Query 026940
Match_columns 230
No_of_seqs 355 out of 2476
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 3.5E-21 7.7E-26 133.1 10.0 95 134-228 9-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 4.9E-20 1.1E-24 127.4 9.8 97 56-152 7-103 (103)
3 cd01807 GDX_N ubiquitin-like d 99.8 4.3E-20 9.3E-25 120.9 7.4 73 1-73 1-73 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.9E-19 4.1E-24 117.8 8.0 74 153-228 1-74 (74)
5 PTZ00044 ubiquitin; Provisiona 99.8 3.2E-19 6.8E-24 117.5 7.7 74 1-74 1-74 (76)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 3.3E-19 7.1E-24 116.7 7.6 73 1-75 1-73 (74)
7 cd01810 ISG15_repeat2 ISG15 ub 99.8 4.2E-19 9.1E-24 116.2 7.3 74 155-228 1-74 (74)
8 PTZ00044 ubiquitin; Provisiona 99.8 6E-19 1.3E-23 116.2 8.0 76 153-228 1-76 (76)
9 cd01797 NIRF_N amino-terminal 99.8 4.5E-19 9.7E-24 116.7 7.2 75 1-75 1-77 (78)
10 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 6.7E-19 1.5E-23 114.1 7.2 71 1-71 2-72 (73)
11 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.4E-18 2.9E-23 114.5 8.4 76 153-228 1-76 (76)
12 cd01803 Ubiquitin Ubiquitin. U 99.8 1.5E-18 3.2E-23 114.4 8.0 76 153-228 1-76 (76)
13 cd01807 GDX_N ubiquitin-like d 99.8 1.6E-18 3.5E-23 113.4 7.2 73 77-149 1-73 (74)
14 cd01804 midnolin_N Ubiquitin-l 99.8 2.3E-18 5E-23 113.6 7.9 76 153-229 2-77 (78)
15 cd01803 Ubiquitin Ubiquitin. U 99.8 2.4E-18 5.1E-23 113.4 7.7 74 1-74 1-74 (76)
16 cd01806 Nedd8 Nebb8-like ubiq 99.8 3.2E-18 7E-23 112.7 8.1 74 1-74 1-74 (76)
17 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 3E-18 6.5E-23 111.1 7.3 71 153-223 2-72 (73)
18 cd01804 midnolin_N Ubiquitin-l 99.8 3.3E-18 7.2E-23 112.8 7.5 74 1-75 2-75 (78)
19 cd01810 ISG15_repeat2 ISG15 ub 99.8 2.6E-18 5.7E-23 112.4 6.9 72 3-74 1-72 (74)
20 cd01805 RAD23_N Ubiquitin-like 99.7 8.1E-18 1.7E-22 111.1 7.9 73 1-73 1-75 (77)
21 cd01809 Scythe_N Ubiquitin-lik 99.7 7.8E-18 1.7E-22 109.7 7.4 72 1-72 1-72 (72)
22 cd01794 DC_UbP_C dendritic cel 99.7 5.5E-18 1.2E-22 109.1 6.2 68 4-71 2-69 (70)
23 cd01797 NIRF_N amino-terminal 99.7 1.1E-17 2.4E-22 110.0 7.5 75 153-227 1-77 (78)
24 cd01798 parkin_N amino-termina 99.7 8.7E-18 1.9E-22 108.7 6.4 70 3-72 1-70 (70)
25 PF00240 ubiquitin: Ubiquitin 99.7 2.9E-17 6.3E-22 106.1 7.6 69 158-226 1-69 (69)
26 cd01798 parkin_N amino-termina 99.7 1.7E-17 3.8E-22 107.3 6.5 70 155-224 1-70 (70)
27 cd01805 RAD23_N Ubiquitin-like 99.7 4.7E-17 1E-21 107.4 8.1 74 153-226 1-76 (77)
28 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.5E-17 5.5E-22 109.3 6.7 73 1-73 3-77 (80)
29 KOG0005 Ubiquitin-like protein 99.7 1.1E-17 2.4E-22 99.4 4.2 70 1-70 1-70 (70)
30 cd01800 SF3a120_C Ubiquitin-li 99.7 3.1E-17 6.8E-22 107.7 6.7 70 160-229 5-74 (76)
31 cd01794 DC_UbP_C dendritic cel 99.7 4.4E-17 9.6E-22 104.9 6.8 68 80-147 2-69 (70)
32 PF00240 ubiquitin: Ubiquitin 99.7 6.6E-17 1.4E-21 104.4 7.2 68 6-73 1-68 (69)
33 cd01809 Scythe_N Ubiquitin-lik 99.7 8.3E-17 1.8E-21 104.8 7.4 72 153-224 1-72 (72)
34 cd01792 ISG15_repeat1 ISG15 ub 99.7 6.3E-17 1.4E-21 107.4 6.8 73 153-225 3-77 (80)
35 cd01808 hPLIC_N Ubiquitin-like 99.7 1.2E-16 2.6E-21 103.7 7.0 71 1-72 1-71 (71)
36 KOG0003 Ubiquitin/60s ribosoma 99.7 5.4E-18 1.2E-22 113.0 0.1 76 154-229 2-77 (128)
37 cd01796 DDI1_N DNA damage indu 99.7 1.2E-16 2.6E-21 103.4 6.0 68 3-70 1-70 (71)
38 cd01808 hPLIC_N Ubiquitin-like 99.7 1.9E-16 4.1E-21 102.7 6.9 71 153-224 1-71 (71)
39 KOG0003 Ubiquitin/60s ribosoma 99.7 1.5E-17 3.3E-22 110.9 1.4 76 1-76 1-76 (128)
40 cd01763 Sumo Small ubiquitin-r 99.7 5E-16 1.1E-20 104.6 8.7 78 151-228 10-87 (87)
41 cd01812 BAG1_N Ubiquitin-like 99.7 3.5E-16 7.6E-21 101.6 6.9 70 1-71 1-70 (71)
42 KOG0004 Ubiquitin/40S ribosoma 99.6 8.8E-17 1.9E-21 115.3 3.9 76 1-76 1-76 (156)
43 cd01800 SF3a120_C Ubiquitin-li 99.6 4.7E-16 1E-20 102.1 6.2 68 8-75 5-72 (76)
44 cd01790 Herp_N Homocysteine-re 99.6 6.2E-16 1.4E-20 100.7 6.5 71 153-223 2-78 (79)
45 cd01796 DDI1_N DNA damage indu 99.6 5.6E-16 1.2E-20 100.3 6.2 68 155-222 1-70 (71)
46 cd01813 UBP_N UBP ubiquitin pr 99.6 8E-16 1.7E-20 100.2 6.6 68 154-222 2-72 (74)
47 KOG0004 Ubiquitin/40S ribosoma 99.6 3.7E-16 8.1E-21 112.1 4.5 77 153-229 1-77 (156)
48 cd01812 BAG1_N Ubiquitin-like 99.6 1.3E-15 2.9E-20 98.8 6.7 70 153-223 1-70 (71)
49 cd01813 UBP_N UBP ubiquitin pr 99.6 2E-15 4.4E-20 98.2 6.9 69 1-70 1-72 (74)
50 cd01790 Herp_N Homocysteine-re 99.6 1.4E-15 3.1E-20 99.0 6.1 70 1-70 2-77 (79)
51 KOG0005 Ubiquitin-like protein 99.6 1.1E-15 2.3E-20 91.0 4.5 70 77-146 1-70 (70)
52 smart00213 UBQ Ubiquitin homol 99.6 9.1E-15 2E-19 92.8 6.5 64 1-65 1-64 (64)
53 cd01763 Sumo Small ubiquitin-r 99.6 3.6E-14 7.7E-19 95.5 8.9 79 74-152 9-87 (87)
54 cd01799 Hoil1_N Ubiquitin-like 99.5 1.6E-14 3.5E-19 94.1 5.8 64 7-71 9-74 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.5 3.4E-14 7.3E-19 92.6 6.5 66 157-223 7-74 (75)
56 smart00213 UBQ Ubiquitin homol 99.5 6.8E-14 1.5E-18 88.7 6.0 64 153-217 1-64 (64)
57 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 4.1E-14 9E-19 90.8 4.3 54 171-224 19-75 (75)
58 TIGR00601 rad23 UV excision re 99.5 1.1E-13 2.3E-18 116.4 7.4 73 1-73 1-76 (378)
59 cd01795 USP48_C USP ubiquitin- 99.5 1.3E-13 2.9E-18 91.5 5.5 62 12-73 16-78 (107)
60 TIGR00601 rad23 UV excision re 99.4 3.2E-13 7E-18 113.5 7.6 73 153-225 1-76 (378)
61 KOG0010 Ubiquitin-like protein 99.4 5.6E-13 1.2E-17 112.5 6.4 74 152-226 15-88 (493)
62 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 8.8E-13 1.9E-17 84.7 5.1 53 95-147 19-74 (75)
63 cd01769 UBL Ubiquitin-like dom 99.4 1.8E-12 3.9E-17 83.4 6.6 67 5-71 2-68 (69)
64 cd01769 UBL Ubiquitin-like dom 99.4 1.7E-12 3.8E-17 83.4 6.1 67 157-223 2-68 (69)
65 cd01814 NTGP5 Ubiquitin-like N 99.4 1.3E-12 2.9E-17 89.5 5.5 77 75-151 3-93 (113)
66 PF11976 Rad60-SLD: Ubiquitin- 99.3 5.4E-12 1.2E-16 82.0 7.5 71 153-223 1-72 (72)
67 cd01795 USP48_C USP ubiquitin- 99.3 2.4E-12 5.2E-17 85.6 5.7 62 164-225 16-78 (107)
68 cd01814 NTGP5 Ubiquitin-like N 99.3 1.5E-12 3.3E-17 89.2 4.0 73 2-74 6-92 (113)
69 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.7E-11 3.6E-16 79.7 7.4 71 77-147 1-72 (72)
70 KOG0010 Ubiquitin-like protein 99.2 1.2E-11 2.5E-16 104.6 5.6 73 1-74 16-88 (493)
71 KOG0011 Nucleotide excision re 99.2 2.4E-11 5.2E-16 97.8 6.2 74 1-74 1-76 (340)
72 cd01789 Alp11_N Ubiquitin-like 99.2 8.9E-11 1.9E-15 78.3 7.1 70 2-71 3-80 (84)
73 cd01789 Alp11_N Ubiquitin-like 99.1 2E-10 4.4E-15 76.6 7.5 69 155-223 4-80 (84)
74 KOG0011 Nucleotide excision re 99.1 1.2E-10 2.6E-15 93.8 6.7 74 77-150 1-76 (340)
75 cd01788 ElonginB Ubiquitin-lik 99.1 2.1E-10 4.6E-15 78.3 6.2 72 1-72 1-80 (119)
76 cd01788 ElonginB Ubiquitin-lik 99.1 3.5E-10 7.6E-15 77.2 7.0 71 160-230 9-86 (119)
77 PF14560 Ubiquitin_2: Ubiquiti 99.1 5.2E-10 1.1E-14 75.3 7.4 70 2-71 3-82 (87)
78 PF14560 Ubiquitin_2: Ubiquiti 99.1 6.4E-10 1.4E-14 74.9 7.4 69 154-222 3-81 (87)
79 PLN02560 enoyl-CoA reductase 99.0 1E-09 2.2E-14 90.3 7.3 70 1-70 1-81 (308)
80 cd01811 OASL_repeat1 2'-5' oli 99.0 4.6E-09 9.9E-14 66.0 7.0 72 1-73 1-77 (80)
81 KOG0001 Ubiquitin and ubiquiti 98.9 8.3E-09 1.8E-13 66.6 8.7 73 155-227 2-74 (75)
82 KOG0001 Ubiquitin and ubiquiti 98.9 5.6E-09 1.2E-13 67.5 7.6 72 3-74 2-73 (75)
83 PLN02560 enoyl-CoA reductase 98.9 3.5E-09 7.6E-14 87.2 6.7 69 153-221 1-80 (308)
84 PF13881 Rad60-SLD_2: Ubiquiti 98.8 1.5E-08 3.2E-13 70.9 7.0 74 76-149 2-89 (111)
85 KOG4248 Ubiquitin-like protein 98.8 5E-09 1.1E-13 95.4 5.5 74 2-76 4-77 (1143)
86 cd01801 Tsc13_N Ubiquitin-like 98.8 1.5E-08 3.2E-13 66.6 5.4 52 170-221 20-74 (77)
87 PF11543 UN_NPL4: Nuclear pore 98.7 3.3E-08 7.1E-13 65.1 6.2 69 1-70 5-78 (80)
88 cd01801 Tsc13_N Ubiquitin-like 98.7 3.3E-08 7.2E-13 64.9 5.9 68 2-69 2-74 (77)
89 PF13881 Rad60-SLD_2: Ubiquiti 98.7 3E-07 6.6E-12 64.2 9.6 72 154-225 4-89 (111)
90 KOG4248 Ubiquitin-like protein 98.6 3.5E-08 7.6E-13 90.1 5.5 74 78-152 4-77 (1143)
91 PF11543 UN_NPL4: Nuclear pore 98.6 1.3E-07 2.9E-12 62.2 5.0 70 152-222 4-78 (80)
92 KOG1769 Ubiquitin-like protein 98.6 8.4E-07 1.8E-11 59.4 8.6 78 152-229 20-97 (99)
93 KOG3493 Ubiquitin-like protein 98.5 3.8E-08 8.1E-13 59.9 1.2 69 155-223 4-72 (73)
94 cd01811 OASL_repeat1 2'-5' oli 98.5 1.3E-06 2.8E-11 55.1 7.2 71 77-148 1-76 (80)
95 cd00196 UBQ Ubiquitin-like pro 98.5 7.4E-07 1.6E-11 55.2 6.4 64 160-223 5-68 (69)
96 cd00196 UBQ Ubiquitin-like pro 98.5 7.2E-07 1.6E-11 55.2 6.3 66 6-71 3-68 (69)
97 KOG4495 RNA polymerase II tran 98.4 5.6E-07 1.2E-11 59.4 4.6 65 1-65 1-68 (110)
98 KOG1769 Ubiquitin-like protein 98.3 8.7E-06 1.9E-10 54.6 9.3 78 75-152 19-96 (99)
99 KOG0006 E3 ubiquitin-protein l 98.3 1.8E-06 3.9E-11 69.5 6.1 73 1-73 1-77 (446)
100 KOG1872 Ubiquitin-specific pro 98.2 2.4E-06 5.3E-11 72.4 6.0 70 154-224 5-75 (473)
101 KOG3493 Ubiquitin-like protein 98.2 5.2E-07 1.1E-11 55.0 0.9 69 78-146 3-71 (73)
102 KOG1872 Ubiquitin-specific pro 98.1 4.2E-06 9.2E-11 71.0 5.3 70 3-73 6-76 (473)
103 PF11470 TUG-UBL1: GLUT4 regul 98.0 2E-05 4.4E-10 49.4 5.4 63 159-221 3-65 (65)
104 COG5227 SMT3 Ubiquitin-like pr 98.0 7.2E-06 1.6E-10 53.6 3.0 79 152-230 24-102 (103)
105 KOG4495 RNA polymerase II tran 98.0 8.2E-06 1.8E-10 54.0 3.2 54 160-213 9-64 (110)
106 KOG0006 E3 ubiquitin-protein l 97.9 2.7E-05 5.8E-10 62.9 5.2 60 163-222 14-73 (446)
107 PF08817 YukD: WXG100 protein 97.9 5.1E-05 1.1E-09 49.9 5.7 68 154-221 4-78 (79)
108 PF11470 TUG-UBL1: GLUT4 regul 97.8 9.2E-05 2E-09 46.5 6.0 63 83-145 3-65 (65)
109 PF08817 YukD: WXG100 protein 97.7 0.00011 2.5E-09 48.2 5.4 68 2-69 4-78 (79)
110 PF00789 UBX: UBX domain; Int 97.6 0.00052 1.1E-08 45.3 7.9 71 152-222 6-81 (82)
111 PF13019 Telomere_Sde2: Telome 97.5 0.00056 1.2E-08 50.6 7.7 76 153-228 1-88 (162)
112 smart00166 UBX Domain present 97.5 0.00064 1.4E-08 44.7 6.8 69 153-221 5-78 (80)
113 cd01772 SAKS1_UBX SAKS1-like U 97.3 0.0017 3.7E-08 42.6 7.1 68 153-221 5-77 (79)
114 smart00166 UBX Domain present 97.3 0.0025 5.3E-08 41.9 7.6 71 75-145 3-78 (80)
115 PF00789 UBX: UBX domain; Int 97.2 0.0025 5.5E-08 42.0 7.6 68 2-69 8-80 (82)
116 cd01767 UBX UBX (ubiquitin reg 97.2 0.0029 6.2E-08 41.3 7.4 67 153-221 3-74 (77)
117 PF13019 Telomere_Sde2: Telome 97.2 0.0024 5.2E-08 47.3 7.5 64 1-64 1-72 (162)
118 cd01770 p47_UBX p47-like ubiqu 97.2 0.0022 4.8E-08 42.0 6.5 67 153-219 5-75 (79)
119 COG5417 Uncharacterized small 97.1 0.0038 8.2E-08 39.5 7.0 67 155-221 9-80 (81)
120 cd01773 Faf1_like1_UBX Faf1 ik 97.1 0.0039 8.4E-08 41.0 7.3 71 153-224 6-81 (82)
121 cd01774 Faf1_like2_UBX Faf1 ik 97.1 0.004 8.6E-08 41.4 7.3 70 152-222 4-83 (85)
122 COG5227 SMT3 Ubiquitin-like pr 97.1 0.0027 5.8E-08 41.7 6.0 72 76-147 24-95 (103)
123 KOG1639 Steroid reductase requ 97.0 0.0011 2.3E-08 52.1 4.7 69 1-69 1-76 (297)
124 cd01771 Faf1_UBX Faf1 UBX doma 97.0 0.0053 1.2E-07 40.3 7.3 70 152-222 4-78 (80)
125 KOG0013 Uncharacterized conser 97.0 0.0011 2.3E-08 50.7 4.4 63 9-71 155-217 (231)
126 cd01772 SAKS1_UBX SAKS1-like U 97.0 0.0052 1.1E-07 40.3 7.0 67 2-69 6-77 (79)
127 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0028 6.1E-08 43.2 5.8 50 89-138 14-67 (97)
128 PF14533 USP7_C2: Ubiquitin-sp 96.9 0.0077 1.7E-07 47.4 8.9 102 11-114 34-160 (213)
129 cd01770 p47_UBX p47-like ubiqu 96.9 0.0081 1.8E-07 39.4 7.4 67 76-142 4-74 (79)
130 cd01767 UBX UBX (ubiquitin reg 96.8 0.009 1.9E-07 38.9 7.1 63 2-65 4-71 (77)
131 cd01774 Faf1_like2_UBX Faf1 ik 96.8 0.014 3E-07 38.8 7.7 70 75-145 3-82 (85)
132 cd01773 Faf1_like1_UBX Faf1 ik 96.6 0.024 5.2E-07 37.3 7.7 69 2-71 7-80 (82)
133 KOG1639 Steroid reductase requ 96.5 0.0042 9.1E-08 48.9 4.3 69 153-221 1-76 (297)
134 cd01771 Faf1_UBX Faf1 UBX doma 96.5 0.029 6.2E-07 36.9 7.7 70 76-146 4-78 (80)
135 PF14836 Ubiquitin_3: Ubiquiti 96.5 0.024 5.1E-07 37.7 7.2 67 163-230 14-86 (88)
136 COG5417 Uncharacterized small 96.5 0.016 3.5E-07 36.7 6.0 66 4-69 10-80 (81)
137 PF10302 DUF2407: DUF2407 ubiq 96.4 0.01 2.2E-07 40.5 5.3 59 3-61 3-66 (97)
138 KOG0013 Uncharacterized conser 96.3 0.0073 1.6E-07 46.3 4.7 62 85-146 155-216 (231)
139 PF10790 DUF2604: Protein of U 96.2 0.022 4.8E-07 35.0 5.5 66 161-226 4-73 (76)
140 PRK06437 hypothetical protein; 96.2 0.06 1.3E-06 34.0 7.6 59 161-228 9-67 (67)
141 KOG3206 Alpha-tubulin folding 96.1 0.02 4.3E-07 43.9 5.9 59 165-223 15-80 (234)
142 PF12436 USP7_ICP0_bdg: ICP0-b 95.9 0.043 9.2E-07 44.3 7.6 119 2-120 70-223 (249)
143 PF15044 CLU_N: Mitochondrial 95.9 0.017 3.7E-07 37.5 4.2 57 169-225 1-59 (76)
144 PF12436 USP7_ICP0_bdg: ICP0-b 95.8 0.075 1.6E-06 42.8 8.5 107 90-196 88-223 (249)
145 PF14533 USP7_C2: Ubiquitin-sp 95.6 0.083 1.8E-06 41.6 8.1 103 87-191 34-161 (213)
146 KOG3206 Alpha-tubulin folding 95.4 0.062 1.3E-06 41.2 6.2 61 89-149 15-82 (234)
147 PF09379 FERM_N: FERM N-termin 95.3 0.13 2.9E-06 33.4 7.1 68 157-224 1-77 (80)
148 PRK08364 sulfur carrier protei 95.3 0.26 5.6E-06 31.4 8.2 56 164-228 15-70 (70)
149 cd00754 MoaD Ubiquitin domain 95.0 0.099 2.1E-06 34.0 5.7 60 164-228 17-80 (80)
150 PF11620 GABP-alpha: GA-bindin 94.9 0.082 1.8E-06 34.6 4.9 61 12-72 4-64 (88)
151 PRK06488 sulfur carrier protei 94.8 0.24 5.2E-06 30.9 6.9 61 160-228 5-65 (65)
152 PRK06437 hypothetical protein; 94.7 0.26 5.6E-06 31.1 6.7 62 1-71 1-62 (67)
153 PF11620 GABP-alpha: GA-bindin 94.6 0.22 4.7E-06 32.7 6.2 60 165-224 5-64 (88)
154 PF09379 FERM_N: FERM N-termin 94.4 0.37 8E-06 31.2 7.3 58 5-62 1-65 (80)
155 cd06406 PB1_P67 A PB1 domain i 94.3 0.26 5.6E-06 32.2 6.1 38 88-125 12-49 (80)
156 PF14836 Ubiquitin_3: Ubiquiti 94.2 0.31 6.7E-06 32.4 6.5 62 11-73 14-81 (88)
157 cd06406 PB1_P67 A PB1 domain i 94.2 0.23 4.9E-06 32.4 5.7 37 164-200 12-48 (80)
158 PF15044 CLU_N: Mitochondrial 94.1 0.12 2.7E-06 33.5 4.4 56 93-148 1-58 (76)
159 cd00565 ThiS ThiaminS ubiquiti 93.8 0.4 8.6E-06 29.9 6.3 57 167-228 9-65 (65)
160 cd06409 PB1_MUG70 The MUG70 pr 93.6 0.26 5.6E-06 32.7 5.2 45 79-123 3-50 (86)
161 KOG4583 Membrane-associated ER 93.5 0.03 6.4E-07 46.1 0.9 61 152-212 9-73 (391)
162 TIGR01683 thiS thiamine biosyn 93.4 0.55 1.2E-05 29.2 6.4 61 161-228 4-64 (64)
163 PF02597 ThiS: ThiS family; I 93.1 0.36 7.8E-06 31.0 5.5 63 164-228 13-77 (77)
164 cd06407 PB1_NLP A PB1 domain i 93.1 0.42 9E-06 31.5 5.7 47 78-125 2-49 (82)
165 cd06407 PB1_NLP A PB1 domain i 93.1 0.52 1.1E-05 31.0 6.1 45 1-46 1-46 (82)
166 PF12754 Blt1: Cell-cycle cont 92.6 0.033 7.3E-07 45.5 0.0 57 172-228 103-181 (309)
167 TIGR01682 moaD molybdopterin c 92.6 0.75 1.6E-05 29.9 6.4 60 164-228 17-80 (80)
168 PLN02799 Molybdopterin synthas 92.4 0.56 1.2E-05 30.7 5.7 61 163-228 19-82 (82)
169 cd01760 RBD Ubiquitin-like dom 92.3 0.74 1.6E-05 29.5 5.9 45 155-199 2-46 (72)
170 PRK06488 sulfur carrier protei 92.3 0.89 1.9E-05 28.3 6.3 61 1-72 1-61 (65)
171 cd06409 PB1_MUG70 The MUG70 pr 91.9 0.78 1.7E-05 30.5 5.7 37 3-39 3-39 (86)
172 smart00666 PB1 PB1 domain. Pho 91.8 1.1 2.3E-05 29.2 6.5 46 78-124 3-48 (81)
173 cd00754 MoaD Ubiquitin domain 91.8 0.52 1.1E-05 30.5 5.0 59 88-151 17-79 (80)
174 smart00666 PB1 PB1 domain. Pho 91.6 1 2.2E-05 29.2 6.3 44 2-46 3-46 (81)
175 KOG2982 Uncharacterized conser 91.6 0.4 8.8E-06 39.6 5.0 57 167-223 352-416 (418)
176 TIGR01687 moaD_arch MoaD famil 91.5 1.4 3.1E-05 29.1 7.0 61 164-228 17-88 (88)
177 PRK08364 sulfur carrier protei 91.5 1.2 2.6E-05 28.2 6.2 54 9-71 10-65 (70)
178 PF10790 DUF2604: Protein of U 91.4 0.99 2.1E-05 27.9 5.3 65 84-148 3-71 (76)
179 smart00455 RBD Raf-like Ras-bi 91.2 0.57 1.2E-05 29.8 4.5 44 156-199 3-46 (70)
180 PRK07440 hypothetical protein; 91.1 2.3 5E-05 27.0 7.2 61 161-228 10-70 (70)
181 KOG0012 DNA damage inducible p 91.0 0.28 6E-06 41.0 3.6 65 161-225 11-77 (380)
182 KOG4250 TANK binding protein k 90.9 0.71 1.5E-05 42.2 6.3 43 8-50 322-364 (732)
183 KOG2086 Protein tyrosine phosp 90.8 0.56 1.2E-05 39.6 5.3 69 75-143 304-376 (380)
184 cd06408 PB1_NoxR The PB1 domai 90.6 1.6 3.5E-05 28.9 6.2 44 3-47 3-47 (86)
185 smart00455 RBD Raf-like Ras-bi 90.6 0.74 1.6E-05 29.3 4.6 44 80-123 3-46 (70)
186 PF14453 ThiS-like: ThiS-like 90.5 2.1 4.5E-05 26.0 6.2 48 166-224 9-56 (57)
187 PRK08053 sulfur carrier protei 90.4 3 6.5E-05 26.0 7.4 61 161-228 6-66 (66)
188 KOG2086 Protein tyrosine phosp 90.2 0.58 1.3E-05 39.6 4.9 68 152-219 305-376 (380)
189 PRK07696 sulfur carrier protei 90.1 2.8 6E-05 26.3 6.9 61 161-228 6-67 (67)
190 cd01760 RBD Ubiquitin-like dom 89.9 1.3 2.8E-05 28.4 5.2 45 3-47 2-46 (72)
191 PRK05659 sulfur carrier protei 89.6 2.4 5.2E-05 26.3 6.4 61 161-228 6-66 (66)
192 PRK05863 sulfur carrier protei 89.4 1.9 4.1E-05 26.9 5.7 60 161-228 6-65 (65)
193 KOG4598 Putative ubiquitin-spe 89.1 1.5 3.2E-05 40.2 6.7 183 11-196 877-1105(1203)
194 smart00295 B41 Band 4.1 homolo 89.0 3.7 7.9E-05 31.5 8.4 74 152-225 3-84 (207)
195 KOG4583 Membrane-associated ER 89.0 0.19 4.1E-06 41.6 1.1 62 77-138 10-75 (391)
196 PRK06083 sulfur carrier protei 88.8 2.6 5.7E-05 27.8 6.3 62 160-228 23-84 (84)
197 PLN02799 Molybdopterin synthas 88.5 1.3 2.9E-05 28.9 4.8 59 87-150 19-80 (82)
198 PRK05659 sulfur carrier protei 88.5 3.4 7.4E-05 25.6 6.5 61 1-71 1-61 (66)
199 cd06408 PB1_NoxR The PB1 domai 87.6 3.6 7.8E-05 27.3 6.3 46 77-124 3-48 (86)
200 KOG0012 DNA damage inducible p 87.5 1 2.2E-05 37.8 4.4 64 85-148 11-76 (380)
201 PRK05863 sulfur carrier protei 87.5 3.6 7.9E-05 25.6 6.1 60 1-71 1-60 (65)
202 PF02196 RBD: Raf-like Ras-bin 87.2 2.8 6E-05 26.7 5.5 49 155-203 3-53 (71)
203 PF02196 RBD: Raf-like Ras-bin 87.1 2.9 6.3E-05 26.6 5.6 51 79-129 3-55 (71)
204 PRK08053 sulfur carrier protei 87.1 5.1 0.00011 25.0 6.6 62 1-72 1-62 (66)
205 KOG2689 Predicted ubiquitin re 86.8 1.5 3.3E-05 35.3 5.0 69 153-221 211-284 (290)
206 TIGR01682 moaD molybdopterin c 86.3 3.4 7.4E-05 26.7 5.8 59 88-151 17-79 (80)
207 TIGR02958 sec_mycoba_snm4 secr 86.2 3.6 7.7E-05 36.3 7.4 70 2-72 4-80 (452)
208 COG2104 ThiS Sulfur transfer p 85.5 6.4 0.00014 24.8 6.4 58 166-228 11-68 (68)
209 TIGR02958 sec_mycoba_snm4 secr 85.5 3.3 7.1E-05 36.5 6.9 71 155-226 5-82 (452)
210 PRK07696 sulfur carrier protei 85.5 6.5 0.00014 24.6 6.5 61 1-71 1-62 (67)
211 PF12754 Blt1: Cell-cycle cont 85.5 0.25 5.5E-06 40.6 0.0 62 77-138 79-160 (309)
212 PRK06944 sulfur carrier protei 85.4 6.5 0.00014 24.2 6.6 60 161-228 6-65 (65)
213 PF00564 PB1: PB1 domain; Int 85.2 4.4 9.5E-05 26.3 5.9 46 78-124 3-49 (84)
214 smart00295 B41 Band 4.1 homolo 85.0 6.8 0.00015 30.0 7.9 37 2-38 5-41 (207)
215 PF10209 DUF2340: Uncharacteri 84.1 1.9 4.2E-05 30.5 3.9 56 169-224 22-108 (122)
216 TIGR01687 moaD_arch MoaD famil 84.0 3.4 7.3E-05 27.3 5.0 61 87-151 16-87 (88)
217 PF14453 ThiS-like: ThiS-like 84.0 4 8.6E-05 24.8 4.7 53 1-69 1-53 (57)
218 cd05992 PB1 The PB1 domain is 83.9 3.5 7.6E-05 26.5 5.0 39 161-199 8-47 (81)
219 cd00565 ThiS ThiaminS ubiquiti 83.9 3.3 7.2E-05 25.7 4.7 60 85-151 5-64 (65)
220 PF14732 UAE_UbL: Ubiquitin/SU 83.6 4.8 0.0001 26.8 5.5 55 167-221 2-66 (87)
221 PRK11840 bifunctional sulfur c 83.5 7.1 0.00015 32.7 7.6 63 161-230 6-68 (326)
222 PF10209 DUF2340: Uncharacteri 83.0 2.2 4.8E-05 30.1 3.8 55 17-71 22-107 (122)
223 PF02597 ThiS: ThiS family; I 83.0 2.4 5.2E-05 27.0 3.9 62 88-151 13-76 (77)
224 cd06411 PB1_p51 The PB1 domain 82.5 3.2 7E-05 26.9 4.1 36 88-123 8-43 (78)
225 PF00564 PB1: PB1 domain; Int 82.3 6.2 0.00014 25.5 5.8 38 9-46 9-47 (84)
226 cd06396 PB1_NBR1 The PB1 domai 82.2 6.2 0.00013 25.9 5.4 37 83-121 6-44 (81)
227 KOG4250 TANK binding protein k 82.2 4.2 9.2E-05 37.4 6.2 44 83-126 321-364 (732)
228 PRK07440 hypothetical protein; 82.1 9.4 0.0002 24.2 6.2 56 9-71 10-65 (70)
229 cd05992 PB1 The PB1 domain is 81.8 6.6 0.00014 25.2 5.7 43 3-46 3-46 (81)
230 cd01818 TIAM1_RBD Ubiquitin do 81.3 5.1 0.00011 25.8 4.7 41 156-196 3-43 (77)
231 KOG4261 Talin [Cytoskeleton] 81.2 8.8 0.00019 35.8 7.8 101 86-189 12-121 (1003)
232 cd06410 PB1_UP2 Uncharacterize 80.4 7.4 0.00016 26.5 5.6 41 5-46 17-57 (97)
233 PRK06083 sulfur carrier protei 80.3 9.7 0.00021 25.1 6.0 56 9-71 24-79 (84)
234 cd06398 PB1_Joka2 The PB1 doma 79.6 16 0.00035 24.5 7.2 41 84-124 7-53 (91)
235 PTZ00380 microtubule-associate 79.4 2.4 5.2E-05 30.0 3.0 48 11-58 41-88 (121)
236 TIGR01683 thiS thiamine biosyn 79.4 8 0.00017 23.8 5.2 57 9-72 4-60 (64)
237 cd01817 RGS12_RBD Ubiquitin do 79.2 6.7 0.00015 25.1 4.7 44 81-124 4-47 (73)
238 PF10407 Cytokin_check_N: Cdc1 79.1 9.3 0.0002 24.5 5.4 67 11-82 3-70 (73)
239 cd06411 PB1_p51 The PB1 domain 78.6 5.2 0.00011 26.0 4.1 36 11-46 7-42 (78)
240 cd06396 PB1_NBR1 The PB1 domai 78.6 11 0.00024 24.7 5.7 35 2-37 2-38 (81)
241 PF11069 DUF2870: Protein of u 78.4 3.4 7.4E-05 28.0 3.3 35 194-228 3-38 (98)
242 KOG2689 Predicted ubiquitin re 78.3 8.1 0.00017 31.4 6.0 71 75-145 209-284 (290)
243 PTZ00380 microtubule-associate 77.5 4.5 9.7E-05 28.7 3.9 74 74-147 25-104 (121)
244 PF08337 Plexin_cytopl: Plexin 77.2 4.3 9.4E-05 36.4 4.7 65 162-226 201-291 (539)
245 KOG4572 Predicted DNA-binding 77.0 4.4 9.5E-05 37.9 4.7 64 161-224 3-70 (1424)
246 PF14451 Ub-Mut7C: Mut7-C ubiq 77.0 8.2 0.00018 25.3 4.8 54 10-72 22-76 (81)
247 cd01818 TIAM1_RBD Ubiquitin do 76.7 8.8 0.00019 24.7 4.7 42 80-121 3-44 (77)
248 PRK11130 moaD molybdopterin sy 76.6 17 0.00037 23.6 6.4 57 167-228 19-81 (81)
249 cd06410 PB1_UP2 Uncharacterize 76.2 10 0.00022 25.8 5.3 40 81-121 17-56 (97)
250 KOG2982 Uncharacterized conser 76.0 4 8.6E-05 34.0 3.8 54 92-145 353-414 (418)
251 cd01817 RGS12_RBD Ubiquitin do 74.9 16 0.00034 23.4 5.5 42 6-47 5-46 (73)
252 PF14732 UAE_UbL: Ubiquitin/SU 73.8 18 0.0004 23.9 6.0 58 16-73 3-70 (87)
253 cd01764 Urm1 Urm1-like ubuitin 73.5 7.4 0.00016 26.3 4.1 56 171-228 27-94 (94)
254 cd01775 CYR1_RA Ubiquitin doma 73.4 18 0.00039 24.5 5.8 42 79-120 5-47 (97)
255 cd01787 GRB7_RA RA (RAS-associ 72.7 24 0.00051 23.4 6.1 59 77-135 3-68 (85)
256 KOG4261 Talin [Cytoskeleton] 72.5 13 0.00028 34.7 6.4 101 10-113 12-121 (1003)
257 PF08337 Plexin_cytopl: Plexin 72.3 6.4 0.00014 35.4 4.5 65 86-150 201-291 (539)
258 KOG3439 Protein conjugation fa 72.1 30 0.00065 24.0 6.7 49 88-136 46-96 (116)
259 TIGR03636 L23_arch archaeal ri 70.8 8.6 0.00019 24.9 3.7 33 10-42 14-46 (77)
260 KOG4598 Putative ubiquitin-spe 70.5 15 0.00033 34.0 6.4 97 87-185 877-991 (1203)
261 cd01777 SNX27_RA Ubiquitin dom 70.1 10 0.00022 25.2 4.0 41 154-194 3-43 (87)
262 cd01787 GRB7_RA RA (RAS-associ 69.4 19 0.00041 23.8 5.1 37 3-39 5-41 (85)
263 cd01777 SNX27_RA Ubiquitin dom 69.3 14 0.0003 24.5 4.5 41 2-42 3-43 (87)
264 PF00788 RA: Ras association ( 69.2 29 0.00062 22.6 6.5 41 155-195 5-51 (93)
265 cd01768 RA RA (Ras-associating 68.8 29 0.00063 22.5 7.2 35 162-196 12-48 (87)
266 PRK05738 rplW 50S ribosomal pr 68.7 9.6 0.00021 25.6 3.8 40 10-49 20-60 (92)
267 PF00276 Ribosomal_L23: Riboso 68.1 6.9 0.00015 26.2 3.0 41 162-202 20-61 (91)
268 PF00276 Ribosomal_L23: Riboso 67.9 7.7 0.00017 26.0 3.2 38 11-48 21-59 (91)
269 PRK14548 50S ribosomal protein 67.6 11 0.00024 24.9 3.8 33 10-42 21-53 (84)
270 PF03671 Ufm1: Ubiquitin fold 66.9 24 0.00053 22.4 5.0 57 166-222 19-76 (76)
271 cd01766 Ufm1 Urm1-like ubiquit 66.5 31 0.00068 22.0 5.6 60 167-226 20-80 (82)
272 cd01775 CYR1_RA Ubiquitin doma 66.0 22 0.00048 24.1 5.0 42 155-196 5-47 (97)
273 PF02991 Atg8: Autophagy prote 65.5 33 0.00071 23.6 6.0 57 91-147 37-97 (104)
274 smart00144 PI3K_rbd PI3-kinase 65.5 42 0.00092 23.2 7.1 74 153-226 18-106 (108)
275 PF09469 Cobl: Cordon-bleu ubi 65.4 3.1 6.7E-05 26.9 0.8 35 181-215 2-39 (79)
276 PF06234 TmoB: Toluene-4-monoo 65.1 37 0.00081 22.4 6.3 60 165-224 17-84 (85)
277 PF02991 Atg8: Autophagy prote 63.3 18 0.00038 25.0 4.3 43 16-58 38-81 (104)
278 KOG2507 Ubiquitin regulatory p 62.7 25 0.00055 30.5 5.9 77 74-150 312-393 (506)
279 PF08825 E2_bind: E2 binding d 62.1 27 0.0006 23.0 4.9 56 15-71 1-70 (84)
280 PF08783 DWNN: DWNN domain; I 62.0 13 0.00028 23.9 3.2 35 12-46 11-48 (74)
281 PRK11840 bifunctional sulfur c 61.9 37 0.0008 28.6 6.6 64 1-74 1-64 (326)
282 cd06398 PB1_Joka2 The PB1 doma 61.3 47 0.001 22.3 6.0 38 9-46 8-51 (91)
283 PRK05738 rplW 50S ribosomal pr 61.1 18 0.00039 24.3 4.0 40 162-201 20-60 (92)
284 KOG4572 Predicted DNA-binding 61.1 13 0.00029 34.9 4.3 62 85-146 3-68 (1424)
285 COG0089 RplW Ribosomal protein 60.7 13 0.00028 25.1 3.2 33 10-42 21-53 (94)
286 PF11069 DUF2870: Protein of u 60.7 17 0.00037 24.6 3.7 30 118-148 3-32 (98)
287 PF14451 Ub-Mut7C: Mut7-C ubiq 60.6 32 0.0007 22.5 5.0 53 86-147 22-75 (81)
288 cd01768 RA RA (Ras-associating 60.1 33 0.00072 22.3 5.2 35 86-120 12-48 (87)
289 smart00314 RA Ras association 59.2 36 0.00077 22.3 5.2 30 10-39 15-44 (90)
290 COG5100 NPL4 Nuclear pore prot 59.2 35 0.00076 29.5 6.1 67 156-223 4-78 (571)
291 cd01764 Urm1 Urm1-like ubuitin 58.9 14 0.00029 25.0 3.1 58 91-150 23-92 (94)
292 cd01611 GABARAP Ubiquitin doma 58.7 18 0.00039 25.3 3.8 44 15-58 45-89 (112)
293 PF09469 Cobl: Cordon-bleu ubi 58.6 13 0.00027 24.1 2.7 35 105-139 2-39 (79)
294 CHL00030 rpl23 ribosomal prote 58.5 17 0.00038 24.5 3.5 34 9-42 18-51 (93)
295 KOG2561 Adaptor protein NUB1, 58.1 11 0.00025 32.8 3.1 57 90-146 53-109 (568)
296 PF02505 MCR_D: Methyl-coenzym 57.9 75 0.0016 23.5 6.9 111 12-136 5-121 (153)
297 PF02192 PI3K_p85B: PI3-kinase 56.7 17 0.00037 23.6 3.1 23 13-35 2-24 (78)
298 PRK01777 hypothetical protein; 56.7 57 0.0012 22.0 5.9 63 1-72 4-76 (95)
299 PRK08453 fliD flagellar cappin 56.2 48 0.001 30.9 7.0 85 8-93 135-236 (673)
300 PF11834 DUF3354: Domain of un 56.1 15 0.00032 23.3 2.7 45 172-222 25-69 (69)
301 KOG2561 Adaptor protein NUB1, 55.5 3 6.5E-05 36.2 -0.7 57 166-222 53-109 (568)
302 cd01611 GABARAP Ubiquitin doma 55.3 37 0.0008 23.7 4.9 58 90-147 44-105 (112)
303 PF00788 RA: Ras association ( 54.2 58 0.0013 21.1 5.8 26 12-37 18-43 (93)
304 COG2104 ThiS Sulfur transfer p 54.2 53 0.0011 20.7 6.8 54 90-148 11-64 (68)
305 TIGR03636 L23_arch archaeal ri 54.0 18 0.00039 23.4 2.9 35 162-196 14-48 (77)
306 PF02017 CIDE-N: CIDE-N domain 53.0 38 0.00083 22.0 4.3 38 97-134 21-60 (78)
307 PF02017 CIDE-N: CIDE-N domain 52.7 47 0.001 21.6 4.7 33 21-53 21-55 (78)
308 smart00314 RA Ras association 51.6 61 0.0013 21.2 5.4 36 85-120 14-51 (90)
309 KOG0007 Splicing factor 3a, su 51.1 6.2 0.00014 33.4 0.6 50 83-132 289-339 (341)
310 cd01776 Rin1_RA Ubiquitin doma 50.6 32 0.0007 22.6 3.6 61 164-224 15-85 (87)
311 COG5100 NPL4 Nuclear pore prot 48.9 69 0.0015 27.8 6.3 70 77-147 1-78 (571)
312 PRK14548 50S ribosomal protein 48.9 25 0.00054 23.2 3.0 35 162-196 21-55 (84)
313 KOG1407 WD40 repeat protein [F 48.2 1.2E+02 0.0026 24.9 7.2 48 173-220 213-267 (313)
314 smart00143 PI3K_p85B PI3-kinas 48.0 24 0.00052 23.0 2.8 24 13-36 2-25 (78)
315 PF14847 Ras_bdg_2: Ras-bindin 47.3 93 0.002 21.5 5.8 36 79-114 3-38 (105)
316 KOG2507 Ubiquitin regulatory p 46.9 36 0.00079 29.6 4.4 77 151-227 313-394 (506)
317 KOG3439 Protein conjugation fa 46.6 43 0.00093 23.3 3.9 36 12-47 46-81 (116)
318 KOG0007 Splicing factor 3a, su 46.4 11 0.00024 31.9 1.4 49 160-208 290-339 (341)
319 smart00144 PI3K_rbd PI3-kinase 46.4 96 0.0021 21.4 7.4 62 11-72 29-104 (108)
320 PRK12280 rplW 50S ribosomal pr 46.0 34 0.00073 25.6 3.6 39 10-48 22-61 (158)
321 KOG4146 Ubiquitin-like protein 45.9 91 0.002 21.0 6.9 83 145-228 7-101 (101)
322 cd06404 PB1_aPKC PB1 domain is 45.4 57 0.0012 21.5 4.2 38 8-45 7-45 (83)
323 COG0089 RplW Ribosomal protein 45.3 37 0.00081 22.9 3.5 39 161-199 20-59 (94)
324 PF06622 SepQ: SepQ protein; 45.2 95 0.0021 24.9 6.1 33 95-127 139-171 (305)
325 cd01612 APG12_C Ubiquitin-like 45.1 70 0.0015 21.2 4.8 58 89-146 18-79 (87)
326 cd01612 APG12_C Ubiquitin-like 44.9 56 0.0012 21.7 4.3 33 15-47 20-52 (87)
327 CHL00030 rpl23 ribosomal prote 44.7 37 0.0008 22.9 3.4 38 162-199 19-57 (93)
328 PF03671 Ufm1: Ubiquitin fold 42.5 90 0.0019 19.9 5.2 57 89-145 18-75 (76)
329 smart00266 CAD Domains present 42.5 61 0.0013 20.8 4.0 38 97-134 19-58 (74)
330 KOG4147 Uncharacterized conser 42.4 21 0.00045 24.7 1.9 19 52-70 93-111 (127)
331 PF14847 Ras_bdg_2: Ras-bindin 41.0 72 0.0016 22.0 4.5 36 3-38 3-38 (105)
332 PF08756 YfkB: YfkB-like domai 39.4 46 0.001 24.2 3.4 82 20-103 12-100 (153)
333 TIGR03028 EpsE polysaccharide 39.1 2E+02 0.0043 22.9 12.1 140 76-223 78-236 (239)
334 cd06397 PB1_UP1 Uncharacterize 38.2 1.1E+02 0.0025 19.9 4.9 39 7-45 6-44 (82)
335 PF00794 PI3K_rbd: PI3-kinase 37.7 1.3E+02 0.0028 20.4 6.4 72 153-224 17-102 (106)
336 PF11816 DUF3337: Domain of un 37.3 96 0.0021 26.2 5.6 62 166-227 251-330 (331)
337 cd06539 CIDE_N_A CIDE_N domain 37.3 1E+02 0.0023 20.0 4.4 45 97-143 21-67 (78)
338 PTZ00191 60S ribosomal protein 36.6 60 0.0013 23.9 3.7 32 10-41 82-113 (145)
339 PF00794 PI3K_rbd: PI3-kinase 36.5 1.4E+02 0.003 20.3 6.7 58 3-60 19-85 (106)
340 cd01615 CIDE_N CIDE_N domain, 36.2 81 0.0018 20.5 3.9 38 97-134 21-60 (78)
341 KOG1364 Predicted ubiquitin re 35.8 63 0.0014 27.4 4.1 65 78-142 279-349 (356)
342 cd01766 Ufm1 Urm1-like ubiquit 33.9 1.3E+02 0.0028 19.3 5.3 60 90-149 19-79 (82)
343 cd01666 TGS_DRG_C TGS_DRG_C: 32.0 1E+02 0.0022 19.8 3.8 34 1-34 2-38 (75)
344 KOG2660 Locus-specific chromos 31.9 33 0.00071 28.7 1.9 46 165-210 166-213 (331)
345 TIGR03260 met_CoM_red_D methyl 31.9 2.1E+02 0.0046 21.1 6.8 112 12-137 4-120 (150)
346 PF04023 FeoA: FeoA domain; I 31.7 1.2E+02 0.0026 18.8 4.2 37 130-167 26-62 (74)
347 cd06536 CIDE_N_ICAD CIDE_N dom 31.1 1.1E+02 0.0023 20.0 3.8 39 97-135 21-63 (80)
348 PRK12280 rplW 50S ribosomal pr 30.0 81 0.0017 23.6 3.5 38 162-199 22-60 (158)
349 KOG1364 Predicted ubiquitin re 29.8 48 0.001 28.0 2.5 65 154-218 279-349 (356)
350 PF08299 Bac_DnaA_C: Bacterial 29.7 23 0.00051 22.3 0.6 18 22-39 1-18 (70)
351 PRK08453 fliD flagellar cappin 29.6 1.7E+02 0.0037 27.4 6.2 86 84-169 135-236 (673)
352 PF02824 TGS: TGS domain; Int 29.2 1.1E+02 0.0024 18.4 3.6 50 3-56 1-50 (60)
353 cd05484 retropepsin_like_LTR_2 28.0 56 0.0012 21.4 2.3 43 9-51 8-54 (91)
354 cd06537 CIDE_N_B CIDE_N domain 27.8 1.5E+02 0.0032 19.4 4.0 45 97-143 21-66 (81)
355 cd02413 40S_S3_KH K homology R 27.7 1.8E+02 0.0039 18.9 4.7 28 18-45 47-74 (81)
356 KOG3391 Transcriptional co-rep 27.6 53 0.0012 23.8 2.1 27 124-150 112-138 (151)
357 KOG3391 Transcriptional co-rep 27.2 70 0.0015 23.2 2.6 27 200-226 112-138 (151)
358 cd05736 Ig2_Follistatin_like S 26.9 1.3E+02 0.0029 18.4 3.8 20 184-203 6-25 (76)
359 PF07933 DUF1681: Protein of u 26.6 2.8E+02 0.006 20.8 6.2 93 54-147 64-158 (160)
360 PF09269 DUF1967: Domain of un 25.4 41 0.00089 21.2 1.1 17 205-221 46-62 (69)
361 COG0299 PurN Folate-dependent 25.3 1.7E+02 0.0038 22.7 4.7 43 63-111 132-174 (200)
362 PF10787 YfmQ: Uncharacterised 24.8 2.8E+02 0.0061 20.3 6.1 91 91-181 19-123 (149)
363 smart00760 Bac_DnaA_C Bacteria 24.2 43 0.00094 20.2 1.0 19 22-40 1-19 (60)
364 cd01782 AF6_RA_repeat1 Ubiquit 23.8 2.6E+02 0.0056 19.5 5.9 37 1-37 24-62 (112)
365 PF13180 PDZ_2: PDZ domain; PD 23.6 2E+02 0.0044 18.1 5.0 41 107-147 27-69 (82)
366 TIGR03595 Obg_CgtA_exten Obg f 23.5 52 0.0011 20.7 1.3 18 205-222 46-63 (69)
367 KOG3483 Uncharacterized conser 23.4 2.1E+02 0.0046 18.4 4.6 62 167-228 31-93 (94)
368 PF04126 Cyclophil_like: Cyclo 23.4 76 0.0017 22.4 2.3 29 1-30 1-29 (120)
369 cd06538 CIDE_N_FSP27 CIDE_N do 23.2 1.9E+02 0.0042 18.8 3.9 38 97-134 21-59 (79)
370 PF07971 Glyco_hydro_92: Glyco 22.9 1.3E+02 0.0028 27.1 4.2 58 2-73 443-500 (502)
371 PLN02593 adrenodoxin-like ferr 22.3 1.9E+02 0.004 20.3 4.1 34 1-38 1-34 (117)
372 TIGR03028 EpsE polysaccharide 22.3 4E+02 0.0087 21.1 14.1 136 59-222 2-160 (239)
373 PTZ00490 Ferredoxin superfamil 22.1 1.5E+02 0.0033 21.7 3.7 31 73-103 32-62 (143)
374 PF01191 RNA_pol_Rpb5_C: RNA p 22.1 1.7E+02 0.0036 18.8 3.4 46 175-226 17-62 (74)
375 PTZ00191 60S ribosomal protein 21.7 1.1E+02 0.0023 22.5 2.8 35 162-196 82-116 (145)
376 PRK09555 feoA ferrous iron tra 21.7 1.1E+02 0.0023 19.6 2.5 23 206-228 24-46 (74)
377 PF07971 Glyco_hydro_92: Glyco 21.3 1.6E+02 0.0034 26.6 4.3 77 57-148 423-499 (502)
378 PRK05883 acyl carrier protein; 21.2 23 0.00049 23.7 -0.7 77 18-110 11-88 (91)
379 cd06405 PB1_Mekk2_3 The PB1 do 20.9 2.5E+02 0.0054 18.2 4.6 42 2-47 2-43 (79)
380 PF03931 Skp1_POZ: Skp1 family 20.8 88 0.0019 18.9 2.0 32 1-32 1-32 (62)
381 PRK09570 rpoH DNA-directed RNA 20.3 1.5E+02 0.0032 19.4 2.9 47 174-226 19-65 (79)
382 cd05762 Ig8_MLCK Eighth immuno 20.1 1.9E+02 0.0041 19.1 3.7 19 187-205 26-44 (98)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.86 E-value=3.5e-21 Score=133.10 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.9
Q ss_pred hhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC
Q 026940 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i 213 (230)
-+++.+-+++++.+++...|.|+|+...|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 026940 214 QKESTLHLVLRLRGG 228 (230)
Q Consensus 214 ~~~~~i~l~~~~~gg 228 (230)
++|++|+++++++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999998
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=4.9e-20 Score=127.39 Aligned_cols=97 Identities=43% Similarity=0.627 Sum_probs=90.3
Q ss_pred ccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhh
Q 026940 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~ 135 (230)
.-.+++.+-+++++.+++.+.|+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence 34456677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEeecc
Q 026940 136 NIQKESTLHLVLRLRGG 152 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~ 152 (230)
+|.++++|++.+++.+|
T Consensus 87 ~I~~~stL~l~~~l~GG 103 (103)
T cd01802 87 NISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999999999887654
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.82 E-value=4.3e-20 Score=120.90 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.9e-19 Score=117.78 Aligned_cols=74 Identities=41% Similarity=0.621 Sum_probs=69.9
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+. ++++++++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++++++||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4677876 4788999999999999999999999999999999999999999999999999999999999999998
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.79 E-value=3.2e-19 Score=117.55 Aligned_cols=74 Identities=49% Similarity=0.785 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.79 E-value=3.3e-19 Score=116.68 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=69.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+||+. +++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++|+.+++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 78999999999999999999999999999999999999999999999999999999999988643
No 7
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.79 E-value=4.2e-19 Score=116.16 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.6
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|+|++..|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++..+++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999987
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.78 E-value=6e-19 Score=116.21 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|.|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999997
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.78 E-value=4.5e-19 Score=116.70 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.2
Q ss_pred CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+. +.++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 899999999997 7895 89999999999999999999999999999999999999999999999999999988753
No 10
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=6.7e-19 Score=114.10 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|+|+|++..|+.+.+++++++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++||+.+++++||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.78 E-value=1.4e-18 Score=114.54 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.6
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|.|+..+|+++.++++++.||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++.+++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.77 E-value=1.5e-18 Score=114.36 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.6
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++||+++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=1.6e-18 Score=113.39 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999874
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.76 E-value=2.3e-18 Score=113.56 Aligned_cols=76 Identities=25% Similarity=0.467 Sum_probs=73.2
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|+|+|+...|+.+++++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||++|++|+++..++||.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 78999999999999999999999999999999999999999999999999998 99999999999999999999984
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.76 E-value=2.4e-18 Score=113.39 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 16
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=3.2e-18 Score=112.74 Aligned_cols=74 Identities=54% Similarity=0.931 Sum_probs=71.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|++.+++++++.++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998754
No 17
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.76 E-value=3e-18 Score=111.06 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.0
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
|.|.|++..|+.+.+++++++||++||++|++..|+|+++|||+|.|+.|+|+++|++|||++|++|+|..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 67889999999999999999999999999999999999999999999999999999999999999999975
No 18
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.75 E-value=3.3e-18 Score=112.80 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=70.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++..|+.+++++++++||++||++|++..|+|+++|+|.|.|+.|+|+ +|++||+.+++++++...+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~ 75 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEA 75 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence 89999999999999999999999999999999999999999999999999998 999999999999999887643
No 19
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=2.6e-18 Score=112.36 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=69.3
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|||+++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++||+.+++++++.++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999988754
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.74 E-value=8.1e-18 Score=111.09 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999987654
No 21
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.74 E-value=7.8e-18 Score=109.70 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|+|+|+..+|+.+++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 22
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.74 E-value=5.5e-18 Score=109.13 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.6
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.|+..+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 23
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1.1e-17 Score=110.02 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=70.3
Q ss_pred eeEEEEeccCce-eEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 153 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~-~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
|.|+|++.+|++ ++++ +++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 678999999997 6885 89999999999999999999999999999999999999999999999999999998753
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.73 E-value=8.7e-18 Score=108.75 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|+|++..|+++.+++++++||++||++|++..|+|+.+|+|+|+|+.|+|+.+|++||+.+++++|++.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999998753
No 25
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.72 E-value=2.9e-17 Score=106.10 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.7
Q ss_pred EeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 158 ~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
++.+|+.+++++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999999998865
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.72 E-value=1.7e-17 Score=107.34 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.8
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|+|+..+|+++++++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 4678889999999999999999999999999999999999999999999999999999999999999865
No 27
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.71 E-value=4.7e-17 Score=107.42 Aligned_cols=74 Identities=38% Similarity=0.692 Sum_probs=70.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCC--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
|.|+|++.+|+.+.+++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999 99999999999999999999999999999999988753
No 28
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=2.5e-17 Score=109.26 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE--EeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l--~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+| .++|+.|.|+.+|++||+.+++++++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 788999999999999999999999998763
No 29
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-17 Score=99.41 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.|.|+++.|+.+.++++|.++|..+|++|+.+.||||.+|+|.|.|+++.|+.|-++|++..||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999974
No 30
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.70 E-value=3.1e-17 Score=107.74 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=67.3
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.+|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++++++||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999984
No 31
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.4e-17 Score=104.90 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.4
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+|+..+|+++.+++++++||+++|++|++..|+|++.|+|+|+|+.|+|+.+|.+|+++++++||+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999875
No 32
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=6.6e-17 Score=104.40 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.3
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+.+|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+.++++|++..++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57889999999999999999999999999999999999999999999999999999999999998765
No 33
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.69 E-value=8.3e-17 Score=104.83 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=68.7
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|.|+|+..+|+.+++++++++||.+||++|++.+|+|++.|+|.|+|+.|+|+.+|++||+++|++|+++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999998764
No 34
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=6.3e-17 Score=107.36 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.9
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEE--EEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L--~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
|.|+|+..+|+.+.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++||+++|++|+++++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 789999999999999999999999999883
No 35
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=1.2e-16 Score=103.65 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++.+|+ +.+++++++||++||++|++..|+|+.+|+|.|+|+.|.|+.+|++||+.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999764
No 36
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.4e-18 Score=113.05 Aligned_cols=76 Identities=97% Similarity=1.301 Sum_probs=73.3
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.++++...|++..+++++++||..+|+.|....|+|+++|+|+|+|+.|+|+.||++||++.-|||+++.|++||.
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 5778889999999999999999999999999999999999999999999999999999999999999999999993
No 37
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.67 E-value=1.2e-16 Score=103.43 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.2
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeee
Q 026940 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~ 70 (230)
++|++. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++||+.+++.+++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 899999999999999999999999999999999999999999987 68999999999999874
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.67 E-value=1.9e-16 Score=102.74 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=65.9
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
+.|++++.+|+ ..+++++++||.+||++|++..|+|+++|+|.|+|+.|+|+.+|++||+++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 35788888886 589999999999999999999999999999999999999999999999999999999875
No 39
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.5e-17 Score=110.93 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.+|++.+.|++.+++++|++||..+|.+|++..|+||++|+|.|+|+.|+|..|+++||+...+++|+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887433
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.66 E-value=5e-16 Score=104.59 Aligned_cols=78 Identities=18% Similarity=0.446 Sum_probs=74.9
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|.|+..+|+...++|.+++|+..||++++++.|+|+++++|+|+|+.|+++.|+.+||+++|++|+++++++||
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 447888999999999999999999999999999999999999999999999999999999999999999999999998
No 41
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.65 E-value=3.5e-16 Score=101.57 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|+|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+|+++++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999998763
No 42
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8.8e-17 Score=115.32 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|||+++.|++.++++.+++||..+|.+|++..||||++|+|+|.|++|+|..+|++|+|...+++++++++.++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987543
No 43
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=4.7e-16 Score=102.12 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=64.5
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999999999999999987643
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.64 E-value=6.2e-16 Score=100.68 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.3
Q ss_pred eeEEEEeccCceeE--EEeeccccHHHHHHHhccccC--CCCCceEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~--i~v~~~~tV~~lK~~i~~~~~--~~~~~q~L~~~g~~L~d~~tL~~~~--i~~~~~i~l~~ 223 (230)
+.++|++.+++++. +++++++||.+||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.+|.+|||++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 67899999999855 445899999999999999875 4579999999999999999999997 99999999986
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=5.6e-16 Score=100.32 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=62.9
Q ss_pred EEEEec-cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 026940 155 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 222 (230)
Q Consensus 155 i~v~~~-~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 222 (230)
++|+.. +|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 356777 889999999999999999999999999999999999999999886 68999999999999874
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.63 E-value=8e-16 Score=100.16 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=63.5
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE---cCeecCCCCcccccCCCCCCEEEEE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
.|.|+ ++|+.+++++++++||++||++|++.+|+|+++|+|+| .|+.++|+.+|++|+|++|+.|+++
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 46666 78899999999999999999999999999999999996 8999999999999999999999886
No 47
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.7e-16 Score=112.11 Aligned_cols=77 Identities=95% Similarity=1.310 Sum_probs=74.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|+...+++...++.+++||..+|+.|++..|||+++|||+|.|+.|+|..+|+||+|+..++|+++++++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 46888989999999999999999999999999999999999999999999999999999999999999999999995
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.62 E-value=1.3e-15 Score=98.81 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=65.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
++|.|+.. |+.+++++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++||+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46788865 88999999999999999999999999999999999999999999999999999999998863
No 49
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.61 E-value=2e-15 Score=98.24 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe---ccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~---~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.|.|+. +|++|++++++++||++||++|++.+|+||++|+|++ .|+.+.|+.+|++|++.+++.+++.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6788876 6899999999999999999999999999999999996 8999999999999999999998875
No 50
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.61 E-value=1.4e-15 Score=98.96 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=62.8
Q ss_pred CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCccccccc--cccccceeee
Q 026940 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~--i~~~~~i~l~ 70 (230)
|.++||+.+|+. |.+++++++||++||++|+...+ .|+++|+|+|.|+.|.|+.||++|+ +.++.++||+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 578999999998 55555899999999999999885 4579999999999999999999997 9999999986
No 51
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-15 Score=90.98 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|.|.++++.|+.+.++++++++|..+|++++++.||||.+|+|+|.|+.+.|+.+-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999873
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.56 E-value=9.1e-15 Score=92.80 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccccc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~ 65 (230)
|+|+|+..+ +.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 799999998 7999999999999999999999999999999999999999999999999998874
No 53
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.55 E-value=3.6e-14 Score=95.55 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=74.5
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+..+|+.+.+++.+++|+..||.+++++.|+|++.|+|+|+|+.|+++.|+.+|++.+|++|++.++..+|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999887664
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.53 E-value=1.6e-14 Score=94.11 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.3
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCccccccccc-cccceeeee
Q 026940 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~tl~~~~i~-~~~~i~l~~ 71 (230)
...|.++.+++++++||++||++|+..+|+||++|+| |+|+.|. |+.+|++||+. +|+++++.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3468999999999999999999999999999999999 9998885 66999999998 889998864
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.52 E-value=3.4e-14 Score=92.57 Aligned_cols=66 Identities=29% Similarity=0.346 Sum_probs=59.6
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec-CCCCcccccCCC-CCCEEEEEE
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L-~d~~tL~~~~i~-~~~~i~l~~ 223 (230)
=+...|.++.+++++++||++||++|++++|+|+++|+| |+|+.| +|+.+|++||++ +|+++++.+
T Consensus 7 ~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 7 DAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 344568899999999999999999999999999999999 999888 477999999998 889999865
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.49 E-value=6.8e-14 Score=88.71 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=59.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 217 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~ 217 (230)
|.|+|+..+ +.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++||+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 467888877 7899999999999999999999999999999999999999999999999999985
No 57
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.48 E-value=4.1e-14 Score=90.81 Aligned_cols=54 Identities=31% Similarity=0.553 Sum_probs=49.4
Q ss_pred ccccHHHHHHHhcccc--CCC-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 171 ~~~tV~~lK~~i~~~~--~~~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|++||++|||++|++|+++.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4789999999999996 574 89999999999999999999999999999999863
No 58
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.1e-13 Score=116.39 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+||++.|++|.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|++++.|++.+..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999999 99999999999999999999999999999998887754
No 59
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.45 E-value=1.3e-13 Score=91.47 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=57.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeee
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~ 73 (230)
..+++|++++||.+||.+|.+.+++||.+|+|.++|+.|.|+ +||++||+.++++++|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 567889999999999999999999999999999999998865 89999999999999998753
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.2e-13 Score=113.49 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=69.5
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccC---CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~---~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
|+|+|++..|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 67999999999999999999999999999999998 99999999999999999999999999999999988764
No 61
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.39 E-value=5.6e-13 Score=112.47 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.8
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
.+.|+|++.++ ++.+.|..+.||.+||+.|..+++.++++++|+|.|++|+|+.||..|||+||.||||++|..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36788888777 899999999999999999999999999999999999999999999999999999999999965
No 62
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=8.8e-13 Score=84.68 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHhHh--CCC-CCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940 95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.++||++||++|+++. +++ +++|+|+|.|+.|+|+.+|++|+|++|++|+++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4679999999999996 465 8899999999999999999999999999999874
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.37 E-value=1.8e-12 Score=83.38 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.2
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|+..+|+.+.+++++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|++.+++.+++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999988753
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.36 E-value=1.7e-12 Score=83.43 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.4
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
|+..+|+.+.+.+++++||.+||++|++.+|+|++.|+|.|+|+.|+|+.+|.+|++.+|++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 4556788999999999999999999999999999999999999999999999999999999998864
No 65
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.36 E-value=1.3e-12 Score=89.47 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=65.5
Q ss_pred CceeeEEEeccCeeE-eeecCCCChHHHHHHHHHhHh-----CCC--CCCcEEEecCcccCCCccHhhhc------cccC
Q 026940 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~-~i~v~~~~tV~~lK~~i~~~~-----~i~--~~~q~L~~~g~~L~d~~tL~~~~------i~~~ 140 (230)
+.+.|.++..+|..+ +..+++++||++||++|++.+ ++| ++.|+|+|.|+.|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 346788888999655 788999999999999999666 344 99999999999999999999999 6666
Q ss_pred CceEEEEEeec
Q 026940 141 STLHLVLRLRG 151 (230)
Q Consensus 141 ~~i~l~~~~~~ 151 (230)
.++|++++++.
T Consensus 83 ~TmHvvlr~~~ 93 (113)
T cd01814 83 ITMHVVVQPPL 93 (113)
T ss_pred eEEEEEecCCC
Confidence 88888887653
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.34 E-value=5.4e-12 Score=81.99 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.0
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
|+|.|+..+|+.+.+.+.+++++..|++.++++.|+|+ +.++|.|+|+.|+++.|+++||+++|++|.+.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57889999999999999999999999999999999999 999999999999999999999999999999864
No 67
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.34 E-value=2.4e-12 Score=85.58 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.4
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec-CCCCcccccCCCCCCEEEEEEEe
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L-~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
...++|++++||.+||..|...+++||..|+|+++|+.| +|++||++|||.+++.|++.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 457889999999999999999999999999999999988 57889999999999999998863
No 68
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.32 E-value=1.5e-12 Score=89.21 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=63.2
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceEEEeccccccCCccccccc------cccccce
Q 026940 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~l~~~g~~l~d~~tl~~~~------i~~~~~i 67 (230)
.|.++..+|. .=+..+++++||++||++|+ .+.|+| +++|+|+|+|+.|+|++||++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4677777884 45788999999999999999 555666 99999999999999999999999 6777899
Q ss_pred eeeeeec
Q 026940 68 HLVLRLR 74 (230)
Q Consensus 68 ~l~~~~~ 74 (230)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9998874
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.28 E-value=1.7e-11 Score=79.65 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+|+++..+|+.+.+.+.+++++..|++.++++.++|+ +.++|+|+|+.|+++.|++++|+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57889999999999999999999999999999999999 999999999999999999999999999998863
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.23 E-value=1.2e-11 Score=104.60 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
++|+||+.++ .+.+.|..+.||.+||++|...+++|+++|+|+|.|+.|.|+.||..|||.+|.+|||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 4799999976 999999999999999999999999999999999999999999999999999999999998753
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.21 E-value=2.4e-11 Score=97.78 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+||++.|..|++++.|++||.++|.+|+...| .|.++|.|+|+|+.|.|+.++.+|++..+..+.+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999998877766543
No 72
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.19 E-value=8.9e-11 Score=78.33 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.6
Q ss_pred EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc-----cc-cCCccccccccccccceeeee
Q 026940 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~-----~l-~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.|+|++.. ......++++++||.+||++++..+|+||+.|+|. +.|+ .| +|..+|++||+.+|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666643 23445569999999999999999999999999995 6776 35 567899999999999999874
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.15 E-value=2e-10 Score=76.63 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=56.7
Q ss_pred EEEEecc-CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026940 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~-~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~-----~L-~d~~tL~~~~i~~~~~i~l~~ 223 (230)
|.|.... ....+..++++.||.+||++++..+|+|++.|+|. |.|. .| +|.++|.+||+++|++|+++-
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4444332 33455669999999999999999999999999996 7776 45 688899999999999999863
No 74
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.13 E-value=1.2e-10 Score=93.83 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||++.++.|.+++.+++||.++|.+|....| +|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999998887665
No 75
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.11 E-value=2.1e-10 Score=78.29 Aligned_cols=72 Identities=31% Similarity=0.464 Sum_probs=61.8
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccc-------ccceeeeee
Q 026940 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~-------~~~i~l~~~ 72 (230)
|.+|+.....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+.+ ..++.|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 77888887655 7889999999999999999999999999999997778899999999999943 445555544
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.10 E-value=3.5e-10 Score=77.22 Aligned_cols=71 Identities=30% Similarity=0.419 Sum_probs=62.9
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGDF 230 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-------~~~~~i~l~~~~~gg~~ 230 (230)
++..++.+.+.++.||.+||++|+.....||+.|+|+..+.+|+|++||++||+ +.-+++-|.+|...|.|
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 445578889999999999999999999999999999977788999999999999 67889999999776754
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.09 E-value=5.2e-10 Score=75.31 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=57.3
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec----c---c-cccCCccccccccccccceeeee
Q 026940 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---K-QLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~----g---~-~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.|+|.+..- ......+++++||.+||.+|+..+|+||+.|+|.+. + . ..+|..+|++||+.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567777654 488999999999999999999999999999999975 1 2 23567999999999999998864
No 78
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.07 E-value=6.4e-10 Score=74.87 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=55.4
Q ss_pred eEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEc----C---eec-CCCCcccccCCCCCCEEEEE
Q 026940 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~----g---~~L-~d~~tL~~~~i~~~~~i~l~ 222 (230)
.|.|..... ...+..++++.||++||.+++..+|+|++.|+|.+. + ..+ +|..+|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 455555444 478899999999999999999999999999999854 1 234 57899999999999999875
No 79
>PLN02560 enoyl-CoA reductase
Probab=99.00 E-value=1e-09 Score=90.30 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.6
Q ss_pred CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceEEEec---c----ccccCCccccccccccccceee
Q 026940 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~l~~~---g----~~l~d~~tl~~~~i~~~~~i~l 69 (230)
|+|.|+..+|+.+ ++++++++||+|||.+|++..++ ++++|+|.+. | ..|+|+++|+++|+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999989887 79999999999999999999987 8999999973 3 3788999999999999998776
Q ss_pred e
Q 026940 70 V 70 (230)
Q Consensus 70 ~ 70 (230)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 80
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.95 E-value=4.6e-09 Score=65.97 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=64.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec---c--ccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~---g--~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
++|+|+-.++....+.|+|..+|.++|++|....|++- .|+|.|+ | +.|.+..+|++|||-.+..|.++...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 57999999999999999999999999999999999998 8999996 2 56888999999999999888887554
No 81
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=8.3e-09 Score=66.62 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=67.7
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
+++....|+.+.+.+.+..+|..+|.+|+...|+|++.|++.+.|+.|.|+.++.+|+|..++++++..++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 3455678999999999999999999999999999999999999999999999999999999999999998764
No 82
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.94 E-value=5.6e-09 Score=67.46 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=67.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
+++....|+.+.+++.+..+|..+|.+|+...|+|+.+|++.+.|+.|.|..++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 567788999999999999999999999999999999999999999999999999999999999999887653
No 83
>PLN02560 enoyl-CoA reductase
Probab=98.90 E-value=3.5e-09 Score=87.19 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=59.8
Q ss_pred eeEEEEeccCcee---EEEeeccccHHHHHHHhccccCC-CCCceEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~---~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~~~---g----~~L~d~~tL~~~~i~~~~~i~l 221 (230)
|.|.|+..+|+.+ ++++++++||++||++|+++.+. ++++|||.+. | ..|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 4677887778876 79999999999999999999986 8999999973 3 4788999999999999999865
No 84
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.83 E-value=1.5e-08 Score=70.85 Aligned_cols=74 Identities=30% Similarity=0.498 Sum_probs=55.8
Q ss_pred ceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhC-------CCCCCcEEEecCcccCCCccHhhhccccCC------
Q 026940 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (230)
Q Consensus 76 ~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~------ 141 (230)
.+.+.++..+|. ..++.+++++||++||+.|...+. ..++..+|+|.|+.|+|+.+|+++.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 356777778998 789999999999999999998763 235678999999999999999999988766
Q ss_pred ceEEEEEe
Q 026940 142 TLHLVLRL 149 (230)
Q Consensus 142 ~i~l~~~~ 149 (230)
++|++++.
T Consensus 82 vmHlvvrp 89 (111)
T PF13881_consen 82 VMHLVVRP 89 (111)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecC
Confidence 45666554
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5e-09 Score=95.43 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
.|.||+++.++.++.|+..+||.++|+.|....+|+.+.||++|+|+.|.|++++.+|++ +|-+|||+.++++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999988654
No 86
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.78 E-value=1.5e-08 Score=66.57 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.9
Q ss_pred eccccHHHHHHHhccccC-CCCCceEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 026940 170 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 170 ~~~~tV~~lK~~i~~~~~-~~~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
++++||.+||..|++..+ .++++|+|. +.|+.|.|+.+|.+||+++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999999886 588999986 7899999999999999999999876
No 87
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.74 E-value=3.3e-08 Score=65.05 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=44.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec---cccc--cCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~---g~~l--~d~~tl~~~~i~~~~~i~l~ 70 (230)
|-|.|++.+ ..+.+++++++|+.+|+++|++.+++|++.|.|+.+ ...+ .+..+|+++||+.|+.+++.
T Consensus 5 milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 567888876 577789999999999999999999999999998764 2344 46789999999999998874
No 88
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.73 E-value=3.3e-08 Score=64.87 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=53.1
Q ss_pred EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceEEE--eccccccCCccccccccccccceee
Q 026940 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-i~~~~q~l~--~~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
.|.++..+ .....+++ ++++||.+||..|+...+ +++++|+|. +.|+.|.|+.+|+++|+.+|+++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 34555554 23322444 588999999999999976 578999997 5789999999999999999998775
No 89
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.67 E-value=3e-07 Score=64.25 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=52.8
Q ss_pred eEEEEeccCc-eeEEEeeccccHHHHHHHhccccC-------CCCCceEEEEcCeecCCCCcccccCCCCCC------EE
Q 026940 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 219 (230)
Q Consensus 154 ~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~-------~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~i 219 (230)
.+.....+|. ..++.+++++||.+||+.|...+. ..++.+||+|.|+.|+|+.||+++.+..|+ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3444455777 788999999999999999998773 235679999999999999999999998776 46
Q ss_pred EEEEEe
Q 026940 220 HLVLRL 225 (230)
Q Consensus 220 ~l~~~~ 225 (230)
|++++.
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 666653
No 90
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.5e-08 Score=90.08 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.2
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
.|+||+++.++.++.+...+||.+||..|.++..|+.+.||++|.|+.|.|++++++|++ +|-+||++-|.+.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999886644
No 91
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.56 E-value=1.3e-07 Score=62.16 Aligned_cols=70 Identities=29% Similarity=0.430 Sum_probs=42.1
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~L--~d~~tL~~~~i~~~~~i~l~ 222 (230)
.|-|.|++.+| .+.+++++++|+.+|+++|++..++|.+.+.|..+. ..+ .++++|+++|++.||.|++.
T Consensus 4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 45566776554 557789999999999999999999999999886322 345 46889999999999999874
No 92
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.4e-07 Score=59.43 Aligned_cols=78 Identities=17% Similarity=0.411 Sum_probs=71.7
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
-+++.|+..++....+.+..+++...|+...+++.|++.+..|+.|+|+.+.+..|-.+.+.++|+.|.++..+.||.
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 355666666778889999999999999999999999999999999999999999999999999999999999999885
No 93
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.8e-08 Score=59.93 Aligned_cols=69 Identities=26% Similarity=0.390 Sum_probs=61.3
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
+.++.+-|+...+.+++++||+++|+.|+..+|..++...|.-.+..++|+-+|++|.|.+|..+.+..
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 445556689999999999999999999999999999999888667788999999999999999888764
No 94
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.46 E-value=1.3e-06 Score=55.07 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=60.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC-----cccCCCccHhhhccccCCceEEEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
++|+|+..++....+.|+|..+|..+|++|....+++- .|+|.|.. +.|.+..+|++|||-.+..|.++-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 46888888899999999999999999999999999875 89998732 4578999999999998777766544
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.46 E-value=7.4e-07 Score=55.19 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=58.4
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
.++....+.+.++.|+.++|+.++.++|.+++.+.|.++|..+++...+.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3677888889999999999999999999999999999999999988888899999999998764
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.45 E-value=7.2e-07 Score=55.23 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=59.4
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
+..+|....+.+.+++|++++|+++...+|+++..|.|+++|..+.+...+..+++.+++.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 344688999999999999999999999999999999999999999988888899999999988753
No 97
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.39 E-value=5.6e-07 Score=59.39 Aligned_cols=65 Identities=28% Similarity=0.432 Sum_probs=55.3
Q ss_pred CEEEEEccCC-cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-cc-ccccCCcccccccccccc
Q 026940 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g-~~l~d~~tl~~~~i~~~~ 65 (230)
|.+|++.... .++.++..++.||.+||++++....-|+..|+|+. .. +.|+|.+||+++|..+..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ 68 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT 68 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence 5677776654 46788999999999999999999999999999997 43 789999999999986543
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.7e-06 Score=54.62 Aligned_cols=78 Identities=17% Similarity=0.427 Sum_probs=70.4
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
..+.+.|...++....+.+..+++...|....+++.|++.+..+++|+|+.+.+..|..+.++.+|+.|.++....+|
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 446677777777888999999999999999999999999999999999999999999999999999999988776655
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.8e-06 Score=69.53 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=64.8
Q ss_pred CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee-eee
Q 026940 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~-~~~ 73 (230)
|.++|+.. ....++++|+.+.+|.+||+.|..+.|+|+.+-+++|.|++|.++.+++.+.+...+.+|+. ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 67788765 23578999999999999999999999999999999999999999999999999999988875 454
No 100
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.4e-06 Score=72.43 Aligned_cols=70 Identities=24% Similarity=0.437 Sum_probs=63.7
Q ss_pred eEEEEeccCceeEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 154 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.|.|+ +.|+.|+++ ++.++|+..||+++...+|+||++|+++..|+.+.|+-.+...+|++|.+++|+-.
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 35555 788999988 99999999999999999999999999999999999988899999999999988754
No 101
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.2e-07 Score=55.00 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=60.5
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+.++..-|+...+.+++++||+++|..|+.++|-.++...|.-.+....|.-+|++|.|.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455566678999999999999999999999999999999988877788899999999999998877653
No 102
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.2e-06 Score=70.99 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=63.4
Q ss_pred EEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.| -+.|+.++++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+..+...+|+++.+++|.-..
T Consensus 6 v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred Eee-eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 344 4578999998 999999999999999999999999999999999999999999999999999996543
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.00 E-value=2e-05 Score=49.44 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.3
Q ss_pred eccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 159 ~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
..+++...+.+.+++++.++-+..++++|+.++...|.|+++.++-+.++.-.|+.+|+++.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 367889999999999999999999999999999999999999999999999999999999875
No 104
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.2e-06 Score=53.59 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=72.0
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
-+.+.|...++.+..+.+..+.|...|....+.+-|-..+..|+.|+|+..+.++|-.+++..+++.|..+...-||+.
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t 102 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT 102 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence 3556667778889999999999999999999999999999999999999999999999999999999999888888863
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.95 E-value=8.2e-06 Score=53.96 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=47.4
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-cC-eecCCCCcccccCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI 213 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g-~~L~d~~tL~~~~i 213 (230)
++..++.+..+++.||.+||.+++....-|++.|+|.. .- ..|+|.+||+++|.
T Consensus 9 R~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 9 RHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred ecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 45567889999999999999999999999999999985 33 67899999999976
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.7e-05 Score=62.88 Aligned_cols=60 Identities=32% Similarity=0.648 Sum_probs=54.4
Q ss_pred ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
..++++|+.+..|.+||+.++++.|+|+++.+++|.|++|.|+.+++.+.+.-.+.++++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 457888999999999999999999999999999999999999999998888777777665
No 107
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.85 E-value=5.1e-05 Score=49.91 Aligned_cols=68 Identities=22% Similarity=0.378 Sum_probs=48.5
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC---C---ceEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~---~---~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
.|.|...+++.+.+.++.+.+|.+|...+.+..+.+. . ...|. -+|..|+++.+|+++||.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4556655568999999999999999999988877522 2 24555 6788999999999999999999976
No 108
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.81 E-value=9.2e-05 Score=46.47 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.0
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEE
Q 026940 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
..+++.+.+.+.+++++.++-+..++++++.++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467889999999999999999999999999999999999999999999999999999998764
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.69 E-value=0.00011 Score=48.23 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=48.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc------eEEE-eccccccCCccccccccccccceee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~------q~l~-~~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
+|+|...+|+.+.+.++.+.+|++|...+.+..+.+... ..|. ..|..|+++.||+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 567766557899999999999999999999999875532 2344 4588999999999999999999876
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.62 E-value=0.00052 Score=45.33 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=59.0
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCc-eEEE--EcCeecCC--CCcccccCCCCCCEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLED--GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~L~--~~g~~L~d--~~tL~~~~i~~~~~i~l~ 222 (230)
...|.++.++|+.+.-.+..++|+.+|..-|......+... +.|+ |..+.+.+ ++||++.|+.++++|++.
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 35678888999999999999999999999998887766654 7776 67777753 379999999999999763
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.54 E-value=0.00056 Score=50.61 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=58.4
Q ss_pred eeEEEEeccC----ceeEEEeeccccHHHHHHHhccccCCCCCce-EEEE-cCeec--CCCCcccccCCCCC----CEEE
Q 026940 153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 220 (230)
Q Consensus 153 ~~i~v~~~~~----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q-~L~~-~g~~L--~d~~tL~~~~i~~~----~~i~ 220 (230)
|+|.|.+.+| .++.+.+++++||.+|+..|...++++...+ .|.. .++.+ .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 4688888888 5788889999999999999999999988874 4554 34444 45566666655444 3788
Q ss_pred EEEEecCC
Q 026940 221 LVLRLRGG 228 (230)
Q Consensus 221 l~~~~~gg 228 (230)
+..++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 112
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.48 E-value=0.00064 Score=44.74 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=57.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l 221 (230)
..|.|+.++|+.+...++.++|+.++.+-|....+.....+.|. |..+.+.+ ++||.+.|+-+++++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 46788889999999999999999999999966666666677876 67777743 57999999999998865
No 113
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.30 E-value=0.0017 Score=42.58 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=56.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l 221 (230)
..|.++.++|+...-.++.++|+.++.+-|....+-+ ..+.|+ |..+.+.+ ++||.+.|+.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4678888999999999999999999999998765433 556676 78888853 58999999999999876
No 114
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.26 E-value=0.0025 Score=41.93 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.6
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccCC---CccHhhhccccCCceEE
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l 145 (230)
+...|.|+.++|..+.-.++.++|+.+|.+-+....+.......|. |..+.+.+ +.||.+.|+.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3457888999999999999999999999999976666666677776 56677753 47999999988887754
No 115
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.25 E-value=0.0025 Score=42.01 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=56.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEE--eccccccCC--ccccccccccccceee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~--~~g~~l~d~--~tl~~~~i~~~~~i~l 69 (230)
+|-|+..+|..+.-.+.+++||.+|...|......+... -.|. |-.+.+.+. .||++.|+.+.+++++
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 578999999999999999999999999999998887764 4554 345666544 6999999999988876
No 116
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.20 E-value=0.0029 Score=41.27 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=52.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l 221 (230)
..|.++.++|+...-.++.++|+.+|.+-|.....- ...+.|. |..+.+. .+.||.+.|+.+ +.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 457888899999999999999999999999876543 5556776 6777774 488999999995 44433
No 117
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.19 E-value=0.0024 Score=47.32 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=49.5
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEec-cccc--cCCccccccccccc
Q 026940 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~-g~~l--~d~~tl~~~~i~~~ 64 (230)
|.|+|.+++| .++.+.++++.||.+|+..|....++|+..| .|++. ++.+ .++..++.+.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 7899999999 6899999999999999999999999999885 45553 4455 34455555544333
No 118
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.16 E-value=0.0022 Score=42.03 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=53.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCC-CCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~--~~g~~L-~d~~tL~~~~i~~~~~i 219 (230)
..|.|+..+|+.....++.++||.+|.+-|....+- ....+.|. |..+.+ +++.||.+.|+.+...+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 568888999999999999999999999999887643 23557776 778878 45889999999974433
No 119
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.14 E-value=0.0038 Score=39.55 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=54.0
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCC--CC---CceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~--~~---~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
+-.+..+|.++.+.++...++..|-..+.+...+ ++ +.++..-+++.|.++..|.+|||.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3445677999999999999998888877766543 22 3567778999999999999999999998864
No 120
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.12 E-value=0.0039 Score=41.01 Aligned_cols=71 Identities=17% Similarity=0.326 Sum_probs=60.3
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..|.++.++|+...-.+..++++.+|-.-+.. .|.+++.+.|+ |..+.+. -+.||.+.|+.+..++.+--|
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 46788889999999999999999999999988 47788889887 7777773 357999999999999987543
No 121
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.09 E-value=0.004 Score=41.44 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=56.8
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC--------CCCcccccCCCCCCEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~--------d~~tL~~~~i~~~~~i~l 221 (230)
..+|.++.++|+...-.+..++|+++|..-|... +..++.+.|+ |..+.+. .+.||++.|+.+..++.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 4578888899999999999999999999999643 5566788887 5557774 367999999999888866
Q ss_pred E
Q 026940 222 V 222 (230)
Q Consensus 222 ~ 222 (230)
.
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 3
No 122
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0027 Score=41.75 Aligned_cols=72 Identities=15% Similarity=0.354 Sum_probs=64.7
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.+.+.|...+|..+.+.+..+++...|-...+.+.|-..+..|++|+|+.++.++|..++++.+++.|.++.
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 466667667888999999999999999999999999999999999999999999999999999999876543
No 123
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.04 E-value=0.0011 Score=52.14 Aligned_cols=69 Identities=28% Similarity=0.406 Sum_probs=53.2
Q ss_pred CEEEEEccCCc-EEE-EEecCCCcHHHHHHHh-hhhhCCCCCceEEEe----ccccccCCccccccccccccceee
Q 026940 1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~-~~~-~~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~----~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
|.|++.+.+++ ... ...+..+|++|++.++ ++...+.+.++++.+ .|+.|-|+.+|++|+..++.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 78999998763 333 5677788999999555 555678886666554 489999999999999999977665
No 124
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.02 E-value=0.0053 Score=40.33 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=58.9
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~ 222 (230)
...|.++.++|+...-.+..++++++|-.-|... |.++..++|+ |..+.+. .+.||.+.|+.+..+|.+-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567888889999999999999999999999875 7777888887 7778773 3579999999999998764
No 125
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0011 Score=50.74 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.++.|.+.+..-+|+.++|.+++...|+.+..|+++++|..+.+...|..|++..+....+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 357788889999999999999999999999999999999999999999999999997766544
No 126
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.98 E-value=0.0052 Score=40.28 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=52.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---Cccccccccccccceee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~tl~~~~i~~~~~i~l 69 (230)
+|-|+..+|....-.++.++|+.+|.+.|....+-+. .-.|. |-.+.+.+ +.||.+.|+.+..++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~-~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGG-PFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCC-CEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999997765442 23444 44566653 47999999998887765
No 127
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.97 E-value=0.0028 Score=43.20 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=39.5
Q ss_pred EeeecC--CCChHHHHHHHHHhHhC--CCCCCcEEEecCcccCCCccHhhhccc
Q 026940 89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 89 ~~i~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~ 138 (230)
..++++ .+.||..||+.|.+..+ ..-.+++|+|+|+.|.|...|...-..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~ 67 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL 67 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence 556666 78899999999999984 334568899999999998887765433
No 128
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.94 E-value=0.0077 Score=47.36 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=55.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCC-ce--EEE--ecc---ccccCCccccccccccccceeeeeeecC-------
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQ--RLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG------- 75 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q--~l~--~~g---~~l~d~~tl~~~~i~~~~~i~l~~~~~~------- 75 (230)
..+.+.++.+.||+||.+++..+.+++.+ .+ +++ +++ +.+..+.++.+. .+...+.+-.-+.+
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35788999999999999999999999875 33 333 234 345666667665 22222322211111
Q ss_pred ---ceeeEEEe-------ccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026940 76 ---GMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 76 ---~~~v~v~~-------~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
...|.|.- ..|-.|.+.+.+++|++++|++|++++|++-
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 12333322 2467788999999999999999999999874
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.91 E-value=0.0081 Score=39.36 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=53.2
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--ecCcccCC-CccHhhhccccCCc
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~ 142 (230)
...|.|+..+|+.+.-.++.++||++|.+-|....+- ......|. |-.+.+.| +.||.+.|+.+...
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 4578899999999999999999999999999987643 23456676 66777754 77999999986443
No 130
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.82 E-value=0.009 Score=38.89 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=49.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---Ccccccccccccc
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~tl~~~~i~~~~ 65 (230)
+|-|+..+|....-.++.++||.+|.+.|.....- +..-.|. |-.+.+.+ +.||.+.|+.+..
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 57899999999999999999999999999887654 3334444 34566654 7899999999543
No 131
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.76 E-value=0.014 Score=38.85 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=55.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe--cCcccC--------CCccHhhhccccCCceE
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--------DGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~--------d~~tL~~~~i~~~~~i~ 144 (230)
+..+|.++.++|+...-.+..++|+.+|..-|.. .+..+....|+. -.+.+. .+.||++.|+.+.+++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3467889999999999999999999999999964 455667888874 346664 36799999999887775
Q ss_pred E
Q 026940 145 L 145 (230)
Q Consensus 145 l 145 (230)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 132
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.57 E-value=0.024 Score=37.28 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=56.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe--cccccc---CCccccccccccccceeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~---d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|-|+..+|....-.+...+++.+|-..|.. .|.++....|+- --+.+. .+.||.+.|+.+..++.+-.
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 5889999999999999999999999999999 577887777773 344443 34799999999998887743
No 133
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.49 E-value=0.0042 Score=48.88 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=48.2
Q ss_pred eeEEEEeccCc-eeE-EEeeccccHHHHHHHhcccc-CCCCCceEE----EEcCeecCCCCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRL----IFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~-i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L----~~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
|.|++.++++. ... ...+...|+.|+++.+..+. .+.+.++|+ .-+|+.+-|+.+|++||..+|++|++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 34556655542 223 44556789999997776655 455544433 35789999999999999999988865
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.48 E-value=0.029 Score=36.85 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=57.8
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccC---CCccHhhhccccCCceEEE
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~ 146 (230)
..+|.++.++|+...-.+..++++.+|-.-+... |.++...+|+ |-.+.+. .+.||.+.|+.+..++.+-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4578889999999999999999999999999875 7777788887 6667663 3579999999988887653
No 135
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=96.47 E-value=0.024 Score=37.71 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=46.6
Q ss_pred ceeEEEeeccccHHHHHHHhccccCCCCCceEEE-E---cC-eec-CCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AG-KQL-EDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~---~g-~~L-~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
..++..+...+||..+...+.+.+.+ ....||- + ++ ..| +.+.|+.+.|+.+|.+|.+-.|...|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 35677889999999999999999999 5556764 2 22 345 4568999999999999999999988864
No 136
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.46 E-value=0.016 Score=36.72 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=53.4
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-----CceEEEeccccccCCccccccccccccceee
Q 026940 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-----~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
-++..+|.++.++++...++..+-..+.+...+.. .+-+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34566899999999999999999999888876543 2234445688999999999999999998764
No 137
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.40 E-value=0.01 Score=40.46 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=43.6
Q ss_pred EEEEccC-CcEEEEEec--CCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCcccccccc
Q 026940 3 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 3 v~v~~~~-g~~~~~~v~--~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~i 61 (230)
+.|+..+ -.-..++|+ ...||..||+.|.+..+ ..-.+++|+++|+.|.|...|+..-.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 3444443 234677777 77899999999999984 33367788899999999888876543
No 138
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0073 Score=46.31 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=56.5
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.++.+.+.+...+|+.++|.+++...++.+..|+++++|..+-|...|..+++..|....+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 56678889999999999999999999999999999999999999999999999999765544
No 139
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=96.24 E-value=0.022 Score=35.00 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=51.7
Q ss_pred cCceeEEEeeccccHHHHHHHhcccc---CCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~---~~~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
+|+...++.+.+....-..++--+.. |-|++...|. -+|..|+-++...|||+.+|-++++.++..
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 56777777777776666655554444 4688888887 688999999999999999999999988853
No 140
>PRK06437 hypothetical protein; Provisional
Probab=96.17 E-value=0.06 Score=34.02 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=47.3
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.++...++++...||.+|-+.+ ++++....+..+|.... .++-+++||.|.++.-..||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 4566778888889999887654 78888888889999887 66678999999888776665
No 141
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.02 Score=43.90 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=50.1
Q ss_pred eEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g-----~~L-~d~~tL~~~~i~~~~~i~l~~ 223 (230)
.....+++.|+++||.+++-.+|.+++.+.|. |.| ..| +++..|..|...+|-.||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 45667789999999999999999999999987 666 355 467899999999999998764
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.92 E-value=0.043 Score=44.27 Aligned_cols=119 Identities=18% Similarity=0.369 Sum_probs=81.5
Q ss_pred EEEEEccCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc------ccccCCccccccccccccceee
Q 026940 2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g------~~l~d~~tl~~~~i~~~~~i~l 69 (230)
-||+|..+- .++ .+-|+.+++|.++-..|.+..|.|+....++|.- ..++...|+....+.+|+.|.+
T Consensus 70 LlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~f 149 (249)
T PF12436_consen 70 LLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICF 149 (249)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEE
T ss_pred EEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEE
Confidence 467777642 222 3468999999999999999999999888777752 5577889999999999999888
Q ss_pred eeeec--------------------CceeeEEEec---cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940 70 VLRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 70 ~~~~~--------------------~~~~v~v~~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
-.... ..+.|.++.. .+..|.+.++...|-.+|-++|+++.++.|...+|+
T Consensus 150 Q~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 150 QRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 76442 1266666542 345799999999999999999999999999999987
No 143
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.87 E-value=0.017 Score=37.51 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=47.9
Q ss_pred eeccccHHHHHHHhccccC-CCCCceEEEEcCeecCCCCccccc-CCCCCCEEEEEEEe
Q 026940 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (230)
Q Consensus 169 v~~~~tV~~lK~~i~~~~~-~~~~~q~L~~~g~~L~d~~tL~~~-~i~~~~~i~l~~~~ 225 (230)
|.++++|.++++.+..... .....+.|.++|..|+|...|++. |+++|+++.++.+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 4678899999999988765 456678899999999999999888 69999999988653
No 144
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.78 E-value=0.075 Score=42.84 Aligned_cols=107 Identities=17% Similarity=0.349 Sum_probs=73.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC------cccCCCccHhhhccccCCceEEEEEeec------------
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~tL~~~~i~~~~~i~l~~~~~~------------ 151 (230)
.+-|+.+++|+++-..|.+..|+|++..-++|.- ..++...++....+.+|+.|-+-.....
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 3567888999999999999999999877766643 3467789999999999998877664421
Q ss_pred --------ceeEEEEec---cCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 152 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 152 --------~~~i~v~~~---~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
.+.|..+.. .+..+.+.++..+|-.+|-+.|+++.++.|...||.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 144555542 234789999999999999999999999999999987
No 145
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=95.65 E-value=0.083 Score=41.55 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=57.3
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCC---CcEEE--ecCc---ccCCCccHhhhccccCCceEEEEEe------e--
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 150 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~tL~~~~i~~~~~i~l~~~~------~-- 150 (230)
+.+.+-++.+.||++|...++.+.+++.+ ..++. ++++ .+..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788899999999999999999998765 44544 4553 45667777776 222233332111 1
Q ss_pred --cceeEEEEec-------cCceeEEEeeccccHHHHHHHhccccCCCCC
Q 026940 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD 191 (230)
Q Consensus 151 --~~~~i~v~~~-------~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~ 191 (230)
+..-|.|... .|-.+.+.+.+..|+.++|++|++++|++..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 1233444432 2566788899999999999999999998643
No 146
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.062 Score=41.24 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=50.4
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecC-----cccC-CCccHhhhccccCCceEEEEEe
Q 026940 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.....+++.||++||.+++-.+|.+++.+.|. |.| ..|+ ++..|..|...+|-.||++-..
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 45567889999999999999999999999987 555 2454 5778999999999999887543
No 147
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.35 E-value=0.13 Score=33.39 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=51.1
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEE----cC--eecCCCCcccccCCC--CCCEEEEEEE
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVLR 224 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~----~g--~~L~d~~tL~~~~i~--~~~~i~l~~~ 224 (230)
|...+|....+++++++|+.+|=+.|+++.++.. +.+=|.+ +| .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 4567889999999999999999999999999854 4456667 22 346788999999888 4445555443
No 148
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.34 E-value=0.26 Score=31.37 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=44.0
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...+++++..|+.+|-+.+ ++++....+..||..... +.-+++||.|.++--..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 5677788889999998766 566676777789988853 5668999999888777766
No 149
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.98 E-value=0.099 Score=33.98 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=46.0
Q ss_pred eeEEEeeccccHHHHHHHhccccCC----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+++||.|.++-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3566777789999999999888642 234556668888776 44569999999998888777
No 150
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.94 E-value=0.082 Score=34.62 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.....++-.+++..||..++.+.|+.-+.-.++++...|+++++|.+.+++....+.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 4556778889999999999999999999999999987799999999999998888777653
No 151
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=94.84 E-value=0.24 Score=30.92 Aligned_cols=61 Identities=15% Similarity=0.330 Sum_probs=44.9
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.+|+.+.+ + ..|+.+|.+.+ +++++...+..++..... ....+.-+++||.|.++--..||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 35666665 3 45899998765 566666667789988763 35667789999999988887776
No 152
>PRK06437 hypothetical protein; Provisional
Probab=94.68 E-value=0.26 Score=31.11 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=47.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|.-+++..+++...++++...||.+|=+ ..|+++..-.+..+|..+. .++-+++|+++.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 4445555566778899999999999877 5689887777778998886 555677888887764
No 153
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.57 E-value=0.22 Score=32.67 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.3
Q ss_pred eEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
+...++-..++..||..++.+.++..+...+...+..|+++++|-+-|++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445677788999999999999999999998888887799999999999997777776654
No 154
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.37 E-value=0.37 Score=31.22 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=45.3
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe--c--c--ccccCCccccccccc
Q 026940 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--A--G--KQLEDGRTLADYNIQ 62 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~--~--g--~~l~d~~tl~~~~i~ 62 (230)
|..++|...++++++++|+.++=+.|.++.|+.-. .--|.+ . | .=|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 56789999999999999999999999999998753 235666 1 2 226777888888766
No 155
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.28 E-value=0.26 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++.+.+++..+.++|.++|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999997643
No 156
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.23 E-value=0.31 Score=32.44 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=43.1
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec----c-cccc-CCccccccccccccceeeeeee
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQLE-DGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~----g-~~l~-d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
..++-.++..+||+.+...+.+.+.| +..=||+-. + ..|. .+.|+.+.||.+|..|.+-.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 46788899999999999999999999 555677742 2 3354 4579999999999887776554
No 157
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.18 E-value=0.23 Score=32.42 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.4
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCe
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~ 200 (230)
++.+.+++..+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8889999999999999999999999999999999763
No 158
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.09 E-value=0.12 Score=33.50 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=44.6
Q ss_pred cCCCChHHHHHHHHHhHhC-CCCCCcEEEecCcccCCCccHhhhc-cccCCceEEEEE
Q 026940 93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLR 148 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~tL~~~~-i~~~~~i~l~~~ 148 (230)
|+++++|.++++-+..... ..-....|.++|..|++...+++.. +++++.+.+...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5678999999999988765 4456778889999999988888874 777887777644
No 159
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.82 E-value=0.4 Score=29.92 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=42.9
Q ss_pred EEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
++++...|+.+|.+.+. ++++...+..+|+....+ .-.++-+++||+|.++--..||
T Consensus 9 ~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 44556789999987764 667778888999877543 3455679999999998887776
No 160
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.56 E-value=0.26 Score=32.74 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=38.3
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC---CCcEEEecC
Q 026940 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 123 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~g 123 (230)
.+++.+.|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-.
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlD 50 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVD 50 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEc
Confidence 456778999999999999999999999999999886 466777643
No 161
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.03 Score=46.10 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=46.3
Q ss_pred ceeEEEEeccCce--eEEEeeccccHHHHHHHhccccC-CC-CCceEEEEcCeecCCCCcccccC
Q 026940 152 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 152 ~~~i~v~~~~~~~--~~i~v~~~~tV~~lK~~i~~~~~-~~-~~~q~L~~~g~~L~d~~tL~~~~ 212 (230)
...+.++..+.+- ..+..+...||++||..++..+- -| +..|||+|.|+.|.|+..|.+.=
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 3456667666543 45666678899999999999884 33 34699999999999998887753
No 162
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=93.37 E-value=0.55 Score=29.18 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=44.3
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+. ++...|+.+|.+.+ ++++....+..+|.....+ .-.++-+++||.|.++.-..||
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 455444 45677899998765 4566777777999887532 3556679999999998887776
No 163
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.14 E-value=0.36 Score=30.96 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.5
Q ss_pred eeEEEeeccccHHHHHHHhccccCC--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...+.+....||.+|.+.+..++.- ......+..||+...+ .-.+.-+++||+|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5567788899999999999888731 3366778899988877 3666778999999998888777
No 164
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.09 E-value=0.42 Score=31.49 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=37.5
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEecCcc
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 125 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~ 125 (230)
+|++ ..+|..+.+.++++.+..+|++.|++++++.. ....|.|...+
T Consensus 2 ~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 2 RVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred EEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 3444 35778899999999999999999999999865 66777776543
No 165
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.07 E-value=0.52 Score=31.04 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=35.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
|+|.+ +.+|..+.+.+.++.+..+|+++|.+++++.. ..-.|.|.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 45556 34788999999999999999999999999875 34455553
No 166
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=92.65 E-value=0.033 Score=45.54 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred cccHHHHHHHhcc----------ccCCCCCceE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEEecCC
Q 026940 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 228 (230)
Q Consensus 172 ~~tV~~lK~~i~~----------~~~~~~~~q~-----L~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~~~~gg 228 (230)
+.+|.++|..++. ..++|.+.++ |.|+.+.+-|++||.+..-. .+.++.+.+-.-||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 5899999999999 8889999999 99999999889999887544 56677776665565
No 167
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.57 E-value=0.75 Score=29.92 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=44.6
Q ss_pred eeEEEeecc-ccHHHHHHHhccccC-C-C-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~-~tV~~lK~~i~~~~~-~-~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...++++.. .||.+|++.+.++++ . . .....+..|++...+ +.-+++|++|.++-...||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 346777766 899999999999874 1 1 133456678877664 4678999999998888776
No 168
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.42 E-value=0.56 Score=30.67 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.6
Q ss_pred ceeEEEeeccccHHHHHHHhccccC-CCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
....++++...|+.+|.+.+...+. ... ....+..||+... .+.-+++||+|.+.-...||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 4466777788999999999987752 111 1234557777654 34567899999888777776
No 169
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.33 E-value=0.74 Score=29.49 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.5
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g 199 (230)
+.|..++|+...+.+.+..|+.++-+.++++.|+.++...+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 356678899999999999999999999999999999988877544
No 170
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=92.33 E-value=0.89 Score=28.30 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=42.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|.|.+ +|+.+.+ +..|+.+|.+.+ ++++..-.+-++++.+. .....+.-+.+|+.+.++..
T Consensus 1 m~i~~---Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV---NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE---CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence 55655 7887777 346999998854 67775445567887664 44566777899999887643
No 171
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.86 E-value=0.78 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=33.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
..++..+|+++-+.+.|++.+.+|++.|.+++|+...
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 3567889999999999999999999999999999873
No 172
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.84 E-value=1.1 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=37.9
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
.+.++. ++..+.+.++.+.|..+|+.+|.++++.+.....|.|...
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 345543 6778899999999999999999999998877888888653
No 173
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.83 E-value=0.52 Score=30.48 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.7
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCC----CCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+.+|+.|.++....+
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4667788889999999999988642 234456667888776 3456888999988755443
No 174
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.61 E-value=1 Score=29.22 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=36.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.|.+.. +|..+.+.++++.|..+|+++|.+.++.+.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 344544 67899999999999999999999999998766777775
No 175
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=0.4 Score=39.58 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=46.3
Q ss_pred EEeeccccHHHHHHHhccccCCCCCceEEEE---cCe-----ecCCCCcccccCCCCCCEEEEEE
Q 026940 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~-----~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
..+.-.-||.+++..+..+.|+.+.+++|++ .|+ .++-+++|.+|.|++|+.+.+--
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 4455567999999999999999999999985 333 34567899999999999986643
No 176
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=91.55 E-value=1.4 Score=29.12 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=43.6
Q ss_pred eeEEEeeccccHHHHHHHhccccCC-----------CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~-----------~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...++++ ..||.+|.+.+.+++.- ..+...+..||+..+.+.. .-+++||+|.++-...||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566665 88999999999888641 0123556678877654321 568999999998888777
No 177
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.46 E-value=1.2 Score=28.22 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCc--EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 9 TGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|+ ...++++++.||.+|-+.+ ++++..-.+..||..+.. +.-+.+|+.+.++.
T Consensus 10 ng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 10 IGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred eccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 455 6678888999999998744 777766566688887743 55577788877764
No 178
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=91.37 E-value=0.99 Score=27.88 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=49.0
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHh---CCCCCCcEEE-ecCcccCCCccHhhhccccCCceEEEEE
Q 026940 84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~---~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+|+...++.+.+...--..++--... +-|+++-.|. -+|..++-++.+.+||+.++-++.+.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 357778888888877666666555544 3677776666 5788888899999999999998877654
No 179
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.18 E-value=0.57 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred EEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g 199 (230)
.+..++|+...+.+.|..|+.++-+.+.++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45568899999999999999999999999999999999888755
No 180
>PRK07440 hypothetical protein; Provisional
Probab=91.08 E-value=2.3 Score=26.98 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=45.5
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+. .++....||.+|-+ ..++++....+-.+|..+.- ....+.-+++||.|.++.-..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 4554 45567788988875 34677888888899988863 34666779999999988877776
No 181
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=91.00 E-value=0.28 Score=41.04 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=56.6
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCC--CCcccccCCCCCCEEEEEEEe
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~~ 225 (230)
..+.+++.+........|+..++..+|++.+...++|+++.+.+ +..+.++|.++++.+.+-.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 45678888888889999999999999999999999999999954 579999999999999776553
No 182
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=90.94 E-value=0.71 Score=42.16 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=38.1
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccc
Q 026940 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l 50 (230)
.++..+.+-++++.|+..+++.|+..+|+|...|.|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 3567888899999999999999999999999999999986443
No 183
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.83 E-value=0.56 Score=39.64 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=55.2
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--ecCcccCC-CccHhhhccccCCce
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 143 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i 143 (230)
+.-.|.|+..+|......++.+.||.+++.-|.....- +...+.|+ |-.+.|.| +.||++.|+.+...+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34678888999999999999999999999999987754 44456666 66788865 779999999875543
No 184
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.59 E-value=1.6 Score=28.95 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=33.7
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.||.. +|.+..+.++++.+..+|.++|.+++|+. ..-.+.|..
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 344444 78999999999999999999999999995 233444543
No 185
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.58 E-value=0.74 Score=29.30 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC
Q 026940 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
.+..++|+...+.+.++.|+.++-+.+.++.|+.++...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45578999999999999999999999999999999988888754
No 186
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.51 E-value=2.1 Score=26.03 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=35.4
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.+++..+.|+.+||..+.... =.++++|-...++. -+++||.|.+.-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 456777889999999876643 26789998776554 5678999977654
No 187
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=90.36 E-value=3 Score=26.01 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=43.2
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.++ ++...|+.+|.+.+ +.+.....+-.++..+.. ..-.++-+++||.|.++--..||
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPMQ--CAAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 455554 45667899888754 444556777789988753 23555679999999988877776
No 188
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.23 E-value=0.58 Score=39.58 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=54.4
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccC-CCCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 219 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~-~~~~~q~L~--~~g~~L-~d~~tL~~~~i~~~~~i 219 (230)
...|.|+..+|+..-..++.+.||.+++..|..--. -+-..+.|+ |.-+.| +++.||++-|+.+-..+
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 357889999999999999999999999999988664 344456665 777888 56889999999875433
No 189
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=90.11 E-value=2.8 Score=26.33 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=44.3
Q ss_pred cCceeEEEeecc-ccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+ +++.. .||.+|-+. .++++....+..+|..+.-+ ...++-+++||.|.++.-..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 46654 44444 578877653 46778878888999888643 4667779999999988877776
No 190
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=89.89 E-value=1.3 Score=28.39 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.|-..+|..-.+.+.|+.|+.|+=+++.++.|+.|+.=-+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 356677899999999999999999999999999999888777654
No 191
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.55 E-value=2.4 Score=26.29 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=44.5
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+ ++++..|+.+|-.. .+++++...+..+|..+.-+ .-.+.-+++||.|.++.-..||
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 45544 55667888887654 47788888888999777633 3555668999999998887776
No 192
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.43 E-value=1.9 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=43.0
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+. +++..|+.+|-+. .++++....+..++..+..+ ....+ +++||.|.++.-..||
T Consensus 6 NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence 455554 4467788877654 47788888898999877532 23345 9999999988877766
No 193
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=1.5 Score=40.25 Aligned_cols=183 Identities=18% Similarity=0.229 Sum_probs=97.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--e--cccccc--CCccccccccccccceeeee--ee-cCceeeEE
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQLE--DGRTLADYNIQKESTLHLVL--RL-RGGMQIFV 81 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~--~g~~l~--d~~tl~~~~i~~~~~i~l~~--~~-~~~~~v~v 81 (230)
+.+.+.|+.-.+++.+|+.|++..+++...-++. + +|..+. ++.||+.. .++.+|.+.+ .+ ++...++|
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI 954 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI 954 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence 3678899999999999999999999999877766 2 233333 45677654 3444443322 12 23333333
Q ss_pred Eec---cCe---e---EeeecCCCChHHHHHHHHHhHhC--------CCCCCcEEEec-----Ccc-cCCCccHhhhccc
Q 026940 82 KTL---TGK---T---ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQ-LEDGRTLADYNIQ 138 (230)
Q Consensus 82 ~~~---~g~---~---~~i~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~-L~d~~tL~~~~i~ 138 (230)
..+ .+. + +..-+..++|+++.|..+-.+.. +...+.|+..+ |+. ++++.++.+-.-.
T Consensus 955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence 322 111 1 23446788999998876654332 22333333322 222 3444444443300
Q ss_pred cCCceE-------EE-EEeecceeEEEEeccC------ceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 139 KESTLH-------LV-LRLRGGMQIFVKTLTG------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 139 ~~~~i~-------l~-~~~~~~~~i~v~~~~~------~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
-.+-.. +. .++-....|.++-+.- .--++.++ .+.+.+++..+++..|||.+...+.
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld-~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLD-ANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEec-CcchHHHHHHHHHhcCCchhhhhhh
Confidence 000000 00 0111223344443321 11223333 4568999999999999999987654
No 194
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=88.98 E-value=3.7 Score=31.53 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=53.4
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEE-c--C---eecCCCCcccccCCC-CCCEEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G---KQLEDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~-~--g---~~L~d~~tL~~~~i~-~~~~i~l~~ 223 (230)
.+.+.|...+|....+.+++++|+.++-..++.+.|++.. .+-|.+ . + .-++...++.+...+ ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 4567888889999999999999999999999999998543 234443 1 1 245666777777665 345665555
Q ss_pred Ee
Q 026940 224 RL 225 (230)
Q Consensus 224 ~~ 225 (230)
|.
T Consensus 83 r~ 84 (207)
T smart00295 83 KF 84 (207)
T ss_pred EE
Confidence 53
No 195
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.19 Score=41.57 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=47.3
Q ss_pred eeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCC-C-CCCcEEEecCcccCCCccHhhhccc
Q 026940 77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 77 ~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i-~-~~~q~L~~~g~~L~d~~tL~~~~i~ 138 (230)
+.+.++..+. +...+..+...||++||..++..+.- | +..|||+|.|+.|.|...+.+.-++
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 4555655554 45667778889999999999988742 2 3579999999999999888887543
No 196
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=88.76 E-value=2.6 Score=27.84 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=46.4
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.||+.+. +++..||.+|-+. .++++....+-.||..+.- ...+++-+++||.|.++.-..||
T Consensus 23 VNG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 23 INDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred ECCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 3466544 4567788888764 3678888888899988853 45777789999999988777776
No 197
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=88.54 E-value=1.3 Score=28.86 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=38.5
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-CCC--CCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
....++++...||++|.+.+..+.. +.. ....+..|++... .+.-+++|+.|.+.....
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Ppvs 80 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPIS 80 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCC
Confidence 4567788889999999999977652 111 1223556777654 334577899887764433
No 198
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=88.46 E-value=3.4 Score=25.60 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=42.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+ ++..+.||.++-. ..|+++..-.+.++|..+... ...+.-+++|+++.++-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 55555 77755 5567889998876 568888777777888666533 34555578888887764
No 199
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.63 E-value=3.6 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=36.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
++|.+. ..|....+.++++.+..+|.++|.+++++. ....+.|...
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 455554 467789999999999999999999999985 5666667655
No 200
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=87.54 E-value=1 Score=37.82 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.6
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCC--CccHhhhccccCCceEEEEE
Q 026940 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~ 148 (230)
....+++.+..+-....++..++..+|++.+..-++|+++.+.+ ...+..+|+..++.+.+.-+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 55678888998889999999999999999999999999999865 56899999999998866543
No 201
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=87.47 E-value=3.6 Score=25.56 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=42.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+.+ .++.|+.+|=+ ..++++..--+.+++..+... ....+ +++|+++.++-
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHH----HcCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEe
Confidence 55555 7776655 46789888877 568888877788888766432 23345 89999988764
No 202
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.15 E-value=2.8 Score=26.72 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=37.6
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC--eecC
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 203 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g--~~L~ 203 (230)
+.|..++|+...+.+.+..|+.+.-..+.++.|+.++...+...| +.++
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~ 53 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLD 53 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcccc
Confidence 466778999999999999999999999999999999877776433 4454
No 203
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.12 E-value=2.9 Score=26.62 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=38.1
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC--cccCCC
Q 026940 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG 129 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~ 129 (230)
+.|..++|+...+.+.++.|+.+.-..+.++.++.+....++..| +.++-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 346678999999999999999999999999999999887776433 344433
No 204
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=87.10 E-value=5.1 Score=24.95 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=41.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|.|+| +|+.+.+ ..+.||.+|-+. .++++..-.+-.++..+. ....+.+-+++|+.+.++-.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEE
Confidence 55666 6776665 567799988874 566555555667887664 33456666888998887643
No 205
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=1.5 Score=35.33 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=56.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l 221 (230)
-.+.|+..+|++...++++..|...++.-|.-+.+..++.+.|. |....+. -.++|..+++-+.+++.+
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 46778888999999999999999999999999998877666665 5555552 257999999999888754
No 206
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.30 E-value=3.4 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred eEeeecCCC-ChHHHHHHHHHhHhC-C-C-CCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940 88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++.+ .||.+|.+.+..+.+ + . .....+..|++...+ +.-+++|+.|.+.....+
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 356778776 899999999998874 1 1 123456677777664 456788999887755443
No 207
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=86.20 E-value=3.6 Score=36.30 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=55.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCC--ceEEE-eccccccCCccccccccccccceeeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPD--QQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----~~~--~q~l~-~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
||+|... .+...+-++.+.+|.|+-..+.+..|= +.. .-.|. .+|.+|+.+.||.+.|+.+|+.+++...
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 6777655 367888899999999999999988864 222 22333 5689999999999999999999999864
No 208
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=85.55 E-value=6.4 Score=24.84 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=44.8
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+++++...|+++|-+. .+++++......||.....+ .-.++-+++||.|.++.-..||
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 4556666899988754 46778888888999888643 4667788999999988877776
No 209
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=85.50 E-value=3.3 Score=36.54 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=53.9
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCC------CCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~------~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
++|... .+...+.++.+..|.+|--.+-+..+- ++....|. -+|..|+.+.||.+.||.||+.+++.-+.+
T Consensus 5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 455533 355788888999999998888776653 23445666 577899999999999999999999986543
No 210
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=85.50 E-value=6.5 Score=24.61 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=42.4
Q ss_pred CEEEEEccCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+. +..+ .||.+|-+ ..++++..--+-+++..+.. .....+-+++|+.+.++-
T Consensus 1 m~I~v---NG~~~~--~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIE--VPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEE--cCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 55655 777664 4454 57888776 56888876666788877643 356677788899887764
No 211
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=85.50 E-value=0.25 Score=40.55 Aligned_cols=62 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred eeeEEEeccCeeEeeecC---C--CChHHHHHHHHHh----------HhCCCCCCcE-----EEecCcccCCCccHhhhc
Q 026940 77 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~tL~~~~ 136 (230)
+.|.++...+..+.+.+. + +.+|.++|..+++ ..++|.+..+ |+|+.+.+.|+.+|.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 555555554444433322 2 5799999999999 8899999988 999999998988988876
Q ss_pred cc
Q 026940 137 IQ 138 (230)
Q Consensus 137 i~ 138 (230)
-.
T Consensus 159 ~~ 160 (309)
T PF12754_consen 159 AD 160 (309)
T ss_dssp --
T ss_pred hc
Confidence 44
No 212
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=85.39 E-value=6.5 Score=24.17 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=40.4
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+ ++++..|+.+|.+.+.. + ....+..+|.....+ .-.+.-+++||+|.++.-..||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQTL--SLPDGATVADALAAYGA----R-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEEE--ECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 35544 45667899999876633 2 235666888776532 2344458999999998888777
No 213
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=85.15 E-value=4.4 Score=26.28 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=36.0
Q ss_pred eeEEEeccCeeEe-eecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940 78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 78 ~v~v~~~~g~~~~-i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
.+.+. .++.... +.+..+.+..+|+.+|...++.+.....+.|...
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~ 49 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE 49 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC
Confidence 34443 3445555 8899999999999999999999988888888653
No 214
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.96 E-value=6.8 Score=30.00 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=33.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
.+.|..++|....+.+++..|+.++-+.|..+.|++.
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 4677888999999999999999999999999999954
No 215
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=84.12 E-value=1.9 Score=30.45 Aligned_cols=56 Identities=21% Similarity=0.480 Sum_probs=39.1
Q ss_pred eec-cccHHHHHHHhcccc----CCCC------CceEEEE----------------cC-eec---CCCCcccccCCCCCC
Q 026940 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIF----------------AG-KQL---EDGRTLADYNIQKES 217 (230)
Q Consensus 169 v~~-~~tV~~lK~~i~~~~----~~~~------~~q~L~~----------------~g-~~L---~d~~tL~~~~i~~~~ 217 (230)
++. +.||.+|++.+.+.. |++| +.+++++ .. ..| +++++|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 889999988877654 4433 2233332 11 466 778999999999999
Q ss_pred EEEEEEE
Q 026940 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~l~~~ 224 (230)
.|.++.+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987654
No 216
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=84.04 E-value=3.4 Score=27.27 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=40.8
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCC------C-----CCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++ ..||.+|.+.+..+++- . .....+..||+....+.. ..+++|+.|.+.....+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34567776 88999999999887641 0 123455577776654322 56889999988755443
No 217
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=83.96 E-value=4 Score=24.80 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=36.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
|+|+| +|+ .+++..+.|..+||.++.. +.-.++++|-+..++..|. +|+.+.+
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~ 53 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFL 53 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEE
Confidence 67777 444 5677888999999997654 2337789998887766654 4455544
No 218
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=83.95 E-value=3.5 Score=26.54 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=32.7
Q ss_pred cCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940 161 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 161 ~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g 199 (230)
+|....+.++ .+.|..+|+++|.++++.+.....+.|.+
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567788888 89999999999999999876677777765
No 219
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=83.92 E-value=3.3 Score=25.65 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=41.1
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+ +++...|+.+|.+.+ ++++....+..||+....+ ...+.-+++|+.|.+.....+
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 34444 556678999988775 4677777777888877442 244456889999988755443
No 220
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=83.58 E-value=4.8 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=29.2
Q ss_pred EEeec-cccHHHHHHHhcc-ccCCCC-C---ceEEEEcCee----cCCCCcccccCCCCCCEEEE
Q 026940 167 LEVES-SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 167 i~v~~-~~tV~~lK~~i~~-~~~~~~-~---~q~L~~~g~~----L~d~~tL~~~~i~~~~~i~l 221 (230)
+.++. .+|+.+|-..|.+ +.|... + .-.++|.... -...++|+++||.+|+.+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 34453 5799999887654 666533 2 2234443332 12367999999999998865
No 221
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.50 E-value=7.1 Score=32.68 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=48.4
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
||+. ++++...|+.+|-+. .+++++...+..||..+.- ....++-+++||.|.++.-..||.+
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCC
Confidence 4554 445667788888754 4778888888899988853 3467778999999999999999864
No 222
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=83.03 E-value=2.2 Score=30.13 Aligned_cols=55 Identities=22% Similarity=0.523 Sum_probs=37.2
Q ss_pred ecC-CCcHHHHHHHhhhh----hCCCCCce------EEEec--c---------------ccc---cCCcccccccccccc
Q 026940 17 VES-SDTIDNVKAKIQDK----EGIPPDQQ------RLIFA--G---------------KQL---EDGRTLADYNIQKES 65 (230)
Q Consensus 17 v~~-~~tv~~lK~~i~~~----~gi~~~~q------~l~~~--g---------------~~l---~d~~tl~~~~i~~~~ 65 (230)
|+. +.||.+|++.|.+. .|+||.+- +++.. | ..| +++.+|.++|+.+++
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 666 78999988776655 57777332 22221 1 235 567899999999999
Q ss_pred ceeeee
Q 026940 66 TLHLVL 71 (230)
Q Consensus 66 ~i~l~~ 71 (230)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 887753
No 223
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=83.03 E-value=2.4 Score=27.01 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=46.9
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCC--CCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...+.+....||.+|.+.+..+.+- ......+..||....+ ...+.-+++|+.|.++....+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5677888899999999999888741 2356677788888877 366777899999988754443
No 224
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=82.51 E-value=3.2 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.8
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 577889999999999999999999999999999854
No 225
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=82.29 E-value=6.2 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=32.4
Q ss_pred CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
+|..+. +.+.++.|..+|+.+|...++.++..-.+.|.
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 455555 89999999999999999999999777778775
No 226
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=82.24 E-value=6.2 Score=25.87 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.7
Q ss_pred eccCeeEeeecCC--CChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940 83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 83 ~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
..+|....+.+++ +.+..+|++.+..+++++ ...|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 4678888888888 779999999999999999 555555
No 227
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=82.22 E-value=4.2 Score=37.38 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.0
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCccc
Q 026940 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
..++..+.+-++++.|...+++.|...+|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 45677789999999999999999999999999999999987543
No 228
>PRK07440 hypothetical protein; Provisional
Probab=82.10 E-value=9.4 Score=24.16 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|+. .++..+.||.+|-. ..++++..--+-++|..+. .....++-+++|+.+.++-
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence 6775 55567889998876 6678876666678887664 3456677788888887753
No 229
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.77 E-value=6.6 Score=25.19 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=33.3
Q ss_pred EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
|.+.. +|..+.+.+. .+.|..+|+++|.+.++.+...-.+.|.
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 44533 4678888888 8999999999999999998644455553
No 230
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=81.31 E-value=5.1 Score=25.78 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.0
Q ss_pred EEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
.|..++|+...+.+.+.+|+.++-+..+++.++.|+.--|-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 35567899999999999999999999999999988765443
No 231
>KOG4261 consensus Talin [Cytoskeleton]
Probab=81.20 E-value=8.8 Score=35.77 Aligned_cols=101 Identities=26% Similarity=0.334 Sum_probs=78.2
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEe------cCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
+-.-++.+.|+++|-+--..|.+++. .-+....|+. .|-.|+.++++.+|-+.+++++.-.- .+-...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence 44567889999999998888887764 2255555553 34557899999999999999885432 223466
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCC
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 189 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~ 189 (230)
++..+|..-++.++.+.+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 777888888999999999999999999999873
No 232
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=80.37 E-value=7.4 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=35.2
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
+...+|++.-+.|+.+.|..+|+.++.+..+++.. ..|.|.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 34568999999999999999999999999999876 666663
No 233
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=80.31 E-value=9.7 Score=25.13 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=40.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|+.+.+ +.+.||.+|=. .+++++..--+-+||..+ +....+++-+.+|+.|.++-
T Consensus 24 NG~~~~~--~~~~tl~~LL~----~l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 24 NDQSIQV--DISSSLAQIIA----QLSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCeEEEc--CCCCcHHHHHH----HcCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEE
Confidence 6665544 56778888776 358888666677888777 44567777789999988764
No 234
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=79.57 E-value=16 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=31.6
Q ss_pred ccCeeEeeecCC-----CChHHHHHHHHHhHhCCCC-CCcEEEecCc
Q 026940 84 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 124 (230)
Q Consensus 84 ~~g~~~~i~v~~-----~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~ 124 (230)
.+|....+.++. +.+..+|+++|.+.+++++ ....|.|...
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 456666666664 6899999999999999987 5667777653
No 235
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=79.41 E-value=2.4 Score=30.04 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=34.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccc
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~ 58 (230)
+...+-|+.+.||+++...|..+.++++++--|+.++..+....++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 344446899999999999999999999988333345644444455544
No 236
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=79.36 E-value=8 Score=23.81 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=39.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+|+.+.+ ..+.||.+|.+ ..+++++.-.+..+|+.+.. ....++-+++|+.+.++..
T Consensus 4 Ng~~~~~--~~~~tv~~ll~----~l~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEV--EDGLTLAALLE----SLGLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEc--CCCCcHHHHHH----HcCCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEe
Confidence 5555544 66789999988 45677766666688877643 2355567888988887643
No 237
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=79.22 E-value=6.7 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.4
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
|..++|+.-.+.+.+..||.+.-.++.++.|+.++...++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 34678999999999999999999999999999999888886553
No 238
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=79.10 E-value=9.3 Score=24.51 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=42.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhC-CCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEE
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 82 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~ 82 (230)
+.|-.-..|+.|+.+|+..|.+++. +.|....+.. ..|+|.. .|.+.+...+.=+....+.+++.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~---~cDLD~d~~V~DVf~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSD---GCDLDPDFLVKDVFNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCC---CCCCCcccEeeeeeccCCEEEEEec
Confidence 4455567899999999999999976 5665555554 3455542 4666666665544444444454443
No 239
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=78.62 E-value=5.2 Score=25.97 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=33.1
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
-++.|.+.++.+..+|.++|.+++..+++.-.|.|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 467789999999999999999999999999899985
No 240
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=78.57 E-value=11 Score=24.67 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=29.7
Q ss_pred EEEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCC
Q 026940 2 QIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~ 37 (230)
+|.+ +.+|.+..+.+++ +.+..+|++.|..+++++
T Consensus 2 ~vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKV-TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3444 3478999999999 669999999999999999
No 241
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=78.39 E-value=3.4 Score=27.96 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=25.2
Q ss_pred EEEEcCeecCCCCccccc-CCCCCCEEEEEEEecCC
Q 026940 194 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGG 228 (230)
Q Consensus 194 ~L~~~g~~L~d~~tL~~~-~i~~~~~i~l~~~~~gg 228 (230)
.|-|.|+.|..+++|++| |-.+-+.|.+-+..+|+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 466899999999999999 33455566555555554
No 242
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=8.1 Score=31.35 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=56.6
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccC--C-CccHhhhccccCCceEE
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d-~~tL~~~~i~~~~~i~l 145 (230)
..-.+.|+..+|++....+++..|...++.-+.-..+...+...|. |-...+. | .++|..+++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4467888889999999999999999999999999999887777665 3334442 2 56899999988877643
No 243
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=77.51 E-value=4.5 Score=28.68 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=47.7
Q ss_pred cCceeeEEEecc---CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhcc---ccCCceEEEE
Q 026940 74 RGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 74 ~~~~~v~v~~~~---g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
++.+.|.|.-.. .+...+-|+.+.||+++...|..+.+++++..-|+.++..+..+.++++.-- .++.-+++..
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 344555554322 2223336899999999999999999999988544466656666667776532 2344555544
No 244
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.24 E-value=4.3 Score=36.41 Aligned_cols=65 Identities=35% Similarity=0.526 Sum_probs=42.0
Q ss_pred CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE--c--Ce-ecCCC-------------CcccccCCCC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~--~--g~-~L~d~-------------~tL~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-+-. +.| ++..-|.| + |+ .|.|. .||++|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3557888888999999999985432 222 34555553 2 23 45432 4899999999
Q ss_pred CCEEEEEEEec
Q 026940 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~l~~~~~ 226 (230)
|+++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999998863
No 245
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=77.04 E-value=4.4 Score=37.89 Aligned_cols=64 Identities=17% Similarity=0.377 Sum_probs=49.9
Q ss_pred cCceeEEEeec-cccHHHHHHHhccccCCCCCceEEE-EcCeecCCCCcccccCC--CCCCEEEEEEE
Q 026940 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 161 ~~~~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~~L~d~~tL~~~~i--~~~~~i~l~~~ 224 (230)
.|+..++..+. ..|+++||.+|+.++|.....+.+. -+|..+..++.|..|.- .+-+-|+++.+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeeh
Confidence 46777777775 5699999999999999999888887 56677888899998873 35556766644
No 246
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=77.02 E-value=8.2 Score=25.29 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=41.9
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccccccCCccccccccccccceeeeee
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+..+...+....||.++=+ ..|+|...-.++ .||+..+-+ |-+.+|+.+.+...
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence 5678889999999999877 899999777555 688877654 55678888877643
No 247
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=76.73 E-value=8.8 Score=24.72 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.4
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
.|..++|+...+.+.++.|+.++-+..+.+.++.|..--|..
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 355688999999999999999999999999999988766553
No 248
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=76.61 E-value=17 Score=23.56 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=36.4
Q ss_pred EEeec-cccHHHHHHHhccccCC-----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 167 LEVES-SDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 i~v~~-~~tV~~lK~~i~~~~~~-----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
++++. ..||.+|++.+.+++.- .....+..-|+..-.+ +.-+++||.|-++-...||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44443 47999999999888631 1222333345533222 3358999999888877776
No 249
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=76.15 E-value=10 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=33.6
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
++-.+|++..+.|+.+.|..+|+.++++.++++.. ..+.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34568899999999999999999999999998765 55554
No 250
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.04 E-value=4 Score=33.97 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=41.8
Q ss_pred ecCCCChHHHHHHHHHhHhCCCCCCcEEEec---Ccc-----cCCCccHhhhccccCCceEE
Q 026940 92 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 92 ~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~-----L~d~~tL~~~~i~~~~~i~l 145 (230)
-+.-.-||.+++..+..+.|+.+.+++|++- |+. ...+.+|..|.|++|+.+.+
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 3444559999999999999999999999963 332 33466788888999887754
No 251
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=74.87 E-value=16 Score=23.44 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=37.4
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
-..+|..-.+.+.|+.||.|+=.+.-++.|+.++.-.++..|
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 356889999999999999999999999999999888777655
No 252
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=73.81 E-value=18 Score=23.93 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=31.2
Q ss_pred EecC-CCcHHHHHHHhh-hhhCCCCC----ceEEEeccc----cccCCccccccccccccceeeeeee
Q 026940 16 EVES-SDTIDNVKAKIQ-DKEGIPPD----QQRLIFAGK----QLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 16 ~v~~-~~tv~~lK~~i~-~~~gi~~~----~q~l~~~g~----~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
.++. .+|+.+|-++|- .+.|+... ..++.|... .-...++|+++||.+|+.+.+.--.
T Consensus 3 ~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 3 KVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp EE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETT
T ss_pred EEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcC
Confidence 3443 369999999864 46775542 223444332 2234689999999999987765433
No 253
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=73.53 E-value=7.4 Score=26.27 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhccccCCCCCceEEEE-cC------eec-C--CCCcc--cccCCCCCCEEEEEEEecCC
Q 026940 171 SSDTIDNVKAKIQDKEGIPPDQQRLIF-AG------KQL-E--DGRTL--ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 171 ~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g------~~L-~--d~~tL--~~~~i~~~~~i~l~~~~~gg 228 (230)
...||.+|-+.+.+++. ..+-++.. +| ..| . |-..+ .++-+++||+|.++--..||
T Consensus 27 ~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 27 KPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred CCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 56799999999988772 22222221 11 122 1 22233 35678999999998877776
No 254
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=73.39 E-value=18 Score=24.54 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.4
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEE
Q 026940 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~ 120 (230)
|.|--.++...++.++.++||+++-..+..++.++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344456787889999999999999999999998776 444544
No 255
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=72.69 E-value=24 Score=23.39 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=43.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe--c-----CcccCCCccHhhh
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--A-----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~-----g~~L~d~~tL~~~ 135 (230)
.-|.|...+|....+.|++..|++++-+.+..+.....+.-.-++ . .+.++|...+-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 346677789999999999999999999999999987665544332 2 2456776654443
No 256
>KOG4261 consensus Talin [Cytoskeleton]
Probab=72.52 E-value=13 Score=34.72 Aligned_cols=101 Identities=26% Similarity=0.326 Sum_probs=78.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC---CCceEEEec------cccccCCccccccccccccceeeeeeecCceeeE
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~---~~~q~l~~~------g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
+-.-++.+.|+.+|.|--..|.+++... +..-.|+.. |--|++.++|..|-+.+++++...- ..-...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence 4567899999999999888888776432 334444432 4557888999999988888876543 234567
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCC
Q 026940 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
+++++|..-++.++...+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 888999999999999999999999999888873
No 257
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=72.30 E-value=6.4 Score=35.36 Aligned_cols=65 Identities=35% Similarity=0.520 Sum_probs=41.3
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-C---c-ccCCC-------------ccHhhhcccc
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d~-------------~tL~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++..-|.|. | . .|.|. .||+.|++++
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3558889999999999999997643 232 334444432 1 2 33331 4899999999
Q ss_pred CCceEEEEEee
Q 026940 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.+..+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99998887654
No 258
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=72.10 E-value=30 Score=24.03 Aligned_cols=49 Identities=4% Similarity=0.179 Sum_probs=38.3
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCccc--CCCccHhhhc
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 136 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L--~d~~tL~~~~ 136 (230)
.-.+.+++++|++.+-..+....+++++++-+.|-+... ..++.+...-
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly 96 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLY 96 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHH
Confidence 346789999999999999999999999999988866554 3445554443
No 259
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.75 E-value=8.6 Score=24.94 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++++|=.++|..|+..+|+.+..-+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 368999999999999999999999999886554
No 260
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.51 E-value=15 Score=34.00 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=62.7
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe----cCccc--CCCccHhhhccccCCceEEEEE--e-ecceeEEE
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVLR--L-RGGMQIFV 157 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~----~g~~L--~d~~tL~~~~i~~~~~i~l~~~--~-~~~~~i~v 157 (230)
+++.+.|+...+++.+|+.|++..+++.+..+++. +|..+ .++.+|... .++.+|.+.+- + ++...+.|
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI 954 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI 954 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence 36788999999999999999999999999999873 23333 456677664 45666655431 1 22223333
Q ss_pred Eec---cCc------eeEEEeeccccHHHHHHHhccc
Q 026940 158 KTL---TGK------TITLEVESSDTIDNVKAKIQDK 185 (230)
Q Consensus 158 ~~~---~~~------~~~i~v~~~~tV~~lK~~i~~~ 185 (230)
... ..+ .+..-+..++|+.+.|..+-.+
T Consensus 955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~ 991 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRM 991 (1203)
T ss_pred EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHH
Confidence 322 111 1344567789999988765443
No 261
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=70.05 E-value=10 Score=25.17 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=35.4
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~ 194 (230)
.+.|..++|....+++..+++..++-+.++.+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 45666778999999999999999999999999999877543
No 262
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=69.38 E-value=19 Score=23.84 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=32.1
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
|.|-..+|..-.+.|++.+|++++-+.+..+.+..+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~ 41 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDD 41 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC
Confidence 4555678999999999999999999999999987664
No 263
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=69.25 E-value=14 Score=24.52 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=36.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.|-..+|....+++..+++-.++-+.+..+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 45666778999999999999999999999999999997665
No 264
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=69.21 E-value=29 Score=22.63 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEEeccCc----eeEEEeeccccHHHHHHHhccccCC--CCCceEE
Q 026940 155 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRL 195 (230)
Q Consensus 155 i~v~~~~~~----~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~L 195 (230)
+.|...++. .-.+.+..++|+.++-.++.+++++ .+..+.|
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 444455555 6789999999999999999999998 4556777
No 265
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=68.83 E-value=29 Score=22.55 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCC--CCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~--~~~q~L~ 196 (230)
+....+.|+.++|..++-..+.+++++. ++.+.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999975 5666665
No 266
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=68.69 E-value=9.6 Score=25.62 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE-EEecccc
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~~ 49 (230)
.+.+.+.|++.+|=.++|+.|+..+|+++..-+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 578999999999999999999999999996654 4455543
No 267
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=68.15 E-value=6.9 Score=26.21 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.8
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcCeec
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 202 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~~L 202 (230)
...+.+.|++++|=.++|+.|+..+|+++...+-+ +.|+.-
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 36789999999999999999999999999887655 677543
No 268
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=67.87 E-value=7.7 Score=25.99 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceE-EEeccc
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~ 48 (230)
+.+++.|++++|=.++|+.|+..+|+++..-+ +.+.|+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk 59 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGK 59 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCC
Confidence 68999999999999999999999999996554 446664
No 269
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.63 E-value=11 Score=24.86 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.++=.++|+.|+..+|+.+..-+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~Vn 53 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVN 53 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 468999999999999999999999999986554
No 270
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=66.94 E-value=24 Score=22.42 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=41.4
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEE-cCeecCCCCcccccCCCCCCEEEEE
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
.+.|++++....+-+-.++.+.+|+....++. .|.-....+|-.+--++-|+.+.+.
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 36778887777777777888999998887774 5666678888888888999988763
No 271
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=66.51 E-value=31 Score=22.03 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=47.2
Q ss_pred EEeeccccHHHHHHHhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
+.|+++.....+-+-.++++.+|+....++ -.|.=....++-..+-++.|+.+.+.-|-|
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 567777767667667788889998877666 566666778888888899999999887755
No 272
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=66.04 E-value=22 Score=24.10 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.9
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEE
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~ 196 (230)
|.|-..++.-.++.++.++||+++-..+.++..++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 444445666678999999999999999999998765 566665
No 273
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=65.53 E-value=33 Score=23.65 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=37.8
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCc-EEEecCcccCCCccHhhhc---cccCCceEEEE
Q 026940 91 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYN---IQKESTLHLVL 147 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~~---i~~~~~i~l~~ 147 (230)
+-++.+.||+++...|..+..++++.- -|+.++.....+.++++.- -.+++-+++..
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Y 97 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTY 97 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEe
Confidence 447888999999999999999988753 3445665556777887653 23445566554
No 274
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.46 E-value=42 Score=23.16 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=48.9
Q ss_pred eeEEEEecc-CceeEEEeeccccHHHHHHHhccc----cC--CCCC-ceEEEEcCe--ecCCCCcccccC-----CCCCC
Q 026940 153 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKES 217 (230)
Q Consensus 153 ~~i~v~~~~-~~~~~i~v~~~~tV~~lK~~i~~~----~~--~~~~-~q~L~~~g~--~L~d~~tL~~~~-----i~~~~ 217 (230)
+.|.+...+ ...+.+.+++++|+.++.+.+-.+ .+ -+++ .+.|.-.|+ -|..+.+|.+|. ++.|.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 334444433 456899999999999997776554 11 2333 567776663 355667787773 57888
Q ss_pred EEEEEEEec
Q 026940 218 TLHLVLRLR 226 (230)
Q Consensus 218 ~i~l~~~~~ 226 (230)
.++|++..+
T Consensus 98 ~~~L~L~~~ 106 (108)
T smart00144 98 EPHLVLMTL 106 (108)
T ss_pred CceEEEEec
Confidence 888887643
No 275
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=65.42 E-value=3.1 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred HhccccCCCCCceEEEE---cCeecCCCCcccccCCCC
Q 026940 181 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 181 ~i~~~~~~~~~~q~L~~---~g~~L~d~~tL~~~~i~~ 215 (230)
.|+++..+.|+.-.|.. .+.+|+-+++|.++||++
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47888888888888873 557899999999999963
No 276
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=65.07 E-value=37 Score=22.42 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=42.4
Q ss_pred eEEEeeccccHHHHHHHhcccc-C--CCC--C-ceEEEEcC--eecCCCCcccccCCCCCCEEEEEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--~~~--~-~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.-+.|+..+|+.++=++++... | +++ . ..++.++| ..+..+.++.+-||.+-+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4467889999999988887765 4 332 2 45666888 8899999999999999999988764
No 277
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=63.30 E-value=18 Score=25.00 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=29.3
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCceEEE-eccccccCCccccc
Q 026940 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLAD 58 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~tl~~ 58 (230)
-|+.+.||+++...|.++..+++++=.++ .++..+..+.++++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 47889999999999999999998643333 45644555566654
No 278
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=62.70 E-value=25 Score=30.51 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=62.1
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccCC---CccHhhhccccCCceEEEEE
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+..++.|+.++|..+.-+++.++-...++..+.+.-++......|- |-.++..+ .++|.+..+.+...+.++.+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 35678889999999999999999999999999998888887777775 66666643 57999999999887766544
Q ss_pred ee
Q 026940 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
..
T Consensus 392 ~r 393 (506)
T KOG2507|consen 392 KR 393 (506)
T ss_pred CC
Confidence 43
No 279
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=62.06 E-value=27 Score=23.00 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=39.0
Q ss_pred EEecCCCcHHHHHHHhhhhhCCC-------CCceEEEeccc-ccc------CCccccccccccccceeeee
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QLE------DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~-------~~~q~l~~~g~-~l~------d~~tl~~~~i~~~~~i~l~~ 71 (230)
+++++++|+.++-+.+.....+. -+...|++.+. .|. =+++|.+. +.+|..+.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999999884332 34455666542 121 25788888 88888877753
No 280
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=61.99 E-value=13 Score=23.94 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEec-CCCcHHHHHHHhhhhhCC--CCCceEEEec
Q 026940 12 TITLEVE-SSDTIDNVKAKIQDKEGI--PPDQQRLIFA 46 (230)
Q Consensus 12 ~~~~~v~-~~~tv~~lK~~i~~~~gi--~~~~q~l~~~ 46 (230)
...+.++ ...+|.|||..|-.+.++ ....+..+++
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~n 48 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYN 48 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEE
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEEC
Confidence 4456664 356999999999766555 3343344444
No 281
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.87 E-value=37 Score=28.56 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=47.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+| ||+.+ ++..+.||.+|-+ ..+++++.--+.+||+.+. .....++-+++|+.|.++--..
T Consensus 1 M~I~V---NGk~~--el~e~~TL~dLL~----~L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 1 MRIRL---NGEPR--QVPAGLTIAALLA----ELGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CEEEE---CCEEE--ecCCCCcHHHHHH----HcCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEec
Confidence 55555 67754 4567789988876 5688988777778998774 4456777799999998876543
No 282
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=61.30 E-value=47 Score=22.25 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCcEEEEEec-----CCCcHHHHHHHhhhhhCCCC-CceEEEec
Q 026940 9 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~~~v~-----~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
+|...-+.++ ++.+..+|+++|.+.+++++ ..-.|.|.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 5666666666 47899999999999999998 44455564
No 283
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=61.10 E-value=18 Score=24.31 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=33.7
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcCee
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 201 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~~ 201 (230)
...+.+.|++.+|=.++|+.++..+++++...+-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 46899999999999999999999999998887644 55543
No 284
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=61.09 E-value=13 Score=34.89 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=46.1
Q ss_pred cCeeEeeecCCC-ChHHHHHHHHHhHhCCCCCCcEEEec-CcccCCCccHhhhcc--ccCCceEEE
Q 026940 85 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~tL~~~~i--~~~~~i~l~ 146 (230)
.|+...++.+.. .|+++||..|+.+.|+....+.+.-+ |..+..++.+..|.- .+-+-|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 467777777764 59999999999999999999998854 556777788888763 223345444
No 285
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=60.74 E-value=13 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++++|=.++|..|+..+|+-+..-.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVN 53 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVN 53 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 378999999999999999999999999886654
No 286
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=60.67 E-value=17 Score=24.63 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=23.0
Q ss_pred EEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 118 ~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.|.|.|++|..+.+|++| +..+..-.++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 577999999999999999 655665555544
No 287
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=60.61 E-value=32 Score=22.48 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=40.2
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecCcccCCCccHhhhccccCCceEEEE
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+..+...++...||.++-+. .|+|....-++ .||+...- +|-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 45677889999999887654 79999988777 68876643 36677899887753
No 288
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=60.11 E-value=33 Score=22.27 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCC--CCCcEEE
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 120 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~i~--~~~q~L~ 120 (230)
+....+.|+.++|..++-..+.+++++. +....|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999987 5555555
No 289
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=59.24 E-value=36 Score=22.33 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=27.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
+...++.|++++|..++-..+.+++++...
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 567899999999999999999999999753
No 290
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=59.23 E-value=35 Score=29.46 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=47.4
Q ss_pred EEEeccCceeEEEeeccccHHHHHHHhcccc--CCCCCceEEEE----cCe--ecCCCCcccccCCCCCCEEEEEE
Q 026940 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIF----AGK--QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~--~~~~~~q~L~~----~g~--~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
..+...| ...+++.++++.+-|-.++-... +..|++..+.- .|. -+..++|+.+.|++.|+.+++.+
T Consensus 4 rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 4 RFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 3443333 45788999999888877665544 35677777763 222 13456899999999999999987
No 291
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=58.87 E-value=14 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=33.3
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc-------cc-CC--CccH--hhhccccCCceEEEEEee
Q 026940 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-ED--GRTL--ADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-------~L-~d--~~tL--~~~~i~~~~~i~l~~~~~ 150 (230)
++.+...||.+|-+.+.+.+. ....+++..+. .| ++ -..+ .++-+++|+.|.+.....
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCC
Confidence 444467799999999988772 33333332211 11 11 1223 356688899887765443
No 292
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=58.71 E-value=18 Score=25.32 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|..+.++.+++-.++| ++.....+.++++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 3589999999999999999999997654444 4433344445543
No 293
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=58.65 E-value=13 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=22.4
Q ss_pred HHHhHhCCCCCCcEEEe---cCcccCCCccHhhhcccc
Q 026940 105 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 105 ~i~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~~i~~ 139 (230)
.|++++.+.|....|.- .+.+|+-..+|.++||..
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 58899999999988884 456788899999999984
No 294
>CHL00030 rpl23 ribosomal protein L23
Probab=58.48 E-value=17 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
..+.+.+.|++++|=.++|+.|+..+|+.+..-.
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VN 51 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVN 51 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 3578999999999999999999999999886553
No 295
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.10 E-value=11 Score=32.84 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=49.8
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.++.+..-|-.++...|..+.|++-+..+.+-+|+.++-.+||.+-|++.+....+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 456677778999999999999999999999999999999999999999877765444
No 296
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=57.89 E-value=75 Score=23.51 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=67.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee----eeec-CceeeEEEeccC
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV----LRLR-GGMQIFVKTLTG 86 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~----~~~~-~~~~v~v~~~~g 86 (230)
.|+-++-..+|.+.|-.++++..||- |++.+|..|...- .||-..|.-+.-. +... ..+.+.|+ -|
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI~----R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~--vG 75 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGIR----RVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVK--VG 75 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCEE----EEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEE--Ee
Confidence 45556667789999999999988875 8999998887532 3444333322111 1111 12333332 24
Q ss_pred eeEeeecCC-CChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhc
Q 026940 87 KTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 87 ~~~~i~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
+ +.+++.. .+.+..+++...+.+. ....+ ..|+-+....|+.||-
T Consensus 76 r-i~lele~~~~~ie~I~~iCee~lp---f~y~i-~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 R-IILELEDEEDVIEKIREICEEVLP---FGYDI-KEGKFIRTKPTVTDYA 121 (153)
T ss_pred E-EEEEecCcHHHHHHHHHHHHHhCC---CceEe-eeeEEeccCCchhhhh
Confidence 3 6667777 6667777765555442 22333 3588888888999884
No 297
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=56.74 E-value=17 Score=23.64 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHhhhhhC
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
.+++++.++|+.++|+.+.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 57899999999999998887765
No 298
>PRK01777 hypothetical protein; Validated
Probab=56.72 E-value=57 Score=22.03 Aligned_cols=63 Identities=6% Similarity=0.059 Sum_probs=40.4
Q ss_pred CEEEEEccC---CcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-------eEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~---g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-------q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.|.|-.-. .....+++.++.||.++=. ..||+... -.+..+|+.... +.-+.+|+++.++
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~----~sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIR----ASGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHH----HcCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 455554432 2346788999999999877 45776652 245567776644 3346778888776
Q ss_pred ee
Q 026940 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
-.
T Consensus 75 rP 76 (95)
T PRK01777 75 RP 76 (95)
T ss_pred cC
Confidence 43
No 299
>PRK08453 fliD flagellar capping protein; Validated
Probab=56.16 E-value=48 Score=30.90 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=51.0
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhh-----------CCCCCceEEEeccccccCC------ccccccccccccceeee
Q 026940 8 LTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLV 70 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~-----------gi~~~~q~l~~~g~~l~d~------~tl~~~~i~~~~~i~l~ 70 (230)
.+|+.++++|....|+.+|..+|-+.. |= ..-.+|.+.+...-.+ .+|++..+..|.--.+-
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~-~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~ 213 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGG-NDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVD 213 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCC-CccEEEEEeccCcCCCceEEEeccccccccCCccccccc
Confidence 469999999999999999999999532 21 1123555554443322 24444444444321111
Q ss_pred eeecCceeeEEEeccCeeEeeec
Q 026940 71 LRLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v 93 (230)
..-.+.+.|.++..+|+.+.+.+
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 214 GSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred ccccccceeeeeccCCccccccc
Confidence 12234578888888887765544
No 300
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=56.13 E-value=15 Score=23.29 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=31.1
Q ss_pred cccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 172 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
..|+++|.+..++++|.+ ....+.-+|-+.+|=. -|.+|+.++++
T Consensus 25 P~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~-----~IRDgD~L~~~ 69 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFS-ATKVLNEDGAEIDDID-----VIRDGDHLYLV 69 (69)
T ss_pred CccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEE-----EEEcCCEEEEC
Confidence 469999999999999996 3344445555554421 26788888763
No 301
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.49 E-value=3 Score=36.23 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=48.1
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
.++....-|=.+|...|.++.|++....+.+.+|+.+.-.+||.+-|++.+..+.+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 344555667889999999999999998999999999999999999999887766544
No 302
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=55.34 E-value=37 Score=23.74 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=38.9
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecCcccCCCccHhhhcc---ccCCceEEEE
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++...|..+..+.++.--.+ .++.....+.++++.-- .+++.+++..
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Y 105 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTY 105 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEE
Confidence 3458999999999999999999888764444 45544455666665432 1244555544
No 303
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=54.23 E-value=58 Score=21.12 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=24.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.-++.|++.+|+.++-+.+-.++|++
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~ 43 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLA 43 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 78899999999999999999999993
No 304
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=54.17 E-value=53 Score=20.67 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=39.8
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+++++...|+++|-+. .++++...-...||.....+ ...+.-+++|+.|.++-.
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEe
Confidence 4566666899998755 67888888888999887643 356677888888877643
No 305
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.03 E-value=18 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=30.9
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
...+.+.|++.+|=.++|+.|+..+++.+...+-.
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 36899999999999999999999999988877654
No 306
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=53.03 E-value=38 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHhHhCCCCCCcEEEe--cCcccCCCccHhh
Q 026940 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++....+|.. .|...+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 4799999999999999987777764 6777777654444
No 307
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=52.69 E-value=47 Score=21.61 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=26.6
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCC
Q 026940 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDG 53 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~ 53 (230)
.+..||+.+..+.++++.+.-+|.+ +|-.++|+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccH
Confidence 5899999999999999976667775 57777765
No 308
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=51.63 E-value=61 Score=21.18 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.8
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEE
Q 026940 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 120 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~ 120 (230)
++....+.++.++|..++-..+.++++++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 366788999999999999999999999864 455555
No 309
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=51.12 E-value=6.2 Score=33.40 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.9
Q ss_pred eccCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccH
Q 026940 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 83 ~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL 132 (230)
..+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+.++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 457777777777 77789999999999999999999999999999887443
No 310
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=50.61 E-value=32 Score=22.58 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=40.5
Q ss_pred eeEEEeeccccHHHHHHHhccccCC-CCCceEEE--EcC--eecCCCC---cccccCC--CCCCEEEEEEE
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAG--KQLEDGR---TLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~--~~g--~~L~d~~---tL~~~~i--~~~~~i~l~~~ 224 (230)
.-++.|.+..|..++-.++++++.+ .|+...|. -+| ..|.|+. .+..+=. ..-.+.|++.|
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~Pq~ika~L~~~~~~~~fhfvYr 85 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTYPQRIKAELHSRPQPNTFHFVYR 85 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccccceechhhccCCCCcceEEEEe
Confidence 3578899999999999999999997 67777765 355 4565543 3333222 23335566554
No 311
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=48.94 E-value=69 Score=27.76 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=51.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEec----Ccc--cCCCccHhhhccccCCceEEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~----g~~--L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|.+.++...|. ..+++.++++.+-|-.++-.... ..|+...+.-+ |.. +..++|+.+.|+..|..+++..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34556666664 78899999999999888877664 45666666532 221 3456799999999999998876
No 312
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.89 E-value=25 Score=23.21 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.1
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
...+.+.|++.++=.++|+.|+..+|+.+...+-.
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 46899999999999999999999999988877654
No 313
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=48.24 E-value=1.2e+02 Score=24.86 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=34.9
Q ss_pred ccHHHHHHHhcccc----CCCCCceEEEEcCeecC---CCCcccccCCCCCCEEE
Q 026940 173 DTIDNVKAKIQDKE----GIPPDQQRLIFAGKQLE---DGRTLADYNIQKESTLH 220 (230)
Q Consensus 173 ~tV~~lK~~i~~~~----~~~~~~q~L~~~g~~L~---d~~tL~~~~i~~~~~i~ 220 (230)
.+..|+-+.|+.+. ..|+...-+.|+|+.|. .+.-+.=-.++.|+.++
T Consensus 213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 57888999998875 46888888889999884 23334444567888875
No 314
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=47.98 E-value=24 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCC
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEGI 36 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi 36 (230)
..++++.++|+.++|..+.+...-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~ 25 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARK 25 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHh
Confidence 468899999999999998887653
No 315
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=47.34 E-value=93 Score=21.48 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.7
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026940 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
++|-..+|++..++|....+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 455568999999999999999999999999999876
No 316
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=46.91 E-value=36 Score=29.61 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=62.4
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEEEEEe
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l~~~~ 225 (230)
....+.++.++|..+.=.++.++-...++.-+...-++....+-|- |..++..| +++|.+..+-+...+.++-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567888888999999899999988999999988877777777664 77777632 679999999999998887775
Q ss_pred cC
Q 026940 226 RG 227 (230)
Q Consensus 226 ~g 227 (230)
++
T Consensus 393 r~ 394 (506)
T KOG2507|consen 393 RA 394 (506)
T ss_pred Cc
Confidence 53
No 317
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=46.63 E-value=43 Score=23.29 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=31.4
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.-...|++.+|++.+-..+....+++...|.+.|-.
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 345688999999999999999999999999888744
No 318
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=46.40 E-value=11 Score=31.88 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=42.3
Q ss_pred ccCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcc
Q 026940 160 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 160 ~~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL 208 (230)
.+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+.++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 45777777777 77899999999999999999999999999999887544
No 319
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=46.36 E-value=96 Score=21.37 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=39.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh----C--CCCC-ceEEEecccc--ccCCccccccc-----cccccceeeeee
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLR 72 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~----g--i~~~-~q~l~~~g~~--l~d~~tl~~~~-----i~~~~~i~l~~~ 72 (230)
..+++.+++++|+.++.+.+-.+. + -++. +-.|-..|+. |..+..|.+|. +..+..++|.+.
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 578999999999999988776651 1 2222 3445566643 55566666655 455556665543
No 320
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=46.00 E-value=34 Score=25.56 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~ 48 (230)
.+.+.+.|++++|=.++|..|+..+|+.+..-+-. ..|+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 47899999999999999999999999998665433 4443
No 321
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=91 Score=20.96 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=45.2
Q ss_pred EEEEeecceeEEEEeccCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcCe------ec-C--CCCcc--cccC
Q 026940 145 LVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK------QL-E--DGRTL--ADYN 212 (230)
Q Consensus 145 l~~~~~~~~~i~v~~~~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~------~L-~--d~~tL--~~~~ 212 (230)
+.++..++..+......-....+++. ...||.+|-.-+..++--.+++ -++.+|. .| . |..-| .+|.
T Consensus 7 vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ 85 (101)
T KOG4146|consen 7 VKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYP 85 (101)
T ss_pred EEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccC
Confidence 33444455444433222222333332 3579999988887765322222 3334441 12 1 23333 5799
Q ss_pred CCCCCEEEEEEEecCC
Q 026940 213 IQKESTLHLVLRLRGG 228 (230)
Q Consensus 213 i~~~~~i~l~~~~~gg 228 (230)
+++|+.|.+.-.+-||
T Consensus 86 ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 86 LEDGDHIVFISTLHGG 101 (101)
T ss_pred cccCCEEEEEEeccCC
Confidence 9999999988877776
No 322
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=45.39 E-value=57 Score=21.47 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=31.4
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe
Q 026940 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 45 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~ 45 (230)
.+|..+.+.++++.|-.+|.+++.+....+.. --.+.|
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw 45 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKW 45 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 47899999999999999999999999998763 224445
No 323
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=45.33 E-value=37 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.5
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g 199 (230)
....+.+.|++.+|=.++|+.+++.+|+.+.....+ ..|
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 346889999999999999999999999988877543 444
No 324
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=45.21 E-value=95 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHhHhCCCCCCcEEEecCcccC
Q 026940 95 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~ 127 (230)
-+.|+..|...+.+-+...|..|.|+|.|-...
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~ 171 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVP 171 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeeccccc
Confidence 356899999999998998999999999886553
No 325
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=45.09 E-value=70 Score=21.19 Aligned_cols=58 Identities=3% Similarity=0.151 Sum_probs=37.1
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCc-ccCCCccHhhhcc--ccCCceEEE
Q 026940 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGK-QLEDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~-~L~d~~tL~~~~i--~~~~~i~l~ 146 (230)
-.+-|+.+.|++++..-|.++.++.++.--.+| ++. ....+.++++.-- ..++.+++.
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~ 79 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVS 79 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEE
Confidence 345689999999999999999998877644444 443 2234455554321 334555444
No 326
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=44.86 E-value=56 Score=21.66 Aligned_cols=33 Identities=3% Similarity=0.262 Sum_probs=26.5
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.-|+.+.|++++...|.++.++.+++-.++|-+
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvn 52 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYIN 52 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC
Confidence 458999999999999999999998754444433
No 327
>CHL00030 rpl23 ribosomal protein L23
Probab=44.73 E-value=37 Score=22.90 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.8
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g 199 (230)
...+.+.|++++|=.++|++|+..+++.+....-. ..|
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 46899999999999999999999999887776543 444
No 328
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=42.51 E-value=90 Score=19.93 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhccccCCceEE
Q 026940 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
..+.|++......+-+-.++++.+|+..--++. .|.-.+..++..+--++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 457788888888888888899999998887775 566678889999888888888765
No 329
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=42.51 E-value=61 Score=20.83 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHhHhCCCCCCcEEE--ecCcccCCCccHhh
Q 026940 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++....++. -.|.+.+|+.-+..
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 379999999999999986666654 47888887765555
No 330
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.40 E-value=21 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.2
Q ss_pred CCccccccccccccceeee
Q 026940 52 DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 52 d~~tl~~~~i~~~~~i~l~ 70 (230)
++++|..|||.+.+.|.++
T Consensus 93 ~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 93 EDKTLKAAGIENETEISFF 111 (127)
T ss_pred ccchHHHhccCcchhhhhh
Confidence 4588999999988887654
No 331
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=40.95 E-value=72 Score=22.01 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
|+|-..+|.+..+.|..--+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 667788999999999999999999999999999998
No 332
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=39.36 E-value=46 Score=24.22 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=56.9
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccc------cCC-ccccccccccccceeeeeeecCceeeEEEeccCeeEeee
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL------EDG-RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l------~d~-~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~ 92 (230)
-.+..++|+.|+....+.-+.-.+.|+.-+. +++ ..|+. +.....+.+.-.|.+.-++.|...+|..+.-+
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~R--L~~~~NVTvRNDPDGRsRLNvNiFtGdviVTD 89 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLKR--LRSEPNVTVRNDPDGRSRLNVNIFTGDVIVTD 89 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHHH--HHhCCCCeeecCCCccceeeeeEecCCEEEec
Confidence 3588999999999999998888887864221 222 23332 45556677777787788888888888877766
Q ss_pred cCCCChHHHHH
Q 026940 93 VESSDTIDNVK 103 (230)
Q Consensus 93 v~~~~tV~~lK 103 (230)
+...-+++.++
T Consensus 90 FgD~~~lgNI~ 100 (153)
T PF08756_consen 90 FGDEPPLGNIQ 100 (153)
T ss_pred CCCCCCccccc
Confidence 65555555443
No 333
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.11 E-value=2e+02 Score=22.90 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=68.0
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC--CcE-EE--ecCcc----------cCCCccHhhhccccC
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQR-LI--FAGKQ----------LEDGRTLADYNIQKE 140 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~--~q~-L~--~~g~~----------L~d~~tL~~~~i~~~ 140 (230)
...++|-..=.+.-.+.+....|+.++- +..=|+.+. ... +. .+|+. +.....-.++-+++|
T Consensus 78 ~~~V~V~GeV~~PG~~~l~~~~tl~~ai---~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~~l~~~g~~~~ni~L~~G 154 (239)
T TIGR03028 78 GQQVSVLGQVNRPGRYPLETAGRVSDVL---ALAGGVTPDGADVITLVREREGKIFRKQIDFPALFNPGGDNENILVAGG 154 (239)
T ss_pred ceEEEEEEEecCCceEEcCCCCcHHHHH---HHcCCCCccCCCeEEEEEecCCeEEEEEEEHHHHHhcCCCcCCcEEcCC
Confidence 4455554332333345556667777644 433444432 111 11 23432 222233446778999
Q ss_pred CceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCC-CCCceEEEE---cCeecCCCCcccccCCCCC
Q 026940 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF---AGKQLEDGRTLADYNIQKE 216 (230)
Q Consensus 141 ~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~~---~g~~L~d~~tL~~~~i~~~ 216 (230)
+.|++... ..++|.-.-++.-.+.+.++.|+.++-.+.--.... .+....++. +|....-...+.+ -+++|
T Consensus 155 D~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~~g~~~~~~~~~~~-~l~~g 229 (239)
T TIGR03028 155 DIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDDKGAVEEVSGELGD-LVQPD 229 (239)
T ss_pred CEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECCCCcEEEEecCCCc-ccCCC
Confidence 99877532 134544333444556667788887665544333221 233344542 3322111111222 48999
Q ss_pred CEEEEEE
Q 026940 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~l~~ 223 (230)
|.|++--
T Consensus 230 Dii~V~~ 236 (239)
T TIGR03028 230 DVIYVRE 236 (239)
T ss_pred CEEEEeC
Confidence 9998753
No 334
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.24 E-value=1.1e+02 Score=19.94 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=32.4
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe
Q 026940 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
..+|.+..+.++..-|-+.|+++++..+.+|+..-.+.|
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 346777777777788999999999999999997766666
No 335
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=37.73 E-value=1.3e+02 Score=20.42 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=43.7
Q ss_pred eeEEEEec-cCceeEEEeeccccHHHHHHHhcccc--CC-C---CCceEEEEcCe--ecCCCCcccccC-----CCCCCE
Q 026940 153 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GI-P---PDQQRLIFAGK--QLEDGRTLADYN-----IQKEST 218 (230)
Q Consensus 153 ~~i~v~~~-~~~~~~i~v~~~~tV~~lK~~i~~~~--~~-~---~~~q~L~~~g~--~L~d~~tL~~~~-----i~~~~~ 218 (230)
+.|.|... ....+++.++.++|+.+|-+.+-.+. +. + .+.+.|.-.|. -|..+.+|.+|. ++.+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 44555555 45678999999999999977766652 22 1 22567776663 456778888883 456666
Q ss_pred EEEEEE
Q 026940 219 LHLVLR 224 (230)
Q Consensus 219 i~l~~~ 224 (230)
+.|.+.
T Consensus 97 ~~L~Lv 102 (106)
T PF00794_consen 97 PHLVLV 102 (106)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 666654
No 336
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=37.33 E-value=96 Score=26.16 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=45.9
Q ss_pred EEEeeccccHHHHHHHhcccc--------------C-CCCCceEEEEcCeecCCCCcccc---cCCCCCCEEEEEEEecC
Q 026940 166 TLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLAD---YNIQKESTLHLVLRLRG 227 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~--------------~-~~~~~q~L~~~g~~L~d~~tL~~---~~i~~~~~i~l~~~~~g 227 (230)
.+..+.-..|..++..|.++. . .|.+...|..+|.+|+.+.||+. +-.+.+..|.|.+|..+
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 344445557788888887777 2 34556788899999999988765 45688889999998764
No 337
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.27 E-value=1e+02 Score=19.99 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHhHhCCCCCCcEE--EecCcccCCCccHhhhccccCCce
Q 026940 97 DTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTL 143 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~tL~~~~i~~~~~i 143 (230)
.+..+|+.+.++.++++....+| .-.|..++|+.-+... .+++.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~l 67 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHF 67 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEE
Confidence 37999999999999998655555 4578888776655553 344544
No 338
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.61 E-value=60 Score=23.86 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=28.9
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
.+.+.+.|+..++=.++|+.|+..+++.+..-
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kV 113 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKV 113 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEE
Confidence 47899999999999999999999999988554
No 339
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=36.47 E-value=1.4e+02 Score=20.31 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=35.4
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhh--hCCCCC----ceEEEecccc--ccCCccccccc
Q 026940 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGKQ--LEDGRTLADYN 60 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~--~gi~~~----~q~l~~~g~~--l~d~~tl~~~~ 60 (230)
|.|... .+..+++.++.++|+.+|-..+-.+ .+..+. +-.|-..|+. |..+..|.+|.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 445444 4568999999999999998887776 222221 3345556643 55666676665
No 340
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=36.20 E-value=81 Score=20.50 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHhHhCCCCCCcEEE--ecCcccCCCccHhh
Q 026940 97 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++....++. -.|.+.+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 369999999999999976555555 57888877765555
No 341
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=63 Score=27.37 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEEecC---cccC--CCccHhhhccccCCc
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 142 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~~g---~~L~--d~~tL~~~~i~~~~~ 142 (230)
.|.|+.++|+.....+...++|.-|-.-.+... |.+-+..+|+.+- +.|. .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488999999988888888899988877766655 4666677887554 4453 367999999998764
No 342
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=33.93 E-value=1.3e+02 Score=19.29 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=46.5
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.|.+......+-.-.++++.+|+...-++ -.|.-++..++-..+=++.|+.+.+..|.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 4578888888888888889999998876666 55666788888888888888888776543
No 343
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=32.00 E-value=1e+02 Score=19.77 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.0
Q ss_pred CEEEEEccCCc---EEEEEecCCCcHHHHHHHhhhhh
Q 026940 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
|+||-|..++. .-++.+..++||.|+-.+|+...
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 46777776542 45678899999999999999754
No 344
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=31.95 E-value=33 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=38.5
Q ss_pred eEEEeeccccHHHHHHHhccccC-C-CCCceEEEEcCeecCCCCcccc
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLAD 210 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~-~-~~~~q~L~~~g~~L~d~~tL~~ 210 (230)
-.+.++..+||.+||.-+..+.+ . +..+.-+++++..|.+..||.+
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~ 213 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKD 213 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhh
Confidence 46778899999999999999998 4 4455678899999999999985
No 345
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=31.87 E-value=2.1e+02 Score=21.11 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=66.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee----e-cCceeeEEEeccC
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR----L-RGGMQIFVKTLTG 86 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~----~-~~~~~v~v~~~~g 86 (230)
.|+-++-..+|.+.|-.++++..||- |+..+|..|...- .||...|.-+....+ . ...+.+.|+ -|
T Consensus 4 IfP~R~L~~eTtEklLN~l~~i~gI~----R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~--VG 74 (150)
T TIGR03260 4 IFPHRLLKAETTEKLLNKLYDLDGIL----RVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQ--VG 74 (150)
T ss_pred EechhhCCHHHHHHHHHHhhccCCEE----EEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEE--Ee
Confidence 45556667789999999999888875 8899998887542 234333322211111 1 112333332 24
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhcc
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i 137 (230)
+ +.+++...+.+.++++...+.+.++ ..+ ..|+-+....|+.||--
T Consensus 75 r-I~le~~~~~~i~~I~eiC~e~~pF~---y~i-~~g~f~r~~~TvtDY~K 120 (150)
T TIGR03260 75 R-IILELEDEDIVEEIEEICKEMLPFG---YEV-RVGKFLRTKPTVTDYIK 120 (150)
T ss_pred E-EEEEecCHHHHHHHHHHHHhhCCCc---eEe-eeeeEeecCCchhhhhh
Confidence 3 5566666677777776655554432 222 34666777788888753
No 346
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=31.71 E-value=1.2e+02 Score=18.77 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=23.9
Q ss_pred ccHhhhccccCCceEEEEEeecceeEEEEeccCceeEE
Q 026940 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 167 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i 167 (230)
..|.+.|+.+|+.+.+.-+.+.+-.+.+.. +++.+.+
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~-~~~~i~L 62 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKV-DGSRIAL 62 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 468999999999999886655444455553 2444443
No 347
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.10 E-value=1.1e+02 Score=20.04 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHhHhCCCCCC--cEE--EecCcccCCCccHhhh
Q 026940 97 DTIDNVKAKIQDKEGIPPDQ--QRL--IFAGKQLEDGRTLADY 135 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~~--q~L--~~~g~~L~d~~tL~~~ 135 (230)
.+..+|+.+.++.+.++... .+| .-.|.+.+|+.-+...
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL 63 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL 63 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC
Confidence 36999999999999998432 444 4578888777655553
No 348
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=29.96 E-value=81 Score=23.57 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=32.4
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g 199 (230)
...|.+.|++.+|=.++|..|+..+|+.+...+-. ..|
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 35799999999999999999999999988877654 455
No 349
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=29.75 E-value=48 Score=28.04 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=49.4
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhcccc-CCCCCceEEEEcC---eecC--CCCcccccCCCCCCE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 218 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L~~~g---~~L~--d~~tL~~~~i~~~~~ 218 (230)
.|.|+.++|+.....+-.+++|.-|-.-+.... |-+-..+.|..+- +.|+ .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488899999887777777888888877766655 4566778888544 5553 467999999998876
No 350
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=29.69 E-value=23 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=13.5
Q ss_pred cHHHHHHHhhhhhCCCCC
Q 026940 22 TIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~ 39 (230)
|++++.+.|.+.+|++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~ 18 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVE 18 (70)
T ss_dssp -HHHHHHHHHHHTT--HH
T ss_pred CHHHHHHHHHHHHCCCHH
Confidence 788999999999999984
No 351
>PRK08453 fliD flagellar capping protein; Validated
Probab=29.60 E-value=1.7e+02 Score=27.43 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=51.2
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhC--C--------CCCCcEEEecCcccC-C-----CccHhhhccccCCceEEEE
Q 026940 84 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLE-D-----GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i--------~~~~q~L~~~g~~L~-d-----~~tL~~~~i~~~~~i~l~~ 147 (230)
.+|+.+.+++....|+.+|..+|-...+ + .....+|+..+...- + ..+|.+..+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4699999999999999999999984321 1 112466666655442 2 2344444444444211222
Q ss_pred EeecceeEEEEeccCceeEEEe
Q 026940 148 RLRGGMQIFVKTLTGKTITLEV 169 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v 169 (230)
.-.+...|.++..+|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2234467777777776655444
No 352
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=29.21 E-value=1.1e+02 Score=18.39 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=32.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl 56 (230)
|+|...+|+... ++.+.|+.|+=..|....+-.. ---..+|+..+-+..|
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~~~L 50 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLDHPL 50 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETTSBB
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCCCCc
Confidence 455567788766 8889999999999988765321 1222567555444333
No 353
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=27.96 E-value=56 Score=21.36 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=32.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCC---CceEEE-ecccccc
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLE 51 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~l~-~~g~~l~ 51 (230)
+|+.+.+.++.++++--+-++...+.|.++ ..+++. ++|..+.
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 789999999999999999999999999764 333444 4554443
No 354
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.80 E-value=1.5e+02 Score=19.45 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHhHhCCCCC-CcEEEecCcccCCCccHhhhccccCCce
Q 026940 97 DTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTL 143 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i 143 (230)
.+..+|+.+.++...++.. ...|.-.|..++++.-+... .+++.+
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tL--pdnT~l 66 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELL--EDDTCL 66 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhC--CCCCEE
Confidence 3699999999999998633 33344578888776655553 355544
No 355
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=27.69 E-value=1.8e+02 Score=18.91 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.0
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCceEEEe
Q 026940 18 ESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
..+.++.+|++.++..++++..+-.+++
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~~ 74 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELYA 74 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4457999999999999999887666643
No 356
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=27.61 E-value=53 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.2
Q ss_pred cccCCCccHhhhccccCCceEEEEEee
Q 026940 124 KQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 124 ~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+..+|+.+|+..+++-|+.+.+.+.++
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 445789999999999999999988765
No 357
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=27.24 E-value=70 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.0
Q ss_pred eecCCCCcccccCCCCCCEEEEEEEec
Q 026940 200 KQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 200 ~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
+-.+|++||+..+++-||-|.+.+...
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 455899999999999999999888743
No 358
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=26.89 E-value=1.3e+02 Score=18.43 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=12.3
Q ss_pred cccCCCCCceEEEEcCeecC
Q 026940 184 DKEGIPPDQQRLIFAGKQLE 203 (230)
Q Consensus 184 ~~~~~~~~~q~L~~~g~~L~ 203 (230)
...|.|+....|+.+|..+.
T Consensus 6 ~v~g~P~p~v~W~k~~~~l~ 25 (76)
T cd05736 6 HAEGIPLPRLTWLKNGMDIT 25 (76)
T ss_pred EeeecCCCEEEEEECCEECC
Confidence 34466666667766666654
No 359
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=26.62 E-value=2.8e+02 Score=20.81 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=36.8
Q ss_pred ccccccccccccceeeeeeecCceeeEEEeccCeeEeee--cCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCcc
Q 026940 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 54 ~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~--v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~t 131 (230)
...+.|.+.....+.-++..++..-+.|...+|+...+- +..-..-.++...+++....--..... -....-.+..+
T Consensus 64 eLFA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~-~~~~~~~~~~p 142 (160)
T PF07933_consen 64 ELFAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEA-EEQSQAAESQP 142 (160)
T ss_dssp SS-EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------
T ss_pred ceEEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhh-hhhhcccCCCC
Confidence 456778888776677777777788888988888776554 455556788899998887642111111 11111234557
Q ss_pred HhhhccccCCceEEEE
Q 026940 132 LADYNIQKESTLHLVL 147 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~ 147 (230)
-.+|.+++|.+|++.+
T Consensus 143 ~~D~sLKeGetI~ini 158 (160)
T PF07933_consen 143 KKDYSLKEGETIKINI 158 (160)
T ss_dssp ----------------
T ss_pred ccCCcCCCCCEEEEec
Confidence 7899999999987754
No 360
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.43 E-value=41 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=10.8
Q ss_pred CCcccccCCCCCCEEEE
Q 026940 205 GRTLADYNIQKESTLHL 221 (230)
Q Consensus 205 ~~tL~~~~i~~~~~i~l 221 (230)
.+.|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 35688889999999865
No 361
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.29 E-value=1.7e+02 Score=22.72 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=27.9
Q ss_pred cccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC
Q 026940 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (230)
Q Consensus 63 ~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ 111 (230)
.|.++|++-.--+.-.|... ..+.+.+++|..+|.++|.....
T Consensus 132 sG~TVH~V~e~vD~GpII~Q------~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 132 SGCTVHFVTEGVDTGPIIAQ------AAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred cCcEEEEEccCCCCCCeEEE------EeeeecCCCCHHHHHHHHHHHHH
Confidence 66677766543222222221 35788899999999999987653
No 362
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=24.80 E-value=2.8e+02 Score=20.27 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=57.3
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCc------------cHhhhccccCCceEEEEEeecceeEEEE
Q 026940 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR------------TLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~------------tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+..-|+.-|..|-.+.+-.-.+..+.-.+.++|+.|++.. -|..|.+.+|+.=...-...++..+.+.
T Consensus 19 vt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~ 98 (149)
T PF10787_consen 19 VTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVID 98 (149)
T ss_pred eecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEE
Confidence 3344556677777776666667777788889999987643 3566777777764333344566777888
Q ss_pred eccCce-eEEEeec-cccHHHHHHH
Q 026940 159 TLTGKT-ITLEVES-SDTIDNVKAK 181 (230)
Q Consensus 159 ~~~~~~-~~i~v~~-~~tV~~lK~~ 181 (230)
+..|+. ..+.+-+ ++-|.-+|+.
T Consensus 99 tKkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 99 TKKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred eccCcceeEEEEEecccHHHHHHHh
Confidence 776654 4444433 3455555553
No 363
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=24.18 E-value=43 Score=20.17 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.2
Q ss_pred cHHHHHHHhhhhhCCCCCc
Q 026940 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~ 40 (230)
|+.++.+.|.+.+|++++.
T Consensus 1 ~~~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPED 19 (60)
T ss_pred CHHHHHHHHHHHhCCCHHH
Confidence 5788999999999999853
No 364
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.84 E-value=2.6e+02 Score=19.49 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.3
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|+-|.+.-+++ +-.+.|++.+|..++-+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67778777665 45689999999999999999998844
No 365
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=23.59 E-value=2e+02 Score=18.14 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=28.2
Q ss_pred HhHhCCCCCCcEEEecCcccCCCccHhhh--ccccCCceEEEE
Q 026940 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL 147 (230)
Q Consensus 107 ~~~~~i~~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~~ 147 (230)
+.+.|+.+...-+..+|....+...+..+ ....|+++.+.+
T Consensus 27 A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v 69 (82)
T PF13180_consen 27 AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTV 69 (82)
T ss_dssp HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEE
T ss_pred HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEE
Confidence 34567899999999999999776555544 346677766554
No 366
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.47 E-value=52 Score=20.71 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.8
Q ss_pred CCcccccCCCCCCEEEEE
Q 026940 205 GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 205 ~~tL~~~~i~~~~~i~l~ 222 (230)
...|...|+++|++|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 457899999999999763
No 367
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.43 E-value=2.1e+02 Score=18.37 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=42.6
Q ss_pred EEeeccccHHHHHHHhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+.++.+...-.+-+--++++.+|+....++ -.|.-....++-...-++.|+.+.+.-|-+=|
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 345555555444445567778888877766 45555566677777788999999998876544
No 368
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=23.37 E-value=76 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|+|.+.. +|..+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7788855 5899999999999988887743
No 369
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.16 E-value=1.9e+02 Score=18.82 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHhHhCCCCC-CcEEEecCcccCCCccHhh
Q 026940 97 DTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++.. ...|.-.|.+++|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh
Confidence 3699999999999999532 2334457888877665555
No 370
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=22.86 E-value=1.3e+02 Score=27.07 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=38.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
++.|...+|++|.|+..... .-.+.-|.+.++|+.++... |..-.|..|.+|.+.+-.
T Consensus 443 ~~~i~l~~g~~~~I~a~n~s-------------~~n~YIqsv~lNGk~~~~~~-i~~~~i~~GG~L~f~mg~ 500 (502)
T PF07971_consen 443 KVTIHLGNGKTFTIEAKNNS-------------AENIYIQSVTLNGKPLTRPW-ITHDDIMNGGTLEFEMGD 500 (502)
T ss_dssp EEEEE-CCC-EEEEE-TT-B-------------TTB-EEEEEEETTEEE-SSE-EEHHHHHC-EEEEEEEES
T ss_pred eEEEEcCCCCEEEEEecCCC-------------CCCceEeEEEECCEECcCCE-EeHHHHhCCCEEEEEeCC
Confidence 46777778999999886554 11255689999999997665 777778888888877643
No 371
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=22.35 E-value=1.9e+02 Score=20.26 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+.|++...+|....+++.++.|+.+.=. ..|++.
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~----~~gi~i 34 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAH----ENDIEL 34 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHH----HcCCCC
Confidence 4577777889999999999999988755 455553
No 372
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.31 E-value=4e+02 Score=21.12 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=66.7
Q ss_pred cccccccceeeeeeecCceeeEEE-eccCee-Eee--ecC-CCChHHHHHHHHHhHhC---CCCCCcEEEecCcccCCCc
Q 026940 59 YNIQKESTLHLVLRLRGGMQIFVK-TLTGKT-ITL--EVE-SSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGR 130 (230)
Q Consensus 59 ~~i~~~~~i~l~~~~~~~~~v~v~-~~~g~~-~~i--~v~-~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~ 130 (230)
|-|..|+.+.+.+--.+.+...+. ..+|.. +++ .+. ...|+.++.+.|..+.. +-.+.
T Consensus 2 Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~~~~~~p-------------- 67 (239)
T TIGR03028 2 YRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKGGFVKQP-------------- 67 (239)
T ss_pred cEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhcCcccCC--------------
Confidence 556677776665543333322222 234432 121 233 46799999999988763 11111
Q ss_pred cHhhhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC--c-eEE--EEcCee----
Q 026940 131 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-QRL--IFAGKQ---- 201 (230)
Q Consensus 131 tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~--~-q~L--~~~g~~---- 201 (230)
.+.+.+....+..++|.-.-.+.-.+.+....|+.++-.+. =|+.+. . ..+ ..+|+.
T Consensus 68 -----------~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~A---GG~~~~~~~~~~i~~~~~g~~~~~~ 133 (239)
T TIGR03028 68 -----------QVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALA---GGVTPDGADVITLVREREGKIFRKQ 133 (239)
T ss_pred -----------EEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHc---CCCCccCCCeEEEEEecCCeEEEEE
Confidence 12233333233445544333333345566667777755433 233221 1 112 234433
Q ss_pred ------cCCCCcccccCCCCCCEEEEE
Q 026940 202 ------LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 202 ------L~d~~tL~~~~i~~~~~i~l~ 222 (230)
+.....-.++-+++||.|++.
T Consensus 134 idl~~l~~~g~~~~ni~L~~GD~I~V~ 160 (239)
T TIGR03028 134 IDFPALFNPGGDNENILVAGGDIIYVD 160 (239)
T ss_pred EEHHHHHhcCCCcCCcEEcCCCEEEEc
Confidence 222334456778999998763
No 373
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=22.08 E-value=1.5e+02 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.2
Q ss_pred ecCceeeEEEeccCeeEeeecCCCChHHHHH
Q 026940 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVK 103 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK 103 (230)
+++.++|++...+|..+.+++....|+.+.-
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal 62 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHAL 62 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHHH
Confidence 4567899999999999999999999987753
No 374
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=22.06 E-value=1.7e+02 Score=18.83 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 175 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 175 V~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
-++.+ .+-+++++.+++. .+.+.++--...||.++|+.|.+.-+-.
T Consensus 17 ~eE~~-~lL~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~S~ 62 (74)
T PF01191_consen 17 EEEKK-ELLKKYNIKPEQL-----PKILSSDPVARYLGAKPGDVVKIIRKSE 62 (74)
T ss_dssp HHHHH-HHHHHTT--TTCS-----SEEETTSHHHHHTT--TTSEEEEEEEET
T ss_pred HHHHH-HHHHHhCCChhhC-----CcccccChhhhhcCCCCCCEEEEEecCC
Confidence 33433 4445567766654 3445555567788999999998877644
No 375
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.75 E-value=1.1e+02 Score=22.53 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=30.6
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
..++.+.|+..++=.++|+.|+..+++.+....-.
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 46899999999999999999999999988776543
No 376
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=21.69 E-value=1.1e+02 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.6
Q ss_pred CcccccCCCCCCEEEEEEEecCC
Q 026940 206 RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 206 ~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.+.|+.+|+.|.+..+..-|
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP~g 46 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAPLG 46 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECCCC
Confidence 57888999999999988776533
No 377
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=21.30 E-value=1.6e+02 Score=26.57 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=45.9
Q ss_pred cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhc
Q 026940 57 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
.-|.+.+|+..+++-.|.-. +++|+..+|+++.|...... .-.+--|.+.+||+.+.... |..-.
T Consensus 423 G~YPv~pg~~~y~igsP~F~-~~~i~l~~g~~~~I~a~n~s-------------~~n~YIqsv~lNGk~~~~~~-i~~~~ 487 (502)
T PF07971_consen 423 GFYPVNPGSPEYVIGSPLFD-KVTIHLGNGKTFTIEAKNNS-------------AENIYIQSVTLNGKPLTRPW-ITHDD 487 (502)
T ss_dssp TEE-SSTTSSEEEE---SSS-EEEEE-CCC-EEEEE-TT-B-------------TTB-EEEEEEETTEEE-SSE-EEHHH
T ss_pred CCCCCCCCCceEEEcCCccC-eEEEEcCCCCEEEEEecCCC-------------CCCceEeEEEECCEECcCCE-EeHHH
Confidence 34556777777776665433 66777788999999877654 01123478889999997765 66666
Q ss_pred cccCCceEEEEE
Q 026940 137 IQKESTLHLVLR 148 (230)
Q Consensus 137 i~~~~~i~l~~~ 148 (230)
|..|.+|.+.+.
T Consensus 488 i~~GG~L~f~mg 499 (502)
T PF07971_consen 488 IMNGGTLEFEMG 499 (502)
T ss_dssp HHC-EEEEEEEE
T ss_pred HhCCCEEEEEeC
Confidence 788999887654
No 378
>PRK05883 acyl carrier protein; Validated
Probab=21.17 E-value=23 Score=23.70 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=48.5
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCC
Q 026940 18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 96 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~ 96 (230)
...+--..|++.|.+..+++++ .+.++.++ ..+|+.+=+.+.+.......+.|.+.. =++...
T Consensus 11 ~~~~I~~~l~~iia~~l~v~~~---------~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~-------ee~~~~ 74 (91)
T PRK05883 11 SPSTVSATLLSILRDDLNVDLT---------RVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSE-------EDLLSC 74 (91)
T ss_pred CHHHHHHHHHHHHHHHhCCChh---------hCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCH-------HHHHhC
Confidence 3344567788889999999885 35666667 778887766666555443322222211 012334
Q ss_pred ChHHHHHHHHHhHh
Q 026940 97 DTIDNVKAKIQDKE 110 (230)
Q Consensus 97 ~tV~~lK~~i~~~~ 110 (230)
.||++|...|..+.
T Consensus 75 ~TV~dl~~~v~~~~ 88 (91)
T PRK05883 75 DTVGDLEAAIAAKV 88 (91)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999988753
No 379
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.89 E-value=2.5e+02 Score=18.16 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+|.... +|....++++..-...|+.+++...+|-+. -|+|-.
T Consensus 2 RiKfE~-~gEKRIi~f~RPvkf~dl~~kv~~afGq~m---dl~ytn 43 (79)
T cd06405 2 RIKFEH-NGEKRIIQFPRPVKFKDLQQKVTTAFGQPM---DLHYTN 43 (79)
T ss_pred eEEEEe-cCceEEEecCCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 455544 589999999999999999999999999875 355533
No 380
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=20.81 E-value=88 Score=18.94 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=20.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~ 32 (230)
|.|.+++.+|..|.++...-.--.-|+..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67899999999999985433333334444543
No 381
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=20.26 E-value=1.5e+02 Score=19.35 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=30.3
Q ss_pred cHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 174 tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
|-++.+ .+-+++++.+.+. .+.+.++--..+||.+.|+.|.+.-+-.
T Consensus 19 s~eE~~-~lL~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~S~ 65 (79)
T PRK09570 19 SEEEAK-KLLKEYGIKPEQL-----PKIKASDPVVKAIGAKPGDVIKIVRKSP 65 (79)
T ss_pred CHHHHH-HHHHHcCCCHHHC-----CceeccChhhhhcCCCCCCEEEEEECCC
Confidence 334443 4555666766654 3345555567788999999998876633
No 382
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=20.06 E-value=1.9e+02 Score=19.13 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=10.8
Q ss_pred CCCCCceEEEEcCeecCCC
Q 026940 187 GIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 187 ~~~~~~q~L~~~g~~L~d~ 205 (230)
|-|+-...|..+|+.|.++
T Consensus 26 G~p~p~v~W~kdg~~l~~~ 44 (98)
T cd05762 26 GTQPITCTWMKFRKQIQEG 44 (98)
T ss_pred ccCCCceEEEECCEEecCC
Confidence 4555556666666666533
Done!