Query 026938
Match_columns 230
No_of_seqs 196 out of 1304
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.1 4.5E-10 9.7E-15 78.6 7.7 60 23-82 2-66 (66)
2 smart00027 EH Eps15 homology d 99.0 1.6E-09 3.4E-14 82.0 9.2 72 15-87 4-75 (96)
3 KOG0027 Calmodulin and related 99.0 1.3E-09 2.7E-14 88.9 9.2 81 2-85 28-114 (151)
4 PLN02964 phosphatidylserine de 99.0 1.6E-09 3.4E-14 107.0 10.5 108 4-111 161-278 (644)
5 KOG0044 Ca2+ sensor (EF-Hand s 99.0 2.1E-09 4.6E-14 91.9 8.5 82 2-85 47-129 (193)
6 cd00052 EH Eps15 homology doma 99.0 2.9E-09 6.3E-14 73.9 7.2 62 24-86 2-63 (67)
7 cd05022 S-100A13 S-100A13: S-1 98.9 1.4E-08 3.1E-13 76.7 8.2 63 21-83 8-74 (89)
8 COG5126 FRQ1 Ca2+-binding prot 98.8 2.2E-08 4.8E-13 83.3 9.6 78 2-83 40-119 (160)
9 COG5126 FRQ1 Ca2+-binding prot 98.8 2E-08 4.3E-13 83.6 9.3 61 22-82 93-154 (160)
10 cd05025 S-100A1 S-100A1: S-100 98.8 2.8E-08 6.1E-13 74.6 7.7 74 21-100 9-90 (92)
11 cd05027 S-100B S-100B: S-100B 98.8 4.6E-08 1E-12 73.5 8.8 63 21-83 8-78 (88)
12 KOG0027 Calmodulin and related 98.8 5.1E-08 1.1E-12 79.4 9.2 70 15-84 2-72 (151)
13 cd05026 S-100Z S-100Z: S-100Z 98.7 5.8E-08 1.3E-12 73.5 8.6 63 21-83 10-80 (93)
14 PTZ00183 centrin; Provisional 98.7 1.8E-07 3.9E-12 74.8 10.0 73 13-85 9-82 (158)
15 PTZ00183 centrin; Provisional 98.7 1.7E-07 3.6E-12 75.0 9.7 79 2-83 37-117 (158)
16 cd00213 S-100 S-100: S-100 dom 98.7 1.2E-07 2.7E-12 70.2 8.2 67 17-83 4-78 (88)
17 cd05031 S-100A10_like S-100A10 98.7 1.2E-07 2.5E-12 71.5 8.2 63 21-83 8-78 (94)
18 cd00051 EFh EF-hand, calcium b 98.7 1.5E-07 3.3E-12 62.2 7.9 60 23-82 2-62 (63)
19 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.1E-07 2.4E-12 75.2 8.1 63 17-82 44-106 (116)
20 PTZ00184 calmodulin; Provision 98.6 2E-07 4.3E-12 73.4 8.9 71 14-84 4-75 (149)
21 PTZ00184 calmodulin; Provision 98.6 4.8E-07 1E-11 71.2 10.2 80 2-84 31-112 (149)
22 cd05023 S-100A11 S-100A11: S-1 98.6 4.1E-07 8.9E-12 68.6 8.7 63 21-83 9-79 (89)
23 cd05029 S-100A6 S-100A6: S-100 98.5 5.2E-07 1.1E-11 67.8 8.6 63 22-84 11-79 (88)
24 PF13833 EF-hand_8: EF-hand do 98.5 3.2E-07 6.9E-12 61.8 6.5 50 34-83 1-52 (54)
25 KOG0034 Ca2+/calmodulin-depend 98.5 8.7E-07 1.9E-11 75.6 9.4 78 3-82 88-173 (187)
26 KOG0037 Ca2+-binding protein, 98.4 1E-06 2.2E-11 76.3 8.4 76 2-85 77-153 (221)
27 KOG0028 Ca2+-binding protein ( 98.3 2.6E-06 5.6E-11 70.8 8.6 67 15-81 27-94 (172)
28 KOG0028 Ca2+-binding protein ( 98.3 4.8E-06 1E-10 69.2 9.0 80 2-84 53-134 (172)
29 KOG0457 Histone acetyltransfer 98.3 1.5E-07 3.2E-12 88.3 -0.0 73 88-165 13-94 (438)
30 PF12763 EF-hand_4: Cytoskelet 98.2 3.9E-06 8.5E-11 65.2 7.1 71 14-86 3-73 (104)
31 KOG0041 Predicted Ca2+-binding 98.2 5E-06 1.1E-10 71.5 8.1 80 15-94 93-173 (244)
32 PF13833 EF-hand_8: EF-hand do 98.2 3.9E-06 8.4E-11 56.5 6.0 45 2-49 8-53 (54)
33 PF00036 EF-hand_1: EF hand; 98.2 2E-06 4.4E-11 51.8 3.9 27 23-49 2-28 (29)
34 KOG0044 Ca2+ sensor (EF-Hand s 98.2 3.5E-06 7.5E-11 72.2 6.2 67 14-82 95-173 (193)
35 PF00036 EF-hand_1: EF hand; 98.1 3.9E-06 8.4E-11 50.6 4.1 27 57-83 1-27 (29)
36 cd05030 calgranulins Calgranul 98.1 1.6E-05 3.4E-10 59.5 7.8 62 22-83 9-78 (88)
37 PRK12309 transaldolase/EF-hand 98.0 2.1E-05 4.6E-10 74.0 8.3 58 14-83 327-384 (391)
38 PF14658 EF-hand_9: EF-hand do 97.9 3.4E-05 7.3E-10 55.3 6.5 58 25-82 2-62 (66)
39 KOG0037 Ca2+-binding protein, 97.9 4.4E-05 9.6E-10 66.3 8.1 66 22-87 125-191 (221)
40 KOG0377 Protein serine/threoni 97.9 3.3E-05 7.2E-10 73.2 7.4 68 21-88 547-619 (631)
41 cd05022 S-100A13 S-100A13: S-1 97.8 5E-05 1.1E-09 57.3 5.3 46 2-50 29-76 (89)
42 KOG0030 Myosin essential light 97.8 0.0001 2.3E-09 60.1 7.2 93 15-113 5-100 (152)
43 cd05024 S-100A10 S-100A10: A s 97.8 0.00025 5.4E-09 53.9 8.9 61 23-84 10-76 (91)
44 KOG0034 Ca2+/calmodulin-depend 97.7 0.00012 2.6E-09 62.5 7.5 64 23-86 68-134 (187)
45 PF13499 EF-hand_7: EF-hand do 97.7 7E-05 1.5E-09 52.0 5.1 46 2-47 20-66 (66)
46 KOG0036 Predicted mitochondria 97.7 0.00019 4.2E-09 67.5 8.5 68 15-82 8-77 (463)
47 PF13405 EF-hand_6: EF-hand do 97.7 7.2E-05 1.6E-09 45.1 3.8 26 23-48 2-27 (31)
48 KOG0031 Myosin regulatory ligh 97.6 0.00014 3.1E-09 60.3 6.5 90 12-113 23-113 (171)
49 PF13202 EF-hand_5: EF hand; P 97.6 9.2E-05 2E-09 43.0 3.5 21 60-80 3-23 (25)
50 cd02335 ZZ_ADA2 Zinc finger, Z 97.6 1.7E-05 3.8E-10 53.3 0.2 44 91-139 2-48 (49)
51 PF13202 EF-hand_5: EF hand; P 97.6 0.0001 2.2E-09 42.8 3.3 25 23-47 1-25 (25)
52 PLN02964 phosphatidylserine de 97.6 0.0003 6.6E-09 70.0 8.8 68 14-85 136-208 (644)
53 KOG0031 Myosin regulatory ligh 97.5 0.00064 1.4E-08 56.4 9.1 76 2-84 52-129 (171)
54 cd05029 S-100A6 S-100A6: S-100 97.5 0.00023 4.9E-09 53.5 5.9 46 2-50 32-80 (88)
55 cd05027 S-100B S-100B: S-100B 97.5 0.00036 7.9E-09 52.3 6.2 46 2-50 30-80 (88)
56 KOG0036 Predicted mitochondria 97.5 0.00038 8.2E-09 65.6 7.4 55 23-81 53-107 (463)
57 cd02343 ZZ_EF Zinc finger, ZZ 97.4 4.3E-05 9.2E-10 51.4 0.7 41 91-136 2-44 (48)
58 PF10591 SPARC_Ca_bdg: Secrete 97.4 7.5E-05 1.6E-09 58.7 2.0 62 18-80 51-112 (113)
59 PF13405 EF-hand_6: EF-hand do 97.4 0.00021 4.5E-09 43.1 3.5 26 58-83 2-27 (31)
60 cd02249 ZZ Zinc finger, ZZ typ 97.4 3.5E-05 7.6E-10 51.1 0.0 42 91-137 2-43 (46)
61 KOG4223 Reticulocalbin, calume 97.4 0.00031 6.7E-09 64.2 5.6 63 24-86 166-230 (325)
62 KOG0030 Myosin essential light 97.2 0.0019 4E-08 52.9 8.0 80 4-86 33-118 (152)
63 cd05026 S-100Z S-100Z: S-100Z 97.2 0.0011 2.4E-08 50.0 6.1 49 2-50 32-82 (93)
64 KOG4223 Reticulocalbin, calume 97.1 0.001 2.2E-08 60.9 6.4 117 7-127 63-188 (325)
65 KOG2643 Ca2+ binding protein, 97.1 0.00023 4.9E-09 67.5 2.2 56 31-87 209-264 (489)
66 cd05030 calgranulins Calgranul 97.1 0.001 2.2E-08 49.6 5.4 46 2-50 30-80 (88)
67 cd05031 S-100A10_like S-100A10 97.1 0.0013 2.9E-08 49.3 6.0 47 2-51 30-81 (94)
68 cd02345 ZZ_dah Zinc finger, ZZ 97.1 0.00015 3.3E-09 48.8 0.5 41 91-136 2-45 (49)
69 PF14788 EF-hand_10: EF hand; 97.1 0.0021 4.6E-08 43.8 6.0 47 37-83 1-48 (51)
70 cd02338 ZZ_PCMF_like Zinc fing 97.1 0.00016 3.5E-09 48.7 0.3 42 91-137 2-46 (49)
71 cd05025 S-100A1 S-100A1: S-100 97.1 0.0017 3.7E-08 48.4 6.0 46 2-50 31-81 (92)
72 cd05023 S-100A11 S-100A11: S-1 97.0 0.002 4.4E-08 48.4 6.0 46 2-50 31-81 (89)
73 cd02340 ZZ_NBR1_like Zinc fing 97.0 0.00019 4.1E-09 47.1 0.0 38 91-136 2-39 (43)
74 cd02334 ZZ_dystrophin Zinc fin 97.0 0.00025 5.5E-09 47.9 0.6 42 91-137 2-46 (49)
75 KOG0046 Ca2+-binding actin-bun 97.0 0.0033 7.2E-08 60.9 8.2 75 12-87 10-88 (627)
76 cd00051 EFh EF-hand, calcium b 96.9 0.0035 7.6E-08 40.8 5.6 43 2-47 20-62 (63)
77 cd00052 EH Eps15 homology doma 96.8 0.0035 7.6E-08 42.9 5.7 44 2-50 19-62 (67)
78 KOG0038 Ca2+-binding kinase in 96.8 0.0038 8.3E-08 51.7 6.3 57 26-82 113-175 (189)
79 KOG0040 Ca2+-binding actin-bun 96.8 0.0036 7.8E-08 66.7 7.4 68 15-82 2247-2322(2399)
80 KOG4251 Calcium binding protei 96.8 0.0023 4.9E-08 57.1 5.1 68 18-85 98-169 (362)
81 cd02339 ZZ_Mind_bomb Zinc fing 96.5 0.0009 2E-08 44.4 0.8 41 90-137 1-42 (45)
82 cd00213 S-100 S-100: S-100 dom 96.5 0.0071 1.5E-07 44.4 5.7 46 2-50 30-80 (88)
83 smart00054 EFh EF-hand, calciu 96.5 0.0037 7.9E-08 34.6 3.1 25 24-48 3-27 (29)
84 smart00027 EH Eps15 homology d 96.3 0.011 2.3E-07 44.4 5.8 44 2-50 30-73 (96)
85 cd05024 S-100A10 S-100A10: A s 96.3 0.0059 1.3E-07 46.4 4.1 30 21-50 48-77 (91)
86 PF14788 EF-hand_10: EF hand; 96.3 0.014 3.1E-07 39.7 5.5 46 2-50 5-50 (51)
87 smart00291 ZnF_ZZ Zinc-binding 96.2 0.0016 3.4E-08 42.8 0.6 40 89-135 4-43 (44)
88 smart00054 EFh EF-hand, calciu 96.1 0.0089 1.9E-07 32.9 3.3 26 58-83 2-27 (29)
89 PF00569 ZZ: Zinc finger, ZZ t 96.0 0.00075 1.6E-08 44.7 -1.6 40 90-136 5-45 (46)
90 cd02344 ZZ_HERC2 Zinc finger, 96.0 0.0024 5.2E-08 42.4 0.7 39 91-136 2-41 (45)
91 PF14658 EF-hand_9: EF-hand do 95.9 0.023 4.9E-07 40.8 5.5 45 2-49 18-64 (66)
92 COG5114 Histone acetyltransfer 95.6 0.0025 5.4E-08 58.4 -0.5 60 89-153 5-68 (432)
93 cd02337 ZZ_CBP Zinc finger, ZZ 95.4 0.0059 1.3E-07 39.7 0.6 35 91-133 2-36 (41)
94 cd02341 ZZ_ZZZ3 Zinc finger, Z 95.3 0.0044 9.6E-08 41.6 -0.1 43 91-137 2-45 (48)
95 KOG4065 Uncharacterized conser 95.2 0.081 1.8E-06 42.2 6.8 65 14-80 62-141 (144)
96 KOG2562 Protein phosphatase 2 95.2 0.037 8E-07 53.1 5.7 74 7-83 299-378 (493)
97 KOG0038 Ca2+-binding kinase in 95.2 0.038 8.3E-07 45.8 5.0 63 24-86 74-138 (189)
98 KOG0377 Protein serine/threoni 94.4 0.2 4.3E-06 48.2 8.2 67 21-87 464-578 (631)
99 cd00252 SPARC_EC SPARC_EC; ext 94.4 0.091 2E-06 41.5 5.1 27 21-47 80-106 (116)
100 KOG0751 Mitochondrial aspartat 94.2 0.21 4.5E-06 48.7 8.1 55 28-83 81-135 (694)
101 KOG1955 Ral-GTPase effector RA 94.2 0.12 2.7E-06 50.2 6.5 75 14-89 224-298 (737)
102 KOG4666 Predicted phosphate ac 94.1 0.11 2.4E-06 48.2 5.7 59 23-82 298-357 (412)
103 KOG1029 Endocytic adaptor prot 94.0 0.088 1.9E-06 53.4 5.3 71 15-86 189-259 (1118)
104 KOG4578 Uncharacterized conser 94.0 0.036 7.7E-07 51.3 2.4 64 20-84 332-398 (421)
105 KOG4582 Uncharacterized conser 93.8 0.046 9.9E-07 49.4 2.7 40 90-136 153-193 (278)
106 KOG2643 Ca2+ binding protein, 93.6 0.36 7.8E-06 46.3 8.3 79 4-83 340-452 (489)
107 cd02342 ZZ_UBA_plant Zinc fing 93.4 0.025 5.3E-07 37.2 0.2 32 90-126 1-33 (43)
108 PF09279 EF-hand_like: Phospho 93.4 0.26 5.6E-06 35.8 5.7 59 23-82 2-67 (83)
109 KOG0040 Ca2+-binding actin-bun 93.4 0.23 4.9E-06 53.8 7.1 78 2-80 2273-2357(2399)
110 KOG3555 Ca2+-binding proteogly 93.0 0.1 2.3E-06 48.6 3.6 65 15-82 244-308 (434)
111 cd02336 ZZ_RSC8 Zinc finger, Z 91.7 0.059 1.3E-06 35.7 0.3 39 91-136 2-40 (45)
112 KOG4666 Predicted phosphate ac 91.6 0.34 7.3E-06 45.0 5.1 62 21-82 259-322 (412)
113 KOG1280 Uncharacterized conser 90.5 0.092 2E-06 48.7 0.5 54 89-147 8-66 (381)
114 KOG0041 Predicted Ca2+-binding 89.3 0.71 1.5E-05 40.3 4.9 46 2-50 119-164 (244)
115 PF12763 EF-hand_4: Cytoskelet 89.2 0.62 1.3E-05 36.1 4.1 33 14-49 39-71 (104)
116 KOG4286 Dystrophin-like protei 88.5 0.5 1.1E-05 48.1 3.9 42 91-137 605-649 (966)
117 KOG0998 Synaptic vesicle prote 87.0 0.31 6.8E-06 50.4 1.6 73 14-87 276-348 (847)
118 KOG4251 Calcium binding protei 86.2 1.7 3.7E-05 39.1 5.5 63 20-82 280-343 (362)
119 KOG2419 Phosphatidylserine dec 83.9 1.2 2.7E-05 44.7 3.9 69 15-83 431-532 (975)
120 KOG4347 GTPase-activating prot 83.3 1.4 3E-05 44.2 4.0 59 19-78 553-612 (671)
121 KOG0042 Glycerol-3-phosphate d 82.4 4 8.6E-05 40.7 6.7 76 14-89 586-662 (680)
122 PF05042 Caleosin: Caleosin re 82.2 7.2 0.00016 33.1 7.4 60 22-82 97-164 (174)
123 KOG4301 Beta-dystrobrevin [Cyt 79.2 3.1 6.8E-05 38.9 4.6 46 91-141 242-290 (434)
124 KOG3866 DNA-binding protein of 78.0 2.6 5.7E-05 39.1 3.7 58 25-82 248-322 (442)
125 KOG0169 Phosphoinositide-speci 76.7 7.2 0.00016 39.8 6.7 69 18-86 133-202 (746)
126 PRK12309 transaldolase/EF-hand 76.6 4.2 9.1E-05 38.6 4.8 25 55-79 333-357 (391)
127 PF05042 Caleosin: Caleosin re 76.6 8.1 0.00018 32.8 6.0 30 55-84 95-124 (174)
128 KOG0035 Ca2+-binding actin-bun 74.6 12 0.00027 39.0 7.8 76 7-82 733-814 (890)
129 KOG4065 Uncharacterized conser 72.7 4 8.7E-05 32.7 3.0 28 19-46 115-142 (144)
130 KOG0751 Mitochondrial aspartat 70.3 29 0.00062 34.4 8.7 60 23-82 35-100 (694)
131 KOG2243 Ca2+ release channel ( 70.3 7 0.00015 43.0 4.9 58 25-82 4061-4118(5019)
132 KOG3555 Ca2+-binding proteogly 70.2 2.7 5.9E-05 39.4 1.8 61 22-82 212-276 (434)
133 KOG1707 Predicted Ras related/ 69.1 16 0.00034 36.6 6.9 27 57-83 316-342 (625)
134 KOG2562 Protein phosphatase 2 68.8 15 0.00033 35.6 6.6 58 23-80 353-420 (493)
135 PF10591 SPARC_Ca_bdg: Secrete 66.5 6.4 0.00014 30.7 3.0 24 22-45 89-112 (113)
136 KOG1029 Endocytic adaptor prot 65.7 23 0.0005 36.7 7.4 70 15-86 10-79 (1118)
137 KOG4236 Serine/threonine prote 60.9 4 8.6E-05 40.8 1.0 32 90-121 157-188 (888)
138 PF08414 NADPH_Ox: Respiratory 57.6 38 0.00081 26.3 5.7 61 22-86 31-94 (100)
139 KOG0046 Ca2+-binding actin-bun 55.2 24 0.00053 35.0 5.3 46 3-48 39-84 (627)
140 PF05517 p25-alpha: p25-alpha 54.3 85 0.0018 25.7 7.8 61 26-86 7-71 (154)
141 PF00404 Dockerin_1: Dockerin 51.3 20 0.00044 19.9 2.5 15 31-45 1-15 (21)
142 KOG1707 Predicted Ras related/ 50.8 22 0.00048 35.6 4.3 67 15-83 309-376 (625)
143 PLN02952 phosphoinositide phos 50.0 38 0.00083 34.1 5.9 52 34-86 13-67 (599)
144 KOG0035 Ca2+-binding actin-bun 47.5 59 0.0013 34.2 6.9 78 2-80 767-848 (890)
145 KOG4347 GTPase-activating prot 47.5 26 0.00057 35.4 4.3 83 5-87 486-586 (671)
146 cd08028 LARP_3 La RNA-binding 45.6 71 0.0015 23.7 5.4 45 1-46 1-46 (82)
147 KOG4004 Matricellular protein 44.7 8.6 0.00019 33.6 0.5 53 29-82 195-248 (259)
148 KOG1955 Ral-GTPase effector RA 40.1 37 0.00081 33.6 4.0 41 6-49 251-293 (737)
149 KOG0169 Phosphoinositide-speci 39.7 1.2E+02 0.0026 31.3 7.6 60 22-84 173-232 (746)
150 PF00046 Homeobox: Homeobox do 39.1 1.1E+02 0.0024 19.9 6.2 44 14-63 6-49 (57)
151 PF14513 DAG_kinase_N: Diacylg 37.4 77 0.0017 25.8 4.9 47 35-82 5-58 (138)
152 PLN02222 phosphoinositide phos 34.8 1.4E+02 0.0029 30.1 7.1 59 23-83 27-89 (581)
153 PF09069 EF-hand_3: EF-hand; 34.6 2E+02 0.0043 21.7 7.5 57 22-82 4-73 (90)
154 PF07295 DUF1451: Protein of u 33.6 1.1E+02 0.0023 25.2 5.2 85 14-110 32-137 (146)
155 cd00086 homeodomain Homeodomai 33.2 1.3E+02 0.0029 19.2 6.2 45 14-64 6-50 (59)
156 PLN02228 Phosphoinositide phos 33.1 1.6E+02 0.0035 29.5 7.2 58 23-82 26-90 (567)
157 PF09068 EF-hand_2: EF hand; 33.1 2.4E+02 0.0052 22.4 7.1 62 22-83 42-124 (127)
158 KOG0287 Postreplication repair 30.9 54 0.0012 31.0 3.3 60 118-182 61-120 (442)
159 PRK11032 hypothetical protein; 30.5 1.6E+02 0.0034 24.6 5.8 23 88-110 123-149 (160)
160 KOG4578 Uncharacterized conser 30.0 59 0.0013 30.6 3.4 32 19-50 368-399 (421)
161 PF08726 EFhand_Ca_insen: Ca2+ 28.7 76 0.0016 22.8 3.1 27 55-82 5-31 (69)
162 PRK13844 recombination protein 27.9 1.1E+02 0.0023 26.6 4.5 79 39-123 9-89 (200)
163 PLN02952 phosphoinositide phos 27.9 4.2E+02 0.0092 26.8 9.2 60 23-83 40-109 (599)
164 PF13624 SurA_N_3: SurA N-term 27.7 62 0.0013 25.5 2.9 44 5-53 90-136 (154)
165 COG5462 Predicted secreted (pe 27.0 43 0.00094 27.2 1.8 60 142-210 46-115 (138)
166 PF09068 EF-hand_2: EF hand; 26.9 1.4E+02 0.003 23.8 4.7 29 21-49 97-125 (127)
167 KOG0696 Serine/threonine prote 26.4 32 0.00068 33.7 1.0 26 89-114 121-146 (683)
168 TIGR00615 recR recombination p 26.1 1E+02 0.0022 26.6 4.0 79 39-123 5-85 (195)
169 PF12773 DZR: Double zinc ribb 26.0 39 0.00084 21.8 1.2 34 88-121 11-47 (50)
170 KOG1011 Neurotransmitter relea 25.3 54 0.0012 33.7 2.5 69 90-160 184-258 (1283)
171 KOG1954 Endocytosis/signaling 24.9 1.2E+02 0.0026 29.3 4.6 65 21-87 444-508 (532)
172 COG0353 RecR Recombinational D 24.8 1.5E+02 0.0033 25.7 4.8 70 39-113 6-76 (198)
173 KOG3866 DNA-binding protein of 24.2 1.3E+02 0.0028 28.2 4.5 72 10-83 190-271 (442)
174 PF07649 C1_3: C1-like domain; 24.0 24 0.00052 20.7 -0.1 19 91-109 2-21 (30)
175 PF09862 DUF2089: Protein of u 23.7 21 0.00045 28.2 -0.6 18 92-109 1-18 (113)
176 PRK00432 30S ribosomal protein 22.8 27 0.00058 23.4 -0.1 22 89-110 20-44 (50)
177 PRK00076 recR recombination pr 22.5 1.6E+02 0.0035 25.4 4.6 79 39-123 5-85 (196)
178 KOG1247 Methionyl-tRNA synthet 22.0 18 0.00038 35.1 -1.5 23 90-112 137-161 (567)
179 KOG0998 Synaptic vesicle prote 21.1 1.1E+02 0.0024 32.1 3.8 70 14-85 122-191 (847)
180 cd01259 PH_Apbb1ip Apbb1ip (Am 20.8 76 0.0016 25.1 2.0 22 198-219 91-112 (114)
181 PF00130 C1_1: Phorbol esters/ 20.5 28 0.00061 22.7 -0.4 21 89-109 11-34 (53)
182 PF02761 Cbl_N2: CBL proto-onc 20.0 3.9E+02 0.0084 20.1 5.9 47 36-82 21-68 (85)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.09 E-value=4.5e-10 Score=78.58 Aligned_cols=60 Identities=25% Similarity=0.514 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-----HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-----NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-----~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
++++|+.+|.|++|+|+.+||..++..++... ...+..+|+.+|.|+||.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999886432 2346777999999999999999998754
No 2
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.04 E-value=1.6e-09 Score=82.04 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
+++++...+..+|..+|.|++|.|+.+|+..+++..+.. ...+..+|+.+|.+++|.|+++||+.++..+..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 567788899999999999999999999999999988776 778999999999999999999999998875543
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-09 Score=88.85 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=70.8
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc------HHHHHHHHHhhCCCCCCceeH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR------NMCTRDFFNDLDVDGSRGLDF 75 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~------~~~l~~~Fk~~D~d~dG~Idf 75 (230)
+||+.++.+++.++++++ +..+++.+|.|++|.|++.||..++....... .+.++++|+.+|+|++|+|+.
T Consensus 28 ~el~~~lr~lg~~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~ 104 (151)
T KOG0027|consen 28 EELGAVLRSLGQNPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISA 104 (151)
T ss_pred HHHHHHHHHcCCCCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcH
Confidence 578999999999998888 89999999999999999999999998763321 237999999999999999999
Q ss_pred HHHHHHHHHh
Q 026938 76 NEVLTLYYII 85 (230)
Q Consensus 76 eEf~~lly~i 85 (230)
+||..++..+
T Consensus 105 ~el~~~l~~l 114 (151)
T KOG0027|consen 105 SELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHh
Confidence 9999877544
No 4
>PLN02964 phosphatidylserine decarboxylase
Probab=99.01 E-value=1.6e-09 Score=107.00 Aligned_cols=108 Identities=19% Similarity=0.373 Sum_probs=85.8
Q ss_pred HHHHHHHHc-ccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHH
Q 026938 4 LNEVALAYY-ESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTL 81 (230)
Q Consensus 4 Lr~al~a~~-~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~l 81 (230)
|+.++.+++ ...++++...+.++|+.+|.|++|.|+++||..++..++... +++++++|+.+|+|++|.|+++||..+
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~v 240 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAAL 240 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHH
Confidence 567788888 578888888899999999999999999999999998875322 677999999999999999999999988
Q ss_pred HHHhhcCC---Ccchhhhhhhh-----hhchhcccccc
Q 026938 82 YYIIKSGR---PICRQCKIFIT-----NEYFTCTRCFK 111 (230)
Q Consensus 82 ly~i~s~r---~~C~~C~~~l~-----g~~~~c~~Cf~ 111 (230)
+...+.+. ..|+-|+.-+. +.+++..-|++
T Consensus 241 L~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c~~ 278 (644)
T PLN02964 241 LALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLCFD 278 (644)
T ss_pred HHhcccCcchhhhchhhcCcccchhhHHHHHHHHHhhc
Confidence 76543322 46888876553 34456666653
No 5
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.97 E-value=2.1e-09 Score=91.90 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=68.7
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC-CcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAY-DRNMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~-~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
+++++++.+++...+.+ ...+.+|+.+|.|+||.|++.||+..+..... ..++.++++|+.+|.|+||+|+++|+..
T Consensus 47 ~~F~~i~~~~fp~gd~~--~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 47 EEFREIYASFFPDGDAS--KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHHCCCCCHH--HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 56888888888755444 46889999999999999999999999887732 2277899999999999999999999998
Q ss_pred HHHHh
Q 026938 81 LYYII 85 (230)
Q Consensus 81 lly~i 85 (230)
++..+
T Consensus 125 iv~~i 129 (193)
T KOG0044|consen 125 IVQAI 129 (193)
T ss_pred HHHHH
Confidence 87544
No 6
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=2.9e-09 Score=73.92 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=56.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 24 DQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 24 ~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
+.+|..+|.|++|.|+.+|+..++...+.. .+.+..+|+.+|.+++|.|+++||+.+++.+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~-~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLP-RSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 568999999999999999999999888876 77899999999999999999999999886543
No 7
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.85 E-value=1.4e-08 Score=76.65 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hcCCc-H-HHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 21 RLFDQFFESMDE-DGNGRVSYREFSEFMSL-EAYDR-N-MCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 21 ~~v~~iF~~~D~-dgdG~Is~~EF~~~l~~-~g~~~-~-~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
..+..+|+.+|. +++|+|+..||..++.. ++... . ..+..+++.+|.|+||.|+|+||..++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 447899999999 99999999999999988 65321 4 6799999999999999999999998774
No 8
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.84 E-value=2.2e-08 Score=83.27 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=56.3
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc--CCcHHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEA--YDRNMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g--~~~~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
++|..++++++.++|+.+ +.++|+.+|. +.|.|++.+|..+|.... ..+.++++++|+.||+|+||+|+..|++
T Consensus 40 ~el~~ilr~lg~~~s~~e---i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~ 115 (160)
T COG5126 40 NELGKILRSLGFNPSEAE---INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELR 115 (160)
T ss_pred HHHHHHHHHcCCCCcHHH---HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHH
Confidence 456667777777777666 6777777777 777777777777776552 1226678888888888888888888888
Q ss_pred HHHH
Q 026938 80 TLYY 83 (230)
Q Consensus 80 ~lly 83 (230)
.++.
T Consensus 116 ~vl~ 119 (160)
T COG5126 116 RVLK 119 (160)
T ss_pred HHHH
Confidence 6553
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.84 E-value=2e-08 Score=83.59 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.+...|+.||.|+||+|+..|+..+++.+|... ++.+..+++.+|.|+||.|+++||++++
T Consensus 93 el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 93 ELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 389999999999999999999999999987653 7789999999999999999999999865
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.78 E-value=2.8e-08 Score=74.57 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=58.4
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-hcC----C-cHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcc
Q 026938 21 RLFDQFFESMD-EDGNG-RVSYREFSEFMSL-EAY----D-RNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPIC 92 (230)
Q Consensus 21 ~~v~~iF~~~D-~dgdG-~Is~~EF~~~l~~-~g~----~-~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C 92 (230)
..+.++|+.+| .|++| .|+.+|+..+++. ++. . ..+.++.+|+.+|.|++|.|+|+||+.++..+ +
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~------~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL------T 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH------H
Confidence 34789999997 99999 5999999999975 432 1 26679999999999999999999999877432 3
Q ss_pred hhhhhhhh
Q 026938 93 RQCKIFIT 100 (230)
Q Consensus 93 ~~C~~~l~ 100 (230)
.-|.++.|
T Consensus 83 ~~~~~~~~ 90 (92)
T cd05025 83 VACNNFFW 90 (92)
T ss_pred HHHHHHhc
Confidence 35565544
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.78 E-value=4.6e-08 Score=73.54 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=54.6
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 21 RLFDQFFESMD-EDGNG-RVSYREFSEFMSL-----EAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 21 ~~v~~iF~~~D-~dgdG-~Is~~EF~~~l~~-----~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
..+.++|+.+| .|++| .|+.+|+..+|+. ++..+ ++.+..+++.+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34689999998 79999 5999999999998 66543 56699999999999999999999998774
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.75 E-value=5.1e-08 Score=79.36 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
++.++...+..+|+.+|+|++|+|+..|+..+++.++..+ ...+..+++.+|.|++|.|+++||+.++..
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 4566677899999999999999999999999999998875 677999999999999999999999988753
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.75 E-value=5.8e-08 Score=73.47 Aligned_cols=63 Identities=25% Similarity=0.443 Sum_probs=51.9
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHh-c----CC-cHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 21 RLFDQFFESMD-EDGNG-RVSYREFSEFMSLE-A----YD-RNMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 21 ~~v~~iF~~~D-~dgdG-~Is~~EF~~~l~~~-g----~~-~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
..+.++|..+| .|++| +|+.+|+..++... + .. ....+..+++.+|.|+||.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 34568899999 78998 59999999999662 1 11 256799999999999999999999998773
No 14
>PTZ00183 centrin; Provisional
Probab=98.68 E-value=1.8e-07 Score=74.81 Aligned_cols=73 Identities=23% Similarity=0.426 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q 026938 13 ESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYII 85 (230)
Q Consensus 13 ~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i 85 (230)
...++++...+..+|..+|.+++|.|+..||..++...+... ...+..+|..+|.+++|.|+++||+.+++..
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 456677777788888888888888888888888887765432 5567778888888888888888888776543
No 15
>PTZ00183 centrin; Provisional
Probab=98.67 E-value=1.7e-07 Score=74.98 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=66.0
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--cCCcHHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE--AYDRNMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~--g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
+||+.++..++...+... +..+|..+|.+++|.|+++||..++... .......++.+|+.+|.+++|.|+.+||.
T Consensus 37 ~e~~~~l~~~g~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~ 113 (158)
T PTZ00183 37 KELKVAMRSLGFEPKKEE---IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLK 113 (158)
T ss_pred HHHHHHHHHhCCCCCHHH---HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 578888888877676654 8899999999999999999999987654 22225678999999999999999999999
Q ss_pred HHHH
Q 026938 80 TLYY 83 (230)
Q Consensus 80 ~lly 83 (230)
.++.
T Consensus 114 ~~l~ 117 (158)
T PTZ00183 114 RVAK 117 (158)
T ss_pred HHHH
Confidence 8774
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.67 E-value=1.2e-07 Score=70.16 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-hcCC-----cHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 17 DEERRLFDQFFESMDE--DGNGRVSYREFSEFMSL-EAYD-----RNMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 17 eeek~~v~~iF~~~D~--dgdG~Is~~EF~~~l~~-~g~~-----~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
+++...+..+|..+|. |++|.|+.+||..++.. .+.. ....+..+++.+|.+++|.|+|+||+.++.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 3455668899999999 89999999999999875 3321 156789999999999999999999998774
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.67 E-value=1.2e-07 Score=71.55 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----hcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 21 RLFDQFFESMDE-DG-NGRVSYREFSEFMSL-----EAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 21 ~~v~~iF~~~D~-dg-dG~Is~~EF~~~l~~-----~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
..+..+|..+|. |+ +|.|+.+|+..++.. ++..+ .+.+..+++.+|.+++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 447899999997 97 699999999999875 23322 66799999999999999999999998763
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.67 E-value=1.5e-07 Score=62.21 Aligned_cols=60 Identities=25% Similarity=0.436 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
+..+|..+|.+++|.|+++||..++..++... .+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999998875443 5668889999999999999999998654
No 19
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.66 E-value=1.1e-07 Score=75.23 Aligned_cols=63 Identities=17% Similarity=0.356 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 17 DEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 17 eeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
+..+..+..+|..+|.|+||.|+.+|+..+. +... ...+..+|..+|.|+||.||++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~-e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPN-EHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccch-HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4566778999999999999999999999876 3333 5668889999999999999999999877
No 20
>PTZ00184 calmodulin; Provisional
Probab=98.63 E-value=2e-07 Score=73.44 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
.+++++...+...|..+|.+++|.|+.+||..++..++..+ ...+..+|+.+|.+++|.|+++||+.++..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 35677778899999999999999999999999988776543 567899999999999999999999987653
No 21
>PTZ00184 calmodulin; Provisional
Probab=98.59 E-value=4.8e-07 Score=71.21 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=64.8
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cC-CcHHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE-AY-DRNMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~-~~~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
+||+.++..++...+++. +..+|+.+|.+++|.|+++||..++... .. .....++.+|+.+|.+++|.|+.+||.
T Consensus 31 ~e~~~~l~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~ 107 (149)
T PTZ00184 31 KELGTVMRSLGQNPTEAE---LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELR 107 (149)
T ss_pred HHHHHHHHHhCCCCCHHH---HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHH
Confidence 567777777776666544 8999999999999999999999988754 21 114568899999999999999999999
Q ss_pred HHHHH
Q 026938 80 TLYYI 84 (230)
Q Consensus 80 ~lly~ 84 (230)
.++..
T Consensus 108 ~~l~~ 112 (149)
T PTZ00184 108 HVMTN 112 (149)
T ss_pred HHHHH
Confidence 87743
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.57 E-value=4.1e-07 Score=68.55 Aligned_cols=63 Identities=27% Similarity=0.411 Sum_probs=51.8
Q ss_pred HHHHHHHHH-hCCCCCC-cccHHHHHHHHHHhc-----C-CcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 21 RLFDQFFES-MDEDGNG-RVSYREFSEFMSLEA-----Y-DRNMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 21 ~~v~~iF~~-~D~dgdG-~Is~~EF~~~l~~~g-----~-~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
..+..+|+. +|.+++| .|+.+||..++.... . .....+..+++.+|.|+||.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 345788988 7888987 999999999997751 1 1146789999999999999999999998764
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.54 E-value=5.2e-07 Score=67.80 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=52.9
Q ss_pred HHHHHHHHhCC-CC-CCcccHHHHHHHHHH---hcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 22 LFDQFFESMDE-DG-NGRVSYREFSEFMSL---EAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 22 ~v~~iF~~~D~-dg-dG~Is~~EF~~~l~~---~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
.+-.+|..+|. |+ +|+|+.+||..++.. +|.+. .+++.++|+.+|.|++|.|+|+||+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 34588999998 77 899999999999963 34432 678999999999999999999999987754
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.53 E-value=3.2e-07 Score=61.83 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=42.7
Q ss_pred CCCcccHHHHHHHHHHhcCC-c-HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 34 GNGRVSYREFSEFMSLEAYD-R-NMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 34 gdG~Is~~EF~~~l~~~g~~-~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
.+|.|+.+||..++..+|.. . ++++..+|..+|.|++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999776654 3 67799999999999999999999998763
No 25
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.48 E-value=8.7e-07 Score=75.57 Aligned_cols=78 Identities=18% Similarity=0.364 Sum_probs=60.4
Q ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCcH-------HHHHHHHHhhCCCCCCcee
Q 026938 3 DLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE-AYDRN-------MCTRDFFNDLDVDGSRGLD 74 (230)
Q Consensus 3 ELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~~~~-------~~l~~~Fk~~D~d~dG~Id 74 (230)
++-+.+..+....+.++| ++-+|+.+|.+++|.|+.+|+..++..+ +.... .-+..+|..+|.|+||.|+
T Consensus 88 ~Fv~~ls~f~~~~~~~~K--l~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 88 EFVRLLSVFSPKASKREK--LRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HHHHHHhhhcCCccHHHH--HHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 444555566555555544 7889999999999999999999999887 22111 1266789999999999999
Q ss_pred HHHHHHHH
Q 026938 75 FNEVLTLY 82 (230)
Q Consensus 75 feEf~~ll 82 (230)
|+||..++
T Consensus 166 feEf~~~v 173 (187)
T KOG0034|consen 166 FEEFCKVV 173 (187)
T ss_pred HHHHHHHH
Confidence 99999876
No 26
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=1e-06 Score=76.31 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=64.4
Q ss_pred hHHHHHHHHH-cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 2 EDLNEVALAY-YESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 2 eELr~al~a~-~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
+||++++..- +...+.+. ++.+..+||.+.+|+|++.||+.+.+. ...++.+|+.+|+|++|.|+..||.+
T Consensus 77 ~eLq~aLsn~~~~~Fs~~T---crlmI~mfd~~~~G~i~f~EF~~Lw~~-----i~~Wr~vF~~~D~D~SG~I~~sEL~~ 148 (221)
T KOG0037|consen 77 KELQQALSNGTWSPFSIET---CRLMISMFDRDNSGTIGFKEFKALWKY-----INQWRNVFRTYDRDRSGTIDSSELRQ 148 (221)
T ss_pred HHHHHHhhcCCCCCCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHHH-----HHHHHHHHHhcccCCCCcccHHHHHH
Confidence 6788888744 46677777 889999999999999999999998775 45688999999999999999999999
Q ss_pred HHHHh
Q 026938 81 LYYII 85 (230)
Q Consensus 81 lly~i 85 (230)
.++.+
T Consensus 149 Al~~~ 153 (221)
T KOG0037|consen 149 ALTQL 153 (221)
T ss_pred HHHHc
Confidence 88643
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.6e-06 Score=70.81 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTL 81 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~l 81 (230)
+++++++.++..|..||.+++|+|+.+|+...++.+|+.+ ..++.++...+|+++.|.|+|++|+..
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~ 94 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRV 94 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHH
Confidence 3444444455555555555555555555544444444432 233444455555555555555555444
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=4.8e-06 Score=69.19 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=62.0
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cC-CcHHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE-AY-DRNMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~-~~~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
+||+-|+.++|..+..++ +..+...+|+++.|.|++++|...+... +. .+.++++.+|+.+|.|++|.|++.+|+
T Consensus 53 ~EL~vAmralGFE~~k~e---i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lk 129 (172)
T KOG0028|consen 53 EELKVAMRALGFEPKKEE---ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLK 129 (172)
T ss_pred HHHHHHHHHcCCCcchHH---HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHH
Confidence 578888888887776666 7888888888888999999988875443 22 236778888998998999999888888
Q ss_pred HHHHH
Q 026938 80 TLYYI 84 (230)
Q Consensus 80 ~lly~ 84 (230)
.+..-
T Consensus 130 rvake 134 (172)
T KOG0028|consen 130 RVAKE 134 (172)
T ss_pred HHHHH
Confidence 77643
No 29
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.28 E-value=1.5e-07 Score=88.30 Aligned_cols=73 Identities=27% Similarity=0.632 Sum_probs=64.4
Q ss_pred CCCcchhhhhhhhhhc-hhccccccccccccchhhhhcc-cCC-CccccCchhhHHhh-hhhhhHHHHHH-----HHHhc
Q 026938 88 GRPICRQCKIFITNEY-FTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSLEQFVD-NFALLECLRKE-----ALEEN 158 (230)
Q Consensus 88 ~r~~C~~C~~~l~g~~-~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~~~f~d-n~~l~~~~~~~-----~~~~~ 158 (230)
+++.|+.|...+.|.+ ++|..| -.|+||+.||+ |.| |+|...|.|+++.. +|.++.++|-+ +|++.
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeC-----p~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~ 87 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAEC-----PDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDPSWTADEEILLLEAA 87 (438)
T ss_pred CCCCCccHhHHhccceEEEeecC-----CCcchhHHHHhcccccCCCCCCCCceeecCCCCCCCCCCCChHHHHHHHHHH
Confidence 5799999999999998 999999 88999999999 888 99999999999997 79999977765 77777
Q ss_pred ccCCCCC
Q 026938 159 REDGYYE 165 (230)
Q Consensus 159 ~~~~~~~ 165 (230)
..=|.||
T Consensus 88 ~t~G~GN 94 (438)
T KOG0457|consen 88 ETYGFGN 94 (438)
T ss_pred HHhCCCc
Confidence 6666655
No 30
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.24 E-value=3.9e-06 Score=65.16 Aligned_cols=71 Identities=27% Similarity=0.423 Sum_probs=61.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
.+++++++.+..+|+..|. ++|.|+-++-..++...+.+ .+.+..++...|.|+||++|++||...++.+.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~-~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP-RDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS-HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC-HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 3567788889999999985 68999999999999888888 88899999999999999999999999988664
No 31
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.23 E-value=5e-06 Score=71.53 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcch
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPICR 93 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C~ 93 (230)
.+..+.+.+..+|+.||.+.||+|++.|+..+|.++|-+- .--++.+.+..|.|.||+|+|-||.-++.....+...|+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc
Confidence 4556667788999999999999999999999999997652 334889999999999999999999988776666777775
Q ss_pred h
Q 026938 94 Q 94 (230)
Q Consensus 94 ~ 94 (230)
.
T Consensus 173 s 173 (244)
T KOG0041|consen 173 S 173 (244)
T ss_pred h
Confidence 4
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.22 E-value=3.9e-06 Score=56.46 Aligned_cols=45 Identities=29% Similarity=0.513 Sum_probs=41.0
Q ss_pred hHHHHHHHHHccc-CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 026938 2 EDLNEVALAYYES-GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSL 49 (230)
Q Consensus 2 eELr~al~a~~~~-~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~ 49 (230)
++|+.++..++.. +++++ +..+|..+|.|++|.|+++||..++..
T Consensus 8 ~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6899999888888 99988 999999999999999999999998764
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.21 E-value=2e-06 Score=51.82 Aligned_cols=27 Identities=33% Similarity=0.828 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSL 49 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~ 49 (230)
++.+|+.+|+|+||+|+++||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455566666666666666666655543
No 34
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.18 E-value=3.5e-06 Score=72.23 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----cC---C-----cHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE----AY---D-----RNMCTRDFFNDLDVDGSRGLDFNEVLTL 81 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~----g~---~-----~~~~l~~~Fk~~D~d~dG~IdfeEf~~l 81 (230)
..+.+++ +...|+.+|.|+||.|+.+|+..++... +. + +.+.+..+|+.+|.|+||.||.+||...
T Consensus 95 rGt~eek--l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 95 RGTLEEK--LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred CCcHHHH--hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 4555555 5677999999999999999998877554 32 1 1455888999999999999999999976
Q ss_pred H
Q 026938 82 Y 82 (230)
Q Consensus 82 l 82 (230)
.
T Consensus 173 ~ 173 (193)
T KOG0044|consen 173 C 173 (193)
T ss_pred h
Confidence 5
No 35
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.14 E-value=3.9e-06 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.3
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 57 CTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 57 ~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
+++++|+.+|+|+||+|+++||+.++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 367899999999999999999998774
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.11 E-value=1.6e-05 Score=59.51 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCC--CCCcccHHHHHHHHHH-hcCCc-----HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 22 LFDQFFESMDED--GNGRVSYREFSEFMSL-EAYDR-----NMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 22 ~v~~iF~~~D~d--gdG~Is~~EF~~~l~~-~g~~~-----~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
.+-.+|..++.. .+|.|+.+||..++.. ++... ...+..+|+.+|.|++|.|+|+||+.++.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 356889998865 4789999999999963 33221 46699999999999999999999998774
No 37
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.00 E-value=2.1e-05 Score=74.00 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
...+..+.++..+|+.+|.|+||.|+.+||.. ...+|..+|.|+||.|+++||..++.
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 44556677899999999999999999999942 34689999999999999999998774
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=97.95 E-value=3.4e-05 Score=55.29 Aligned_cols=58 Identities=21% Similarity=0.456 Sum_probs=52.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhcC-Cc-HHHHHHHHHhhCCCCC-CceeHHHHHHHH
Q 026938 25 QFFESMDEDGNGRVSYREFSEFMSLEAY-DR-NMCTRDFFNDLDVDGS-RGLDFNEVLTLY 82 (230)
Q Consensus 25 ~iF~~~D~dgdG~Is~~EF~~~l~~~g~-~~-~~~l~~~Fk~~D~d~d-G~IdfeEf~~ll 82 (230)
.+|..+|.++.|.|...+++.+|+..+. .+ +..++.+.+.+|.++. |.|+++.|..++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 4699999999999999999999999966 44 6679999999999998 999999998776
No 39
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.92 E-value=4.4e-05 Score=66.25 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
.++.+|+.+|.|++|.|+..|+..+|..+|+.. ++-...+++.+|..++|.|.|++|+.++.+++.
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 478999999999999999999999999998865 566788999999999999999999998876654
No 40
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.90 E-value=3.3e-05 Score=73.23 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC----Cc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcC
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSLEAY----DR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSG 88 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~----~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~ 88 (230)
+-++.+|+.+|.|++|.||.+||..+.+.++- .. ...+.++-+.+|.|+||.||++||+..++.+..+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 44678999999999999999999998776621 11 5668888999999999999999999999877653
No 41
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.77 E-value=5e-05 Score=57.29 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=40.3
Q ss_pred hHHHHHHHH-HcccCCH-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALA-YYESGTD-EERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a-~~~~~se-eek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+..+.+ ++..+++ ++ +..+++.+|.|+||.|+|+||..++..+
T Consensus 29 ~ELk~ll~~elg~~ls~~~~---v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 29 SEFQELLTQQLPHLLKDVEG---LEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhhhhccCHHH---HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 589999988 8877776 44 8999999999999999999999998775
No 42
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=0.0001 Score=60.09 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCC--CCCceeHHHHHHHHHHhhcCCCc
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVD--GSRGLDFNEVLTLYYIIKSGRPI 91 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d--~dG~IdfeEf~~lly~i~s~r~~ 91 (230)
.+++....++++|..||..+||+|+..+-...|+.+|.+| +..+.+....++++ +--.|+||+|+.++..+...+.+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 3455567799999999999999999999999999998876 56678888888877 55789999999988766655544
Q ss_pred chhhhhhhhhhchhcccccccc
Q 026938 92 CRQCKIFITNEYFTCTRCFKTR 113 (230)
Q Consensus 92 C~~C~~~l~g~~~~c~~Cf~~~ 113 (230)
| ..++|+.--.-||++
T Consensus 85 ~------t~edfvegLrvFDke 100 (152)
T KOG0030|consen 85 G------TYEDFVEGLRVFDKE 100 (152)
T ss_pred C------cHHHHHHHHHhhccc
Confidence 4 344454444455553
No 43
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.76 E-value=0.00025 Score=53.93 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHh-----cC-CcHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLE-----AY-DRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~-----g~-~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
+-.+|..+-- ..+.++..||..++..- .. ..+..+..+|+.+|.|+||.|+|+||..++..
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567887763 35689999999998543 11 11567899999999999999999999988743
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.73 E-value=0.00012 Score=62.54 Aligned_cols=64 Identities=25% Similarity=0.392 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHHhcC-Cc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 23 FDQFFESMDEDGNGR-VSYREFSEFMSLEAY-DR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 23 v~~iF~~~D~dgdG~-Is~~EF~~~l~~~g~-~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
..+++..+|.+++|. |++++|+..+..... .. .++++-+|+.+|.+++|.|+.+|+..++..+-
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 467788888888887 899998888877622 21 44788899999999999999999998885443
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.72 E-value=7e-05 Score=51.97 Aligned_cols=46 Identities=35% Similarity=0.653 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcccCC-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 026938 2 EDLNEVALAYYESGT-DEERRLFDQFFESMDEDGNGRVSYREFSEFM 47 (230)
Q Consensus 2 eELr~al~a~~~~~s-eeek~~v~~iF~~~D~dgdG~Is~~EF~~~l 47 (230)
+||++++..++...+ ++....+..+|+.+|.|+||.|+++||..++
T Consensus 20 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 20 EELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 689999999987664 3455678888999999999999999998864
No 46
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00019 Score=67.48 Aligned_cols=68 Identities=13% Similarity=0.266 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC-c-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYD-R-NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~-~-~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
..++-...++.+|+.+|.+++|.|+..++...+..+..+ + .+..+.+|...|.|.||.+||+||...+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 344444556667777777777777777766666555332 1 3445666777777777777777776654
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.66 E-value=7.2e-05 Score=45.12 Aligned_cols=26 Identities=23% Similarity=0.646 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMS 48 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~ 48 (230)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45666666666666666666666665
No 48
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.65 E-value=0.00014 Score=60.29 Aligned_cols=90 Identities=10% Similarity=0.177 Sum_probs=64.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCC
Q 026938 12 YESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRP 90 (230)
Q Consensus 12 ~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~ 90 (230)
...++..+.+++++.|+.+|.|+||.|+.+++..++..+|... ++.+..+++. ..|.|+|--|++++--.-.
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~--- 95 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLN--- 95 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhc---
Confidence 4456778889999999999999999999999999998886643 4556666654 4677888888877632211
Q ss_pred cchhhhhhhhhhchhcccccccc
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTR 113 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~ 113 (230)
+..--++++..++|||.+
T Consensus 96 -----gtdpe~~I~~AF~~FD~~ 113 (171)
T KOG0031|consen 96 -----GTDPEEVILNAFKTFDDE 113 (171)
T ss_pred -----CCCHHHHHHHHHHhcCcc
Confidence 223345566667777663
No 49
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.60 E-value=9.2e-05 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=11.4
Q ss_pred HHHHhhCCCCCCceeHHHHHH
Q 026938 60 DFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 60 ~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
.+|+.+|.|+||.||++||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 455555555555555555554
No 50
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.57 E-value=1.7e-05 Score=53.33 Aligned_cols=44 Identities=34% Similarity=0.813 Sum_probs=36.7
Q ss_pred cchhhhhhhhh-hchhccccccccccccchhhhhcc-cCC-CccccCchhhH
Q 026938 91 ICRQCKIFITN-EYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSLEQ 139 (230)
Q Consensus 91 ~C~~C~~~l~g-~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~~~ 139 (230)
.|+.|...+.+ ..++|.+| .+|++|..||+ +.| ++|+..|.|.+
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C-----~d~dLC~~Cf~~g~~~~~H~~~H~~~~ 48 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAEC-----PDFDLCLECFSAGAEIGKHRNDHNYRV 48 (49)
T ss_pred CCCCcCCCCCCCcEEECCCC-----CCcchhHHhhhCcCCCCCCCCCCCeEe
Confidence 58999987654 88999999 78999999999 666 78888888653
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.56 E-value=0.0001 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.861 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFM 47 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l 47 (230)
++++|+.+|.|+||.||.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3578999999999999999998754
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=97.56 E-value=0.0003 Score=70.02 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc-CCc-HHH---HHHHHHhhCCCCCCceeHHHHHHHHHHh
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEA-YDR-NMC---TRDFFNDLDVDGSRGLDFNEVLTLYYII 85 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g-~~~-~~~---l~~~Fk~~D~d~dG~IdfeEf~~lly~i 85 (230)
..+..+.+.+.+.|..+|+|+||.| +..+++.++ ..+ +.+ ++.+|+.+|.|++|.|+++||+.++..+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3566677889999999999999997 666777777 343 332 7899999999999999999999888644
No 53
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.55 E-value=0.00064 Score=56.44 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=64.1
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--cCCcHHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE--AYDRNMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~--g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
++||..+.++|...++++ +..+++. ..|.|+|.-|..++... +.++++.+..+|+.||.+++|.|+-+.++
T Consensus 52 eDL~d~~aSlGk~~~d~e---lDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lr 124 (171)
T KOG0031|consen 52 EDLRDMLASLGKIASDEE---LDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLR 124 (171)
T ss_pred HHHHHHHHHcCCCCCHHH---HHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHH
Confidence 578899999999888887 7777775 58899999999988655 55557789999999999999999999999
Q ss_pred HHHHH
Q 026938 80 TLYYI 84 (230)
Q Consensus 80 ~lly~ 84 (230)
.++..
T Consensus 125 e~Ltt 129 (171)
T KOG0031|consen 125 ELLTT 129 (171)
T ss_pred HHHHH
Confidence 88754
No 54
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.54 E-value=0.00023 Score=53.45 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=39.8
Q ss_pred hHHHHHHHH---HcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALA---YYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a---~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||++++.. ++...++++ +.++|+.+|.|++|.|+++||..++..+
T Consensus 32 ~EL~~~l~~~~~lg~k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 32 KELKELIQKELTIGSKLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHhcCCCCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 588998863 577788877 8999999999999999999999988765
No 55
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.46 E-value=0.00036 Score=52.32 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=40.2
Q ss_pred hHHHHHHHH-----HcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALA-----YYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a-----~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+.++.+ ++...++++ +.++++.+|.|+||.|+|+||..++...
T Consensus 30 ~eL~~ll~~~~~~~lg~~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 30 SELKELINNELSHFLEEIKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhHHHhcCCCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 588999998 777777776 8999999999999999999999887654
No 56
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00038 Score=65.61 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTL 81 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~l 81 (230)
...+|+.+|.|.||.++++||..++... +..+..+|..+|.+.||.|+.+|+...
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----E~~l~~~F~~iD~~hdG~i~~~Ei~~~ 107 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLDNK----ELELYRIFQSIDLEHDGKIDPNEIWRY 107 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHHHh----HHHHHHHHhhhccccCCccCHHHHHHH
Confidence 4555566666666666666665555432 333444455555555555554444443
No 57
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.44 E-value=4.3e-05 Score=51.43 Aligned_cols=41 Identities=22% Similarity=0.648 Sum_probs=35.9
Q ss_pred cchhhhhhhhhhchhccccccccccccchhhhhcc-cCC-CccccCch
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHS 136 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~ 136 (230)
.|++|...+.+.-++|-+| ..|++|..||. |.| +.|+.+|.
T Consensus 2 ~CdgC~~~~~~~RykCl~C-----~d~DlC~~Cf~~g~~~~~H~~~Hp 44 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQC-----TDMDLCKTCFLGGVKPEGHEDDHE 44 (48)
T ss_pred CCCCCCCcCCCceEECCCC-----CCchhHHHHHhCCccCCCCCCCCC
Confidence 6999999888888999999 57999999999 766 77887887
No 58
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.42 E-value=7.5e-05 Score=58.70 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 18 EERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 18 eek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
..+..+.-.|..+|.|+||.|+..|+..+...+... +.-++.+|+..|.|+||.||..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~-e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPP-EHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTT-GGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhh-HHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345668889999999999999999998776544222 55688899999999999999999864
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.42 E-value=0.00021 Score=43.08 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 58 TRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 58 l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
++.+|+.+|.|+||+|+++||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 67899999999999999999998774
No 60
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=97.41 E-value=3.5e-05 Score=51.06 Aligned_cols=42 Identities=21% Similarity=0.581 Sum_probs=34.8
Q ss_pred cchhhhhhhhhhchhccccccccccccchhhhhcccCCCccccCchh
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHSL 137 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~~ 137 (230)
.|+.|+..++|..++|.+| .+|++|..||+...+.|+..|.|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C-----~d~dLC~~Cf~~~~~~H~~~H~~ 43 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVC-----EDFDLCSSCYAKGKKGHPPDHSF 43 (46)
T ss_pred CCcCCCCCCcCCEEECCCC-----CCCcCHHHHHCcCcCCCCCCCCE
Confidence 5899999999999999999 68999999999653455556764
No 61
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00031 Score=64.19 Aligned_cols=63 Identities=22% Similarity=0.518 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 24 DQFFESMDEDGNGRVSYREFSEFMSLEAYDR--NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 24 ~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~--~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
+.-|+..|.|+||.++.+||.+++..-..+. .--++.....+|+|+||+|+++||+.=+|...
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 5789999999999999999999986543321 22367788999999999999999998877654
No 62
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.22 E-value=0.0019 Score=52.88 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhcCCc----HHHHHHHHHhhCCCCCCceeHHH
Q 026938 4 LNEVALAYYESGTDEERRLFDQFFESMDED--GNGRVSYREFSEFMSLEAYDR----NMCTRDFFNDLDVDGSRGLDFNE 77 (230)
Q Consensus 4 Lr~al~a~~~~~seeek~~v~~iF~~~D~d--gdG~Is~~EF~~~l~~~g~~~----~~~l~~~Fk~~D~d~dG~IdfeE 77 (230)
...+++++|.++++.+ +.+....++.+ +--+|+|++|.-++..++... -++.-+-++.||++++|.|..-|
T Consensus 33 ~gdvlRalG~nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~ae 109 (152)
T KOG0030|consen 33 VGDVLRALGQNPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAE 109 (152)
T ss_pred HHHHHHHhcCCCcHHH---HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHH
Confidence 4567999999999887 78888888776 456899999999887763321 45677789999999999999999
Q ss_pred HHHHHHHhh
Q 026938 78 VLTLYYIIK 86 (230)
Q Consensus 78 f~~lly~i~ 86 (230)
++.++..+-
T Consensus 110 LRhvLttlG 118 (152)
T KOG0030|consen 110 LRHVLTTLG 118 (152)
T ss_pred HHHHHHHHH
Confidence 999886543
No 63
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.20 E-value=0.0011 Score=49.98 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=35.9
Q ss_pred hHHHHHHHHH-cccC-CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAY-YESG-TDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~-~~~~-seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+.++... +..+ .......+..+++.+|.|+||.|+++||..++..+
T Consensus 32 ~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 32 GELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5788877663 2211 11122348999999999999999999999998776
No 64
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.001 Score=60.91 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=78.6
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q 026938 7 VALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYII 85 (230)
Q Consensus 7 al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i 85 (230)
.+..+-+..+++.+..+..++..+|.++||.|+..|+..++....... ......-|..+|+|.||.|+|+|+...+|..
T Consensus 63 ~~~~fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 63 FADEFDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGR 142 (325)
T ss_pred hhhhhhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhc
Confidence 344444455666777899999999999999999999999876542211 3456778999999999999999999988864
Q ss_pred hcCC---C---cchhhhhhhh--hhchhccccccccccccchhhhhcccC
Q 026938 86 KSGR---P---ICRQCKIFIT--NEYFTCTRCFKTRSFPYNICLECFRGE 127 (230)
Q Consensus 86 ~s~r---~---~C~~C~~~l~--g~~~~c~~Cf~~~~~~~~~c~~cf~~~ 127 (230)
.... + .-..-.+.++ .-.|+... -+....+.+++|+.-
T Consensus 143 ~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD----~d~dg~lt~EEF~aF 188 (325)
T KOG4223|consen 143 VDLPDEFPDEEDNEEYKKMIARDEERFKAAD----QDGDGSLTLEEFTAF 188 (325)
T ss_pred ccCccccccchhcHHHHHHHHHHHHHHhhcc----cCCCCcccHHHHHhc
Confidence 3210 0 0011122232 11233221 257778888999875
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00023 Score=67.45 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=47.7
Q ss_pred CCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 31 DEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 31 D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
|.+.+|.|||.||+-++..+..+ .....-+|++||.|+||.||.+||.+++.++.+
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p-~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIP-ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccC-cccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 45678999999999988877665 555666899999999999999999999977665
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.13 E-value=0.001 Score=49.62 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=36.6
Q ss_pred hHHHHHHH-HHcccCC----HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVAL-AYYESGT----DEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~-a~~~~~s----eeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+.++. .++..++ +++ +..+|+.+|.|++|.|+++||..++..+
T Consensus 30 ~El~~ll~~~~g~~~t~~~~~~~---v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 30 KEFKQLVEKELPNFLKKEKNQKA---IDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhhHhhccCCCHHH---HHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 57888886 4444444 444 8999999999999999999999988754
No 67
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.12 E-value=0.0013 Score=49.26 Aligned_cols=47 Identities=15% Similarity=0.382 Sum_probs=37.8
Q ss_pred hHHHHHHHH-----HcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhc
Q 026938 2 EDLNEVALA-----YYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEA 51 (230)
Q Consensus 2 eELr~al~a-----~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g 51 (230)
+||+.++.+ ++...++++ +..+++.+|.|++|.|+++||..++...+
T Consensus 30 ~El~~~l~~~~g~~lg~~~s~~e---i~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 30 KELKKLMEKELSEFLKNQKDPMA---VDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhHHHhhccccHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 578888876 344455555 89999999999999999999999887653
No 68
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=97.10 E-value=0.00015 Score=48.83 Aligned_cols=41 Identities=34% Similarity=0.826 Sum_probs=34.6
Q ss_pred cchhhhh-hhhhhchhccccccccccccchhhhhcc-cCC-CccccCch
Q 026938 91 ICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHS 136 (230)
Q Consensus 91 ~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~ 136 (230)
.|+.|.. -+.|.-++|..| ..|+||..||+ +.+ ++|+..|.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C-----~dydLC~~Cf~~~~~~~~H~~~H~ 45 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVC-----RDYSLCLGCYTKGRETKRHNSLHI 45 (49)
T ss_pred cCCCCCCCCceEeeEECCCC-----CCcCchHHHHhCCCcCCCCCCCCC
Confidence 6899998 788988999999 78999999999 544 67766776
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.09 E-value=0.0021 Score=43.77 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 37 RVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 37 ~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
++++.|...+|+.++... +..+..+|+..|++++|.++.+||...+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 468889888888886653 55678899999999999999999987653
No 70
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=97.06 E-value=0.00016 Score=48.70 Aligned_cols=42 Identities=24% Similarity=0.776 Sum_probs=35.2
Q ss_pred cchhhh-hhhhhhchhccccccccccccchhhhhcc-cCC-CccccCchh
Q 026938 91 ICRQCK-IFITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSL 137 (230)
Q Consensus 91 ~C~~C~-~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~ 137 (230)
.|++|+ ..+.|.-++|..| ..|++|..||. +.+ +.|+..|.|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C-----~d~dlC~~Cf~~~~~~~~H~~~H~~ 46 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLIC-----YDYDLCADCYDSGVTTERHLFDHPM 46 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCC-----CCCccchhHHhCCCcCCCCCCCCCE
Confidence 699999 6788999999999 78999999999 544 677767764
No 71
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.06 E-value=0.0017 Score=48.43 Aligned_cols=46 Identities=20% Similarity=0.520 Sum_probs=37.1
Q ss_pred hHHHHHHHH-Hcc----cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALA-YYE----SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a-~~~----~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+.++.+ ++. ..++++ +..+|+.+|.|++|.|+++||..++..+
T Consensus 31 ~El~~~l~~~lg~~~~~~~s~~~---v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 31 KELKDLLQTELSDFLDAQKDADA---VDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 578888876 443 235554 8999999999999999999999988765
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.01 E-value=0.002 Score=48.38 Aligned_cols=46 Identities=11% Similarity=0.304 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcc-----cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAYYE-----SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~~~-----~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+..+..... ..++. .+..+++.+|.|+||.|+++||..++..+
T Consensus 31 ~Elk~ll~~e~~~~~~~~~~~~---~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 31 TEFLSFMNTELASFTKNQKDPG---VLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhhhHhhcCCCCHH---HHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567777766532 22333 48899999999999999999999988765
No 73
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=96.97 E-value=0.00019 Score=47.11 Aligned_cols=38 Identities=26% Similarity=0.620 Sum_probs=32.9
Q ss_pred cchhhhhhhhhhchhccccccccccccchhhhhcccCCCccccCch
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHS 136 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~ 136 (230)
.|++|+..+.|.-++|..| .+|++|..||... .| ..|.
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C-----~d~dLC~~C~~~~--~H-~~H~ 39 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVC-----PDYDLCESCEAKG--VH-PEHA 39 (43)
T ss_pred CCCCCCCcCcCCeEECCCC-----CCccchHHhhCcC--CC-CCCC
Confidence 6999999999999999999 5799999999975 56 5555
No 74
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.96 E-value=0.00025 Score=47.88 Aligned_cols=42 Identities=36% Similarity=0.950 Sum_probs=36.0
Q ss_pred cchhhhhh-hhhhchhccccccccccccchhhhhcc-cCC-CccccCchh
Q 026938 91 ICRQCKIF-ITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSL 137 (230)
Q Consensus 91 ~C~~C~~~-l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~ 137 (230)
.|+.|+.. +.|.-++|..| ..||||..||. |.+ +.|+..|.|
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C-----~d~DLC~~Cf~~g~~~~~H~~~Hp~ 46 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKC-----FNYDLCQSCFFSGRTSKSHKNSHPM 46 (49)
T ss_pred CCCCCCCCCceeeeEECCCC-----CCcCchHHHHhCCCcCCCCCCCCCe
Confidence 58999974 78999999999 68999999998 666 788888874
No 75
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.95 E-value=0.0033 Score=60.93 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=64.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 12 YESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR----NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 12 ~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~----~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
...+|.++...+.+-|..+| |++|+|+..|+..++.+.+... .+.++++....+.|.+|.|+||||+.++.-+++
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 34678899999999999999 9999999999999998874432 567899999999999999999999998765554
No 76
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.87 E-value=0.0035 Score=40.80 Aligned_cols=43 Identities=30% Similarity=0.648 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFM 47 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l 47 (230)
+|++.++..++...+.+. +..+|..+|.+++|.|+++||..++
T Consensus 20 ~e~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 20 DELKAALKSLGEGLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCCCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 578888888887777766 7889999999999999999998765
No 77
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.85 E-value=0.0035 Score=42.93 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+|++.++.+.+. ++++ +..+|+.+|.+++|.|+++||..++...
T Consensus 19 ~el~~~l~~~g~--~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 19 DEARPFLGKSGL--PRSV---LAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHcCC--CHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 578888887753 5554 8899999999999999999999987653
No 78
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.79 E-value=0.0038 Score=51.65 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=32.9
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhcCCc--HHH----HHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 26 FFESMDEDGNGRVSYREFSEFMSLEAYDR--NMC----TRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 26 iF~~~D~dgdG~Is~~EF~~~l~~~g~~~--~~~----l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.|+.+|-|+|+.|.-.++...+..+..+. +++ ..++....|.||||+|++.||..+.
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 45556666666666666666555542110 221 3445666677777777777776544
No 79
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.77 E-value=0.0036 Score=66.70 Aligned_cols=68 Identities=18% Similarity=0.359 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc--------HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR--------NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~--------~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.|++...++.-+|+.||++.+|.+++.+|..+|+.+|++. +..++.++...|++.+|+|+..|++.++
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 5888888999999999999999999999999999998863 2368899999999999999999999855
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.75 E-value=0.0023 Score=57.09 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q 026938 18 EERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR----NMCTRDFFNDLDVDGSRGLDFNEVLTLYYII 85 (230)
Q Consensus 18 eek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~----~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i 85 (230)
...+.+..+|+..|.|.||+|+-.|.++++....-.. -++.+..|+..|.|+||.|+|+||..-+...
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 3456688999999999999999999999765431000 1234567999999999999999998766443
No 81
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.52 E-value=0.0009 Score=44.38 Aligned_cols=41 Identities=27% Similarity=0.812 Sum_probs=34.1
Q ss_pred Ccchhhh-hhhhhhchhccccccccccccchhhhhcccCCCccccCchh
Q 026938 90 PICRQCK-IFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHSL 137 (230)
Q Consensus 90 ~~C~~C~-~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~~ 137 (230)
+.|++|+ ..+.|.-++|..| ..|+||..||..+ .|...|.|
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C-----~dyDLC~~C~~~~--~H~~~H~f 42 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAEC-----PNYDLCTTCYHGD--KHDLEHRF 42 (45)
T ss_pred CCCCCCCCCCcccCeEECCCC-----CCccchHHHhCCC--CCCCCCCE
Confidence 3699999 5778999999999 6799999999975 66666664
No 82
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.52 E-value=0.0071 Score=44.42 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=36.0
Q ss_pred hHHHHHHHH-HcccCC----HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALA-YYESGT----DEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a-~~~~~s----eeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||+.++.+ ++...+ +++ +..+++.+|.+++|.|+++||..++...
T Consensus 30 ~el~~~l~~~~g~~~~~~~~~~e---i~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 30 KELKELLETELPNFLKNQKDPEA---VDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhhhccCCCCHHH---HHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 578888876 444332 444 8899999999999999999999988654
No 83
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.48 E-value=0.0037 Score=34.55 Aligned_cols=25 Identities=28% Similarity=0.838 Sum_probs=14.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHH
Q 026938 24 DQFFESMDEDGNGRVSYREFSEFMS 48 (230)
Q Consensus 24 ~~iF~~~D~dgdG~Is~~EF~~~l~ 48 (230)
..+|+.+|.+++|.|++.||..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4555666666666666666655544
No 84
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.34 E-value=0.011 Score=44.43 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+||++++...+ .++++ +..+|..+|.+++|.|+++||..++...
T Consensus 30 ~el~~~l~~~~--~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 30 AQAKPILLKSG--LPQTL---LAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHcC--CCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 57888887754 45554 8899999999999999999999987654
No 85
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.29 E-value=0.0059 Score=46.44 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
..+..+|+.+|.|+||.|+|+||..++..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 458999999999999999999999988765
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.28 E-value=0.014 Score=39.70 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
+|++..++.+...++++- +..+|+..|++++|.+.-+||..+.+.+
T Consensus 5 ~Evk~lLk~~NI~~~~~y---A~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 5 KEVKKLLKMMNIEMDDEY---ARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHTT----HHH---HHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCHHH---HHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 578888888877776665 8999999999999999999999987754
No 87
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.22 E-value=0.0016 Score=42.75 Aligned_cols=40 Identities=25% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCcchhhhhhhhhhchhccccccccccccchhhhhcccCCCccccCc
Q 026938 89 RPICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTH 135 (230)
Q Consensus 89 r~~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h 135 (230)
...|+.|+..+.|..++|..| ..|++|..||+.. .+...|
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C-----~d~dlC~~Cf~~~--~~~~~h 43 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVC-----PDYDLCQSCFAKG--SAGGEH 43 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCC-----CCccchHHHHhCc--CcCCCC
Confidence 367999999889999999999 6899999999953 554444
No 88
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.09 E-value=0.0089 Score=32.91 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 58 TRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 58 l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56799999999999999999997663
No 89
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.05 E-value=0.00075 Score=44.71 Aligned_cols=40 Identities=28% Similarity=0.727 Sum_probs=29.6
Q ss_pred Ccchhhhh-hhhhhchhccccccccccccchhhhhcccCCCccccCch
Q 026938 90 PICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHS 136 (230)
Q Consensus 90 ~~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~ 136 (230)
..|+.|+. .+.|..++|..| .+|+||..||... .+.+.|.
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C-----~d~dLC~~C~~~g--~~~~~H~ 45 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVC-----PDYDLCEDCFSKG--RHSHNHK 45 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSS-----SS-EEEHHHHHH----H-SSSS
T ss_pred eECcCCCCCcCcCCeEECCCC-----CCCchhhHHHhCc--CCCCCcC
Confidence 57999998 678999999999 6899999999963 6777775
No 90
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.02 E-value=0.0024 Score=42.41 Aligned_cols=39 Identities=28% Similarity=0.842 Sum_probs=33.6
Q ss_pred cchhhhh-hhhhhchhccccccccccccchhhhhcccCCCccccCch
Q 026938 91 ICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHS 136 (230)
Q Consensus 91 ~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~ 136 (230)
.|++|+. -+.|.-++|..| ..|+||..||..+ +|...|.
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C-----~dyDLC~~Cf~~~--~H~~~H~ 41 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNC-----DDFDFCENCFKTR--KHNTRHT 41 (45)
T ss_pred CCCCCCCCCCccCeEECCCC-----CCccchHHhhCCC--CcCCCCc
Confidence 5999986 589999999999 7999999999986 7765665
No 91
>PF14658 EF-hand_9: EF-hand domain
Probab=95.93 E-value=0.023 Score=40.76 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcc-cCCHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHH
Q 026938 2 EDLNEVALAYYE-SGTDEERRLFDQFFESMDEDGN-GRVSYREFSEFMSL 49 (230)
Q Consensus 2 eELr~al~a~~~-~~seeek~~v~~iF~~~D~dgd-G~Is~~EF~~~l~~ 49 (230)
.+|+..+++.+. .+++++ ++.+.+.+|+++. |.|++++|..+|+.
T Consensus 18 ~~l~~~Lra~~~~~p~e~~---Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 18 SDLITYLRAVTGRSPEESE---LQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHcCCCCcHHH---HHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 568888999987 666665 8999999999988 99999999999875
No 92
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.64 E-value=0.0025 Score=58.41 Aligned_cols=60 Identities=23% Similarity=0.530 Sum_probs=49.8
Q ss_pred CCcchhhhhhhhh-hchhccccccccccccchhhhhcc-cCC-CccccCchhhHHhh-hhhhhHHHHHH
Q 026938 89 RPICRQCKIFITN-EYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSLEQFVD-NFALLECLRKE 153 (230)
Q Consensus 89 r~~C~~C~~~l~g-~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~~~f~d-n~~l~~~~~~~ 153 (230)
+..|+.|...+.. ++++|..| -.|++|+-||+ |.+ |+|.--|.|.++-. ||.+++..|-+
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC-----~~~DLC~pCF~~g~~tg~H~pyH~YRiietnsypI~~e~Wga 68 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNEC-----PAVDLCLPCFVNGIETGVHSPYHGYRIIETNSYPIGEEGWGA 68 (432)
T ss_pred eeeehHHHHhhhcceeeeeecc-----cccceehhhhhccccccccCCCCCeeEeeccCccccCCCcCc
Confidence 4679999988754 46899999 89999999999 667 99998999988874 69999876643
No 93
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.36 E-value=0.0059 Score=39.66 Aligned_cols=35 Identities=29% Similarity=0.920 Sum_probs=28.7
Q ss_pred cchhhhhhhhhhchhccccccccccccchhhhhcccCCCcccc
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNH 133 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~ 133 (230)
.|+.|..+ .|..++|..| .+|++|..||... .|+|
T Consensus 2 ~C~~C~~~-~~~r~~C~~C-----~dfDLC~~C~~~~--~H~H 36 (41)
T cd02337 2 TCNECKHH-VETRWHCTVC-----EDYDLCITCYNTK--NHPH 36 (41)
T ss_pred cCCCCCCc-CCCceECCCC-----cchhhHHHHhCCC--CCCc
Confidence 58889884 4688999999 7899999999975 5554
No 94
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.29 E-value=0.0044 Score=41.63 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=33.7
Q ss_pred cchhhhh-hhhhhchhccccccccccccchhhhhcccCCCccccCchh
Q 026938 91 ICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHSL 137 (230)
Q Consensus 91 ~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~~ 137 (230)
.|+.|+. -+.|.-++|..|.+ ..|++|..||.... .|+..|.|
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~---~d~DlC~~C~~~~~-~H~~~H~~ 45 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDD---GDFDLCQDCVVKGE-SHQEDHWL 45 (48)
T ss_pred CCCCCCCCccccceEECCCCCC---CCCccCHHHHhCcC-CCCCCCce
Confidence 4889998 68899999999953 37999999999531 55556764
No 95
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.081 Score=42.24 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh------cCC--c---HHH----HHHHHHhhCCCCCCceeHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE------AYD--R---NMC----TRDFFNDLDVDGSRGLDFNEV 78 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~------g~~--~---~~~----l~~~Fk~~D~d~dG~IdfeEf 78 (230)
.+++++.+ .-.|+..|.|++|.|+=-|+..++... |-. | +.+ +..+++.-|.|+||.|+|-||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 46666643 367999999999999988888877543 221 1 333 344567778999999999999
Q ss_pred HH
Q 026938 79 LT 80 (230)
Q Consensus 79 ~~ 80 (230)
.+
T Consensus 140 lK 141 (144)
T KOG4065|consen 140 LK 141 (144)
T ss_pred Hh
Confidence 75
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.21 E-value=0.037 Score=53.10 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=54.7
Q ss_pred HHHHHcc-cCCHHHHHHHHHHHH----HhCCCCCCcccHHHHHHHHHHhcCC-cHHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 7 VALAYYE-SGTDEERRLFDQFFE----SMDEDGNGRVSYREFSEFMSLEAYD-RNMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 7 al~a~~~-~~seeek~~v~~iF~----~~D~dgdG~Is~~EF~~~l~~~g~~-~~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
.+..|+. .++.- .+++||+ ..-.-.+|++++++|+.++-.+..+ .+..++-+|+.+|.+++|.|+.+|+.-
T Consensus 299 ~L~ry~d~tlt~~---ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~ 375 (493)
T KOG2562|consen 299 DLKRYGDHTLTER---IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRY 375 (493)
T ss_pred HHHHHhccchhhH---HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHH
Confidence 3455543 34433 4899999 3445678999999999987666333 256688899999999999999999976
Q ss_pred HHH
Q 026938 81 LYY 83 (230)
Q Consensus 81 lly 83 (230)
++.
T Consensus 376 fye 378 (493)
T KOG2562|consen 376 FYE 378 (493)
T ss_pred HHH
Confidence 543
No 97
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.20 E-value=0.038 Score=45.83 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhcC-Cc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 24 DQFFESMDEDGNGRVSYREFSEFMSLEAY-DR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 24 ~~iF~~~D~dgdG~Is~~EF~~~l~~~g~-~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
+++-..|-.||+|.+++++|..+++.+.- .| +-.+.-+|+.+|-|+|+.|--+++...+..+.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT 138 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT 138 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh
Confidence 35556677899999999999998877622 21 44567789999999999999999987765543
No 98
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.38 E-value=0.2 Score=48.22 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cCC--------------------------------c-------------
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSLE-AYD--------------------------------R------------- 54 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~~--------------------------------~------------- 54 (230)
..+.+-|+.+|....|+|+......++... +.+ +
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 346788999999999999999887776442 100 0
Q ss_pred --HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 55 --NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 55 --~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
...+..+|+.+|.|++|.|+.+||.+.+-.+.+
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 012566899999999999999999998866554
No 99
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=94.38 E-value=0.091 Score=41.48 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFM 47 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l 47 (230)
..+..+|+.+|.|+||.||++||..++
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 347889999999999999999999988
No 100
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.23 E-value=0.21 Score=48.69 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=43.8
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 28 ESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 28 ~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
...|.-+||.||++||..+=.-+ ..++.....+|..||+.++|.++++++..++.
T Consensus 81 ~iaD~tKDglisf~eF~afe~~l-C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVL-CAPDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhc-cCchHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 34577899999999998764333 33355677899999999999999999998874
No 101
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.12 Score=50.19 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCC
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGR 89 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r 89 (230)
.+++|+++++-.-|+.+-.|-.|+|+=.--..++.+.... -+++..++..-|.|.||-++..||++.+..+-.+|
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklp-i~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRk 298 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLP-IEELSHIWELSDVDRDGALTLSEFCAAFHLVVARK 298 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCc-hHHHHHHHhhcccCccccccHHHHHhhHhheeecc
Confidence 4789999999999999999999999976666666655555 67789999999999999999999999998766544
No 102
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.11 E-value=0.11 Score=48.17 Aligned_cols=59 Identities=7% Similarity=0.098 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHh-cCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLE-AYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
++-.|+.|+.+.||.+.-.+|..+++.. |.. .-.+.-+|+.+++..+|+|++++|..+.
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~-~l~v~~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQVVLGVE-VLRVPVLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhcCcc-eeeccccchhhhcccCcceeHHHHHHHH
Confidence 4444555555555555555554444432 222 2234445555555555555555555443
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.088 Score=53.45 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
.+...+..+..+|+..|+...|+++=..-..+|...+.. ...+-.++..-|.|+||+++.+||+-.++.+.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp-q~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP-QNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc-hhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 355667779999999999999999977666666655666 67788899999999999999999998887654
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.99 E-value=0.036 Score=51.27 Aligned_cols=64 Identities=20% Similarity=0.463 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHH---HHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 20 RRLFDQFFESMDEDGNGRVSYRE---FSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 20 k~~v~~iF~~~D~dgdG~Is~~E---F~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
.+.+.-.|+.+|+|.++.|+..| |..++.+.... ..-.+.+|+..|.|+|..|+++|++..+..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~-rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKP-RKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccH-HHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34577889999999999999887 55555543333 556788999999999999999999987643
No 105
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=93.79 E-value=0.046 Score=49.43 Aligned_cols=40 Identities=28% Similarity=0.685 Sum_probs=33.5
Q ss_pred Ccchhhhh-hhhhhchhccccccccccccchhhhhcccCCCccccCch
Q 026938 90 PICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHS 136 (230)
Q Consensus 90 ~~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~ 136 (230)
..||.|++ -+.|.-|+|..| .+||||-.|+.+. .+.-+|.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C-----~dYDLCe~Ce~~~--~~h~~H~ 193 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVC-----PDYDLCERCEAGN--EHHAAHA 193 (278)
T ss_pred ccCCCccCCccccceeeecCC-----CccchhHHhhcCC--CCCcccc
Confidence 58999999 899999999999 6799999999983 2333555
No 106
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.36 Score=46.26 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=52.3
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----------------cCCc-HHH---------
Q 026938 4 LNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE----------------AYDR-NMC--------- 57 (230)
Q Consensus 4 Lr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~----------------g~~~-~~~--------- 57 (230)
+-+.+.+|....++....++.++-+.++.+ +-.||++||.++..-+ +... ..+
T Consensus 340 FA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vt 418 (489)
T KOG2643|consen 340 FAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVT 418 (489)
T ss_pred HHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 445556665444455555777888888776 6678999987764332 0000 111
Q ss_pred --------HHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 58 --------TRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 58 --------l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
+.-+|..||.|+||.|+.+||+.++.
T Consensus 419 GveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 419 GVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred CcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 12258999999999999999998885
No 107
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=93.39 E-value=0.025 Score=37.19 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=28.3
Q ss_pred Ccchhhhh-hhhhhchhccccccccccccchhhhhccc
Q 026938 90 PICRQCKI-FITNEYFTCTRCFKTRSFPYNICLECFRG 126 (230)
Q Consensus 90 ~~C~~C~~-~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~ 126 (230)
+.|++|+. -+.|.-++|..| ..||||-.||..
T Consensus 1 I~CDgCg~~PI~G~RykC~~C-----~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVK-----EDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCC-----CCCccHHHHhhh
Confidence 36999997 478999999999 899999999983
No 108
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.38 E-value=0.26 Score=35.76 Aligned_cols=59 Identities=12% Similarity=0.302 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCC---cHHHHHHHHHhhCCC----CCCceeHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYD---RNMCTRDFFNDLDVD----GSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~---~~~~l~~~Fk~~D~d----~dG~IdfeEf~~ll 82 (230)
+..+|..+-. +.+.|+.++|..+|...... ....+..++..+..+ ..+.+++++|..++
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 6789999955 78899999999999766322 166788888888655 47999999999765
No 109
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.36 E-value=0.23 Score=53.83 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcccCCHHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcC---CcHHHHHHHHHhhCCCCCCcee
Q 026938 2 EDLNEVALAYYESGTDEER----RLFDQFFESMDEDGNGRVSYREFSEFMSLEAY---DRNMCTRDFFNDLDVDGSRGLD 74 (230)
Q Consensus 2 eELr~al~a~~~~~seeek----~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~---~~~~~l~~~Fk~~D~d~dG~Id 74 (230)
++++-|++++|.++|.-+. -.+.++...+|++.+|+|+..||.++|-.... .....+..+|+.+|. +.-+|+
T Consensus 2273 q~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvt 2351 (2399)
T KOG0040|consen 2273 QHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVT 2351 (2399)
T ss_pred HHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCcccc
Confidence 4688899999877643221 24789999999999999999999998855422 114579999999999 778899
Q ss_pred HHHHHH
Q 026938 75 FNEVLT 80 (230)
Q Consensus 75 feEf~~ 80 (230)
.+++..
T Consensus 2352 ke~~~~ 2357 (2399)
T KOG0040|consen 2352 KEELYQ 2357 (2399)
T ss_pred HHHHHh
Confidence 988843
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.96 E-value=0.1 Score=48.56 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
+.+.=|..+--||+.+|.|.||.++..|+..+-. ... +.-++.+|+..|...||.|+-+|+...+
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l--dkn-E~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL--DKN-EACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhc--cCc-hhHHHHHHhhhcccccCccccchhhhhh
Confidence 4444566789999999999999999999876532 233 6678999999999999999999998655
No 111
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=91.72 E-value=0.059 Score=35.70 Aligned_cols=39 Identities=18% Similarity=0.462 Sum_probs=32.0
Q ss_pred cchhhhhhhhhhchhccccccccccccchhhhhcccCCCccccCch
Q 026938 91 ICRQCKIFITNEYFTCTRCFKTRSFPYNICLECFRGEEGHFNHTHS 136 (230)
Q Consensus 91 ~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~~~~~~~h~ 136 (230)
.|..|+..+..+.++|.++ ..++||..||... +++.+|.
T Consensus 2 ~C~~Cg~D~t~vryh~~~~-----~~~dLC~~CF~~G--~f~~~~~ 40 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKA-----KKYDLCPSCYQEG--RFPSNFQ 40 (45)
T ss_pred cccCCCCccCceEEEecCC-----CccccChHHHhCc--CCCCCCc
Confidence 5888999988888999887 5799999999964 6766554
No 112
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=91.56 E-value=0.34 Score=45.01 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc--HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR--NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~--~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
..+..+|..||.+++|.+++.|....+.-+-.++ ..-++-.|+.|+.+.||.+.-++|-.++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 4478999999999999999999988776652221 5668889999999999999998887665
No 113
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=90.50 E-value=0.092 Score=48.72 Aligned_cols=54 Identities=22% Similarity=0.631 Sum_probs=41.2
Q ss_pred CCcchhhhhh-hhhhchhccccccccccccchhhhhcccCC--CccccCchhhHHh--hhhhhh
Q 026938 89 RPICRQCKIF-ITNEYFTCTRCFKTRSFPYNICLECFRGEE--GHFNHTHSLEQFV--DNFALL 147 (230)
Q Consensus 89 r~~C~~C~~~-l~g~~~~c~~Cf~~~~~~~~~c~~cf~~~~--~~~~~~h~~~~f~--dn~~l~ 147 (230)
+..|++|++- +.+--++|-.| .+||||-+||..+. +.|+++|.+--.+ .+|+|.
T Consensus 8 ~v~CdgC~k~~~t~rrYkCL~C-----~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~ 66 (381)
T KOG1280|consen 8 GVSCDGCGKTAFTFRRYKCLRC-----SDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELY 66 (381)
T ss_pred CceeccccccceeeeeeEeeee-----cchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeE
Confidence 4789999874 45555889999 99999999999666 8899888854443 366664
No 114
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=89.26 E-value=0.71 Score=40.26 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 2 EDLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 2 eELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
.||+..+.++|.+.|.-- +..+++.+|.|.||+|||.||.-+.+..
T Consensus 119 ~ELK~mmEKLgapQTHL~---lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 119 MELKRMMEKLGAPQTHLG---LKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhCCchhhHH---HHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 478889999987655444 7889999999999999999999887665
No 115
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=89.22 E-value=0.62 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSL 49 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~ 49 (230)
.++.+. +..|+...|.|+||.++++||..+|..
T Consensus 39 ~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 39 GLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 466666 889999999999999999999987754
No 116
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=88.50 E-value=0.5 Score=48.05 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=31.5
Q ss_pred cchhhhhh-hhhhchhccccccccccccchhhhhcc-cCC-CccccCchh
Q 026938 91 ICRQCKIF-ITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSL 137 (230)
Q Consensus 91 ~C~~C~~~-l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~ 137 (230)
.|..|... +.|.-+.|-.| ..+++|..||- |.. +.|+-.|.|
T Consensus 605 kCniCk~~pIvG~RyR~l~~-----fn~dlCq~CF~sgraak~hk~~~pM 649 (966)
T KOG4286|consen 605 KCNICKECPIIGFRYRSLKH-----FNYDICQSCFFSGRAAKGHKMHYPM 649 (966)
T ss_pred hcchhhhCccceeeeeehhh-----cChhHHhhHhhhcccccCCCCCCCc
Confidence 68888876 57887888888 46899999997 655 566655653
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=0.31 Score=50.41 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
..++.++..+.++|..+|.+.+|.|+..++...+...|.. ...+..++...|.++.|.|+++||...++++..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~-~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLS-KPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCCC-hhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 4567777788899999999999999999998887777776 677888999999999999999999998887655
No 118
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=86.21 E-value=1.7 Score=39.14 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 20 RRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 20 k~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
++..+++=..+|.|.||.++++|+..++....... ......+...-|.+++.+++.+|+..--
T Consensus 280 kdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~ 343 (362)
T KOG4251|consen 280 KDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERD 343 (362)
T ss_pred HHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHH
Confidence 34455555678999999999999999876553321 3446667788899999999999998654
No 119
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=83.90 E-value=1.2 Score=44.74 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc----------HHHHHHHHHhhCCCCC--------------
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR----------NMCTRDFFNDLDVDGS-------------- 70 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~----------~~~l~~~Fk~~D~d~d-------------- 70 (230)
..+.+.-...+++..+|.+.|+.+++.+|.+....++... ......+|+.+|.+++
T Consensus 431 ~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~v 510 (975)
T KOG2419|consen 431 PVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYV 510 (975)
T ss_pred cccchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhc
Confidence 3444445567888999999999999999988776653321 1124568999999999
Q ss_pred ---------CceeHHHHHHHHH
Q 026938 71 ---------RGLDFNEVLTLYY 83 (230)
Q Consensus 71 ---------G~IdfeEf~~lly 83 (230)
|.++.+|.+.++.
T Consensus 511 S~~~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 511 SYPFLKKSFGVVTVDELVALLA 532 (975)
T ss_pred cccccccccCeeEHHHHHHHHH
Confidence 9999999998865
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=83.31 E-value=1.4 Score=44.20 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC-cHHHHHHHHHhhCCCCCCceeHHHH
Q 026938 19 ERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYD-RNMCTRDFFNDLDVDGSRGLDFNEV 78 (230)
Q Consensus 19 ek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~-~~~~l~~~Fk~~D~d~dG~IdfeEf 78 (230)
....+..+|...|.+++|.|++.+++..+..+-.. ..+.++-+|+.+|.+++ ..+.+|.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33457899999999999999999999988877332 15668889999999999 9999988
No 121
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=82.44 E-value=4 Score=40.67 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCC-cHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCC
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYD-RNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGR 89 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~-~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r 89 (230)
.+++++-.....-|..+|.|+.|.++.++....|+..+.+ ++..+.+.....|.+-+|.+..+||.+++..++.+.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 4677887788889999999999999999999999887522 166788899999999999999999999988777643
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=82.17 E-value=7.2 Score=33.07 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcC--Cc------HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLEAY--DR------NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~--~~------~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
..+++|+.++..+.+.+++.|+..+++.... ++ ..++.-++..+ +|.||.+..|+++.++
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 3789999999999999999999999876422 21 12233344443 7789999999998764
No 123
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=79.20 E-value=3.1 Score=38.94 Aligned_cols=46 Identities=24% Similarity=0.813 Sum_probs=32.8
Q ss_pred cchhhhhh-hhhhchhccccccccccccchhhhhcc-cCC-CccccCchhhHHh
Q 026938 91 ICRQCKIF-ITNEYFTCTRCFKTRSFPYNICLECFR-GEE-GHFNHTHSLEQFV 141 (230)
Q Consensus 91 ~C~~C~~~-l~g~~~~c~~Cf~~~~~~~~~c~~cf~-~~~-~~~~~~h~~~~f~ 141 (230)
.|+.|..- +.|..++|.+| .+|-+|-.||= |.. |.|.++|.|....
T Consensus 242 ~cs~c~srs~~gfry~cq~C-----~nyqlcq~cfwrG~~g~~hsnqh~mke~S 290 (434)
T KOG4301|consen 242 ECSYCRSRSMMGFRYRCQQC-----HNYQLCQQCFWRGHAGGSHSNQHQMKEYS 290 (434)
T ss_pred cCcceecccccchhhhHhhc-----CCccccchhhccccCCCCcchHHHHHHhh
Confidence 46666543 45666788888 89999999998 433 6788888755543
No 124
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=78.04 E-value=2.6 Score=39.06 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=42.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHh---cCCc---HHH-----------HHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 25 QFFESMDEDGNGRVSYREFSEFMSLE---AYDR---NMC-----------TRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 25 ~iF~~~D~dgdG~Is~~EF~~~l~~~---g~~~---~~~-----------l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.+|...|.|+||.++-.|+.+++..- -+++ +.+ -..+.+..|.|.|.-|+.+||++-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 57888899999999999988876432 1221 111 1236889999999999999998644
No 125
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=76.74 E-value=7.2 Score=39.82 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc-HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 18 EERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDR-NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 18 eek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
....-+..+|...|++.+|.+++.+-..++..+.... ...+..+|+..|..+++.+..+++..+...+.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 3445678999999999999999999999888774432 55678899999989999999999998765443
No 126
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=76.64 E-value=4.2 Score=38.57 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 55 NMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 55 ~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
...++.+|+.+|.|+||.|+++||.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4457889999999999999999996
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=76.63 E-value=8.1 Score=32.76 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 55 NMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 55 ~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
++..+++|..+++.+.+.+++.|+..++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 346788999999999999999999887743
No 128
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=74.57 E-value=12 Score=38.98 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=58.1
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcH--H----HHHHHHHhhCCCCCCceeHHHHHH
Q 026938 7 VALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRN--M----CTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 7 al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~--~----~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
++..-....++.+..+++..|+.+|....|.++.++|..++-.+|++.+ + ++..+...-|.+.-|++++.||..
T Consensus 733 il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~d 812 (890)
T KOG0035|consen 733 ILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFED 812 (890)
T ss_pred HHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHh
Confidence 4444455667788889999999999999999999999999988877642 1 233344455666679999999987
Q ss_pred HH
Q 026938 81 LY 82 (230)
Q Consensus 81 ll 82 (230)
.+
T Consensus 813 dl 814 (890)
T KOG0035|consen 813 DL 814 (890)
T ss_pred Hh
Confidence 66
No 129
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.75 E-value=4 Score=32.73 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 026938 19 ERRLFDQFFESMDEDGNGRVSYREFSEF 46 (230)
Q Consensus 19 ek~~v~~iF~~~D~dgdG~Is~~EF~~~ 46 (230)
....+..+.+.-|.|+||.|++-||...
T Consensus 115 le~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 115 LERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3456777777789999999999999753
No 130
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=70.32 E-value=29 Score=34.38 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHH---HhCCCCCCcccHHHHHHHH-HHhcCCc--HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 23 FDQFFE---SMDEDGNGRVSYREFSEFM-SLEAYDR--NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~---~~D~dgdG~Is~~EF~~~l-~~~g~~~--~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
++.+|- ..|.++.-.++-++|+..- ..++... ++..+-+=...|.-+||-|||+||+.+-
T Consensus 35 Lr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe 100 (694)
T KOG0751|consen 35 LRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFE 100 (694)
T ss_pred HHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHH
Confidence 555554 4578888899999998743 3332211 3333333445578899999999998754
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=70.30 E-value=7 Score=42.97 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=45.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 25 QFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 25 ~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
+-|+.+|+||.|.|+..||...|.....-...++..+..-...|.+..++|+||+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 3467789999999999999998865422214456667778888999999999998754
No 132
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=70.18 E-value=2.7 Score=39.40 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh--cCCc--HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLE--AYDR--NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~--g~~~--~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.+.+.|+.+-.++.+...-......-+.+ .+.+ ...+.+||..+|.|.||.++..|+..+.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 46788888877766665544333322222 1111 4679999999999999999999997654
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=69.15 E-value=16 Score=36.62 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH
Q 026938 57 CTRDFFNDLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 57 ~l~~~Fk~~D~d~dG~IdfeEf~~lly 83 (230)
.+..+|..+|.|+||.++-+|+..++.
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 366789999999999999999988874
No 134
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=68.80 E-value=15 Score=35.64 Aligned_cols=58 Identities=12% Similarity=0.282 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH----HHh---cCCc---HHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFM----SLE---AYDR---NMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l----~~~---g~~~---~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
++=+|+.+|.+++|.|+..|+.-+. ..+ +..+ +.-+-+++.+.-....|+|+.++|+.
T Consensus 353 leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 353 LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 6778999999999999999875543 222 2221 33356678888778889999999984
No 135
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=66.51 E-value=6.4 Score=30.71 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSE 45 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~ 45 (230)
-+..+|+..|.|+||.||+.|...
T Consensus 89 C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 367899999999999999999864
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=23 Score=36.74 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
.+++++......|..+ +-+.|+|+=+.-..++-..+.+ ..-+-.++..-|.|+||.+|..||--.+-.++
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP-~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLP-TPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCC-hHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 5677766667777766 4578999988777766655676 66678899999999999999999987775544
No 137
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=60.93 E-value=4 Score=40.82 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=24.8
Q ss_pred Ccchhhhhhhhhhchhccccccccccccchhh
Q 026938 90 PICRQCKIFITNEYFTCTRCFKTRSFPYNICL 121 (230)
Q Consensus 90 ~~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~ 121 (230)
.|||+|++.|||....-.+|+.++.+.+.-|.
T Consensus 157 tFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa 188 (888)
T KOG4236|consen 157 TFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCA 188 (888)
T ss_pred hHHHHHHHHHHHHHHccccccCCCCcHhhhhh
Confidence 69999999999999766666666666666654
No 138
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.57 E-value=38 Score=26.25 Aligned_cols=61 Identities=13% Similarity=0.322 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCC---CCCceeHHHHHHHHHHhh
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVD---GSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d---~dG~IdfeEf~~lly~i~ 86 (230)
.|+.=|..+-. ||.++...|-.++... .. .+...++|..+-+- ..+.|+.+|+..++..|.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM~-dS-keFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGMK-DS-KEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT---S--HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCCc-cc-HHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 35666666655 8999999999998753 22 56677788877422 257899999998876543
No 139
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=55.25 E-value=24 Score=34.97 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 026938 3 DLNEVALAYYESGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMS 48 (230)
Q Consensus 3 ELr~al~a~~~~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~ 48 (230)
+|..++........--...+++.+....+.|.+|.|+++||..++-
T Consensus 39 ~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 39 ELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4555555554433333345588999999999999999999998653
No 140
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=54.34 E-value=85 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhcCCc----HHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 26 FFESMDEDGNGRVSYREFSEFMSLEAYDR----NMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 26 iF~~~D~dgdG~Is~~EF~~~l~~~g~~~----~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
.|..+-..+...++-..|..+++.-++-. ..++.-+|...-..+...|+|++|..++..+-
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 33334455566789999999998774421 45677789998766777899999999886543
No 141
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=51.31 E-value=20 Score=19.87 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=9.3
Q ss_pred CCCCCCcccHHHHHH
Q 026938 31 DEDGNGRVSYREFSE 45 (230)
Q Consensus 31 D~dgdG~Is~~EF~~ 45 (230)
|.|+||.|+--++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 567777777666643
No 142
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=50.84 E-value=22 Score=35.62 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHH-hhCCCCCCceeHHHHHHHHH
Q 026938 15 GTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFN-DLDVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 15 ~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk-~~D~d~dG~IdfeEf~~lly 83 (230)
++++--+.+..+|..+|.|+||-++-+|+..+.+..+..++- ...+. .--.+..|.++++-|...+.
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~--~~~~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWT--SSPYKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCC--CCcccccceecccceeehhhHHHHHH
Confidence 556666788999999999999999999999998877443200 00010 11123678888888877654
No 143
>PLN02952 phosphoinositide phospholipase C
Probab=49.96 E-value=38 Score=34.05 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=36.5
Q ss_pred CCCcccHHHHHHHHHHhcCC---cHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhh
Q 026938 34 GNGRVSYREFSEFMSLEAYD---RNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIK 86 (230)
Q Consensus 34 gdG~Is~~EF~~~l~~~g~~---~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~ 86 (230)
+.|.++|+||..+.+.+... +..++..+|..+-.++ +.++.++|...+...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 35789999998777665321 2567888888885443 6789999888775444
No 144
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=47.49 E-value=59 Score=34.17 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=52.6
Q ss_pred hHHHHHHHHHcccCCHH--HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-cC-CcHHHHHHHHHhhCCCCCCceeHHH
Q 026938 2 EDLNEVALAYYESGTDE--ERRLFDQFFESMDEDGNGRVSYREFSEFMSLE-AY-DRNMCTRDFFNDLDVDGSRGLDFNE 77 (230)
Q Consensus 2 eELr~al~a~~~~~see--ek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-g~-~~~~~l~~~Fk~~D~d~dG~IdfeE 77 (230)
+++..++..+|.+.-++ -.+.+..+.+..|.+..|.+++.+|...|.+. .. +....+...|+.+-++.. +|..+|
T Consensus 767 e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eE 845 (890)
T KOG0035|consen 767 EELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEE 845 (890)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHH
Confidence 57888888888765442 22334444445677778999999999988654 11 114456667887766655 788888
Q ss_pred HHH
Q 026938 78 VLT 80 (230)
Q Consensus 78 f~~ 80 (230)
++.
T Consensus 846 L~~ 848 (890)
T KOG0035|consen 846 LVR 848 (890)
T ss_pred HHh
Confidence 876
No 145
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=47.47 E-value=26 Score=35.38 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHcc--cCCHHHHHHHHHHHHHh-CCCCC----Cc---------ccHHHHHHHHHHhcC-Cc-HHHHHHHHHhhC
Q 026938 5 NEVALAYYE--SGTDEERRLFDQFFESM-DEDGN----GR---------VSYREFSEFMSLEAY-DR-NMCTRDFFNDLD 66 (230)
Q Consensus 5 r~al~a~~~--~~seeek~~v~~iF~~~-D~dgd----G~---------Is~~EF~~~l~~~g~-~~-~~~l~~~Fk~~D 66 (230)
|..+++++. .++.++...+.++|..- -.+.- -. |++..|..++..+-. .. ...+..+|..+|
T Consensus 486 rt~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D 565 (671)
T KOG4347|consen 486 RTILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLD 565 (671)
T ss_pred HHHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcc
Confidence 345666654 46778877777777752 11111 12 223333333332200 00 234788999999
Q ss_pred CCCCCceeHHHHHHHHHHhhc
Q 026938 67 VDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 67 ~d~dG~IdfeEf~~lly~i~s 87 (230)
.+++|.|+|.+++.-+.+++.
T Consensus 566 ~s~~g~Ltf~~lv~gL~~l~~ 586 (671)
T KOG4347|consen 566 DSMTGLLTFKDLVSGLSILKA 586 (671)
T ss_pred cCCcceeEHHHHHHHHHHHHh
Confidence 999999999999988876665
No 146
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=45.61 E-value=71 Score=23.66 Aligned_cols=45 Identities=24% Similarity=0.232 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHcc-cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 026938 1 MEDLNEVALAYYE-SGTDEERRLFDQFFESMDEDGNGRVSYREFSEF 46 (230)
Q Consensus 1 meELr~al~a~~~-~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~ 46 (230)
|++|+..+...-+ -.+++-...=.-+.+.++.+ +|.|+++.+..+
T Consensus 1 ~~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F 46 (82)
T cd08028 1 MDDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKF 46 (82)
T ss_pred ChHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCC
Confidence 6777776544321 24444332223444567766 999999877665
No 147
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=44.72 E-value=8.6 Score=33.63 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=37.0
Q ss_pred HhCC-CCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 29 SMDE-DGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 29 ~~D~-dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.+|. --||++|-.|+.-+-..+ .+.+.-...+|.-.|.|+||+|+.+|+...+
T Consensus 195 qld~~p~d~~~sh~el~pl~ap~-ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 195 QLDQHPIDGYLSHTELAPLRAPL-IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccCCCccccccccccccccCCc-ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3443 358888888875543322 2214457789999999999999999997544
No 148
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.09 E-value=37 Score=33.60 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=31.5
Q ss_pred HHHHHHcc--cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 026938 6 EVALAYYE--SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSL 49 (230)
Q Consensus 6 ~al~a~~~--~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~ 49 (230)
.+++.++. .++-++ +.-|.+..|.|.||-+++.||.+++..
T Consensus 251 saAknFFtKSklpi~E---LshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 251 SAAKNFFTKSKLPIEE---LSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhhccCchHH---HHHHHhhcccCccccccHHHHHhhHhh
Confidence 35666653 344455 788899999999999999999998744
No 149
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=39.71 E-value=1.2e+02 Score=31.33 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYI 84 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~ 84 (230)
.+..+|+..|..++|++...+|..+....... . ++..+|..+-.+ .+.++.++++.++..
T Consensus 173 ~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-p-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 173 KARRLFKESDNSQTGKLEEEEFVKFRKELTKR-P-EVYFLFVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHHHHHHHhhccceehHHHHHHHHHhhccC-c-hHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 47788888899999999999999988777665 3 566777776544 777777777776643
No 150
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=39.15 E-value=1.1e+02 Score=19.92 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHH
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFN 63 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk 63 (230)
.+++++...+..+|.. +..++.++...+...++.+ ...+...|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~-~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT-ERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hcccccccccccccccccc-ccccccCHH
Confidence 4678888888888885 6688999988888888888 777777775
No 151
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=37.37 E-value=77 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCC-------CCceeHHHHHHHH
Q 026938 35 NGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDG-------SRGLDFNEVLTLY 82 (230)
Q Consensus 35 dG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~-------dG~IdfeEf~~ll 82 (230)
-+.|+-.||.++-+-..+. ...++.+++.|..+| ++.|+|+.|+..+
T Consensus 5 ~~~lsp~eF~qLq~y~eys-~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYS-TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 3567888887765444343 445666776664433 4689999999766
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=34.79 E-value=1.4e+02 Score=30.10 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCC---cHHHHHHHHHhhCC-CCCCceeHHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYD---RNMCTRDFFNDLDV-DGSRGLDFNEVLTLYY 83 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~---~~~~l~~~Fk~~D~-d~dG~IdfeEf~~lly 83 (230)
+..+|..+-. ++.++.++|..+|...... ..+..+.+|..+.. ...+.++++.|..++.
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 7888988853 4799999999999776332 14556677776532 2456799999998663
No 153
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=34.64 E-value=2e+02 Score=21.67 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh-------------cCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 22 LFDQFFESMDEDGNGRVSYREFSEFMSLE-------------AYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 22 ~v~~iF~~~D~dgdG~Is~~EF~~~l~~~-------------g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.++-+|+.+ .|.+|.++..-|..++... |.. +..++..|..- ..+-.|+-++|+..+
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~-e~sv~sCF~~~--~~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYI-EPSVRSCFQQV--QLSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT---HHHHHHHHHHT--TT-S-B-HHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCc-HHHHHHHhccc--CCCCccCHHHHHHHH
Confidence 367889988 7889999999888777543 222 55677788775 355679999998644
No 154
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=33.62 E-value=1.1e+02 Score=25.15 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----cCCc---HHH-HHHHHHhhCCCCCCceeHHHHHHHHHH-
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLE----AYDR---NMC-TRDFFNDLDVDGSRGLDFNEVLTLYYI- 84 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~----g~~~---~~~-l~~~Fk~~D~d~dG~IdfeEf~~lly~- 84 (230)
.+|.++.+.+...++. ++++|...+... .... ++. +..+...-|+. +|.+.|+..=+.-
T Consensus 32 elT~eEl~lv~~ylkR---------Dl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkT---qvEw~el~~d~~h~ 99 (146)
T PF07295_consen 32 ELTREELALVSAYLKR---------DLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKT---QVEWAELAQDLEHH 99 (146)
T ss_pred hcCHHHHHHHHHHHHH---------HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchh---HHHHHHHHHHHHhc
Confidence 4677776666666665 555665555441 1110 122 22233333433 5666666654421
Q ss_pred --hhc------CCCcchhhhhhh----hhhchhccccc
Q 026938 85 --IKS------GRPICRQCKIFI----TNEYFTCTRCF 110 (230)
Q Consensus 85 --i~s------~r~~C~~C~~~l----~g~~~~c~~Cf 110 (230)
.++ |+..|..|+.-+ .+.+-.|.+|.
T Consensus 100 g~Y~sGE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~ 137 (146)
T PF07295_consen 100 GVYHSGEVVGPGTLVCENCGHEVELTHPERLPPCPKCG 137 (146)
T ss_pred CCeecCcEecCceEecccCCCEEEecCCCcCCCCCCCC
Confidence 111 346777777654 34455677774
No 155
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.20 E-value=1.3e+02 Score=19.25 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHh
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFND 64 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~ 64 (230)
..+++....++.+|.. +.+.+..+...+...++.. ...+...|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~-~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLT-ERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcC-HHHHHHHHHH
Confidence 4567777888888887 5588889998888888887 6677777753
No 156
>PLN02228 Phosphoinositide phospholipase C
Probab=33.14 E-value=1.6e+02 Score=29.53 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCC---cHHHHHHHHHhhCCC----CCCceeHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYD---RNMCTRDFFNDLDVD----GSRGLDFNEVLTLY 82 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~---~~~~l~~~Fk~~D~d----~dG~IdfeEf~~ll 82 (230)
+..+|..+-. ++.++.++|..+|...... ..+.+..+|..+... ..|.++.+.|..++
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 7888888754 3589999999999776322 145577788877543 34679999998866
No 157
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=33.09 E-value=2.4e+02 Score=22.38 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHHHHh--------cCCc-----------HHHHHHHHHhhCCCCCCceeHHHHHH
Q 026938 22 LFDQFFESMDEDG--NGRVSYREFSEFMSLE--------AYDR-----------NMCTRDFFNDLDVDGSRGLDFNEVLT 80 (230)
Q Consensus 22 ~v~~iF~~~D~dg--dG~Is~~EF~~~l~~~--------g~~~-----------~~~l~~~Fk~~D~d~dG~IdfeEf~~ 80 (230)
.+.++|.....+. |..|+..|...++..+ +... +--+.+++..+|.+++|.|+.-+|+.
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 3678888766543 5779999998877554 1110 11367789999999999999999987
Q ss_pred HHH
Q 026938 81 LYY 83 (230)
Q Consensus 81 lly 83 (230)
.+.
T Consensus 122 aL~ 124 (127)
T PF09068_consen 122 ALI 124 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 158
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=30.95 E-value=54 Score=30.96 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=37.8
Q ss_pred chhhhhcccCCCccccCchhhHHhhhhhhhHHHHHHHHHhcccCCCCCCCCcccccccccccccC
Q 026938 118 NICLECFRGEEGHFNHTHSLEQFVDNFALLECLRKEALEENREDGYYEPSPSRSRSQRIVPYSRY 182 (230)
Q Consensus 118 ~~c~~cf~~~~~~~~~~h~~~~f~dn~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (230)
+.||..|.. ..-+++.+++.++++|..+++..-..|+.-. --.|+.+|+-+..++++...
T Consensus 61 P~C~~~~~E--s~Lr~n~il~Eiv~S~~~~R~~Ll~fl~~~~---~p~P~~~~~p~~~ve~~~~~ 120 (442)
T KOG0287|consen 61 PTCCVTVTE--SDLRNNRILDEIVKSLNFARNHLLQFLLESP---APSPASSSSPNLAVEVYTPV 120 (442)
T ss_pred Cceecccch--hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC---CCCcccccCCccceeeeccc
Confidence 345555554 3677788888999999988776666554322 22255557777777655443
No 159
>PRK11032 hypothetical protein; Provisional
Probab=30.54 E-value=1.6e+02 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=13.1
Q ss_pred CCCcchhhhhhh----hhhchhccccc
Q 026938 88 GRPICRQCKIFI----TNEYFTCTRCF 110 (230)
Q Consensus 88 ~r~~C~~C~~~l----~g~~~~c~~Cf 110 (230)
|...|..|+.-+ .+.+--|.+|.
T Consensus 123 G~LvC~~Cg~~~~~~~p~~i~pCp~C~ 149 (160)
T PRK11032 123 GNLVCEKCHHHLAFYTPEVLPLCPKCG 149 (160)
T ss_pred ceEEecCCCCEEEecCCCcCCCCCCCC
Confidence 345677776644 34455566663
No 160
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=29.96 E-value=59 Score=30.63 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 026938 19 ERRLFDQFFESMDEDGNGRVSYREFSEFMSLE 50 (230)
Q Consensus 19 ek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~ 50 (230)
.++-.+.+|+-.|.|+|..||+.|....|...
T Consensus 368 ~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 368 PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 45667899999999999999999999887543
No 161
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=28.69 E-value=76 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 55 NMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 55 ~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
.+++...|+.+ .++.++|+-+|+...+
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 46688899999 7888999999998754
No 162
>PRK13844 recombination protein RecR; Provisional
Probab=27.91 E-value=1.1e+02 Score=26.59 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHh-cCCcHHH-HHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcchhhhhhhhhhchhccccccccccc
Q 026938 39 SYREFSEFMSLE-AYDRNMC-TRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPICRQCKIFITNEYFTCTRCFKTRSFP 116 (230)
Q Consensus 39 s~~EF~~~l~~~-g~~~~~~-l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C~~C~~~l~g~~~~c~~Cf~~~~~~ 116 (230)
.+++++..++++ |.. ... -+-+|..++.+.+. .++|...+..++..-..|..|+.+..+. -|.-|-+..-+.
T Consensus 9 ~~~~LI~~l~~LPGIG-~KsA~Rla~~lL~~~~~~---~~~la~~i~~~~~~i~~C~~C~~lte~~--~C~IC~d~~Rd~ 82 (200)
T PRK13844 9 KISAVIESLRKLPTIG-KKSSQRLALYLLDKSPET---AIAIANSLLDATANIKKCVYCQALTEDD--VCNICSNTNRDD 82 (200)
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHhCCcCCCCCCCCCCC--CCCCCCCCCCCC
Confidence 466777777777 555 433 34467777655322 3344444444444346888998887655 388887665444
Q ss_pred cchhhhh
Q 026938 117 YNICLEC 123 (230)
Q Consensus 117 ~~~c~~c 123 (230)
--+|.++
T Consensus 83 ~~iCVVE 89 (200)
T PRK13844 83 TKLCIIE 89 (200)
T ss_pred CEEEEEC
Confidence 4455443
No 163
>PLN02952 phosphoinositide phospholipase C
Probab=27.86 E-value=4.2e+02 Score=26.79 Aligned_cols=60 Identities=10% Similarity=0.264 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhcCCc---HHHHHHHHHhh-------CCCCCCceeHHHHHHHHH
Q 026938 23 FDQFFESMDEDGNGRVSYREFSEFMSLEAYDR---NMCTRDFFNDL-------DVDGSRGLDFNEVLTLYY 83 (230)
Q Consensus 23 v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~---~~~l~~~Fk~~-------D~d~dG~IdfeEf~~lly 83 (230)
+..+|..+-.+ .+.++.++|..+|....... .+....++..+ ...+.+.++++.|..++.
T Consensus 40 i~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 40 VKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 78999988544 46899999999997763211 34455555433 122345689999987663
No 164
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=27.72 E-value=62 Score=25.50 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHH---hCCCCCCcccHHHHHHHHHHhcCC
Q 026938 5 NEVALAYYESGTDEERRLFDQFFES---MDEDGNGRVSYREFSEFMSLEAYD 53 (230)
Q Consensus 5 r~al~a~~~~~seeek~~v~~iF~~---~D~dgdG~Is~~EF~~~l~~~g~~ 53 (230)
.++++.+|...|+.+ +.+.++. +-. +|..+-+.|..++...|.+
T Consensus 90 ~q~A~~~gi~vsd~e---v~~~i~~~~~f~~--~g~~~~~~f~~~L~~~g~t 136 (154)
T PF13624_consen 90 LQEAKKLGISVSDAE---VDDAIKQIPAFQE--NGKFDKEAFEEFLKQQGMT 136 (154)
T ss_dssp HHHHHHTT----HHH---HHHHHHH--HHHH--H----HHHHHHHHH-----
T ss_pred HHHHHHcCCCCCHHH---HHHHHHHHHHHHH--CCCCCHHHHHHHHHHhhcc
Confidence 345666666666655 3333333 211 3666777777777666655
No 165
>COG5462 Predicted secreted (periplasmic) protein [Function unknown]
Probab=27.00 E-value=43 Score=27.18 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=35.2
Q ss_pred hhhhhhHHHHHHHHHhcccCCCCCCCCcccccccc---cccccCCCCCCCCC-------CCCCCCCCchHHhhhhHHHH
Q 026938 142 DNFALLECLRKEALEENREDGYYEPSPSRSRSQRI---VPYSRYPSENSSHH-------AIVPYNPNIPAERRNRWGTA 210 (230)
Q Consensus 142 dn~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~~~~~~~ 210 (230)
||.+||..+|....+-+|. |.+--.| ..+|+.+.-+-..- +=.||||++--+.-+-|..+
T Consensus 46 dtIdlLkAdwAlLtqP~RL---------ekLa~aY~t~L~Lepv~s~Qlv~~~~~P~l~~~lp~~~~~~i~k~~~~r~~ 115 (138)
T COG5462 46 DTIDLLKADWALLTQPNRL---------EKLAAAYKTELKLEPVKSTQLVGPPELPMLRSDLPFNPNIDIQKILDGRAK 115 (138)
T ss_pred chHHHHHHhHHHHcCchHH---------HHHHHHHHHHhccCccCHHHhcCCccccchhhhCCCCCChhHHHHHHHHHH
Confidence 6899999999988754443 3333333 12222222222221 45789999887766777654
No 166
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=26.88 E-value=1.4e+02 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSL 49 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~ 49 (230)
-.+..+.+.||.+++|.|+.-.|+..+..
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 34567888999999999999999887643
No 167
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.37 E-value=32 Score=33.72 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=18.8
Q ss_pred CCcchhhhhhhhhhchhccccccccc
Q 026938 89 RPICRQCKIFITNEYFTCTRCFKTRS 114 (230)
Q Consensus 89 r~~C~~C~~~l~g~~~~c~~Cf~~~~ 114 (230)
-++|++|+.+|-|.+..-.+|-.++.
T Consensus 121 PTFCDhCGsLLyGl~HQGmKC~~C~m 146 (683)
T KOG0696|consen 121 PTFCDHCGSLLYGLIHQGMKCDTCDM 146 (683)
T ss_pred CchhhhHHHHHHHHHhcccccccccc
Confidence 37999999999999965444443343
No 168
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.12 E-value=1e+02 Score=26.60 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHh-cCCcHHHH-HHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcchhhhhhhhhhchhccccccccccc
Q 026938 39 SYREFSEFMSLE-AYDRNMCT-RDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPICRQCKIFITNEYFTCTRCFKTRSFP 116 (230)
Q Consensus 39 s~~EF~~~l~~~-g~~~~~~l-~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C~~C~~~l~g~~~~c~~Cf~~~~~~ 116 (230)
++++++..++++ |.. .... +-+|..+..+.+. .++|...+..++..-..|..|+.+..+. -|.-|-|..-+.
T Consensus 5 ~~~~Li~~l~~LPGIG-~KsA~RlA~~ll~~~~~~---~~~la~ai~~~~~~i~~C~~C~~lse~~--~C~IC~d~~Rd~ 78 (195)
T TIGR00615 5 PISKLIESLKKLPGIG-PKSAQRLAFHLLKRDPSE---VLRLAQALLEAKENLRTCSVCGAISDQE--VCNICSDERRDN 78 (195)
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHcCCcCCCCCCCCCCC--cCCCCCCCCCCC
Confidence 366777777777 555 4443 4457787666433 2333333334444346899998877655 388887765444
Q ss_pred cchhhhh
Q 026938 117 YNICLEC 123 (230)
Q Consensus 117 ~~~c~~c 123 (230)
--+|.++
T Consensus 79 ~~iCVVE 85 (195)
T TIGR00615 79 SVICVVE 85 (195)
T ss_pred CEEEEEC
Confidence 4455543
No 169
>PF12773 DZR: Double zinc ribbon
Probab=26.02 E-value=39 Score=21.84 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=22.0
Q ss_pred CCCcchhhhhhhh---hhchhccccccccccccchhh
Q 026938 88 GRPICRQCKIFIT---NEYFTCTRCFKTRSFPYNICL 121 (230)
Q Consensus 88 ~r~~C~~C~~~l~---g~~~~c~~Cf~~~~~~~~~c~ 121 (230)
...+|..|+..|. .....|..|...-...-.+|.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccC
Confidence 3478999999887 234678888655444444443
No 170
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=54 Score=33.69 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=37.2
Q ss_pred Ccchhhhhhhhhhchhccccccccccccchhhh-----hcc-cCCCccccCchhhHHhhhhhhhHHHHHHHHHhccc
Q 026938 90 PICRQCKIFITNEYFTCTRCFKTRSFPYNICLE-----CFR-GEEGHFNHTHSLEQFVDNFALLECLRKEALEENRE 160 (230)
Q Consensus 90 ~~C~~C~~~l~g~~~~c~~Cf~~~~~~~~~c~~-----cf~-~~~~~~~~~h~~~~f~dn~~l~~~~~~~~~~~~~~ 160 (230)
++|-.|.++|||.-..--.|-.+++..++-|.+ |.. ..|...+|... -=..|....-++|.++.+.|.+
T Consensus 184 t~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqraaeks~khg~~--drtq~lv~~irdrmki~e~nkp 258 (1283)
T KOG1011|consen 184 TFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRAAEKSTKHGEA--DRTQSLVNVIRDRMKIQEQNKP 258 (1283)
T ss_pred chhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHHHHhhccccch--hhHHHHHHHHHHHHHHHhhcCh
Confidence 589999999999985433333335556666654 333 22224444222 2233444444555555554444
No 171
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.88 E-value=1.2e+02 Score=29.33 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhc
Q 026938 21 RLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKS 87 (230)
Q Consensus 21 ~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s 87 (230)
..+.++|-.+.+ -+|+|+=..-...|-....+ ..-+-.+++..|.|.||.++-+||.-.-+.++.
T Consensus 444 ~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklp-nsvlgkiwklad~d~dg~ld~eefala~hli~~ 508 (532)
T KOG1954|consen 444 PTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLP-NSVLGKIWKLADIDKDGMLDDEEFALANHLIKL 508 (532)
T ss_pred cchHhhhhcccc-cCceeccchhHHHHHhccCc-hhHHHhhhhhhcCCcccCcCHHHHHHHHHHHhe
Confidence 345666666544 25677644444433222233 445778999999999999999999866555553
No 172
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=24.79 E-value=1.5e+02 Score=25.69 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHh-cCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcchhhhhhhhhhchhcccccccc
Q 026938 39 SYREFSEFMSLE-AYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPICRQCKIFITNEYFTCTRCFKTR 113 (230)
Q Consensus 39 s~~EF~~~l~~~-g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C~~C~~~l~g~~~~c~~Cf~~~ 113 (230)
.++.++..++++ |..+..--+.+|..+..+..+ .+.|...+.-.+..-..|..|+.+.-.. .|.-|-|..
T Consensus 6 ~i~~LI~~l~kLPGvG~KsA~R~AfhLL~~~~~~---~~~la~al~~a~~~i~~C~~C~~~te~d--~C~ICsd~~ 76 (198)
T COG0353 6 PIEKLIDALKKLPGVGPKSAQRLAFHLLQRDRED---VERLAKALLEAKENIKHCSVCGNLTESD--PCDICSDES 76 (198)
T ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHccCHHH---HHHHHHHHHHHHhcCccccccCCcCCCC--cCcCcCCcc
Confidence 355666777776 555223345578888776544 3444444444444446888888887655 577776654
No 173
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=24.24 E-value=1.3e+02 Score=28.24 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHcccCCHHHHHHHHHHHHHhC--------CCCCCcccHHHHHHHHHHh-cCCc-HHHHHHHHHhhCCCCCCceeHHHHH
Q 026938 10 AYYESGTDEERRLFDQFFESMD--------EDGNGRVSYREFSEFMSLE-AYDR-NMCTRDFFNDLDVDGSRGLDFNEVL 79 (230)
Q Consensus 10 a~~~~~seeek~~v~~iF~~~D--------~dgdG~Is~~EF~~~l~~~-g~~~-~~~l~~~Fk~~D~d~dG~IdfeEf~ 79 (230)
.|...++++++....+-+...- .|.-| |.+.+....... |..+ ..+.+.+|...|.|+||.++-.|+-
T Consensus 190 ~yL~~l~eE~Rkeaesk~EE~~krH~~HpKvnhPG--SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELE 267 (442)
T KOG3866|consen 190 HYLAQLTEEERKEAESKHEESLKRHNDHPKVNHPG--SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELE 267 (442)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhhccCccCCCCC--cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHH
Confidence 3445667777666655555431 12333 345566655444 4442 2346779999999999999999999
Q ss_pred HHHH
Q 026938 80 TLYY 83 (230)
Q Consensus 80 ~lly 83 (230)
.++.
T Consensus 268 aLFt 271 (442)
T KOG3866|consen 268 ALFT 271 (442)
T ss_pred HHHH
Confidence 8874
No 174
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.99 E-value=24 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.844 Sum_probs=9.3
Q ss_pred cchhhhhhhhh-hchhcccc
Q 026938 91 ICRQCKIFITN-EYFTCTRC 109 (230)
Q Consensus 91 ~C~~C~~~l~g-~~~~c~~C 109 (230)
.|+.|+..+.+ .++.|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~C 21 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSEC 21 (30)
T ss_dssp --TTTS----S--EEE-TTT
T ss_pred cCCcCCCcCCCCceEECccC
Confidence 47888888877 77889888
No 175
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.65 E-value=21 Score=28.20 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=9.7
Q ss_pred chhhhhhhhhhchhcccc
Q 026938 92 CRQCKIFITNEYFTCTRC 109 (230)
Q Consensus 92 C~~C~~~l~g~~~~c~~C 109 (230)
|+.|++-|.=.=.+|..|
T Consensus 1 CPvCg~~l~vt~l~C~~C 18 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSC 18 (113)
T ss_pred CCCCCCceEEEEEEcCCC
Confidence 555555554444556655
No 176
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.85 E-value=27 Score=23.44 Aligned_cols=22 Identities=23% Similarity=0.789 Sum_probs=16.9
Q ss_pred CCcchhhhh-hhh--hhchhccccc
Q 026938 89 RPICRQCKI-FIT--NEYFTCTRCF 110 (230)
Q Consensus 89 r~~C~~C~~-~l~--g~~~~c~~Cf 110 (230)
+.+|+.|+. ++. ...++|..|.
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cg 44 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCG 44 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcC
Confidence 468999988 775 4457899884
No 177
>PRK00076 recR recombination protein RecR; Reviewed
Probab=22.54 E-value=1.6e+02 Score=25.37 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHh-cCCcHHH-HHHHHHhhCCCCCCceeHHHHHHHHHHhhcCCCcchhhhhhhhhhchhccccccccccc
Q 026938 39 SYREFSEFMSLE-AYDRNMC-TRDFFNDLDVDGSRGLDFNEVLTLYYIIKSGRPICRQCKIFITNEYFTCTRCFKTRSFP 116 (230)
Q Consensus 39 s~~EF~~~l~~~-g~~~~~~-l~~~Fk~~D~d~dG~IdfeEf~~lly~i~s~r~~C~~C~~~l~g~~~~c~~Cf~~~~~~ 116 (230)
++++++..++++ |.. ... .+-+|..+..+.+. .+.|...+..++..-..|..|+.+..+.. |.-|-+..-+.
T Consensus 5 ~~~~Li~~l~~LPGIG-~KsA~Rla~~ll~~~~~~---~~~la~~i~~~~~~i~~C~~C~~lse~~~--C~IC~d~~Rd~ 78 (196)
T PRK00076 5 PIEKLIEALRKLPGIG-PKSAQRLAFHLLQRDRED---VLRLAQALEEAKEKIKHCSVCGNLTEQDP--CEICSDPRRDQ 78 (196)
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHcCCcCCCCCCcCCCCc--CCCCCCCCCCC
Confidence 366777777777 555 433 34467777655322 23333333333333367888888776543 88887665333
Q ss_pred cchhhhh
Q 026938 117 YNICLEC 123 (230)
Q Consensus 117 ~~~c~~c 123 (230)
--+|.++
T Consensus 79 ~~icVVE 85 (196)
T PRK00076 79 SLICVVE 85 (196)
T ss_pred CEEEEEC
Confidence 3455544
No 178
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.00 E-value=18 Score=35.13 Aligned_cols=23 Identities=22% Similarity=0.720 Sum_probs=17.3
Q ss_pred Ccchhhhhhhhhhch--hccccccc
Q 026938 90 PICRQCKIFITNEYF--TCTRCFKT 112 (230)
Q Consensus 90 ~~C~~C~~~l~g~~~--~c~~Cf~~ 112 (230)
..|.+|..||+.-|. +|..|...
T Consensus 137 LyC~vc~~fladr~veg~cp~C~yd 161 (567)
T KOG1247|consen 137 LYCEVCDTFLADRFVEGKCPFCGYD 161 (567)
T ss_pred EEehhhcccccchhhhccCCCCCCc
Confidence 569999999987774 58877644
No 179
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=1.1e+02 Score=32.10 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCcHHHHHHHHHhhCCCCCCceeHHHHHHHHHHh
Q 026938 14 SGTDEERRLFDQFFESMDEDGNGRVSYREFSEFMSLEAYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLYYII 85 (230)
Q Consensus 14 ~~seeek~~v~~iF~~~D~dgdG~Is~~EF~~~l~~~g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~lly~i 85 (230)
..+..++..+..+|..+..+ +|.++-.--..++..-... ...+-.++..-|.|.+|.+++.||...++.+
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp-~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLP-SDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCC-hhhhccccccccccccCCCChhhhhhhhhHH
Confidence 35666777888899998876 7777766555555544444 4556678999999999999999999887643
No 180
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.81 E-value=76 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.9
Q ss_pred CchHHhhhhHHHHHHHHHHhhh
Q 026938 198 NIPAERRNRWGTAFRILETGLH 219 (230)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~ 219 (230)
+--|+.|..|-+|+|+++-|..
T Consensus 91 aeDe~t~~~W~ta~Ri~KyG~q 112 (114)
T cd01259 91 AEDLPTLDRWLTAIRIAKYGKQ 112 (114)
T ss_pred cCCHHHHHHHHHHHHHHhhhhh
Confidence 3446799999999999998853
No 181
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.45 E-value=28 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=14.8
Q ss_pred CCcchhhhhhhhhhch---hcccc
Q 026938 89 RPICRQCKIFITNEYF---TCTRC 109 (230)
Q Consensus 89 r~~C~~C~~~l~g~~~---~c~~C 109 (230)
...|+.|+..+||... .|..|
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C 34 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWC 34 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTT
T ss_pred CCCCcccCcccCCCCCCeEEECCC
Confidence 3689999999988654 45555
No 182
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=20.01 E-value=3.9e+02 Score=20.06 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHHh-cCCcHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 026938 36 GRVSYREFSEFMSLE-AYDRNMCTRDFFNDLDVDGSRGLDFNEVLTLY 82 (230)
Q Consensus 36 G~Is~~EF~~~l~~~-g~~~~~~l~~~Fk~~D~d~dG~IdfeEf~~ll 82 (230)
-.|+..+|...+... +.....+...+=.-+|.-.||+||.=||-...
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 457788888877665 44423333444456677888888777765544
Done!