+.+-... ...+|+... +
T Consensus 106 ~s------------------~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDw--H 165 (427)
T KOG2131|consen 106 LS------------------LFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDW--H 165 (427)
T ss_pred cc------------------cCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccch--h
Confidence 11 1123334456666666555543211 122333321 1
Q ss_pred ccccchhhhccccc--chhhhh----hhhC--CCCCccEEEeeCCCCCCCccccCCC--ceEEEEEeEeEEEEeCCCCCC
Q 026937 142 FRDEYSVLGSDCDE--HIAWAT----EALG--CYPEAVNLWIGNQLSETSFHKDHYE--NLYTVVSGQKHFLLLPPTDVH 211 (230)
Q Consensus 142 l~~~~~~L~~Di~~--~~p~~~----~~~~--~~~~~~~lwiG~~gt~T~lH~D~~~--N~~~qi~G~Kr~~LfpP~~~~ 211 (230)
|...++ .|... +.-|.. ++.. ...+.+++.+|++||.||+|.|.++ .+.+.|.|+|+|+||||.|..
T Consensus 166 L~~~~d---~~~~~~~pd~F~~dwlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~ 242 (427)
T KOG2131|consen 166 LYRFLD---NDFPYWTPDLFAKDWLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQ 242 (427)
T ss_pred eeeecC---cccccccchhhhhcccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhh
Confidence 111110 11110 000111 1111 1235789999999999999999776 568999999999999999998
Q ss_pred CCccee
Q 026937 212 RCGTVY 217 (230)
Q Consensus 212 ~LY~~~ 217 (230)
.|+-++
T Consensus 243 ~l~dr~ 248 (427)
T KOG2131|consen 243 TLADRY 248 (427)
T ss_pred hhhhhc
Confidence 888766
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=9.7e-07 Score=77.52 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=88.2
Q ss_pred CCCHHHHHHHhhcCCCcEEEEcCCCCCCCCccccCCChhhHHHHcCCCCCEEEEeccCCCCCcccccCCCCCCccccccc
Q 026937 28 PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCFA 107 (230)
Q Consensus 28 ~~s~~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~~eyL~~~~G~~~~V~v~~~~~g~~d~~~~~~~~~~~~~~~~f~ 107 (230)
.+|+++|+++|- ..||+||||++. +. .+.-+. +-|.+-.-.. .|.-+...... + |
T Consensus 14 glt~~~FL~~YW-qkKPlliR~a~p--~~--~~p~~p-deLa~La~~e-dV~srLV~~~~-~----------~------- 68 (383)
T COG2850 14 GLTPEDFLRDYW-QKKPLLIRNAFP--EF--HSPLSP-DELAGLAQEE-DVTSRLVSHES-D----------G------- 68 (383)
T ss_pred CCCHHHHHHHHh-hhcchHHhhccc--cc--ccCCCH-HHHHHHhccc-cccchhhhhcc-C----------C-------
Confidence 599999999885 678999999987 52 233333 4477766655 55443221100 0 0
Q ss_pred cceEEEecHHHHHHHHHcCCCCccccccccccccccccchhhhcccccchhhhhhhhCCCCCccEEEeeCCCCCCCcccc
Q 026937 108 SAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKD 187 (230)
Q Consensus 108 ~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~~~~~L~~Di~~~~p~~~~~~~~~~~~~~lwiG~~gt~T~lH~D 187 (230)
.+....-+|.++ +..... .+-.+-.+..+ ..-.+...|.+-+.. .+. ...+.+.+-....|.+-.-|+|
T Consensus 69 ~w~~~~gPfe~~-d~~~~p--~~wsllvq~vd-~w~p~v~~l~~~Frf----lP~---wr~ddiMIS~a~~GGgvg~H~D 137 (383)
T COG2850 69 TWQVSHGPFEEE-DFLGLP--RNWSLLVQAVD-HWHPEVAALMEPFRF----LPD---WRIDDIMISFAAPGGGVGPHFD 137 (383)
T ss_pred ceeEeeCccchh-ccccCC--cCceEEEehhh-hcCHHHHHHHHHhcc----Ccc---ccccceEEEEecCCCccCcccc
Confidence 233444555554 222221 11111111111 222333444443321 111 1123445556777889999999
Q ss_pred CCCceEEEEEeEeEEEEeCCCCCCCCcc
Q 026937 188 HYENLYTVVSGQKHFLLLPPTDVHRCGT 215 (230)
Q Consensus 188 ~~~N~~~qi~G~Kr~~LfpP~~~~~LY~ 215 (230)
.|++|+.|..|+|||.|=.+.+...+++
T Consensus 138 ~YDVfliQg~G~RRW~v~~~~~~~~~~~ 165 (383)
T COG2850 138 QYDVFLIQGQGRRRWRVGKKCNMSTLCP 165 (383)
T ss_pred chheeEEeecccceeecCCcccccCcCC
Confidence 9999999999999999988877766666
No 7
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=97.73 E-value=2.6e-05 Score=68.72 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=33.5
Q ss_pred CccEEEeeCCC-CCCCccccCCCceEEEEEeEeEEEEeCCC
Q 026937 169 EAVNLWIGNQL-SETSFHKDHYENLYTVVSGQKHFLLLPPT 208 (230)
Q Consensus 169 ~~~~lwiG~~g-t~T~lH~D~~~N~~~qi~G~Kr~~LfpP~ 208 (230)
-..|++++++| .....|+|.+++|.+|+.|+|+|.|+++.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~ 154 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPP 154 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SC
T ss_pred cceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCC
Confidence 36899999998 68899999999999999999999999843
No 8
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.05 E-value=0.00044 Score=45.04 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.3
Q ss_pred ccEEEeeCCCCCCCccccCCC--ceEEEEEe
Q 026937 170 AVNLWIGNQLSETSFHKDHYE--NLYTVVSG 198 (230)
Q Consensus 170 ~~~lwiG~~gt~T~lH~D~~~--N~~~qi~G 198 (230)
.+++|+|+.+|.|++|+|.++ |++.|..|
T Consensus 27 ~~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 27 VPYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred cceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 488999999999999999999 87776654
No 9
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00089 Score=60.95 Aligned_cols=48 Identities=31% Similarity=0.436 Sum_probs=39.5
Q ss_pred hhhCCCCCccEEEeeCCCC-CCCccccCCCceEEEEEeEeEEEEeCCCCC
Q 026937 162 EALGCYPEAVNLWIGNQLS-ETSFHKDHYENLYTVVSGQKHFLLLPPTDV 210 (230)
Q Consensus 162 ~~~~~~~~~~~lwiG~~gt-~T~lH~D~~~N~~~qi~G~Kr~~LfpP~~~ 210 (230)
+.||+ .-..|+++-|+|+ +-+.|||.-+.|+.||.|||+|+||.|...
T Consensus 311 eqFgc-~vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~ 359 (629)
T KOG3706|consen 311 EQFGC-LVGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVP 359 (629)
T ss_pred HHhcc-ccccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCc
Confidence 45553 2257899998886 668899999999999999999999998754
No 10
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.64 E-value=0.022 Score=41.85 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=30.6
Q ss_pred EEEeeCCCCCCCccccCCCc--e-EEEEEeEeEEEEeCCCCCCCC
Q 026937 172 NLWIGNQLSETSFHKDHYEN--L-YTVVSGQKHFLLLPPTDVHRC 213 (230)
Q Consensus 172 ~lwiG~~gt~T~lH~D~~~N--~-~~qi~G~Kr~~LfpP~~~~~L 213 (230)
++.||..+|.|++|.|.... + +....|.|.|.++||.+...+
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~ 45 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKF 45 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHH
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhH
Confidence 47899999999999997653 2 456788999999999886544
No 11
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=84.20 E-value=1.2 Score=43.98 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=63.7
Q ss_pred EEEecHHHHHHHHHcCCCCccccccc-cc---c---ccccccchhhhccccc-chhhhhhhhCCCCC-ccEEEeeCCCCC
Q 026937 111 VERLPFDEALQLVSNSKNGDVVAYLQ-QQ---N---DCFRDEYSVLGSDCDE-HIAWATEALGCYPE-AVNLWIGNQLSE 181 (230)
Q Consensus 111 ~~~m~~~efl~~~~~~~~~~~~~Yl~-~~---~---~~l~~~~~~L~~Di~~-~~p~~~~~~~~~~~-~~~lwiG~~gt~ 181 (230)
..+|+|.+|++++...... .+|=. +. + +++. +-|++..++.- +--|.++.....+. .-...|+-+++.
T Consensus 62 ~~km~~~~~~~yy~~~~~~--R~yNVisLEfS~Trl~~~V-~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Y 138 (776)
T KOG1633|consen 62 DCKMTLKEFVKYYSSPQRK--RLYNVISLEFSDTRLSNLV-ESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSY 138 (776)
T ss_pred cccccHHHHhhhhcCcchh--hhhheeccccCcchHHhcC-CCchhhhhhhchhccCCchhcccccccccceeeeccccc
Confidence 4489999999999887532 33321 10 0 0011 11333333320 11232322222332 455779999999
Q ss_pred CCccccCCCc--eEEEEEeEeEEEEeCCCCCCC-Ccceec
Q 026937 182 TSFHKDHYEN--LYTVVSGQKHFLLLPPTDVHR-CGTVYV 218 (230)
Q Consensus 182 T~lH~D~~~N--~~~qi~G~Kr~~LfpP~~~~~-LY~~~~ 218 (230)
|.+|.|.... ++-.+.|.|++.|.+|.+... +|..+.
T Consensus 139 tdfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~w~ 178 (776)
T KOG1633|consen 139 TDFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYECWE 178 (776)
T ss_pred cccccCCCCcchhhhhhccccceeeeCCcccchhhhhhhh
Confidence 9999997653 367799999999999998765 555555
No 12
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=81.41 E-value=1 Score=44.22 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCCCCCCCccccCCChhhHHHHcCCCCCEEEE
Q 026937 32 LQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVH 81 (230)
Q Consensus 32 ~~F~~~y~~~~~PvVi~g~~~~~~Wpa~~~Wt~~eyL~~~~G~~~~V~v~ 81 (230)
..| +++-..++|||++|+.. .... ..|.+ +-|...+|+. .+.+.
T Consensus 531 ~~F-QEhWkqGqPViVs~V~~--~l~g-~lW~P-~a~~~~~g~q-~~~l~ 574 (889)
T KOG1356|consen 531 KHF-QEHWKQGQPVIVSGVHK--KLNG-LLWKP-EALSRAFGDQ-VVDLS 574 (889)
T ss_pred HHH-HHHHhcCCcEEehHhhh--hccc-cccch-HHHHHHhccc-hhhhh
Confidence 346 45668999999999987 5443 58998 8899899998 55553
No 13
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=77.94 E-value=0.28 Score=43.06 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.5
Q ss_pred EEEeeCCCCCCCccccCCCceEEEEEeEeEEEEeCCC
Q 026937 172 NLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPT 208 (230)
Q Consensus 172 ~lwiG~~gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP~ 208 (230)
+.=++-....|..|+|..+|++.|+.|-||.++|+|.
T Consensus 177 ~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~p~ 213 (355)
T KOG2132|consen 177 NRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFEPR 213 (355)
T ss_pred ceeeeeecccccchhHHHhhhHHHhhhhhhhhcCCcc
Confidence 3445556678999999999999999999999999999
No 14
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=50.95 E-value=27 Score=27.26 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=19.9
Q ss_pred hCCCCCccEEEeeCCCCCCCccccCC
Q 026937 164 LGCYPEAVNLWIGNQLSETSFHKDHY 189 (230)
Q Consensus 164 ~~~~~~~~~lwiG~~gt~T~lH~D~~ 189 (230)
+++.++...+|++++ ..-|=|||-.
T Consensus 95 iNKQ~PnkQIWlSSP-~SGPkryD~~ 119 (156)
T KOG3413|consen 95 INKQPPNKQIWLSSP-VSGPKRYDLC 119 (156)
T ss_pred ecCCCCcceeeeeCC-CCCCcccccc
Confidence 455677888999998 7778899965
No 15
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=48.43 E-value=16 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=27.4
Q ss_pred CccEEEeeCCCCCCCccccCCCceEEEEEeEeEEEEeCCC
Q 026937 169 EAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPT 208 (230)
Q Consensus 169 ~~~~lwiG~~gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP~ 208 (230)
+.+-+.+|.+++.|-.|+|..+=|+-|+.|.=...+....
T Consensus 33 ~f~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g 72 (151)
T PF06052_consen 33 DFIVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDG 72 (151)
T ss_dssp SEEEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETT
T ss_pred CeEEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCC
Confidence 3455678999999999999999999999996665555443
No 16
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=48.18 E-value=34 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=29.2
Q ss_pred cEEEeeCCCCCCCccccCCCceEEEEEeEeEEEEeC
Q 026937 171 VNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLP 206 (230)
Q Consensus 171 ~~lwiG~~gt~T~lH~D~~~N~~~qi~G~Kr~~Lfp 206 (230)
.-+-+|.+|..+..|.+..+-++.|+.|.=.+.+-.
T Consensus 30 ~v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d 65 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTE 65 (159)
T ss_pred EEEEeCCCCCCcccccCCCceEEEEEcceEEEEEEc
Confidence 335578889999999998899999999997775544
No 17
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=45.85 E-value=34 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.6
Q ss_pred ccEEEeeCCCCCCCccccCCCceEEEEEeEeEEEEeC
Q 026937 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLP 206 (230)
Q Consensus 170 ~~~lwiG~~gt~T~lH~D~~~N~~~qi~G~Kr~~Lfp 206 (230)
..-+-+|.+|..+.+|+|+.+-++-|+.|.=++.+..
T Consensus 35 ~~VmvvgGpn~r~d~H~~~tdE~FyqleG~~~l~v~d 71 (177)
T PRK13264 35 FIVMVVGGPNARTDFHYDPGEEFFYQLEGDMYLKVQE 71 (177)
T ss_pred EEEEEEccCCcccccccCCCceEEEEECCeEEEEEEc
Confidence 3334568888999999999999999999986666654
No 18
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=33.09 E-value=9.5 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=12.9
Q ss_pred cCCCceEEEEEeEeEEE
Q 026937 187 DHYENLYTVVSGQKHFL 203 (230)
Q Consensus 187 D~~~N~~~qi~G~Kr~~ 203 (230)
+..+-|..||+||+++-
T Consensus 6 ~D~E~ftL~VrGRe~yE 22 (42)
T PF07710_consen 6 DDEEVFTLQVRGRERYE 22 (42)
T ss_dssp SCCCEEEEEEESHHHHH
T ss_pred CCCCEEEEEEecHHHHH
Confidence 44567889999998753
No 19
>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]
Probab=32.35 E-value=63 Score=23.47 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=37.3
Q ss_pred eCCCCCCCccccCCCceEEEEEeEeEEEEeCCCCCC--------CCcceecCC-C----CeeEEeee
Q 026937 176 GNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVH--------RCGTVYVGA-G----GACEICAL 229 (230)
Q Consensus 176 G~~gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP~~~~--------~LY~~~~~~-~----~~~~~~~~ 229 (230)
|.+|..-.+|-|......--=.--|+|.+++|-+.. .+|..|.-- + -||-+||.
T Consensus 13 ~~rGhv~~v~CdnCg~~vPkdKAikr~~i~s~Ve~a~~rdL~~asIy~~y~vpk~~~k~qyCVsCAi 79 (108)
T COG4830 13 KGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYSEYAVPKTYNKLQYCVSCAI 79 (108)
T ss_pred CCCCCccceeeccccccCCccceeeEeeccCcccHHHHHHHhhceeeeeeeccccccceeeeeeeee
Confidence 567788888888776655444556899999987653 356555422 2 38999985
No 20
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=31.54 E-value=30 Score=21.57 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=12.9
Q ss_pred ecCCCCHHHHHHHhhcC
Q 026937 25 LESPPTPLQFLRDYVSQ 41 (230)
Q Consensus 25 i~~~~s~~~F~~~y~~~ 41 (230)
++..+|.++|..+|+..
T Consensus 30 VP~~~se~~FW~ryF~~ 46 (51)
T smart00751 30 VPKVLSEEEFWARYFYL 46 (51)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34369999999998753
No 21
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=25.09 E-value=33 Score=30.78 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=28.7
Q ss_pred ccCCCceEEEEEeEeEEEEeCCCCCCCCcceecCCCCee
Q 026937 186 KDHYENLYTVVSGQKHFLLLPPTDVHRCGTVYVGAGGAC 224 (230)
Q Consensus 186 ~D~~~N~~~qi~G~Kr~~LfpP~~~~~LY~~~~~~~~~~ 224 (230)
.|+.|+|++||+|+=++.| |+-...++..|.|..|.+
T Consensus 172 ~dpvD~FflqVQGSGrv~l--~DG~~~~~vgYag~NG~p 208 (355)
T PRK11162 172 NSLIDNFIMEVQGSGYVDF--GDGRPLNFFAYAGKNGHA 208 (355)
T ss_pred CCHHHhHheeecceEEEEc--CCCCEEEEEEEcCCCCCC
Confidence 4678999999999999998 333336788888877754
No 22
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=40 Score=25.81 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhccCCCCCccee-ecCCCCHHHHHHHhhcCCCcEEEEcCC
Q 026937 3 EVKKLWDEVRELSLGSNSTIER-LESPPTPLQFLRDYVSQNKPCIIKNVS 51 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~r-i~~~~s~~~F~~~y~~~~~PvVi~g~~ 51 (230)
+++||+.||.+|-+.. -+- +.++++.+.|++ + =++|+|--
T Consensus 5 AlkRLm~EykqLt~~~---P~GIvAgP~~EdnfF~-W-----~cLI~GP~ 45 (165)
T KOG0426|consen 5 ALKRLMAEYKQLTLNP---PEGIVAGPINEDNFFE-W-----ECLIQGPE 45 (165)
T ss_pred HHHHHHHHHHHHccCC---CCcceeCCCCccceee-e-----eeeeeCCC
Confidence 6899999999996654 333 344778888864 3 46676653
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=23.83 E-value=1.4e+02 Score=23.64 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=24.2
Q ss_pred ccEEEe--eCCCCCCCccccCCCceEEEEEeEeEEEEeCC
Q 026937 170 AVNLWI--GNQLSETSFHKDHYENLYTVVSGQKHFLLLPP 207 (230)
Q Consensus 170 ~~~lwi--G~~gt~T~lH~D~~~N~~~qi~G~Kr~~LfpP 207 (230)
...+|+ =++|+.||.|...++-.++++.|+=...|...
T Consensus 43 evEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~ 82 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASS 82 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--S
T ss_pred eeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecc
Confidence 456775 24679999999999999999999999888844
No 24
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=23.12 E-value=63 Score=28.35 Aligned_cols=21 Identities=38% Similarity=0.767 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCcEEEEcCCC
Q 026937 31 PLQFLRDYVSQNKPCIIKNVSL 52 (230)
Q Consensus 31 ~~~F~~~y~~~~~PvVi~g~~~ 52 (230)
+++|+++|. .++|++|++...
T Consensus 1 pe~F~~~yw-~kkPl~i~~~~~ 21 (319)
T PF08007_consen 1 PETFLREYW-EKKPLLIRRADP 21 (319)
T ss_dssp HHHHHHHTT-TTS-EEE--SGC
T ss_pred ChhHHHHHh-ccCCEEECCCCc
Confidence 589999886 577999999877
No 25
>PF13333 rve_2: Integrase core domain
Probab=21.22 E-value=1.3e+02 Score=18.59 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=22.2
Q ss_pred hHHHHHHHHhhhccCCCCCcceeecCCCCHHHHHHHh
Q 026937 2 QEVKKLWDEVRELSLGSNSTIERLESPPTPLQFLRDY 38 (230)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~I~ri~~~~s~~~F~~~y 38 (230)
+++++.+.+|=+.. | =+||.+ +||.+|...+
T Consensus 21 eel~~~I~~YI~~y--N---~~Rl~~-lsP~eyr~~~ 51 (52)
T PF13333_consen 21 EELKQAIDEYIDYY--N---NERLKG-LSPVEYRNQY 51 (52)
T ss_pred HHHHHHHHHHHHHh--c---cCCCCC-cCHHHHHHhh
Confidence 56777888887774 3 245776 9999997654
Done!