Query 026940
Match_columns 230
No_of_seqs 355 out of 2476
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.5E-38 5.2E-43 238.5 17.9 153 77-229 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 3.1E-38 1.1E-42 236.8 17.3 152 1-152 3-157 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 2.6E-38 8.8E-43 240.0 16.3 155 74-228 18-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1.3E-37 4.3E-42 236.2 15.4 152 1-152 21-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 1.3E-36 4.3E-41 226.4 17.7 152 77-228 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 2.4E-36 8.3E-41 224.9 17.2 152 1-152 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 1.5E-20 5.3E-25 123.9 9.7 77 151-227 3-79 (79)
8 4fbj_B NEDD8; effector-HOST ta 99.8 9.9E-21 3.4E-25 127.3 8.2 77 153-229 1-77 (88)
9 4eew_A Large proline-rich prot 99.8 2.8E-20 9.6E-25 125.2 9.1 88 136-224 1-88 (88)
10 2kdi_A Ubiquitin, vacuolar pro 99.8 1.7E-21 5.7E-26 137.1 3.2 101 1-101 10-113 (114)
11 3plu_A Ubiquitin-like modifier 99.8 4.4E-20 1.5E-24 122.7 9.4 77 147-223 16-92 (93)
12 3phx_B Ubiquitin-like protein 99.8 3.3E-20 1.1E-24 122.2 8.8 74 1-74 5-78 (79)
13 1sif_A Ubiquitin; hydrophobic 99.8 4E-20 1.4E-24 124.3 8.2 80 151-230 8-87 (88)
14 2kk8_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 123.2 7.8 73 1-73 11-84 (84)
15 3plu_A Ubiquitin-like modifier 99.8 4.8E-20 1.6E-24 122.5 8.3 70 1-70 22-91 (93)
16 3dbh_I NEDD8; cell cycle, acti 99.8 4.5E-20 1.5E-24 124.2 8.1 78 151-228 11-88 (88)
17 4fbj_B NEDD8; effector-HOST ta 99.8 6E-20 2.1E-24 123.4 8.5 76 1-76 1-76 (88)
18 1ndd_A NEDD8, protein (ubiquit 99.8 8.4E-20 2.9E-24 119.3 8.8 76 153-228 1-76 (76)
19 1yx5_B Ubiquitin; proteasome, 99.8 9.2E-20 3.2E-24 125.1 9.0 92 1-92 1-92 (98)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 8E-20 2.7E-24 122.1 8.5 78 152-229 3-80 (85)
21 4hcn_B Polyubiquitin, ubiquiti 99.8 7.7E-20 2.6E-24 125.4 8.3 78 151-228 21-98 (98)
22 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.2E-19 3.9E-24 124.1 9.1 78 152-229 1-78 (96)
23 3a9j_A Ubiquitin; protein comp 99.8 1.6E-19 5.6E-24 117.9 9.3 76 153-228 1-76 (76)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.7E-19 5.8E-24 121.0 9.4 80 150-229 5-84 (87)
25 2uyz_B Small ubiquitin-related 99.8 1E-19 3.6E-24 119.9 8.0 77 152-228 3-79 (79)
26 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.9E-19 6.3E-24 120.3 8.9 78 152-229 3-80 (85)
27 2hj8_A Interferon-induced 17 k 99.8 1.3E-19 4.4E-24 121.8 7.7 79 151-229 3-81 (88)
28 2kdi_A Ubiquitin, vacuolar pro 99.8 9.4E-21 3.2E-25 133.3 1.9 104 74-177 7-113 (114)
29 1wy8_A NP95-like ring finger p 99.8 4.4E-19 1.5E-23 119.5 9.8 80 151-230 6-87 (89)
30 4eew_A Large proline-rich prot 99.8 1.9E-19 6.4E-24 121.1 7.6 88 60-148 1-88 (88)
31 1wyw_B Ubiquitin-like protein 99.8 2.4E-19 8.1E-24 122.6 8.3 79 150-228 19-97 (97)
32 1ndd_A NEDD8, protein (ubiquit 99.8 4.1E-19 1.4E-23 116.0 8.9 74 1-74 1-74 (76)
33 2lxa_A Ubiquitin-like protein 99.8 1.4E-19 4.7E-24 120.6 6.5 73 1-73 2-78 (87)
34 2kan_A Uncharacterized protein 99.8 3.9E-19 1.3E-23 120.7 8.8 79 150-229 13-92 (94)
35 3vdz_A Ubiquitin-40S ribosomal 99.8 4.7E-19 1.6E-23 124.1 9.4 77 152-228 35-111 (111)
36 3v6c_B Ubiquitin; structural g 99.8 3.4E-19 1.2E-23 120.5 8.3 73 1-73 18-90 (91)
37 2ojr_A Ubiquitin; lanthide-bin 99.8 2.7E-19 9.1E-24 125.4 7.9 78 151-228 34-111 (111)
38 1uh6_A Ubiquitin-like 5; beta- 99.8 2E-19 6.8E-24 121.9 6.6 71 1-71 29-99 (100)
39 1sif_A Ubiquitin; hydrophobic 99.8 4.7E-19 1.6E-23 119.0 8.4 75 1-75 10-84 (88)
40 2l7r_A Ubiquitin-like protein 99.8 2.8E-19 9.5E-24 121.3 7.2 78 149-228 16-93 (93)
41 3dbh_I NEDD8; cell cycle, acti 99.8 4.5E-19 1.5E-23 119.2 8.1 75 1-75 13-87 (88)
42 2faz_A Ubiquitin-like containi 99.8 4.4E-19 1.5E-23 116.5 7.8 73 1-73 3-77 (78)
43 3a9j_A Ubiquitin; protein comp 99.8 8E-19 2.7E-23 114.6 9.0 75 1-75 1-75 (76)
44 2hj8_A Interferon-induced 17 k 99.8 4.1E-19 1.4E-23 119.4 7.8 74 1-74 5-78 (88)
45 3v6c_B Ubiquitin; structural g 99.8 6.3E-19 2.1E-23 119.2 8.7 76 151-226 16-91 (91)
46 4hcn_B Polyubiquitin, ubiquiti 99.8 5.9E-19 2E-23 120.9 8.6 75 1-75 23-97 (98)
47 4dwf_A HLA-B-associated transc 99.8 6E-19 2.1E-23 119.1 8.5 73 1-74 6-78 (90)
48 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 9.8E-19 3.4E-23 119.5 9.0 79 1-79 2-80 (96)
49 3n3k_B Ubiquitin; hydrolase, p 99.8 6.8E-19 2.3E-23 117.5 8.0 75 1-75 4-78 (85)
50 1wju_A NEDD8 ultimate buster-1 99.8 1.1E-18 3.9E-23 118.2 8.7 75 154-229 17-95 (100)
51 4dwf_A HLA-B-associated transc 99.8 1.7E-18 5.8E-23 116.9 9.4 77 151-228 4-80 (90)
52 2uyz_B Small ubiquitin-related 99.8 7E-19 2.4E-23 115.8 7.2 75 1-75 4-78 (79)
53 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.4E-18 4.8E-23 116.0 8.5 75 1-75 4-78 (85)
54 2dzi_A Ubiquitin-like protein 99.8 1.7E-18 6E-23 114.4 8.8 73 1-73 8-80 (81)
55 2faz_A Ubiquitin-like containi 99.8 2.4E-18 8.1E-23 113.0 9.3 75 151-225 1-77 (78)
56 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.3E-18 4.5E-23 116.7 8.2 75 1-75 8-82 (87)
57 1wgd_A Homocysteine-responsive 99.8 1.4E-18 4.9E-23 117.9 7.9 80 151-230 6-91 (93)
58 2kk8_A Uncharacterized protein 99.8 1.5E-18 5.2E-23 115.3 7.9 74 151-224 9-83 (84)
59 3l0w_B Monoubiquitinated proli 99.8 2.4E-18 8.1E-23 129.1 9.6 124 1-128 1-128 (169)
60 2kan_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 117.5 7.9 74 1-75 16-90 (94)
61 1uel_A HHR23B, UV excision rep 99.8 3.6E-18 1.2E-22 116.4 9.5 73 1-73 1-76 (95)
62 1yx5_B Ubiquitin; proteasome, 99.8 2.1E-18 7.3E-23 118.2 8.4 91 77-167 1-91 (98)
63 2fnj_B Transcription elongatio 99.8 1.9E-18 6.3E-23 120.4 8.1 77 153-230 1-85 (118)
64 1uh6_A Ubiquitin-like 5; beta- 99.8 1.5E-18 5E-23 117.7 7.3 71 153-223 29-99 (100)
65 4ajy_B Transcription elongatio 99.8 2.9E-18 1E-22 118.9 8.9 77 153-230 1-85 (118)
66 3m62_B UV excision repair prot 99.8 1.2E-18 4E-23 121.0 6.8 74 1-74 2-75 (106)
67 1wy8_A NP95-like ring finger p 99.8 2.8E-18 9.5E-23 115.6 8.5 76 1-76 8-85 (89)
68 2wyq_A HHR23A, UV excision rep 99.8 3.2E-18 1.1E-22 114.3 8.6 74 1-74 6-82 (85)
69 1we6_A Splicing factor, putati 99.8 2E-18 7E-23 120.9 7.9 80 150-229 25-108 (111)
70 3vdz_A Ubiquitin-40S ribosomal 99.8 2.9E-18 9.8E-23 120.0 8.5 75 1-75 36-110 (111)
71 4ajy_B Transcription elongatio 99.8 2.6E-18 8.8E-23 119.2 8.0 73 1-73 1-81 (118)
72 1wyw_B Ubiquitin-like protein 99.7 2.2E-18 7.6E-23 117.8 7.4 75 1-75 22-96 (97)
73 4a20_A Ubiquitin-like protein 99.7 2.4E-18 8.3E-23 117.1 7.5 73 1-73 20-96 (98)
74 3l0w_B Monoubiquitinated proli 99.7 4.6E-18 1.6E-22 127.6 9.5 77 153-229 1-77 (169)
75 2bwf_A Ubiquitin-like protein 99.7 4.9E-18 1.7E-22 111.2 8.3 72 1-73 5-76 (77)
76 2l7r_A Ubiquitin-like protein 99.7 3.5E-18 1.2E-22 115.9 7.8 73 1-75 20-92 (93)
77 3q3f_A Ribonuclease/ubiquitin 99.7 2.4E-18 8.2E-23 130.5 7.6 82 1-82 106-187 (189)
78 3b1l_X E3 ubiquitin-protein li 99.6 9.8E-20 3.4E-24 119.1 0.0 74 1-74 1-74 (76)
79 1we7_A SF3A1 protein; structur 99.7 8.2E-18 2.8E-22 118.5 9.3 70 161-230 44-113 (115)
80 2dzi_A Ubiquitin-like protein 99.7 6.7E-18 2.3E-22 111.6 8.2 76 151-226 6-81 (81)
81 2fnj_B Transcription elongatio 99.7 4.6E-18 1.6E-22 118.5 7.5 72 1-72 1-80 (118)
82 3q3f_A Ribonuclease/ubiquitin 99.7 6.6E-18 2.3E-22 128.1 8.9 82 148-229 101-182 (189)
83 1uel_A HHR23B, UV excision rep 99.7 1.6E-17 5.6E-22 113.1 9.9 76 153-228 1-79 (95)
84 3b1l_X E3 ubiquitin-protein li 99.6 2.1E-19 7.3E-24 117.5 0.0 75 153-227 1-75 (76)
85 1yqb_A Ubiquilin 3; structural 99.7 1.1E-17 3.6E-22 114.9 8.4 78 151-229 21-98 (100)
86 2wyq_A HHR23A, UV excision rep 99.7 2.2E-17 7.7E-22 110.1 9.8 77 150-226 3-82 (85)
87 1v2y_A 3300001G02RIK protein; 99.7 2.2E-18 7.5E-23 118.3 4.9 77 152-228 7-99 (105)
88 3m63_B Ubiquitin domain-contai 99.7 2.1E-18 7.3E-23 118.6 4.7 93 129-224 7-99 (101)
89 4a20_A Ubiquitin-like protein 99.7 2.5E-17 8.4E-22 112.1 9.7 76 150-225 17-96 (98)
90 2lxa_A Ubiquitin-like protein 99.7 8E-18 2.7E-22 112.0 7.1 73 153-225 2-78 (87)
91 1wx8_A Riken cDNA 4931431F19; 99.7 5.5E-18 1.9E-22 115.7 6.3 78 151-229 16-93 (96)
92 1ttn_A DC-UBP, dendritic cell- 99.7 9.5E-18 3.3E-22 116.5 7.5 74 1-74 24-97 (106)
93 1v2y_A 3300001G02RIK protein; 99.7 3.7E-18 1.3E-22 117.1 5.2 75 1-75 8-98 (105)
94 2ojr_A Ubiquitin; lanthide-bin 99.7 2.2E-17 7.6E-22 115.6 9.1 93 60-152 11-111 (111)
95 3m62_B UV excision repair prot 99.7 1.1E-17 3.8E-22 116.1 7.4 74 153-226 2-75 (106)
96 1yqb_A Ubiquilin 3; structural 99.7 1.4E-17 4.8E-22 114.3 7.7 74 1-75 23-96 (100)
97 1ttn_A DC-UBP, dendritic cell- 99.7 2.5E-17 8.5E-22 114.4 8.7 79 151-229 22-100 (106)
98 1wgd_A Homocysteine-responsive 99.7 1.6E-17 5.4E-22 112.7 7.6 74 1-74 8-87 (93)
99 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.5E-17 8.5E-22 113.3 8.5 73 1-74 26-98 (101)
100 1j8c_A Ubiquitin-like protein 99.7 2.7E-17 9.3E-22 117.2 9.0 78 151-229 31-108 (125)
101 2bwf_A Ubiquitin-like protein 99.7 4.2E-17 1.5E-21 106.6 9.2 71 153-224 5-75 (77)
102 1wx8_A Riken cDNA 4931431F19; 99.7 1.1E-17 3.9E-22 114.1 6.7 74 1-75 18-91 (96)
103 3u5e_m 60S ribosomal protein L 99.7 6.9E-19 2.4E-23 126.4 0.3 77 153-229 1-77 (128)
104 1v5o_A 1700011N24RIK protein; 99.7 2.1E-17 7E-22 114.0 7.5 79 151-229 6-89 (102)
105 2klc_A Ubiquilin-1; ubiquitin- 99.7 5.6E-17 1.9E-21 111.5 9.5 81 147-228 20-100 (101)
106 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4.1E-17 1.4E-21 113.3 8.5 78 151-229 16-93 (106)
107 1we6_A Splicing factor, putati 99.7 3.6E-17 1.2E-21 114.5 7.5 75 1-75 28-106 (111)
108 4dbg_A Ranbp-type and C3HC4-ty 99.7 6.1E-17 2.1E-21 110.6 8.2 72 1-72 25-99 (105)
109 3u5e_m 60S ribosomal protein L 99.7 1.4E-18 4.9E-23 124.7 0.0 74 1-74 1-74 (128)
110 1j8c_A Ubiquitin-like protein 99.7 6.5E-17 2.2E-21 115.3 8.5 73 1-74 33-105 (125)
111 1se9_A Ubiquitin family; ubiqu 99.7 1.5E-16 5.1E-21 112.1 10.1 79 151-229 15-107 (126)
112 3u5c_f 40S ribosomal protein S 99.7 1.5E-18 5.3E-23 127.3 0.0 77 153-229 1-77 (152)
113 3m63_B Ubiquitin domain-contai 99.7 1.9E-17 6.5E-22 113.8 5.2 92 54-148 8-99 (101)
114 1wju_A NEDD8 ultimate buster-1 99.7 5.6E-17 1.9E-21 109.9 7.4 70 3-73 18-91 (100)
115 1wx7_A Ubiquilin 3; ubiquitin- 99.7 6.2E-17 2.1E-21 112.4 7.8 73 1-74 18-90 (106)
116 1v5o_A 1700011N24RIK protein; 99.7 5.2E-17 1.8E-21 111.9 7.1 74 1-74 8-86 (102)
117 1wgh_A Ubiquitin-like 3, HCG-1 99.7 8.8E-17 3E-21 112.3 8.3 74 1-74 17-100 (116)
118 2kd0_A LRR repeats and ubiquit 99.7 1.1E-16 3.9E-21 106.5 8.1 71 3-73 14-84 (85)
119 3u5c_f 40S ribosomal protein S 99.7 3.3E-18 1.1E-22 125.6 0.0 74 1-74 1-74 (152)
120 1v5t_A 8430435I17RIK protein; 99.7 7.9E-17 2.7E-21 108.5 6.4 72 1-73 8-83 (90)
121 1se9_A Ubiquitin family; ubiqu 99.7 1.7E-16 5.8E-21 111.8 8.2 75 1-75 17-105 (126)
122 2dzm_A FAS-associated factor 1 99.7 1.1E-16 3.8E-21 109.0 7.0 73 1-73 9-82 (100)
123 1wgg_A Ubiquitin carboxyl-term 99.7 1.1E-16 3.9E-21 108.9 6.9 72 1-74 8-80 (96)
124 2gow_A HCG-1 protein, ubiquiti 99.7 1.6E-16 5.4E-21 112.5 7.7 74 1-74 18-101 (125)
125 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.7E-16 1.6E-20 108.6 9.8 78 151-228 15-102 (116)
126 2gow_A HCG-1 protein, ubiquiti 99.7 2.9E-16 9.9E-21 111.2 8.7 78 152-229 17-104 (125)
127 4dbg_A Ranbp-type and C3HC4-ty 99.7 4.8E-16 1.6E-20 106.1 9.3 72 153-224 25-99 (105)
128 2kdb_A Homocysteine-responsive 99.7 1.2E-16 4.1E-21 108.9 6.3 70 1-70 24-99 (99)
129 2daf_A FLJ35834 protein; hypot 99.7 3.6E-16 1.2E-20 107.7 8.2 74 153-226 16-90 (118)
130 2kd0_A LRR repeats and ubiquit 99.6 6.7E-16 2.3E-20 102.7 8.8 70 155-224 14-83 (85)
131 1wxv_A BAG-family molecular ch 99.6 6.7E-16 2.3E-20 104.4 7.7 73 1-74 8-86 (92)
132 2kdb_A Homocysteine-responsive 99.6 4.2E-16 1.4E-20 106.2 6.7 72 151-222 22-99 (99)
133 1v86_A DNA segment, CHR 7, way 99.6 2.8E-16 9.6E-21 106.8 5.7 71 1-73 18-88 (95)
134 1x1m_A Ubiquitin-like protein 99.6 4.7E-16 1.6E-20 108.0 6.8 74 1-74 13-101 (107)
135 1v5t_A 8430435I17RIK protein; 99.6 6.2E-16 2.1E-20 104.1 7.2 72 152-224 7-82 (90)
136 1wia_A Hypothetical ubiquitin- 99.6 6.7E-16 2.3E-20 105.1 7.4 71 1-74 8-79 (95)
137 1wia_A Hypothetical ubiquitin- 99.6 1.7E-15 6E-20 103.0 9.4 75 151-228 6-81 (95)
138 2dzj_A Synaptic glycoprotein S 99.6 3.6E-16 1.2E-20 104.5 5.7 69 1-69 11-85 (88)
139 1wgg_A Ubiquitin carboxyl-term 99.6 7.4E-16 2.5E-20 104.8 6.9 71 152-224 7-78 (96)
140 1we7_A SF3A1 protein; structur 99.6 1.7E-15 6E-20 106.6 8.9 78 75-152 24-111 (115)
141 1x1m_A Ubiquitin-like protein 99.6 1.9E-15 6.4E-20 105.0 8.3 77 151-227 11-102 (107)
142 2daf_A FLJ35834 protein; hypot 99.6 1.4E-15 4.6E-20 104.8 7.4 77 2-78 17-94 (118)
143 2io1_B Small ubiquitin-related 99.6 3E-15 1E-19 101.1 8.8 80 151-230 6-85 (94)
144 4b6w_A Tubulin-specific chaper 99.6 1.6E-15 5.5E-20 100.8 7.2 71 2-72 4-83 (86)
145 2kjr_A CG11242; UBL, ubiquitin 99.6 2E-15 6.8E-20 102.2 7.7 69 2-70 17-93 (95)
146 4b6w_A Tubulin-specific chaper 99.6 2.1E-15 7.2E-20 100.2 7.3 64 161-224 13-83 (86)
147 2kjr_A CG11242; UBL, ubiquitin 99.6 3.2E-15 1.1E-19 101.2 7.9 71 152-222 15-93 (95)
148 2dzm_A FAS-associated factor 1 99.6 1.5E-15 5.3E-20 103.3 5.8 73 152-224 8-81 (100)
149 2xzm_9 RPS31E; ribosome, trans 99.6 1.3E-16 4.3E-21 120.2 0.0 70 1-75 1-70 (189)
150 1wxv_A BAG-family molecular ch 99.6 6.2E-15 2.1E-19 99.6 8.3 75 151-226 6-86 (92)
151 1v86_A DNA segment, CHR 7, way 99.6 1.4E-15 4.9E-20 103.2 4.9 73 152-226 17-89 (95)
152 2dzj_A Synaptic glycoprotein S 99.6 4E-15 1.4E-19 99.4 6.7 70 152-221 10-85 (88)
153 3ai5_A Yeast enhanced green fl 99.6 4.7E-15 1.6E-19 120.2 8.2 73 1-73 234-306 (307)
154 2io0_B Small ubiquitin-related 99.6 2.2E-14 7.6E-19 96.1 9.8 80 151-230 4-83 (91)
155 2kj6_A Tubulin folding cofacto 99.6 7.3E-15 2.5E-19 99.6 7.1 70 2-71 16-94 (97)
156 3ai5_A Yeast enhanced green fl 99.6 1.2E-14 4.1E-19 117.8 9.3 78 149-226 230-307 (307)
157 1wf9_A NPL4 family protein; be 99.5 7.9E-15 2.7E-19 101.7 6.8 72 1-73 8-95 (107)
158 2kj6_A Tubulin folding cofacto 99.5 1E-14 3.4E-19 99.0 7.0 71 153-223 15-94 (97)
159 2xzm_9 RPS31E; ribosome, trans 99.5 4.3E-16 1.5E-20 117.3 0.1 72 153-229 1-72 (189)
160 1t0y_A Tubulin folding cofacto 99.5 2.1E-14 7E-19 102.0 7.8 72 1-72 7-86 (122)
161 1oqy_A HHR23A, UV excision rep 99.5 2E-14 6.9E-19 119.7 7.7 79 151-229 6-88 (368)
162 1v6e_A Cytoskeleton-associated 99.5 2.7E-14 9.2E-19 97.0 6.9 70 2-71 9-86 (95)
163 2d07_B Ubiquitin-like protein 99.5 8.6E-14 2.9E-18 93.8 8.8 78 151-228 16-93 (93)
164 1v6e_A Cytoskeleton-associated 99.5 5.2E-14 1.8E-18 95.5 7.5 71 153-223 8-86 (95)
165 1oqy_A HHR23A, UV excision rep 99.5 2.7E-14 9.2E-19 118.9 7.2 74 1-74 8-85 (368)
166 1t0y_A Tubulin folding cofacto 99.5 1.4E-13 4.8E-18 97.7 8.6 73 152-224 6-86 (122)
167 1wz0_A Ubiquitin-like protein 99.5 1.1E-13 3.8E-18 94.9 6.9 79 151-229 23-101 (104)
168 2kzr_A Ubiquitin thioesterase 99.5 6.4E-14 2.2E-18 93.3 5.6 71 1-72 1-77 (86)
169 2eke_C Ubiquitin-like protein 99.5 3.3E-13 1.1E-17 92.6 8.6 77 151-228 30-106 (106)
170 2io1_B Small ubiquitin-related 99.4 2.4E-13 8.1E-18 91.7 7.7 76 1-76 8-83 (94)
171 1wf9_A NPL4 family protein; be 99.4 7.6E-14 2.6E-18 96.8 5.0 71 153-224 8-94 (107)
172 2k8h_A Small ubiquitin protein 99.4 3.1E-13 1.1E-17 93.4 5.9 79 151-229 25-103 (110)
173 3shq_A UBLCP1; phosphatase, hy 99.4 3.1E-13 1E-17 111.0 6.8 74 1-75 6-82 (320)
174 1wm3_A Ubiquitin-like protein 99.4 1.5E-12 5.2E-17 83.5 8.4 70 153-222 2-71 (72)
175 1wm3_A Ubiquitin-like protein 99.4 1.5E-12 5E-17 83.6 7.6 70 1-70 2-71 (72)
176 2io0_B Small ubiquitin-related 99.4 1.8E-12 6.2E-17 86.7 8.3 75 1-75 6-80 (91)
177 2kzr_A Ubiquitin thioesterase 99.4 5.3E-13 1.8E-17 88.8 5.4 71 153-224 1-77 (86)
178 3shq_A UBLCP1; phosphatase, hy 99.4 6.9E-13 2.4E-17 108.9 6.8 72 152-224 5-79 (320)
179 2d07_B Ubiquitin-like protein 99.3 5E-12 1.7E-16 85.1 8.1 74 1-74 18-91 (93)
180 3a4r_A Nfatc2-interacting prot 99.3 7.1E-12 2.4E-16 81.8 8.2 72 151-222 6-78 (79)
181 1wz0_A Ubiquitin-like protein 99.3 7.3E-12 2.5E-16 85.8 7.9 74 1-74 25-98 (104)
182 3a4r_A Nfatc2-interacting prot 99.3 8.5E-12 2.9E-16 81.4 7.8 70 1-70 8-78 (79)
183 2k8h_A Small ubiquitin protein 99.3 7.4E-12 2.5E-16 86.5 7.2 80 74-153 24-103 (110)
184 2eke_C Ubiquitin-like protein 99.3 1.1E-11 3.6E-16 85.0 6.7 78 74-152 29-106 (106)
185 1wjn_A Tubulin-folding protein 99.3 3.6E-11 1.2E-15 81.7 9.2 72 153-224 10-92 (97)
186 1wjn_A Tubulin-folding protein 99.3 2.1E-11 7E-16 83.0 7.8 71 2-72 11-92 (97)
187 3kyd_D Small ubiquitin-related 99.2 2.5E-10 8.6E-15 78.9 9.5 77 151-227 39-115 (115)
188 3tix_A Ubiquitin-like protein 99.1 2.2E-10 7.4E-15 85.3 7.0 78 151-229 56-133 (207)
189 3pge_A SUMO-modified prolifera 99.1 6.6E-10 2.2E-14 84.4 8.8 78 151-229 28-105 (200)
190 3kyd_D Small ubiquitin-related 99.0 1.6E-09 5.6E-14 74.9 7.8 75 75-149 39-113 (115)
191 3v7o_A Minor nucleoprotein VP3 98.9 1.3E-10 4.3E-15 87.7 0.4 81 149-230 18-98 (227)
192 3goe_A DNA repair protein RAD6 98.9 1.6E-08 5.6E-13 63.7 9.1 70 154-223 11-81 (82)
193 3pge_A SUMO-modified prolifera 98.9 1.6E-08 5.6E-13 76.8 10.3 79 73-152 26-104 (200)
194 2pjh_A Protein NPL4, nuclear p 98.8 4E-09 1.4E-13 68.7 4.1 69 1-70 5-78 (80)
195 3tix_A Ubiquitin-like protein 98.8 6E-09 2E-13 77.6 5.3 100 53-153 32-133 (207)
196 3goe_A DNA repair protein RAD6 98.7 8.8E-08 3E-12 60.3 8.1 71 77-147 10-81 (82)
197 3v7o_A Minor nucleoprotein VP3 98.6 3.1E-09 1.1E-13 80.2 0.1 82 71-153 16-97 (227)
198 2jxx_A Nfatc2-interacting prot 98.6 2E-07 6.9E-12 62.6 8.4 72 151-222 24-96 (97)
199 2pjh_A Protein NPL4, nuclear p 98.6 6.3E-08 2.2E-12 63.0 5.1 70 76-146 4-78 (80)
200 4efo_A Serine/threonine-protei 98.6 2.2E-07 7.5E-12 61.7 7.3 51 9-59 22-74 (94)
201 3uf8_A Ubiquitin-like protein 98.6 2.2E-07 7.4E-12 71.8 8.2 81 148-229 17-97 (209)
202 2jxx_A Nfatc2-interacting prot 98.5 6.3E-07 2.2E-11 60.1 8.3 73 74-146 23-96 (97)
203 3ivf_A Talin-1; FERM domain, c 98.5 7.6E-06 2.6E-10 68.6 16.8 143 78-224 5-167 (371)
204 3ix6_A TS, tsase, thymidylate 98.5 1.9E-08 6.6E-13 82.8 0.1 81 148-229 17-97 (360)
205 2al3_A TUG long isoform; TUG U 98.5 5.4E-07 1.8E-11 58.9 6.7 75 151-225 8-82 (90)
206 2l76_A Nfatc2-interacting prot 98.4 2.4E-06 8.2E-11 56.4 7.9 71 153-224 22-92 (95)
207 2al3_A TUG long isoform; TUG U 98.3 3.5E-06 1.2E-10 55.1 7.6 74 75-148 8-81 (90)
208 2l76_A Nfatc2-interacting prot 98.3 4.4E-06 1.5E-10 55.1 8.1 73 75-148 20-92 (95)
209 4efo_A Serine/threonine-protei 98.3 2.5E-06 8.5E-11 56.6 6.9 70 155-224 15-88 (94)
210 2ylm_A Ubiquitin carboxyl-term 98.2 3.3E-05 1.1E-09 67.6 15.0 183 13-196 38-286 (530)
211 3ix6_A TS, tsase, thymidylate 98.2 1.4E-07 4.9E-12 77.6 -0.0 83 70-153 15-97 (360)
212 3ivf_A Talin-1; FERM domain, c 98.2 5E-05 1.7E-09 63.6 15.5 134 10-146 12-165 (371)
213 4da1_A Protein phosphatase 1K, 98.2 1.9E-07 6.4E-12 79.0 0.0 77 152-229 30-106 (389)
214 3uf8_A Ubiquitin-like protein 98.2 2.4E-06 8.4E-11 65.8 6.1 82 70-152 15-96 (209)
215 2kc2_A Talin-1, F1; FERM, adhe 98.1 3.6E-06 1.2E-10 59.1 5.5 71 154-224 13-122 (128)
216 2kc2_A Talin-1, F1; FERM, adhe 98.0 7.2E-06 2.5E-10 57.6 5.6 69 3-71 14-121 (128)
217 2bps_A YUKD protein; ubiquitin 98.0 1.8E-05 6.1E-10 51.0 6.8 68 154-221 6-80 (81)
218 3qx1_A FAS-associated factor 1 97.9 8.8E-05 3E-09 48.4 8.2 70 153-223 8-82 (84)
219 4da1_A Protein phosphatase 1K, 97.8 2.1E-06 7.2E-11 72.5 0.0 82 75-157 29-110 (389)
220 2ylm_A Ubiquitin carboxyl-term 97.8 0.0036 1.2E-07 54.7 20.0 210 2-211 132-408 (530)
221 2bps_A YUKD protein; ubiquitin 97.7 8E-05 2.7E-09 48.0 6.0 68 2-69 6-80 (81)
222 3qx1_A FAS-associated factor 1 97.6 0.00052 1.8E-08 44.7 8.5 68 2-70 9-81 (84)
223 2dzk_A UBX domain-containing p 97.4 0.00076 2.6E-08 46.2 7.7 72 153-224 14-90 (109)
224 1wj4_A KIAA0794 protein; UBX d 97.4 0.00087 3E-08 47.0 7.8 92 54-146 21-117 (124)
225 1wj4_A KIAA0794 protein; UBX d 97.3 0.00064 2.2E-08 47.7 6.7 71 152-223 43-118 (124)
226 2dzk_A UBX domain-containing p 97.2 0.0026 8.9E-08 43.5 8.2 70 2-71 15-89 (109)
227 2cr5_A Reproduction 8; UBX dom 96.9 0.0044 1.5E-07 42.3 7.5 71 153-224 24-98 (109)
228 2daj_A KIAA0977 protein, COBL- 96.9 0.0023 7.8E-08 40.9 5.2 63 153-215 11-76 (91)
229 4a3p_A Ubiquitin carboxyl-term 96.8 0.0029 1E-07 48.8 7.0 67 164-230 141-214 (217)
230 3jyu_A Ubiquitin carboxyl-term 96.8 0.0045 1.5E-07 48.2 7.8 66 165-230 154-226 (231)
231 2daj_A KIAA0977 protein, COBL- 96.8 0.0059 2E-07 39.0 6.6 65 75-139 9-76 (91)
232 2l32_A Small archaeal modifier 96.6 0.011 3.8E-07 37.2 7.4 61 1-71 1-61 (74)
233 1ryj_A Unknown; beta/alpha pro 96.6 0.041 1.4E-06 34.1 9.6 68 151-228 3-70 (70)
234 1s3s_G P47 protein; AAA ATPase 96.4 0.0069 2.3E-07 42.5 6.0 67 153-219 53-123 (127)
235 2cr5_A Reproduction 8; UBX dom 96.4 0.017 5.7E-07 39.4 7.4 69 2-71 25-97 (109)
236 1s3s_G P47 protein; AAA ATPase 96.2 0.017 5.7E-07 40.5 6.8 69 75-143 51-123 (127)
237 4e71_A Plexin-B2, MM1; transme 95.9 0.065 2.2E-06 36.3 8.3 63 162-224 23-110 (111)
238 2r2o_A Plexin-B1; effector dom 95.6 0.066 2.2E-06 37.6 7.8 65 162-226 40-130 (138)
239 4e71_A Plexin-B2, MM1; transme 95.5 0.063 2.1E-06 36.4 7.0 62 86-147 23-109 (111)
240 2juo_A GA-binding protein alph 95.4 0.061 2.1E-06 34.2 6.1 61 13-73 5-65 (89)
241 2juo_A GA-binding protein alph 95.3 0.14 4.8E-06 32.5 7.6 61 165-225 5-65 (89)
242 4a3p_A Ubiquitin carboxyl-term 95.0 0.075 2.6E-06 40.8 7.2 63 88-150 141-210 (217)
243 2l32_A Small archaeal modifier 95.0 0.066 2.3E-06 33.6 5.6 66 153-228 1-66 (74)
244 3jyu_A Ubiquitin carboxyl-term 94.9 0.08 2.7E-06 41.1 7.2 62 12-73 153-221 (231)
245 3h6n_A Plexin-D1; structural g 94.9 0.27 9.3E-06 34.0 8.8 64 161-224 15-104 (127)
246 2r2o_A Plexin-B1; effector dom 94.8 0.12 4E-06 36.4 6.8 64 87-150 41-130 (138)
247 1vjk_A Molybdopterin convertin 94.6 0.24 8.1E-06 32.8 8.0 73 151-228 8-98 (98)
248 3rpf_C Molybdopterin convertin 93.9 0.41 1.4E-05 29.7 7.6 58 166-228 15-74 (74)
249 2kvr_A Ubiquitin carboxyl-term 93.9 0.062 2.1E-06 37.7 4.0 34 13-46 58-91 (130)
250 3h6n_A Plexin-D1; structural g 93.9 0.25 8.7E-06 34.2 6.9 64 85-148 15-104 (127)
251 4e74_A Plexin-A4; RBD, structu 93.8 0.25 8.5E-06 33.8 6.8 64 162-225 26-115 (117)
252 1ryj_A Unknown; beta/alpha pro 93.7 0.35 1.2E-05 29.8 6.9 63 76-148 4-66 (70)
253 1tyg_B YJBS; alpha beta barrel 93.7 0.27 9.2E-06 31.8 6.5 61 161-228 26-87 (87)
254 4e74_A Plexin-A4; RBD, structu 93.7 0.27 9.2E-06 33.6 6.7 63 86-148 26-114 (117)
255 1oey_A P67-PHOX, neutrophil cy 93.6 0.14 4.9E-06 32.8 5.0 45 153-199 6-50 (83)
256 1oey_A P67-PHOX, neutrophil cy 93.2 0.22 7.4E-06 31.9 5.3 44 4-47 7-50 (83)
257 2cu3_A Unknown function protei 92.4 0.31 1.1E-05 29.4 5.2 61 160-228 4-64 (64)
258 2kl0_A Putative thiamin biosyn 92.3 0.25 8.7E-06 30.8 4.8 62 1-73 1-62 (73)
259 1vjk_A Molybdopterin convertin 92.3 0.86 3E-05 30.0 7.7 69 75-148 8-94 (98)
260 3rpf_C Molybdopterin convertin 92.3 0.55 1.9E-05 29.2 6.3 68 1-73 1-71 (74)
261 3po0_A Small archaeal modifier 92.1 0.57 2E-05 30.1 6.5 61 163-228 18-89 (89)
262 1tyg_B YJBS; alpha beta barrel 91.8 0.56 1.9E-05 30.3 6.1 57 9-72 26-83 (87)
263 3kuz_A Plexin-C1; structural g 91.8 2.1 7E-05 29.5 9.0 61 163-223 39-125 (126)
264 2k5p_A THis protein, thiamine- 91.8 0.49 1.7E-05 29.9 5.6 65 1-73 1-66 (78)
265 2kl0_A Putative thiamin biosyn 91.5 0.3 1E-05 30.5 4.4 61 161-229 6-66 (73)
266 1ef1_A Moesin; membrane, FERM 91.4 1 3.4E-05 35.9 8.6 72 153-225 2-79 (294)
267 1ip9_A BEM1 protein; ubiquitin 91.4 0.26 8.7E-06 31.5 3.9 35 2-37 14-48 (85)
268 1f0z_A THis protein; ubiquitin 91.3 0.33 1.1E-05 29.5 4.4 61 161-228 6-66 (66)
269 1fm0_D Molybdopterin convertin 90.8 0.56 1.9E-05 29.5 5.4 59 164-228 18-81 (81)
270 1h4r_A Merlin; FERM, neurofibr 90.5 1.3 4.4E-05 35.7 8.5 75 150-225 20-99 (314)
271 1vd2_A Protein kinase C, IOTA 90.5 1.3 4.3E-05 28.8 6.7 44 4-47 8-53 (89)
272 1vd2_A Protein kinase C, IOTA 90.0 1.3 4.5E-05 28.7 6.5 48 77-125 7-55 (89)
273 2kvr_A Ubiquitin carboxyl-term 89.8 0.19 6.6E-06 35.2 2.6 32 165-196 58-89 (130)
274 3dwg_C 9.5 kDa culture filtrat 89.8 2.3 8E-05 27.4 7.9 61 166-228 20-93 (93)
275 2q5w_D Molybdopterin convertin 89.7 0.44 1.5E-05 29.7 4.1 59 164-228 17-77 (77)
276 1f0z_A THis protein; ubiquitin 89.7 0.75 2.6E-05 27.8 5.0 62 1-72 1-62 (66)
277 2i1j_A Moesin; FERM, coiled-co 89.7 1.5 5.2E-05 38.6 8.8 74 151-225 3-82 (575)
278 2k5p_A THis protein, thiamine- 89.2 0.41 1.4E-05 30.3 3.6 64 161-229 6-70 (78)
279 3kuz_A Plexin-C1; structural g 89.0 1.8 6.2E-05 29.8 6.9 60 11-70 39-124 (126)
280 3dwg_C 9.5 kDa culture filtrat 87.6 2.2 7.4E-05 27.6 6.5 71 1-73 1-90 (93)
281 3hm6_X Plexin-B1; structural g 87.5 2.9 9.9E-05 36.8 8.8 63 163-225 274-362 (644)
282 1rws_A Hypothetical protein PF 87.3 0.19 6.6E-06 31.6 1.1 54 166-228 24-77 (77)
283 4eut_A Serine/threonine-protei 87.0 2.3 8E-05 35.1 8.0 40 9-48 320-359 (396)
284 1wgk_A Riken cDNA 2900073H19 p 86.9 4.9 0.00017 27.2 8.1 63 164-229 31-109 (114)
285 2g1e_A Hypothetical protein TA 85.3 2.3 7.7E-05 27.2 5.6 62 166-228 18-90 (90)
286 3po0_A Small archaeal modifier 85.2 2.9 0.0001 26.7 6.1 59 87-150 18-87 (89)
287 1ef1_A Moesin; membrane, FERM 84.4 4.7 0.00016 31.9 8.2 68 1-69 2-75 (294)
288 3qa8_A MGC80376 protein; kinas 84.2 1.1 3.8E-05 40.2 4.9 51 9-59 320-371 (676)
289 3ig3_A Plxna3 protein; plexin 84.0 5.2 0.00018 35.2 8.6 64 162-225 246-335 (627)
290 3qij_A Protein 4.1; cytoskelet 83.5 3.1 0.0001 33.2 6.8 74 151-224 16-95 (296)
291 2qjl_A URM1, ubiquitin-related 82.6 7.7 0.00026 25.3 7.4 63 163-228 20-99 (99)
292 1wgy_A RAP guanine nucleotide 82.5 5.5 0.00019 26.5 6.5 72 77-148 10-86 (104)
293 1fm0_D Molybdopterin convertin 82.3 2.3 7.9E-05 26.5 4.6 56 88-149 18-78 (81)
294 2q5w_D Molybdopterin convertin 82.1 2.2 7.6E-05 26.3 4.4 56 87-148 16-73 (77)
295 1ip9_A BEM1 protein; ubiquitin 81.8 5.3 0.00018 25.4 5.9 46 75-123 11-57 (85)
296 2inc_C TOUB protein; DIIRON, 4 81.2 8.1 0.00028 24.4 7.6 60 165-224 15-82 (83)
297 2kmc_A Fermitin family homolog 80.0 10 0.00035 24.8 8.5 71 2-72 21-99 (102)
298 1wgy_A RAP guanine nucleotide 79.4 9.5 0.00032 25.3 6.8 68 157-224 14-86 (104)
299 1h4r_A Merlin; FERM, neurofibr 79.0 9.5 0.00033 30.4 8.3 65 2-67 24-93 (314)
300 1q1o_A Cell division control p 78.9 2.4 8.3E-05 27.9 3.8 28 10-37 22-49 (98)
301 1rws_A Hypothetical protein PF 78.4 1.9 6.7E-05 26.8 3.2 50 14-72 24-73 (77)
302 2cu3_A Unknown function protei 78.2 3.7 0.00013 24.4 4.3 57 8-72 4-60 (64)
303 1wgr_A Growth factor receptor- 77.7 5.1 0.00017 26.5 5.1 61 75-135 8-75 (100)
304 1y8x_B Ubiquitin-activating en 77.5 3.5 0.00012 27.2 4.3 60 163-222 5-82 (98)
305 3onh_A Ubiquitin-activating en 76.9 4.4 0.00015 27.9 4.8 50 172-222 19-77 (127)
306 2kmm_A Guanosine-3',5'-BIS(dip 76.9 7.9 0.00027 23.3 5.7 61 1-70 1-61 (73)
307 3ig3_A Plxna3 protein; plexin 76.6 7.1 0.00024 34.3 7.0 65 86-150 246-336 (627)
308 1wgr_A Growth factor receptor- 76.6 5.8 0.0002 26.2 5.1 60 152-211 9-75 (100)
309 3ge3_C Toluene-4-monooxygenase 76.1 12 0.00042 23.6 6.3 59 165-223 17-82 (84)
310 1y8x_B Ubiquitin-activating en 76.1 4.7 0.00016 26.5 4.6 59 12-70 6-82 (98)
311 2kmm_A Guanosine-3',5'-BIS(dip 76.0 7.5 0.00026 23.4 5.4 63 153-224 1-63 (73)
312 2k9x_A Tburm1, uncharacterized 75.9 2.4 8.3E-05 28.6 3.3 65 162-228 20-102 (110)
313 3hm6_X Plexin-B1; structural g 75.1 7.3 0.00025 34.3 6.7 63 87-149 274-362 (644)
314 2i1j_A Moesin; FERM, coiled-co 74.8 14 0.0005 32.4 8.7 67 2-69 6-78 (575)
315 1j0g_A Hypothetical protein 18 74.6 12 0.00041 23.4 5.8 64 166-229 27-91 (92)
316 3qij_A Protein 4.1; cytoskelet 74.2 5.3 0.00018 31.8 5.4 59 1-59 18-82 (296)
317 1q1o_A Cell division control p 72.1 6.3 0.00022 25.9 4.4 48 76-123 5-64 (98)
318 2qjl_A URM1, ubiquitin-related 71.7 18 0.00061 23.5 7.6 35 1-35 2-46 (99)
319 4eut_A Serine/threonine-protei 70.3 18 0.00062 29.6 8.1 53 84-136 319-373 (396)
320 3qa8_A MGC80376 protein; kinas 69.6 5.1 0.00017 36.0 4.7 52 84-135 319-371 (676)
321 2zjd_A Microtubule-associated 69.6 18 0.00062 25.0 6.5 75 74-148 33-119 (130)
322 2dhz_A RAP guanine nucleotide 69.5 12 0.0004 25.6 5.5 72 76-147 9-91 (120)
323 3r8s_T 50S ribosomal protein L 69.4 7.2 0.00025 25.3 4.2 39 10-48 27-66 (93)
324 1vq8_S 50S ribosomal protein L 67.4 7.4 0.00025 24.8 3.9 32 10-41 22-53 (85)
325 2r2q_A Gamma-aminobutyric acid 66.5 18 0.00062 24.1 6.0 72 75-146 26-107 (110)
326 2l52_A Methanosarcina acetivor 66.3 24 0.00081 22.9 7.1 68 1-72 4-95 (99)
327 2hj1_A Hypothetical protein; s 65.9 25 0.00085 22.9 6.9 56 163-223 26-84 (97)
328 3onh_A Ubiquitin-activating en 65.0 20 0.00067 24.7 5.8 51 96-147 19-78 (127)
329 1v8c_A MOAD related protein; r 64.6 8.4 0.00029 28.0 4.3 62 166-229 17-88 (168)
330 3r8s_T 50S ribosomal protein L 62.9 14 0.00048 23.9 4.6 40 162-201 27-67 (93)
331 2g1e_A Hypothetical protein TA 62.7 25 0.00087 21.9 6.5 58 14-72 18-86 (90)
332 2l52_A Methanosarcina acetivor 62.5 13 0.00045 24.2 4.6 60 167-228 23-99 (99)
333 3tve_T 50S ribosomal protein L 61.7 10 0.00034 24.6 3.7 39 10-48 21-60 (92)
334 3ge3_C Toluene-4-monooxygenase 61.2 28 0.00096 22.0 6.2 58 89-146 17-81 (84)
335 1wgk_A Riken cDNA 2900073H19 p 61.1 34 0.0012 22.9 8.0 72 1-74 12-106 (114)
336 3j21_T 50S ribosomal protein L 61.1 12 0.00041 23.9 4.0 33 10-42 23-55 (86)
337 2c7h_A RBBP6, retinoblastoma-b 60.3 30 0.001 22.0 6.0 70 155-228 9-84 (86)
338 2zjr_Q 50S ribosomal protein L 60.3 11 0.00037 24.6 3.8 36 12-47 24-60 (95)
339 3u52_E Phenol hydroxylase comp 59.1 39 0.0013 22.9 6.4 61 164-224 39-109 (119)
340 2v1y_A Phosphatidylinositol-4, 58.3 15 0.00053 24.5 4.3 64 75-138 18-95 (108)
341 4dxe_H ACP, acyl carrier prote 58.2 1.9 6.6E-05 28.5 -0.2 81 13-109 18-99 (101)
342 1af8_A Actinorhodin polyketide 57.4 12 0.00042 23.2 3.7 79 20-110 4-82 (86)
343 1eo6_A GATE-16, golgi-associat 57.3 41 0.0014 22.7 6.5 74 75-148 27-110 (117)
344 1pqs_A Cell division control p 56.9 11 0.00038 23.5 3.2 27 11-37 2-28 (77)
345 3au4_A Myosin-X; protein-prote 56.8 36 0.0012 29.5 7.7 60 75-134 215-280 (555)
346 2lgx_A Fermitin family homolog 55.9 9.7 0.00033 25.4 2.9 70 2-72 28-102 (112)
347 2v1y_A Phosphatidylinositol-4, 55.2 27 0.00093 23.3 5.1 32 4-35 23-54 (108)
348 3u52_E Phenol hydroxylase comp 54.8 35 0.0012 23.1 5.6 60 87-146 38-107 (119)
349 3hk0_A Growth factor receptor- 54.3 31 0.0011 26.8 6.1 57 154-210 10-73 (256)
350 2dhz_A RAP guanine nucleotide 53.4 30 0.001 23.5 5.1 68 157-224 14-92 (120)
351 3h9d_A ATG8, microtubule-assoc 53.1 21 0.00073 24.2 4.4 44 15-58 52-96 (119)
352 3tve_T 50S ribosomal protein L 52.8 19 0.00064 23.3 3.9 38 163-200 22-60 (92)
353 3rui_B Autophagy-related prote 52.6 51 0.0017 22.3 6.9 59 90-148 50-112 (118)
354 3m95_A Autophagy related prote 51.8 23 0.0008 24.3 4.5 44 15-58 57-101 (125)
355 3h9d_A ATG8, microtubule-assoc 51.7 53 0.0018 22.2 6.6 74 74-147 29-112 (119)
356 2hj1_A Hypothetical protein; s 51.4 47 0.0016 21.6 5.8 56 11-71 26-84 (97)
357 3au4_A Myosin-X; protein-prote 51.4 27 0.00092 30.3 6.0 44 2-45 218-263 (555)
358 3m95_A Autophagy related prote 51.4 56 0.0019 22.4 6.7 59 90-148 56-118 (125)
359 4a6q_A Histone deacetylase com 50.9 61 0.0021 22.7 7.0 64 12-75 55-141 (143)
360 2lgx_A Fermitin family homolog 49.7 45 0.0015 22.2 5.3 60 87-146 36-100 (112)
361 2zjr_Q 50S ribosomal protein L 49.3 17 0.00059 23.6 3.3 37 164-200 24-61 (95)
362 3hk0_A Growth factor receptor- 48.8 64 0.0022 25.0 7.1 59 77-135 9-74 (256)
363 2inc_C TOUB protein; DIIRON, 4 48.1 49 0.0017 20.8 6.3 59 89-147 15-81 (83)
364 3rui_B Autophagy-related prote 47.9 29 0.001 23.5 4.5 44 15-58 51-95 (118)
365 1pqs_A Cell division control p 47.4 22 0.00074 22.2 3.4 36 88-123 3-43 (77)
366 1vq8_S 50S ribosomal protein L 46.9 16 0.00055 23.2 2.8 35 162-196 22-56 (85)
367 4gdk_A Ubiquitin-like protein 45.6 43 0.0015 21.5 4.8 44 14-57 23-68 (91)
368 4gmv_A RAS-associated and plec 45.6 42 0.0014 26.5 5.7 59 77-135 32-97 (281)
369 2zjd_A Microtubule-associated 45.2 38 0.0013 23.4 4.7 45 14-58 56-102 (130)
370 2kmc_A Fermitin family homolog 43.8 66 0.0022 21.0 9.3 71 77-147 20-98 (102)
371 3lxf_A Ferredoxin; iron, iron- 42.7 31 0.0011 22.5 4.0 27 2-28 2-28 (104)
372 3pvl_A Myosin VIIA isoform 1; 41.8 39 0.0013 30.2 5.5 45 1-45 264-309 (655)
373 2zkr_s 60S ribosomal protein L 41.7 29 0.001 24.8 3.8 31 11-41 94-124 (156)
374 3pvl_A Myosin VIIA isoform 1; 41.7 37 0.0013 30.3 5.3 47 75-121 262-309 (655)
375 3j21_T 50S ribosomal protein L 40.2 25 0.00087 22.3 3.0 35 162-196 23-57 (86)
376 4gmv_A RAS-associated and plec 40.0 57 0.0019 25.7 5.7 57 154-210 33-96 (281)
377 1vku_A Acyl carrier protein; T 39.5 5.6 0.00019 26.1 -0.2 75 20-110 16-90 (100)
378 4gdk_A Ubiquitin-like protein 39.5 64 0.0022 20.6 4.9 58 89-146 22-83 (91)
379 3u5e_X 60S ribosomal protein L 39.2 34 0.0012 24.0 3.7 31 11-41 80-110 (142)
380 1n62_A Carbon monoxide dehydro 39.1 32 0.0011 24.8 3.8 28 2-30 5-32 (166)
381 3tca_A Amyloid beta A4 precurs 39.1 66 0.0022 24.8 6.0 41 77-117 35-75 (291)
382 2lte_A Specialized acyl carrie 45.2 6.4 0.00022 26.0 0.0 73 22-110 27-99 (103)
383 4a17_R RPL23A, 60S ribosomal p 38.8 37 0.0013 24.1 3.9 32 10-41 87-118 (150)
384 3tca_A Amyloid beta A4 precurs 38.5 75 0.0026 24.5 6.3 39 3-41 37-75 (291)
385 2r2q_A Gamma-aminobutyric acid 38.1 80 0.0027 20.9 5.4 44 15-58 48-92 (110)
386 1wxm_A A-RAF proto-oncogene se 38.0 76 0.0026 20.1 5.4 43 78-120 9-51 (86)
387 1c1y_B Proto-onkogene serine/t 37.2 74 0.0025 19.7 5.4 42 79-120 4-45 (77)
388 2cnr_A FAS, ACP, acyl carrier 37.1 6.1 0.00021 24.3 -0.3 74 20-109 6-80 (82)
389 2c7h_A RBBP6, retinoblastoma-b 36.9 80 0.0027 20.0 6.9 35 89-123 20-56 (86)
390 2eel_A Cell death activator CI 36.5 71 0.0024 20.5 4.7 49 21-72 28-78 (91)
391 1uiz_A MIF, macrophage migrati 36.3 86 0.0029 20.5 5.5 86 19-123 16-101 (115)
392 1ffv_A CUTS, iron-sulfur prote 36.3 38 0.0013 24.3 3.8 28 2-30 5-32 (163)
393 1eo6_A GATE-16, golgi-associat 36.0 64 0.0022 21.7 4.7 44 15-58 49-93 (117)
394 3e19_A FEOA; transcriptional r 36.0 47 0.0016 20.1 3.8 29 130-159 29-57 (77)
395 2cu1_A Mitogen-activated prote 35.7 92 0.0031 20.4 6.1 41 3-46 9-50 (103)
396 1wxm_A A-RAF proto-oncogene se 35.5 85 0.0029 19.9 5.2 43 154-196 9-51 (86)
397 1rm6_C 4-hydroxybenzoyl-COA re 34.3 61 0.0021 23.1 4.6 25 7-31 8-32 (161)
398 1j0g_A Hypothetical protein 18 33.9 87 0.003 19.6 6.7 62 89-150 26-88 (92)
399 1t3q_A Quinoline 2-oxidoreduct 33.6 46 0.0016 23.9 3.9 28 1-29 10-37 (168)
400 2xcz_A Possible ATLS1-like lig 33.4 95 0.0033 20.2 5.3 82 23-123 20-101 (115)
401 1f2r_I Inhibitor of caspase-ac 32.4 1E+02 0.0036 20.1 5.0 49 21-72 37-89 (100)
402 2bt6_A Adrenodoxin 1; rutheniu 32.4 53 0.0018 21.3 3.8 27 2-28 8-34 (108)
403 2os5_A Acemif; macrophage migr 32.2 1E+02 0.0035 20.3 5.3 87 19-124 16-102 (119)
404 3iz5_X 60S ribosomal protein L 32.1 38 0.0013 24.0 3.1 32 11-42 90-121 (152)
405 2nvu_B Maltose binding protein 31.8 93 0.0032 28.3 6.5 59 164-222 713-789 (805)
406 3hrd_D Nicotinate dehydrogenas 31.4 42 0.0014 24.0 3.3 26 2-28 5-30 (160)
407 2l05_A Serine/threonine-protei 31.2 1.1E+02 0.0037 19.8 5.5 44 77-120 18-61 (95)
408 3ejb_A Acyl carrier protein; p 30.2 8.6 0.0003 24.9 -0.5 79 15-109 16-95 (97)
409 3bbo_V Ribosomal protein L23; 29.6 25 0.00086 25.9 1.8 32 10-41 131-162 (198)
410 2y5c_A Adrenodoxin-like protei 28.7 67 0.0023 20.9 3.8 27 2-28 7-33 (109)
411 2ava_A ACP I, acyl carrier pro 28.7 36 0.0012 20.6 2.3 74 22-110 5-78 (82)
412 3gzm_A Acyl carrier protein; h 27.1 8.6 0.0003 23.7 -0.9 73 22-110 6-79 (81)
413 2qwv_A UPF0217 protein VC_A105 26.9 1.3E+02 0.0044 22.5 5.4 66 135-200 50-116 (208)
414 2kjs_A Putative acyl carrier p 26.7 15 0.0005 23.3 0.2 74 21-110 2-76 (87)
415 2wlb_A ETP1-FD, electron trans 26.5 96 0.0033 19.8 4.3 27 2-28 5-31 (103)
416 2kwl_A ACP, acyl carrier prote 26.0 11 0.00038 23.3 -0.5 74 21-110 9-83 (84)
417 2k5l_A FEOA; structure, NESG, 25.9 1E+02 0.0036 18.8 4.2 29 130-158 26-54 (81)
418 4dxa_B KREV interaction trappe 25.9 69 0.0024 25.5 4.1 43 75-121 4-51 (322)
419 3cjl_A Domain of unknown funct 25.8 80 0.0027 20.1 3.5 37 2-38 7-45 (88)
420 2y3a_A Phosphatidylinositol-4, 25.8 1.8E+02 0.006 27.8 7.2 61 153-213 52-126 (1092)
421 4dxa_B KREV interaction trappe 25.7 81 0.0028 25.1 4.5 35 1-39 6-42 (322)
422 1uwm_A Ferredoxin VI, FDVI; el 25.4 97 0.0033 19.9 4.2 27 2-28 2-28 (106)
423 2cu1_A Mitogen-activated prote 25.2 1.5E+02 0.005 19.4 5.9 45 77-125 9-53 (103)
424 1xlq_A Putidaredoxin, PDX; [2F 24.7 93 0.0032 20.0 3.9 27 2-28 2-28 (106)
425 2j58_A WZA, outer membrane lip 24.0 2.9E+02 0.0099 22.4 16.3 177 19-221 117-322 (359)
426 1rax_A Protein (RA-domain of R 24.0 1E+02 0.0034 20.7 3.8 38 1-38 31-69 (115)
427 1or5_A Acyl carrier protein; A 23.9 9.7 0.00033 23.5 -1.1 75 20-109 3-79 (83)
428 2al6_A Focal adhesion kinase 1 23.8 62 0.0021 26.5 3.5 55 81-135 12-77 (375)
429 3hui_A Ferredoxin; cytochrome 23.5 1.1E+02 0.0038 20.7 4.2 32 2-37 23-54 (126)
430 2k4y_A FEOA-like protein; GFT 23.3 1.2E+02 0.0039 18.8 4.0 29 130-158 29-57 (86)
431 3kh0_A Ralgds, ralgef, RAL gua 23.0 1.9E+02 0.0066 20.0 7.7 73 1-73 28-108 (140)
432 2qnw_A Acyl carrier protein; m 22.9 12 0.00041 23.0 -0.8 72 22-109 8-80 (82)
433 1dv5_A APO-DCP, APO-D-alanyl c 22.5 48 0.0016 20.2 2.0 73 23-109 6-79 (80)
434 1l0i_A Acyl carrier protein; a 22.3 18 0.00063 21.8 -0.0 72 22-109 4-76 (78)
435 1nq4_A Oxytetracycline polyket 22.2 30 0.001 22.1 1.0 79 20-110 3-81 (95)
436 3ny5_A Serine/threonine-protei 22.1 1.7E+02 0.0057 18.9 5.4 43 78-120 15-57 (96)
437 2zkr_s 60S ribosomal protein L 21.8 63 0.0022 23.0 2.7 38 162-199 93-131 (156)
438 3hvz_A Uncharacterized protein 21.6 1.3E+02 0.0043 18.5 3.8 60 2-70 7-66 (78)
439 3chb_D Cholera toxin; toxin/re 21.2 1E+02 0.0035 19.3 3.2 31 3-33 39-69 (104)
440 1hfo_A Migration inhibitory fa 21.2 1.7E+02 0.0059 18.8 5.5 83 22-123 18-100 (113)
441 2wkb_A Macrophage migration in 20.7 1.9E+02 0.0066 19.1 6.6 82 23-123 20-101 (125)
442 1wfy_A Regulator of G-protein 20.6 65 0.0022 21.2 2.3 40 160-199 25-64 (104)
443 2amw_A Hypothetical protein NE 20.6 30 0.001 21.2 0.7 77 22-110 3-81 (83)
444 3f5r_A FACT complex subunit PO 20.5 88 0.003 23.1 3.3 49 148-196 80-128 (191)
445 2jrh_A Mitogen-activated prote 20.4 1.8E+02 0.0061 18.6 5.8 36 9-47 12-47 (94)
446 2ktr_A Sequestosome-1; autopha 20.0 2E+02 0.0068 19.3 4.8 26 21-46 57-83 (117)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.5e-38 Score=238.48 Aligned_cols=153 Identities=34% Similarity=0.505 Sum_probs=147.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-e-cCcccCCCccHhhhccccCCceEEEEE-eecce
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 153 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~tL~~~~i~~~~~i~l~~~-~~~~~ 153 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.|+|+..+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||+
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=3.1e-38 Score=236.79 Aligned_cols=152 Identities=34% Similarity=0.508 Sum_probs=146.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-e-ccccccCCccccccccccccceeeeee-ecCce
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~-~g~~l~d~~tl~~~~i~~~~~i~l~~~-~~~~~ 77 (230)
|+|+|++++|+++++++++++||++||++|++.+|+||++|+|+ | +|+.|+|+.+|++|||.+++++++.++ +++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999999 58899
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+|+..+|+.+.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++++.+|
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=240.05 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.++|+..+|+++++++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=236.25 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..++|.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|+.++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+++++|
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888764
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.3e-36 Score=226.37 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|+++++..+..+++.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|+..+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=2.4e-36 Score=224.85 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=147.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..+..++|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++++|
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=123.86 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.7
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999987
No 8
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.83 E-value=9.9e-21 Score=127.26 Aligned_cols=77 Identities=56% Similarity=0.940 Sum_probs=72.2
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999995
No 9
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=125.16 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCC
Q 026940 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~ 215 (230)
|+.+++.+++.++.+..|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788889998988899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEE
Q 026940 216 ESTLHLVLR 224 (230)
Q Consensus 216 ~~~i~l~~~ 224 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999875
No 10
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.7e-21 Score=137.11 Aligned_cols=101 Identities=74% Similarity=0.991 Sum_probs=94.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
.+|+|+.++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..++.+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EE---eccCeeEeeecCCCChHHH
Q 026940 81 VK---TLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 81 v~---~~~g~~~~i~v~~~~tV~~ 101 (230)
++ ...|+++.+++.+++||++
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4568889999988888763
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=4.4e-20 Score=122.68 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=70.7
Q ss_pred EEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
...+..|.|+|++..|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|.+
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999875
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=122.24 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||++||++|+..+|+||++|+|+|+|+.|+|+.+|++|||.++++++++++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 13
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4e-20 Score=124.26 Aligned_cols=80 Identities=84% Similarity=1.240 Sum_probs=70.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
.+|.|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999963
No 14
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.6e-20 Score=123.16 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc-ccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~-l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|++++|+.+++++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||.++++|++.++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999 999999999999999999998764
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=4.8e-20 Score=122.47 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|+|+|+...|+.+.++++|++||++||++|+++.|+||++|+|.|+|+.|+|..||++|+|.+|++++|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.81 E-value=4.5e-20 Score=124.16 Aligned_cols=78 Identities=58% Similarity=0.980 Sum_probs=75.5
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.81 E-value=6e-20 Score=123.40 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.81 E-value=8.4e-20 Score=119.32 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=71.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5789998899999999999999999999999999999999999999999999999999999999999999999998
No 19
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.81 E-value=9.2e-20 Score=125.06 Aligned_cols=92 Identities=82% Similarity=1.095 Sum_probs=74.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++|++..+..++..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEeccCeeEeee
Q 026940 81 VKTLTGKTITLE 92 (230)
Q Consensus 81 v~~~~g~~~~i~ 92 (230)
.++.+|+.-.++
T Consensus 81 ~~~v~~~~~~~~ 92 (98)
T 1yx5_B 81 SSSVDKLAAALE 92 (98)
T ss_dssp ------------
T ss_pred cccCCCchhhhh
Confidence 888877655443
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=8e-20 Score=122.09 Aligned_cols=78 Identities=78% Similarity=1.131 Sum_probs=72.4
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.|.|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999984
No 21
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.7e-20 Score=125.36 Aligned_cols=78 Identities=95% Similarity=1.288 Sum_probs=75.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.81 E-value=1.2e-19 Score=124.15 Aligned_cols=78 Identities=94% Similarity=1.270 Sum_probs=73.6
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
+|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999985
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.81 E-value=1.6e-19 Score=117.93 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.6
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.7e-19 Score=121.04 Aligned_cols=80 Identities=34% Similarity=0.531 Sum_probs=76.6
Q ss_pred ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
+..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999996
No 25
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.80 E-value=1e-19 Score=119.85 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=73.8
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.|.|+|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.9e-19 Score=120.28 Aligned_cols=78 Identities=90% Similarity=1.216 Sum_probs=74.8
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.|.|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999984
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=121.81 Aligned_cols=79 Identities=35% Similarity=0.566 Sum_probs=71.6
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+++||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999999984
No 28
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.4e-21 Score=133.25 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=96.8
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+.++|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++.+++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE---eccCceeEEEeeccccHHH
Q 026940 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (230)
Q Consensus 154 ~i~v~---~~~~~~~~i~v~~~~tV~~ 177 (230)
.++++ ...|+++++++.++.||.+
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 88887 4468889999999988864
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.4e-19 Score=119.53 Aligned_cols=80 Identities=36% Similarity=0.610 Sum_probs=75.6
Q ss_pred cceeEEEEeccC-ceeEE-EeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~-~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+| +.+.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 458899999888 69999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026940 229 DF 230 (230)
Q Consensus 229 ~~ 230 (230)
.+
T Consensus 86 ~~ 87 (89)
T 1wy8_A 86 PS 87 (89)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=121.09 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.4
Q ss_pred ccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhcccc
Q 026940 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~ 139 (230)
|..+++.+++.++.+..|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456778888888888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCceEEEEE
Q 026940 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++||++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999864
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.79 E-value=2.4e-19 Score=122.61 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=76.0
Q ss_pred ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...|.|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999998
No 32
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.79 E-value=4.1e-19 Score=116.00 Aligned_cols=74 Identities=55% Similarity=0.918 Sum_probs=71.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 33
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-19 Score=120.60 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.6
Q ss_pred CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||+..|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++.+++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999998866 999999999999 9999999999999999999999999999999 799999999876
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=3.9e-19 Score=120.70 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=74.4
Q ss_pred ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCC
Q 026940 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...|.|+|+..++ ++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+++.+++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 3568899998777 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 026940 229 D 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.79 E-value=4.7e-19 Score=124.06 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=74.0
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999998
No 36
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=3.4e-19 Score=120.54 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998875
No 37
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=125.42 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.3
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458899998899999999999999999999999999999999999999999999999999999999999999999998
No 38
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2e-19 Score=121.94 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|+|+|+++.|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=4.7e-19 Score=119.02 Aligned_cols=75 Identities=87% Similarity=1.259 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++|++.+++.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887643
No 40
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=121.33 Aligned_cols=78 Identities=37% Similarity=0.629 Sum_probs=71.8
Q ss_pred eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+...|.|+|+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 34558899997 8899999999999999999999999999999999999999999999999999999999999999998
No 41
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=4.5e-19 Score=119.22 Aligned_cols=75 Identities=57% Similarity=0.958 Sum_probs=72.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988653
No 42
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=4.4e-19 Score=116.51 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+ +++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999985 999 999999999999999999999999999999999999999999999999999998875
No 43
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=8e-19 Score=114.60 Aligned_cols=75 Identities=95% Similarity=1.308 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 44
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=119.36 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=70.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988764
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.78 E-value=6.3e-19 Score=119.23 Aligned_cols=76 Identities=91% Similarity=1.259 Sum_probs=73.0
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999876
No 46
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.9e-19 Score=120.95 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988653
No 47
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.78 E-value=6e-19 Score=119.11 Aligned_cols=73 Identities=34% Similarity=0.601 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++||| ++++||++++.+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 899999998764
No 48
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=9.8e-19 Score=119.48 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
|+|+|+..+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988766543
No 49
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=6.8e-19 Score=117.52 Aligned_cols=75 Identities=80% Similarity=1.153 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988743
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=118.19 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=68.3
Q ss_pred eEEEEecc----CceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 154 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 154 ~i~v~~~~----~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
++.|+..+ +++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 45555555 6789999999999999999999999999999999999999999999999999999999 888888764
No 51
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=1.7e-18 Score=116.89 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.9
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+++.+.+++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999 89999999998766
No 52
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=7e-19 Score=115.84 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|++.++++|+++++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999987643
No 53
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.4e-18 Score=115.98 Aligned_cols=75 Identities=92% Similarity=1.241 Sum_probs=72.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988643
No 54
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=114.45 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|+++++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 55
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.4e-18 Score=113.00 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=70.7
Q ss_pred cceeEEEEeccCcee-EEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 151 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
++|.|+|+..+|+.+ .++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468999999999985 999 999999999999999999999999999999999999999999999999999999885
No 56
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.3e-18 Score=116.68 Aligned_cols=75 Identities=33% Similarity=0.510 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988754
No 57
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.4e-18 Score=117.92 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=73.0
Q ss_pred cceeEEEEeccCc--eeEEEeeccccHHHHHHHhcccc--CCCCCceEEEEcCeecCCCCccccc--CCCCCCEEEEEEE
Q 026940 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~--~~~i~v~~~~tV~~lK~~i~~~~--~~~~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~~~ 224 (230)
..|.|+|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+|+.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3578999988888 56666779999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ecCCCC
Q 026940 225 LRGGDF 230 (230)
Q Consensus 225 ~~gg~~ 230 (230)
++||.+
T Consensus 86 ~~gg~~ 91 (93)
T 1wgd_A 86 VKSGPS 91 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999863
No 58
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.5e-18 Score=115.29 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=70.8
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCee-cCCCCcccccCCCCCCEEEEEEE
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~-L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.-|+|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+++|++|||++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 358999999999999999999999999999999999999999999999999 99999999999999999999875
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.76 E-value=2.4e-18 Score=129.14 Aligned_cols=124 Identities=65% Similarity=0.873 Sum_probs=93.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+.+.+++++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||.+++++|++++..++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred EEec-cC--eeEeeecCCCChHHHHHHHHHhHhCCC-CCCcEEEecCcccCC
Q 026940 81 VKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED 128 (230)
Q Consensus 81 v~~~-~g--~~~~i~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d 128 (230)
|+.. .| ....+.+.++.++.+-.+. ..+. -+..++.|.-+.|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~----~~i~~~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETS----IKLEMDQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGC----BEEEESSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccc----eEEecCCcceEEEhHHHHHH
Confidence 5432 22 2345666666555322211 1111 133456666665544
No 60
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.7e-18 Score=117.52 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+| ++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||.++++|++++++.+
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 6899999987 999999999999999999999999999999999999999999 9999999999999999988754
No 61
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.6e-18 Score=116.36 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+.+++++++||++||++|+.. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998765
No 62
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.76 E-value=2.1e-18 Score=118.23 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCceeEE
Q 026940 157 VKTLTGKTITL 167 (230)
Q Consensus 157 v~~~~~~~~~i 167 (230)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88877665443
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.76 E-value=1.9e-18 Score=120.45 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=69.7
Q ss_pred eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026940 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||+ ++++|++++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45666666665 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCC
Q 026940 225 LRGGDF 230 (230)
Q Consensus 225 ~~gg~~ 230 (230)
.||.|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 77754
No 64
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=1.5e-18 Score=117.67 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.8
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
|.|+|++..|+++.+++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|||++|++|+|.+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999874
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.76 E-value=2.9e-18 Score=118.89 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=69.3
Q ss_pred eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026940 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666666655 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 026940 225 LRGGDF 230 (230)
Q Consensus 225 ~~gg~~ 230 (230)
. +|.|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 5543
No 66
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=121.04 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 67
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.8e-18 Score=115.57 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=71.7
Q ss_pred CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|+..+| +++.+ ++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999999 79999 5999999999999999999999999999999999999999999999999999999887543
No 68
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=3.2e-18 Score=114.26 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||++||++|+.. +|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..+.+
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999987653
No 69
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=2e-18 Score=120.91 Aligned_cols=80 Identities=33% Similarity=0.459 Sum_probs=75.5
Q ss_pred ecceeEEEEec---cCceeEEEeec-cccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~---~~~~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
++.|.|+|+.. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 45678888887 78999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026940 226 RGGD 229 (230)
Q Consensus 226 ~gg~ 229 (230)
+||.
T Consensus 105 ~GGk 108 (111)
T 1we6_A 105 RSGP 108 (111)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9996
No 70
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=2.9e-18 Score=120.05 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988653
No 71
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.75 E-value=2.6e-18 Score=119.18 Aligned_cols=73 Identities=30% Similarity=0.450 Sum_probs=70.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccc-------ccceeeeee
Q 026940 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~-------~~~i~l~~~ 72 (230)
|.||++...++ ++.+++.+++||.+||++|+...|+||++|+|+|+|+.|+|++||++|||.+ ++++||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 88999999887 8899999999999999999999999999999999999999999999999999 999999987
Q ss_pred e
Q 026940 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 72
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=2.2e-18 Score=117.78 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|.|+.||++|+|.++++|+++++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 73
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.75 E-value=2.4e-18 Score=117.08 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.1
Q ss_pred CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||+.+|+.|++ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|++.++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998877 556999999999999 9999999999999999999999999999999 999999998764
No 74
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.75 E-value=4.6e-18 Score=127.58 Aligned_cols=77 Identities=96% Similarity=1.316 Sum_probs=73.3
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999984
No 75
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=4.9e-18 Score=111.17 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++||+.+|+++++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999987653
No 76
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=115.88 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7899998 899999999999999999999999999999999999999999999999999999999999988653
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.74 E-value=2.4e-18 Score=130.46 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=78.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988777776
Q ss_pred EE
Q 026940 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 64
No 78
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.60 E-value=9.8e-20 Score=119.07 Aligned_cols=74 Identities=34% Similarity=0.600 Sum_probs=71.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 79
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.74 E-value=8.2e-18 Score=118.55 Aligned_cols=70 Identities=29% Similarity=0.586 Sum_probs=67.2
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||..
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk~ 113 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGPS 113 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCCS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999963
No 80
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=111.61 Aligned_cols=76 Identities=39% Similarity=0.684 Sum_probs=71.6
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
..|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4588999988899999999999999999999999999999999999999999999999999999999999998753
No 81
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.74 E-value=4.6e-18 Score=118.46 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=67.9
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccc-------cccceeeeee
Q 026940 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~-------~~~~i~l~~~ 72 (230)
|++||+...|+ ++++++++++||.+||++|+.++|||+++|+|+|+|+.|+|++||++|||. .+++++|+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 88999998876 599999999999999999999999999999999999999999999999999 6899998876
No 82
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.74 E-value=6.6e-18 Score=128.05 Aligned_cols=82 Identities=89% Similarity=1.190 Sum_probs=78.0
Q ss_pred EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
...+.|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++|
T Consensus 101 ~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 101 TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026940 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|.
T Consensus 181 G~ 182 (189)
T 3q3f_A 181 GG 182 (189)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 83
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.6e-17 Score=113.05 Aligned_cols=76 Identities=29% Similarity=0.567 Sum_probs=71.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccc---cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|.|+|+..+|+.+.+++++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+...|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 678999999999999999999999999999999 7899999999999999999999999999999999999876543
No 84
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.58 E-value=2.1e-19 Score=117.46 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
|.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 578899889999999999999999999999999999999999999999999999999999999999999999987
No 85
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=114.91 Aligned_cols=78 Identities=33% Similarity=0.435 Sum_probs=73.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.++++|.
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 4588999988876 79999999999999999999999999999999999999999999999999999999999999874
No 86
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.73 E-value=2.2e-17 Score=110.10 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=70.7
Q ss_pred ecceeEEEEeccCceeEEEeeccccHHHHHHHhccc---cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
+..|.|+|+..+|+.+.+++++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+..
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 356899999999999999999999999999999998 88999999999999999999999999999999999988743
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=2.2e-18 Score=118.31 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.6
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC---------------CceEEEEcCeecC-CCCcccccCCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK 215 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~---------------~~q~L~~~g~~L~-d~~tL~~~~i~~ 215 (230)
.|.|+|+..+|++++++|++++||++||++|+++.++|+ ++|+|+|+|+.|. |++||++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 489999999999999999999999999999999999887 4579999999995 679999999999
Q ss_pred CCEEEEEEEecCC
Q 026940 216 ESTLHLVLRLRGG 228 (230)
Q Consensus 216 ~~~i~l~~~~~gg 228 (230)
|++|+|+.+++|.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999999875
No 88
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-18 Score=118.55 Aligned_cols=93 Identities=31% Similarity=0.514 Sum_probs=67.0
Q ss_pred CccHhhhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcc
Q 026940 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 129 ~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL 208 (230)
..++++|.|.. +.++.....-.+.|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 34678888764 444444444456778886 889999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEE
Q 026940 209 ADYNIQKESTLHLVLR 224 (230)
Q Consensus 209 ~~~~i~~~~~i~l~~~ 224 (230)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998764
No 89
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.73 E-value=2.5e-17 Score=112.08 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=69.3
Q ss_pred ecceeEEEEeccCceeEEE--eeccccHHHHHHHh-ccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEEe
Q 026940 150 RGGMQIFVKTLTGKTITLE--VESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~--v~~~~tV~~lK~~i-~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~ 225 (230)
...|.|+|++.+|+.++++ +++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 4668999999999987775 55999999999999 8888999999999999999999999999999 999999998864
No 90
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=8e-18 Score=112.04 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.4
Q ss_pred eeEEEEeccCceeEEEee--ccccHHHHHHHh-ccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEEe
Q 026940 153 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~--~~~tV~~lK~~i-~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~ 225 (230)
|.|+|++.+|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++..+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 689999999999988866 999999999999 9999999999999999999999999999999 699999998763
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=5.5e-18 Score=115.71 Aligned_cols=78 Identities=27% Similarity=0.333 Sum_probs=73.7
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||.
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 3478888877 89999999999999999999999999999999999999999999999999999999999999999885
No 92
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=9.5e-18 Score=116.48 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988653
No 93
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.7e-18 Score=117.14 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceEEEecccccc-CCccccccccccc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~l~~~g~~l~-d~~tl~~~~i~~~ 64 (230)
|+|+|++++|+.++++|++++||++||++|++.+|+||. +|+|+|+|+.|. |+.+|++|||.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6699999999999
Q ss_pred cceeeeeeecC
Q 026940 65 STLHLVLRLRG 75 (230)
Q Consensus 65 ~~i~l~~~~~~ 75 (230)
++||++.+..+
T Consensus 88 ~~l~lv~~lr~ 98 (105)
T 1v2y_A 88 DEVSFIKKLGQ 98 (105)
T ss_dssp EEEEEEECSCS
T ss_pred CEEEEEehhcc
Confidence 99999987753
No 94
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=115.57 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=82.3
Q ss_pred ccccccceeeeeee--------cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCcc
Q 026940 60 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 60 ~i~~~~~i~l~~~~--------~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~t 131 (230)
++.+|+++++...+ ...|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 45566666666553 2469999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceEEEEEeecc
Q 026940 132 LADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~~~~~~ 152 (230)
|++|++.+|++|++.+++.+|
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999987764
No 95
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-17 Score=116.05 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=69.6
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998754
No 96
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=114.27 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 68999999886 799999999999999999999999999999999999999999999999999999999987643
No 97
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.5e-17 Score=114.39 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=74.2
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+..+|+.+.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+...+.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999877653
No 98
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=112.74 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=69.3
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceEEEeccccccCCcccccc--ccccccceeeeeeec
Q 026940 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~l~~~g~~l~d~~tl~~~--~i~~~~~i~l~~~~~ 74 (230)
|.|+|++.+|+ .+.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|.++++|||++++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999988 67777779999999999999999 9999999999999999999999999 999999999998764
No 99
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=113.28 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=69.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 68999998 89999999999999999999999999999999999999999999999999999999999988764
No 100
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.7e-17 Score=117.23 Aligned_cols=78 Identities=29% Similarity=0.364 Sum_probs=69.5
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|.+|||++|++|+++.+++||.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 3478888887 88999999999999999999999999999999999999999999999999999999999999999884
No 101
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.71 E-value=4.2e-17 Score=106.65 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.7
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|.|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7888888 8999999999999999999999999999999999999999999999999999999999998765
No 102
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.1e-17 Score=114.12 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++++++.+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 78999998 999999999999999999999999999999999999999999999999999999999999987643
No 103
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.71 E-value=6.9e-19 Score=126.39 Aligned_cols=77 Identities=96% Similarity=1.299 Sum_probs=0.5
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 56889989999999999999999999999999999999999999999999999999999999999999999999995
No 104
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=113.99 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=72.0
Q ss_pred cceeEEEEeccC----ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEe
Q 026940 151 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~ 225 (230)
..|.|+|+..++ +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ ++|++|||++|++|+++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 347788887644 6899999999999999999999999999999999999999877 79999999999999999999
Q ss_pred cCCC
Q 026940 226 RGGD 229 (230)
Q Consensus 226 ~gg~ 229 (230)
+||.
T Consensus 86 ~gg~ 89 (102)
T 1v5o_A 86 NVGL 89 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9984
No 105
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=111.52 Aligned_cols=81 Identities=30% Similarity=0.358 Sum_probs=73.0
Q ss_pred EEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
......|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 34456688999987 88899999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 026940 227 GG 228 (230)
Q Consensus 227 gg 228 (230)
+.
T Consensus 99 ~~ 100 (101)
T 2klc_A 99 NR 100 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 106
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.1e-17 Score=113.33 Aligned_cols=78 Identities=33% Similarity=0.435 Sum_probs=72.5
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|+|+..+++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|.+|||++|++|+|+.++++|.
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 3478888887775 78999999999999999999999999999999999999999999999999999999999999874
No 107
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=3.6e-17 Score=114.54 Aligned_cols=75 Identities=32% Similarity=0.445 Sum_probs=71.1
Q ss_pred CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++..+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERS 106 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCC
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 68999998 89999999998 99999999999999999999999999999999999999999999999999987643
No 108
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.69 E-value=6.1e-17 Score=110.59 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.4
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeee
Q 026940 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~ 72 (230)
|+|+|+...+ ..++++++|++||++||++|++++|+||++|||+++|+.++|+.||++||| .+|+++||++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6799999874 799999999999999999999999999999999999999999999999999 59999999874
No 109
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.69 E-value=1.4e-18 Score=124.72 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++|||.++++|++++++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 110
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.5e-17 Score=115.25 Aligned_cols=73 Identities=32% Similarity=0.418 Sum_probs=69.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 68999999 99999999999999999999999999999999999999999999999999999999999988764
No 111
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.5e-16 Score=112.12 Aligned_cols=79 Identities=25% Similarity=0.449 Sum_probs=71.9
Q ss_pred cceeEEEEeccCcee-EEEeeccccHHHHHHHh-----ccccCCCC--CceEEEEcCeecCCCCcccccCCCCC------
Q 026940 151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ 216 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~i~v~~~~tV~~lK~~i-----~~~~~~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~------ 216 (230)
..|.|.++..+|+.+ ++++++++||.+||++| +++.|+|+ ++|||+|.|+.|+|++||++|+|++|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 568899999999888 79999999999999999 56667886 79999999999999999999999998
Q ss_pred CEEEEEEEecCCC
Q 026940 217 STLHLVLRLRGGD 229 (230)
Q Consensus 217 ~~i~l~~~~~gg~ 229 (230)
++++|+++++||.
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 7899999999874
No 112
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.69 E-value=1.5e-18 Score=127.35 Aligned_cols=77 Identities=96% Similarity=1.316 Sum_probs=0.0
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 56889988999999999999999999999999999999999999999999999999999999999999999999984
No 113
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-17 Score=113.77 Aligned_cols=92 Identities=32% Similarity=0.524 Sum_probs=66.8
Q ss_pred ccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHh
Q 026940 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 54 ~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~ 133 (230)
...++|.|.. +..+.....-.+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 4567787764 444444444457777876 8899999999999999999999999999999999999999999999999
Q ss_pred hhccccCCceEEEEE
Q 026940 134 DYNIQKESTLHLVLR 148 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~ 148 (230)
+|||++|++|+++.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999998754
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.6e-17 Score=109.90 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=63.1
Q ss_pred EEEEccC----CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~----g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
+.|+..+ |+.++++|++++||.+||++|++++|+||++|+|+|+|+.|+|+.||++|+|.++++| +++++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~l 91 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLEL 91 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEE
Confidence 4455555 7799999999999999999999999999999999999999999999999999999999 44443
No 115
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.2e-17 Score=112.42 Aligned_cols=73 Identities=36% Similarity=0.503 Sum_probs=69.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+ +.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999988764
No 116
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=5.2e-17 Score=111.95 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=68.8
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+| +.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|||.++++|++..+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7999999999999999999999999999999999999999987 799999999999999987764
No 117
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=8.8e-17 Score=112.30 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceEEEeccccccCCccccccccccc--cceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~l~~~g~~l~d~~tl~~~~i~~~--~~i~l~ 70 (230)
|.|+|+++.|++++++|++++||++||++|++ ..|+ |+++|+|+|+|+.|+|+.||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 6675 6999999999999999999999999755 678888
Q ss_pred eeec
Q 026940 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7763
No 118
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=106.48 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=66.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
++++.++|+.+.+++++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++||+.++++|++...+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 56777899999999999999999999999999999999999999999999999999999999999987653
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.67 E-value=3.3e-18 Score=125.60 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++++++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998874
No 120
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.67 E-value=7.9e-17 Score=108.47 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.2
Q ss_pred CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+.+.+ ++++++||.+||++|++.+|+||++|+|+ |+|+.|+|+.+|++|+|.++++|+|...+
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 7899999 99999999999999999999999999999 99999999999999999999999998765
No 121
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.7e-16 Score=111.82 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=68.5
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceEEEeccccccCCccccccccccc------cc
Q 026940 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gi~~--~~q~l~~~g~~l~d~~tl~~~~i~~~------~~ 66 (230)
|.|+|++.+|+.+ ++++++++||.+||++| ++..|+|+ ++|+|+|+|+.|+|+.||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 67889997 89999999999999999999999988 67
Q ss_pred eeeeeeecC
Q 026940 67 LHLVLRLRG 75 (230)
Q Consensus 67 i~l~~~~~~ 75 (230)
+||++++..
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 888887753
No 122
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=109.00 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=66.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.++++.++|+++++++++++||++||++|++++||||++|+|.+ .+..|+|+.+|++|+|.+|+++||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 678888999999999999999999999999999999999999985 3334999999999999999999998765
No 123
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=108.88 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=67.3
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|.|+ +|++|||.++++|+|.....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899995 78999 6999999999999999999999999999999999999999 99999999999999987653
No 124
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=112.54 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=67.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceEEEeccccccCCcccccccccccc--ceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~l~~~g~~l~d~~tl~~~~i~~~~--~i~l~ 70 (230)
|.|+|++..|+++++++++++||++||++|++ +.|+| +++|+|+|+|+.|+|+.||++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67999999999999999999999999999999 78885 8999999999999999999999999665 67888
Q ss_pred eeec
Q 026940 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7764
No 125
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.7e-16 Score=108.58 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=68.7
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhcc------ccCC--CCCceEEEEcCeecCCCCcccccCCCCC--CEEE
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLH 220 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~--~~i~ 220 (230)
..|.|++++.+|+++++++++++||.+||++|++ +.++ |+++|||+|.|+.|+|+.||++|+|+.+ +++|
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4588999999999999999999999999999998 4564 6999999999999999999999999876 5677
Q ss_pred EEEEecCC
Q 026940 221 LVLRLRGG 228 (230)
Q Consensus 221 l~~~~~gg 228 (230)
|++|+.+.
T Consensus 95 Lvlr~~~~ 102 (116)
T 1wgh_A 95 LVARETLP 102 (116)
T ss_dssp EEECSSCS
T ss_pred EEccCCCC
Confidence 88776644
No 126
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=111.20 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=70.1
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhcc------ccCC--CCCceEEEEcCeecCCCCcccccCCCCCC--EEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHL 221 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~--~i~l 221 (230)
.|.|++++.+|+++++++++++||.+||++|++ +.|+ |+++|+|+|.|+.|+|+.||++|+|+.|+ +++|
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 378888889999999999999999999999999 6677 48999999999999999999999999776 7889
Q ss_pred EEEecCCC
Q 026940 222 VLRLRGGD 229 (230)
Q Consensus 222 ~~~~~gg~ 229 (230)
+++++++.
T Consensus 97 v~r~~~~~ 104 (125)
T 2gow_A 97 VARETLPE 104 (125)
T ss_dssp EECSCCSS
T ss_pred EecCCCCc
Confidence 99887653
No 127
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.66 E-value=4.8e-16 Score=106.13 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=65.1
Q ss_pred eeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEE
Q 026940 153 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~ 224 (230)
+.|+|+...+ .++++++++++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|++++|++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 5566666554 688999999999999999999999999999999999999999999999999 59999999875
No 128
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=108.95 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=64.5
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceEEEeccccccCCcccccc--ccccccceeee
Q 026940 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gi~~-~~q~l~~~g~~l~d~~tl~~~--~i~~~~~i~l~ 70 (230)
|.|+||+.+|+ .+++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++| +|.++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999988 6799999999999999999996 57665 999999999999999999999 99999999874
No 129
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=107.70 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=68.3
Q ss_pred eeEEEE-eccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 153 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 153 ~~i~v~-~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
+++.|+ ..+++.+.++++++.||.+||+.++...++|+++|+|+|+|+.|+|+.||.+|||++|.+|+|+.+..
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 556666 45688999999999999999999999999999999999999999999999999999999999999854
No 130
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=6.7e-16 Score=102.73 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.8
Q ss_pred EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4455678999999999999999999999999999999999999999999999999999999999988753
No 131
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.7e-16 Score=104.42 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=67.1
Q ss_pred CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceEEEeccccccC-Cccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d-~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+. .|+.+.++++++ +||.+||++|+..+|+|+++|+|+|.|+.|.| +.+|++|||.++++|++.....
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 589999999996 99999999999999999999999999999998 5689999999999999987653
No 132
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=106.23 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=64.2
Q ss_pred cceeEEEEeccCc--eeEEEeeccccHHHHHHHhccc-cCCC-CCceEEEEcCeecCCCCccccc--CCCCCCEEEEE
Q 026940 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 222 (230)
Q Consensus 151 ~~~~i~v~~~~~~--~~~i~v~~~~tV~~lK~~i~~~-~~~~-~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~ 222 (230)
..|.|+|+..+++ .+++++++++||.+||++|+++ .|.| +++|||+|+|+.|+|+.+|++| +|++|++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5588999998887 5788899999999999999986 4655 5999999999999999999999 99999999874
No 133
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=2.8e-16 Score=106.78 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=65.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+ .+|+.+.+++++++||.+||++|+..+|+|+++|+|+|.|+.|+ +.+|++|+|.++++|+|+...
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 578898 57899999999999999999999999999999999999999995 459999999999999997654
No 134
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=4.7e-16 Score=108.04 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eEEEeccccccCCcccccccccccc
Q 026940 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gi~~~~-q~l~~~g~~l~d~~tl~~~~i~~~~ 65 (230)
|+|+||..+| +.+.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++||+.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999998 899999555 599999999999999 999999 9999999999999999999999999
Q ss_pred ceeeeeeec
Q 026940 66 TLHLVLRLR 74 (230)
Q Consensus 66 ~i~l~~~~~ 74 (230)
+||++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988653
No 135
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=6.2e-16 Score=104.06 Aligned_cols=72 Identities=22% Similarity=0.452 Sum_probs=67.3
Q ss_pred ceeEEEEeccCceeEE-EeeccccHHHHHHHhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 152 GMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.|.|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|+..
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 47888884 7899999 99999999999999999999999999999 9999999999999999999999998754
No 136
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=6.7e-16 Score=105.06 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.+++++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|||.++++||++++.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8899999999999999 999999999999999988753
No 137
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.7e-15 Score=102.99 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=69.3
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|||++|++|+++.+..+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 458899998899999999999999999999999997 8999999999999998 99999999999999999886543
No 138
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=104.51 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.6
Q ss_pred CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceEEEec--cccccCCccccccccccccceee
Q 026940 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~l~~~--g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
|.|+|+++.|+.+ ++ +++|++||.+||++|++. .|+||++|+|.|. |+.|+|+.+|++|||.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988775 58 999999999999999994 8999999999976 89999999999999999999776
No 139
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=7.4e-16 Score=104.80 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=65.5
Q ss_pred ceeEEEEeccCcee-EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 152 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 152 ~~~i~v~~~~~~~~-~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.|.|+|+ ..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus 7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 3678888 478899 6999999999999999999999999999999999999999 999999999999998754
No 140
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.62 E-value=1.7e-15 Score=106.56 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=70.6
Q ss_pred CceeeEEEec----------cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceE
Q 026940 75 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~----------~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~ 144 (230)
..+.|.|+.+ +|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4556666654 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecc
Q 026940 145 LVLRLRGG 152 (230)
Q Consensus 145 l~~~~~~~ 152 (230)
+++++.+|
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99988776
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.9e-15 Score=105.01 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=69.6
Q ss_pred cceeEEEEeccC---ceeEEEeec---------cccHHHHHHHhcccc--CCCCCc-eEEEEcCeecCCCCcccccCCCC
Q 026940 151 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 151 ~~~~i~v~~~~~---~~~~i~v~~---------~~tV~~lK~~i~~~~--~~~~~~-q~L~~~g~~L~d~~tL~~~~i~~ 215 (230)
..|.|+|+..++ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 347899998888 789999554 599999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEEecC
Q 026940 216 ESTLHLVLRLRG 227 (230)
Q Consensus 216 ~~~i~l~~~~~g 227 (230)
|++|+++.+...
T Consensus 91 g~~i~lv~~~~~ 102 (107)
T 1x1m_A 91 GSTVHVLRKSWS 102 (107)
T ss_dssp TCEEEEEESSCC
T ss_pred CCEEEEEeCCCC
Confidence 999999988653
No 142
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=104.85 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=69.2
Q ss_pred EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCcee
Q 026940 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (230)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~ 78 (230)
.|.|+ ..+|..++++++++.||.+||+++...+++|+++|+|.|+|+.|.|+.||++||+++|.++||+.+..+.-.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 35555 556889999999999999999999999999999999999999999999999999999999999988754433
No 143
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3e-15 Score=101.10 Aligned_cols=80 Identities=16% Similarity=0.350 Sum_probs=75.7
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
..|.|.|+..+|+.+.+.|.+++++..|+++++++.|+|+++++|+|+|+.|.++.|+++|++++|++|+++.+++||++
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 34788889889999999999999999999999999999999999999999999999999999999999999999999953
No 144
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.61 E-value=1.6e-15 Score=100.76 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.5
Q ss_pred EEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-------ccccccCCccccccccccccceeeeee
Q 026940 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-------~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+|.|.+. ..+.+...+++++||.+||++|+..+|+||++|+|.| .|+.++|+.+|++|||.+|++||++..
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4555433 4567899999999999999999999999999999996 478899999999999999999999864
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2e-15 Score=102.18 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=61.5
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec--cc---c-ccCCccccccccccccceeee
Q 026940 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~---~-l~d~~tl~~~~i~~~~~i~l~ 70 (230)
.|+|++.++ +.+++++++++||++||++|+..+|+||++|+|+|. |+ . ++|+.+|++|||.+|++|+++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 577887665 489999999999999999999999999999999997 34 3 488999999999999999986
No 146
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.60 E-value=2.1e-15 Score=100.18 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=58.4
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-------cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..+.++..+++++||++||++|+.++|+|+++|+|+| .|+.|+|+++|++|||++|++|||+-+
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 3456789999999999999999999999999999996 478899999999999999999999854
No 147
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.2e-15 Score=101.18 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=61.9
Q ss_pred ceeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 026940 152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~--g~---~L-~d~~tL~~~~i~~~~~i~l~ 222 (230)
.++|+|+..++ +.+++++++++||++||++|+.++|+|+++|||+|. |+ .| +|+++|++|||++|++|+++
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 35667776555 478999999999999999999999999999999987 44 34 89999999999999999986
No 148
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=103.34 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=65.3
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
+|.++++.++|+++++++++++||++||++|++++|+||++|+|++ .+..|+|+.+|++|+|++|++|+++++
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence 3556666789999999999999999999999999999999999985 444499999999999999999999876
No 149
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.58 E-value=1.3e-16 Score=120.20 Aligned_cols=70 Identities=29% Similarity=0.390 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|+ ++++|||++++.+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrG 70 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLG 70 (189)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999998 8899999988743
No 150
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.2e-15 Score=99.63 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=67.1
Q ss_pred cceeEEEEeccCceeEEEeecc-----ccHHHHHHHhccccCCCCCceEEEEcCeecCC-CCcccccCCCCCCEEEEEEE
Q 026940 151 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~-----~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~i~l~~~ 224 (230)
..|.|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 347788886 578899999985 99999999999999999999999999999987 66999999999999999876
Q ss_pred ec
Q 026940 225 LR 226 (230)
Q Consensus 225 ~~ 226 (230)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 151
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.4e-15 Score=103.25 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=65.4
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
.|.|+|+ .+++++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+| .+|++|+|++|++|+|+....
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSSC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEeccc
Confidence 3677777 568899999999999999999999999999999999999999955 599999999999999876543
No 152
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=99.39 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=63.2
Q ss_pred ceeEEEEeccCcee--EE-EeeccccHHHHHHHhcc-ccCCCCCceEEEEc--CeecCCCCcccccCCCCCCEEEE
Q 026940 152 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 152 ~~~i~v~~~~~~~~--~i-~v~~~~tV~~lK~~i~~-~~~~~~~~q~L~~~--g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
.|.|+|++..|+.+ .+ ++++++||.+||++|++ +.|+|+++|+|+|. |+.|+|+.+|++|||++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 37899999988775 58 89999999999999999 57999999999966 89999999999999999999875
No 153
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.57 E-value=4.7e-15 Score=120.16 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+.++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 154
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=2.2e-14 Score=96.08 Aligned_cols=80 Identities=16% Similarity=0.387 Sum_probs=75.5
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
..+.|.|+..+|+.+.+.|.+++++..|+++++++.|+++++++|+|+|+.|.++.|+++|++.+|++|.++..++||+.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence 34778888889999999999999999999999999999999999999999999999999999999999999999999963
No 155
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=7.3e-15 Score=99.65 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc---c----ccCCccccccccccccceeeee
Q 026940 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~---~----l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.++|++... ..+++++++++||++||++|+..+|+||++|+|+|.|+ . ++|+++|++|+|.+|++|+++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567776544 47899999999999999999999999999999999873 2 4889999999999999999874
No 156
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.55 E-value=1.2e-14 Score=117.83 Aligned_cols=78 Identities=92% Similarity=1.273 Sum_probs=71.9
Q ss_pred eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 226 (230)
..+.|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+|++|+|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999999875
No 157
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=7.9e-15 Score=101.74 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.8
Q ss_pred CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEeccc-----------c----ccCCccccccccccc
Q 026940 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-----------~----l~d~~tl~~~~i~~~ 64 (230)
|.|+|++.+|.. .++++ +++||.+||++|+..+|+|+++|+|++.|+ . ++|+.+|++|||.+|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999866 79999 999999999999999999999999998887 4 578899999999999
Q ss_pred cceeeeeee
Q 026940 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999998654
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=1e-14 Score=98.97 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=61.1
Q ss_pred eeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
+++.|..... ..+++++++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|+|++|++|+++-
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 4566665443 4789999999999999999999999999999999987 33 4899999999999999998864
No 159
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.55 E-value=4.3e-16 Score=117.28 Aligned_cols=72 Identities=29% Similarity=0.412 Sum_probs=0.5
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
|.|+|++.+|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|+ ++++|+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 578999999999999999999999999999999999999999999999999999998 999999999999985
No 160
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.53 E-value=2.1e-14 Score=101.98 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.7
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---c---c-ccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~---~-l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++.++. .+++++++++||++||++|+..+|+||++|+|+|.| + . ++|+.+|++|||.+|++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35778776543 689999999999999999999999999999999987 3 2 47889999999999999999863
No 161
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.51 E-value=2e-14 Score=119.71 Aligned_cols=79 Identities=30% Similarity=0.568 Sum_probs=73.0
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhcc---ccCCCCCceEEEEcCeecCCCCcccccCCCCCCEE-EEEEEec
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~---~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i-~l~~~~~ 226 (230)
..|.|+|+..+|+++.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+++|.+|||++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 3588999999999999999999999999999999 67799999999999999999999999999999998 7888887
Q ss_pred CCC
Q 026940 227 GGD 229 (230)
Q Consensus 227 gg~ 229 (230)
+|.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 763
No 162
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=2.7e-14 Score=96.99 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.7
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---cc----ccCCccccccccccccceeeee
Q 026940 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~----l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
.|+|+..+.. .+++++++++||++||++|+..+|+||++|+|+|.| +. ++|+.+|++|||.++++||+..
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5777776543 689999999999999999999999999999999986 33 5889999999999999999875
No 163
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.50 E-value=8.6e-14 Score=93.81 Aligned_cols=78 Identities=17% Similarity=0.387 Sum_probs=71.2
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..+.|.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.+|++|+++.+++||
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 346788888889999999999999999999999999999999999999999999999999999999999999999998
No 164
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=5.2e-14 Score=95.55 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.1
Q ss_pred eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
+.+.|+..... .+++++++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|||++|++|+++-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56666655443 688999999999999999999999999999999976 43 5899999999999999998764
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.50 E-value=2.7e-14 Score=118.93 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=68.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceEEEeccccccCCccccccccccccce-eeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i-~l~~~~~ 74 (230)
|+|+||+.+|+.|.++|++++||.+||.+|+. +.|+|+++|+|+|.|+.|+|+++|++|+|.++++| +++.++.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999 67899999999999999999999999999999998 6665553
No 166
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.48 E-value=1.4e-13 Score=97.67 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=62.7
Q ss_pred ceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---e---e-cCCCCcccccCCCCCCEEEEEE
Q 026940 152 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~---~-L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
.+.|.|+..++. .+++++++++||++||++|+..+|+|+++|+|+|.| + . ++|+++|++|||++|++|+++-
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 356777765443 688999999999999999999999999999999977 3 2 4899999999999999999886
Q ss_pred E
Q 026940 224 R 224 (230)
Q Consensus 224 ~ 224 (230)
.
T Consensus 86 ~ 86 (122)
T 1t0y_A 86 V 86 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.1e-13 Score=94.89 Aligned_cols=79 Identities=15% Similarity=0.353 Sum_probs=74.7
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..+.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+.+|++.+|++|+++.+++||+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 3467888888899999999999999999999999999999999999999999999999999999999999999999996
No 168
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.46 E-value=6.4e-14 Score=93.34 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.3
Q ss_pred CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEec--ccccc---CCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~~l~---d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|+|+|++.+|+. .++ +++++||.+||++|++.+|+|+++|+|.++ ++.++ ++.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999865 477 999999999999999999999999999986 46764 678999999999999998754
No 169
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.45 E-value=3.3e-13 Score=92.57 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=70.5
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
..|.|.|+. +|+...+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|.++|++.+|++|.++.+++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 347788888 89999999999999999999999999999999999999999999999999999999999999999998
No 170
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=2.4e-13 Score=91.73 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|+|+..+|+.+.+.|.+++++..|+++++++.|+|+.+|+|+|+|+.|.++.|+++|++.++++|+++++..++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999876543
No 171
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.44 E-value=7.6e-14 Score=96.76 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=64.7
Q ss_pred eeEEEEeccCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcCe-----------e----cCCCCcccccCCCCC
Q 026940 153 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 216 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~-----------~----L~d~~tL~~~~i~~~ 216 (230)
|.|.|++.+|+. .++++ +++||.+||++|++++|+|+++|+|++.|+ . ++|+++|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 788999888866 78999 999999999999999999999999998887 3 588999999999999
Q ss_pred CEEEEEEE
Q 026940 217 STLHLVLR 224 (230)
Q Consensus 217 ~~i~l~~~ 224 (230)
++|+|...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998766
No 172
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.40 E-value=3.1e-13 Score=93.41 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=74.4
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..|.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++++++|+|.|+.|.++.|+.+|++.+|++|.++..++||.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 4477888888999999999999999999999999999999999999999999999999999999999999999999984
No 173
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.40 E-value=3.1e-13 Score=110.99 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=66.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|.||. +|+.+++++++++||++||++|++.+||||++|+|+ |.|+.|.|+.+|++|||++|++++|...+..
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4688885 799999999999999999999999999999999999 8999999999999999999999999877654
No 174
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.40 E-value=1.5e-12 Score=83.52 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=66.9
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
+.|.|+..+|+.+.+.+.+++++..|+++.+++.|+++++++|+|+|+.|.++.|.++|++.+|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5788888899999999999999999999999999999999999999999999999999999999999986
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.38 E-value=1.5e-12 Score=83.62 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|++++++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999885
No 176
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=1.8e-12 Score=86.74 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+.+++|+|+|+.|.++.|++++++.++++|+++....+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 578899999999999999999999999999999999999999999999999999999999999999999987643
No 177
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.37 E-value=5.3e-13 Score=88.84 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=61.7
Q ss_pred eeEEEEeccCceeEEE-eeccccHHHHHHHhccccCCCCCceEEEEc--CeecC---CCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|.|.|+..+|+. .++ +++++||.+||+.|++++|+|+++|+|+|+ ++.++ |+++|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 568899888865 477 999999999999999999999999999975 47774 688999999999999987644
No 178
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.37 E-value=6.9e-13 Score=108.88 Aligned_cols=72 Identities=22% Similarity=0.460 Sum_probs=64.9
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.++|+|+ .+|+++++++++++||++||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|+-.
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 3677888 5899999999999999999999999999999999999 8999999999999999999999998744
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=5e-12 Score=85.13 Aligned_cols=74 Identities=15% Similarity=0.354 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|++++++.++++|++++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 56889988999999999999999999999999999999999999999999999999999999999999988754
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=7.1e-12 Score=81.80 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=67.3
Q ss_pred cceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 151 ~~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
..+.|.|+..+|+ .+.+.+.+++++..|+.+++++.|+++++++|+|.|..|.++.|.++|++.+|++|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3477888888896 89999999999999999999999999999999999999999999999999999999885
No 181
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=7.3e-12 Score=85.79 Aligned_cols=74 Identities=15% Similarity=0.354 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~ 74 (230)
|.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++.+++|+|+|+.|.++.|++++++.++++|++++...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999988764
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.30 E-value=8.5e-12 Score=81.44 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.8
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|+++++++|+|+|+.|.++.|++++++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999875
No 183
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.29 E-value=7.4e-12 Score=86.48 Aligned_cols=80 Identities=15% Similarity=0.395 Sum_probs=74.9
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++....+|.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999888775
No 184
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.26 E-value=1.1e-11 Score=85.03 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=71.1
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+. +|+.+.+.+..++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.++..+|
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3458899999 99999999999999999999999999999999999999999999999999999999999999877653
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.26 E-value=3.6e-11 Score=81.72 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=60.4
Q ss_pred eeEEEEe---ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC-------eec-CCCCcccccCCCCCCEEEE
Q 026940 153 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~---~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g-------~~L-~d~~tL~~~~i~~~~~i~l 221 (230)
+++.|+. .+++.+...+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|..+|.+||+.+|++|++
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 3455543 3577889999999999999999999999999999999763 225 6889999999999999988
Q ss_pred EEE
Q 026940 222 VLR 224 (230)
Q Consensus 222 ~~~ 224 (230)
.-.
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 754
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=2.1e-11 Score=82.96 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=61.0
Q ss_pred EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-------ccc-cCCccccccccccccceeee
Q 026940 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-------~~l-~d~~tl~~~~i~~~~~i~l~ 70 (230)
.|+|++ .+|..+...+++++||++||.+|+..+|+|+..|+|.+.+ ..| +|..+|+.||+.+|++||+.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 4678999999999999999999999999999999999863 224 56789999999999999987
Q ss_pred ee
Q 026940 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=2.5e-10 Score=78.95 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=71.0
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
..+.|.|+..+|....+.+.+++++..|+...+++.|++++.++|.|+|..|.++.|..++++.+|++|.++..+-|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34677788888888999999999999999999999999999999999999999999999999999999999987654
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.2e-10 Score=85.30 Aligned_cols=78 Identities=12% Similarity=0.261 Sum_probs=72.4
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..+.|.|. .+|..+.+.|.+++++..|+...+++.|+++..++|.|+|..+.++.|..++++.+||+|.++..+.||.
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 34667776 4788999999999999999999999999999999999999999999999999999999999999999995
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.06 E-value=6.6e-10 Score=84.45 Aligned_cols=78 Identities=13% Similarity=0.299 Sum_probs=72.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
..+.|.|+ .+|+...+.+.+++++..|+...+++.|++++++||.|+|+.+.++.|..++++.+|++|.++..+.||.
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 33566776 4788999999999999999999999999999999999999999999999999999999999999999984
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.6e-09 Score=74.85 Aligned_cols=75 Identities=16% Similarity=0.375 Sum_probs=70.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..+.|.|+..+|..+.+.+..++++..|+...+++.|+++..++|+|+|+.|.++.|.+++++.+|++|.+....
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 457888888889999999999999999999999999999999999999999999999999999999999988654
No 191
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.93 E-value=1.3e-10 Score=87.72 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=1.9
Q ss_pred eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+...|.|.| ..+|+...+.+.+++++..|++..+++.|++++.+||.|+|+.+.++.|.+++++.+||+|.++..+.||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 344567777 6688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026940 229 DF 230 (230)
Q Consensus 229 ~~ 230 (230)
+.
T Consensus 97 ~~ 98 (227)
T 3v7o_A 97 LT 98 (227)
T ss_dssp CC
T ss_pred ch
Confidence 63
No 192
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.89 E-value=1.6e-08 Score=63.66 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=63.3
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
++.+++.....+.+.++++++|.+|-+..+.+.|+|++ .++|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45556566677899999999999999999999999999 89999999999999999999999999998874
No 193
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.6e-08 Score=76.75 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=72.2
Q ss_pred ecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...+.|.|+ .+|....+.+.+++++..|+...+++.|+++..++++|+|+.+.++.|.+++++.+|++|++.....++
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 3456788886 488899999999999999999999999999999999999999999999999999999999999887654
No 194
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.80 E-value=4e-09 Score=68.70 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc---c--cCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~---l--~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.+.|++.+| .+.+++++++|+.+|+++|.+.++++++.|.+++.-.+ | .++.+|+++||.+|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788888875 77888999999999999999999999999988865433 3 36789999999999998875
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.79 E-value=6e-09 Score=77.61 Aligned_cols=100 Identities=12% Similarity=0.286 Sum_probs=72.9
Q ss_pred Cccccccccccccceeee--eeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCc
Q 026940 53 GRTLADYNIQKESTLHLV--LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130 (230)
Q Consensus 53 ~~tl~~~~i~~~~~i~l~--~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~ 130 (230)
..+|++-+...+..-..- ..+...+.|.|. .+|..+.+.|..++++..|+...+++.|+++..++++|+|+.+.++.
T Consensus 32 ~~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~dd 110 (207)
T 3tix_A 32 TGSLQDSEVNQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQ 110 (207)
T ss_dssp -----------------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSC
T ss_pred cccccccccCCCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCC
Confidence 344555444443333222 223455788886 48889999999999999999999999999999999999999999999
Q ss_pred cHhhhccccCCceEEEEEeecce
Q 026940 131 TLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 131 tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
|..++++.+|++|+++....+|.
T Consensus 111 TPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 111 TPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CTTTTTCCTTEEEEECCCCCTTG
T ss_pred CHHHcCCCCCCEEEEEEeccCCC
Confidence 99999999999999999888773
No 196
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.71 E-value=8.8e-08 Score=60.35 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.+.++......+.+.+.++.+|.+|-...+.+.+||++ ..+|.|.|..|+.+.++++|++.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 445566666777999999999999999999999999999 89999999999999999999999999998764
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.65 E-value=3.1e-09 Score=80.21 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=1.2
Q ss_pred eeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+.+...|.|+| ..+|....+.+.+++++..|+...+++.|++++.++++|+|+.+.++.|.+++++.+|++|+++....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456688888 67899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cce
Q 026940 151 GGM 153 (230)
Q Consensus 151 ~~~ 153 (230)
+|.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 774
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.62 E-value=2e-07 Score=62.57 Aligned_cols=72 Identities=13% Similarity=0.278 Sum_probs=65.0
Q ss_pred cceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940 151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 151 ~~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 222 (230)
..+.|.|+..++. ...+.+.+++++..|....+++.|++++..+|.|.|..+.++.|..++++.+|++|.++
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3466777777774 78999999999999999999999999999999999999999999999999999999875
No 199
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.59 E-value=6.3e-08 Score=62.98 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=58.0
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc---c--CCCccHhhhccccCCceEEE
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~---L--~d~~tL~~~~i~~~~~i~l~ 146 (230)
.|.+.++..+| .+.+++++++|+.+|+++|++.++++++.+.+.+.... + .++.+++++|++.|+.|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788888887 57788999999999999999999999888877754433 3 47789999999999999764
No 200
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.57 E-value=2.2e-07 Score=61.66 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc--CCcccccc
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADY 59 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~--d~~tl~~~ 59 (230)
.+..+.+.+++++||..+|++|++++||||++|+|+|.|+.+. ++..-..|
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~ 74 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 74 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGS
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccC
Confidence 5788999999999999999999999999999999999996654 44333444
No 201
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.56 E-value=2.2e-07 Score=71.75 Aligned_cols=81 Identities=12% Similarity=0.309 Sum_probs=72.9
Q ss_pred EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
.....+.|.|.. .++...+.+..++++..|+++.+++.|+++++++|.|.|..+.++.|..++.+.++++|.+..++.|
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 344556677775 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026940 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|.
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 202
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.51 E-value=6.3e-07 Score=60.13 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=66.4
Q ss_pred cCceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940 74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
...+.|.|+..+|. .+.+.+..++++..|....+++.|+++...+++|+|..+.++.|..++++.+|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34577888888884 78999999999999999999999999999999999999999999999999999999764
No 203
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.50 E-value=7.6e-06 Score=68.63 Aligned_cols=143 Identities=23% Similarity=0.331 Sum_probs=110.5
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC----CCCCCcEEEe------cCcccCCCccHhhhccccCCceEEEE
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.+.|... +.+-++.++++.||.+....|.++.. .++++.-|++ +|.-|++.++|..|++.+++.+....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444444 67788999999999999999988874 3577778887 33458888899999999999886654
Q ss_pred EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEcC---------eecCCCCcccccCCCCCC
Q 026940 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKES 217 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~g---------~~L~d~~tL~~~~i~~~~ 217 (230)
..+.+.|..++|....+.+++++|+.++-..|+.+.|+.. +.+-|.+.. .-|+..+++.+.+.....
T Consensus 84 ---~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 ---KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred ---ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 3367889999999999999999999999999999999753 445665421 234567788887777777
Q ss_pred EEEEEEE
Q 026940 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~l~~~ 224 (230)
++++..|
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 7766555
No 204
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.47 E-value=1.9e-08 Score=82.76 Aligned_cols=81 Identities=12% Similarity=0.295 Sum_probs=0.5
Q ss_pred EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g 227 (230)
.+...+.|.|+. .|+...+.+.+++++..|+++.+++.|++++.+++.|+|+.+.++.|.+++++++||+|.++..+.|
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 344456777775 5778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026940 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|.
T Consensus 96 ~~ 97 (360)
T 3ix6_A 96 GM 97 (360)
T ss_dssp -C
T ss_pred hH
Confidence 94
No 205
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.45 E-value=5.4e-07 Score=58.94 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
++|.+.|-..+++...+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+++.++..-
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999998653
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.35 E-value=2.4e-06 Score=56.38 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=65.1
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
+.|.|+ ..|....+.+..++....|....+++.|++++..++.|.|..+.++.|.+++++.+|++|.++.-
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 566677 46888999999999999999999999999999999999999999999999999999999988753
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.29 E-value=3.5e-06 Score=55.10 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=67.9
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+|.|.|-..+++...+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+++.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46788888899999999999999999999999999999999999999999999999999999999999988754
No 208
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.29 E-value=4.4e-06 Score=55.12 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=66.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..+.|.|+. +|....+.+..++....|....+++.|++++..+++|.|..+.++.|.+++++.+|++|.++..
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 347788874 7888999999999999999999999999999999999999999999999999999999988753
No 209
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.29 E-value=2.5e-06 Score=56.58 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=53.6
Q ss_pred EEEEecc-CceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec--CCCCcccccCC-CCCCEEEEEEE
Q 026940 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI-QKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~-~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L--~d~~tL~~~~i-~~~~~i~l~~~ 224 (230)
|+|-+.+ +..+.+.+.+++|+..+|++|++++|+|+++|+|+|.|+.| +.+++-..|-- ....-|.++-+
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 4444443 67789999999999999999999999999999999999755 55555556543 45556666554
No 210
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.23 E-value=3.3e-05 Score=67.61 Aligned_cols=183 Identities=11% Similarity=0.209 Sum_probs=129.7
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-c------c-ccC-----Cccccccccccccceeeeeee------
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-K------Q-LED-----GRTLADYNIQKESTLHLVLRL------ 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-~------~-l~d-----~~tl~~~~i~~~~~i~l~~~~------ 73 (230)
.++.|...+|+.+||+.|.+.+|+|+++|||+... + + +.+ ..++.++.- .++.+.+++..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 36799999999999999999999999999999531 1 0 111 122333211 23333333321
Q ss_pred -----------cCceeeEEEecc--CeeE----eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC------cccC-CC
Q 026940 74 -----------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLE-DG 129 (230)
Q Consensus 74 -----------~~~~~v~v~~~~--g~~~----~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~-d~ 129 (230)
.+.+-|++|..+ .+.+ .+-++.+++|++|-..|.+..|+|++.-..+|.- ..|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 113666776554 2333 3568889999999999999999999876655542 3466 57
Q ss_pred ccHhhh--ccccCCceEEEEEee-c-----------------ceeEEEEe---ccCceeEEEeeccccHHHHHHHhcccc
Q 026940 130 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 186 (230)
Q Consensus 130 ~tL~~~--~i~~~~~i~l~~~~~-~-----------------~~~i~v~~---~~~~~~~i~v~~~~tV~~lK~~i~~~~ 186 (230)
.|+.+. .+.+|+.|-+-.... . .+.|..+. .+...+.++++...|-.++-++|+++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999987665433 1 13444443 235669999999999999999999999
Q ss_pred CCCCCceEEE
Q 026940 187 GIPPDQQRLI 196 (230)
Q Consensus 187 ~~~~~~q~L~ 196 (230)
++.|...||.
T Consensus 277 ~~dP~~lRf~ 286 (530)
T 2ylm_A 277 NTDPMLLQFF 286 (530)
T ss_dssp TSCGGGEEEE
T ss_pred CCCchhEEEE
Confidence 9999998886
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.23 E-value=1.4e-07 Score=77.63 Aligned_cols=83 Identities=13% Similarity=0.317 Sum_probs=0.4
Q ss_pred eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|.|+. +|+...+.+..++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.+....
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34455667788876 67888999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecce
Q 026940 150 RGGM 153 (230)
Q Consensus 150 ~~~~ 153 (230)
.+||
T Consensus 94 ~g~~ 97 (360)
T 3ix6_A 94 IGGM 97 (360)
T ss_dssp ---C
T ss_pred CchH
Confidence 7664
No 212
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.23 E-value=5e-05 Score=63.61 Aligned_cols=134 Identities=24% Similarity=0.358 Sum_probs=102.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceEEEec------cccccCCccccccccccccceeeeeeecCceee
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~l~~~------g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
+-+-++.++|+.||.|+...|.++.. .++++--|++. |.=|.+.++|..|++.++..+.....+ +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 67889999999999999999988774 35666678873 233788889999999999988876544 788
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEecC---------cccCCCccHhhhccccCCceEEE
Q 026940 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g---------~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.|..++|....+.++..+|+.++-..|+++.|+... ..-|.+.. .-|+.++++.+.+.....++++.
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 899999999999999999999999999999997643 34555421 23455666776665444444443
No 213
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.20 E-value=1.9e-07 Score=78.96 Aligned_cols=77 Identities=12% Similarity=0.328 Sum_probs=0.0
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.+.|.|+. .+....+.+..++++..|++..+++.|+++++++|.|+|+.+.++.|..++++.+|++|.++..+.||.
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 35566665 667888999999999999999999999999999999999999999999999999999999999999984
No 214
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.19 E-value=2.4e-06 Score=65.82 Aligned_cols=82 Identities=12% Similarity=0.303 Sum_probs=71.5
Q ss_pred eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|.|.. +|+.+.+.+..++++..|+...+++.|++++.++++|.|+.+.++.|..+..+.+++.|.+....
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 34445667888876 77788999999999999999999999999999999999999999999999999999999998766
Q ss_pred ecc
Q 026940 150 RGG 152 (230)
Q Consensus 150 ~~~ 152 (230)
.++
T Consensus 94 ~Gg 96 (209)
T 3uf8_A 94 IGG 96 (209)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.14 E-value=3.6e-06 Score=59.11 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=58.1
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-c------------------------------------eEEE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-Q------------------------------------QRLI 196 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~------------------------------------q~L~ 196 (230)
.+.|+.++|...++.|+.+.||.+++..|+.+.|++.. . ++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999998643 2 2221
Q ss_pred E--cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 197 F--AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 197 ~--~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
. .+.-|++++||.++||.++++|.|..|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 124568899999999999999877665
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.04 E-value=7.2e-06 Score=57.57 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=56.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceEEEe
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-------------------------------------~q~l~~ 45 (230)
+.|+.++|...++.|+.+.||.+++..|+.+.||++. +|+|-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999965 333322
Q ss_pred --ccccccCCccccccccccccceeeee
Q 026940 46 --AGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 46 --~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
...-|++..||.++||.+++++.|.-
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 11346778999999999999977654
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.03 E-value=1.8e-05 Score=51.03 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=55.0
Q ss_pred eEEEEe--ccCceeEEEeeccccHHHHHHHhccccCCCC--C---ceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940 154 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--D---QQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 154 ~i~v~~--~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~---~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 221 (230)
.|++.. ..++.+.+.++...||.+|++.+.+-++++. . ..+..-++..|.++.+|++|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 344443 4689999999999999999999999988643 2 234446788999999999999999999865
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.87 E-value=8.8e-05 Score=48.41 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.7
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~~ 223 (230)
..|.++..+|+.+.-.++.++||.+|..-|.. .+.++..+.|. |..+.+ +.++||.+.|+.++++|.+--
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 46788888999999999999999999999987 56778888888 667877 457899999999999998754
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.85 E-value=2.1e-06 Score=72.49 Aligned_cols=82 Identities=11% Similarity=0.320 Sum_probs=0.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeeccee
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
..+.|+|.. ++....+.+..++++..|+...+++.|+++..++++|+|+.+.++.|..++++.+|++|.+.....++..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 346667765 6778889999999999999999999999999999999999999999999999999999999988776654
Q ss_pred EEE
Q 026940 155 IFV 157 (230)
Q Consensus 155 i~v 157 (230)
...
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 443
No 220
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.82 E-value=0.0036 Score=54.72 Aligned_cols=210 Identities=10% Similarity=0.118 Sum_probs=143.5
Q ss_pred EEEEEccCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEec------ccccc-CCcccccc--ccccccc
Q 026940 2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~------g~~l~-d~~tl~~~--~i~~~~~ 66 (230)
-||+|..+- .++ .+.++..++|.+|-..|.+..|+|+.....+|. ...|+ .+.|+.+. .+.+|+.
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI 211 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI 211 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE
Confidence 467776642 232 257899999999999999999999987776665 35577 57899999 9999999
Q ss_pred eeeeeeec------------------CceeeEEEe---ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ec--
Q 026940 67 LHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA-- 122 (230)
Q Consensus 67 i~l~~~~~------------------~~~~v~v~~---~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~-- 122 (230)
|.+-.... ..+.|.++. .+...|.++++...|-.++-++|+++.++.|...++. .+
T Consensus 212 I~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~ 291 (530)
T 2ylm_A 212 IVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGY 291 (530)
T ss_dssp EEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTT
T ss_pred EEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccc
Confidence 87765432 125555553 3356699999999999999999999999999998876 21
Q ss_pred -Cc---c--cCCCccHhhhccccC----CceEEEE-Ee-------ecceeEEEEeccC--ceeEEEeeccccHHHHHHHh
Q 026940 123 -GK---Q--LEDGRTLADYNIQKE----STLHLVL-RL-------RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKI 182 (230)
Q Consensus 123 -g~---~--L~d~~tL~~~~i~~~----~~i~l~~-~~-------~~~~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i 182 (230)
+. . ...+.+|.+.=.... +.++..+ .. ...+.|+....+. ..+.+-++.+.||.+|-+.+
T Consensus 292 ~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l 371 (530)
T 2ylm_A 292 RDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEEC 371 (530)
T ss_dssp SCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHH
T ss_pred cCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHH
Confidence 21 2 233456665432211 1122111 11 1234554443332 25667788899999999999
Q ss_pred ccccCCC---CCceEEE--EcCe---ecCCCCccccc
Q 026940 183 QDKEGIP---PDQQRLI--FAGK---QLEDGRTLADY 211 (230)
Q Consensus 183 ~~~~~~~---~~~q~L~--~~g~---~L~d~~tL~~~ 211 (230)
.++.+++ ....|+. ++++ .++++.++...
T Consensus 372 ~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 372 KKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp HTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred HHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 9999886 4567775 7774 55666667544
No 221
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.73 E-value=8e-05 Score=47.96 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=55.3
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC----ce-EEEeccccccCCccccccccccccceee
Q 026940 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD----QQ-RLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~----~q-~l~~~g~~l~d~~tl~~~~i~~~~~i~l 69 (230)
.|++.. ..|+.+.++++...||.+|++.+.+.++++.. .| +..-.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456654 57899999999999999999999999998763 21 2223467789999999999999998764
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.59 E-value=0.00052 Score=44.69 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=57.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc---CCccccccccccccceeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~tl~~~~i~~~~~i~l~ 70 (230)
+|-|+..+|..+.-.+..++||.+|...|.. .+.++....|. |-.+.+. .+.||.+.|+.+.+++.+-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5788999999999999999999999999998 67777777777 3356673 4689999999998887764
No 223
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.40 E-value=0.00076 Score=46.17 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.2
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..|.++..+|..+.-.++.++||.++..-|....+.+...+.|+ |..+.+. .++||.+.|+.+.++|.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 56788888999999999999999999999998877777778887 6777775 378999999999988877654
No 224
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.37 E-value=0.00087 Score=46.98 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=68.0
Q ss_pred ccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCccc--CC-
Q 026940 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED- 128 (230)
Q Consensus 54 ~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d- 128 (230)
.....+..+.+..-.-.....+...|.|+.++|..+.-.+..++||.+|..-|... +.++....|+ |-.+.+ .|
T Consensus 21 ~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~ 99 (124)
T 1wj4_A 21 EILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDY 99 (124)
T ss_dssp CSCSCCCCCCCCCCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCS
T ss_pred hhhhcCCCCCCCcccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCC
Confidence 34444444433322222233456889999999999999999999999999999887 7777788887 567777 33
Q ss_pred CccHhhhccccCCceEEE
Q 026940 129 GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 129 ~~tL~~~~i~~~~~i~l~ 146 (230)
+.+|.+.|+.+.+.+.+.
T Consensus 100 ~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 100 DITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCTTTTTCCSSBCCEEE
T ss_pred CCCHHHCCCCCceEEEEE
Confidence 789999999998888665
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.32 E-value=0.00064 Score=47.66 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=60.2
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~~ 223 (230)
...|.|+..+|..+.-.+..++||.+|..-|... +.++..+.|+ |..+.+ +.++||.+.|+.+...|.+..
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3578888889999999999999999999999887 7777888887 678888 347899999999988887654
No 226
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.16 E-value=0.0026 Score=43.48 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=58.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc---CCccccccccccccceeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|-|+..+|..+.-.+..++||.+|.+.|....+.+.....|. |-.+.+. .+.||.+.|+.+.+.+.+..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5788999999999999999999999999999988776666666 3456665 36899999999887777654
No 227
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.90 E-value=0.0044 Score=42.33 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.4
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC--CCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~--d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..|.++..+|+.+.-.+..++||.+|..-|... +..+..+.|+ |..+.+. .++||.+.|+.+..+|.+..+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 567788889999899999999999999999865 5566778887 6777775 478999999999999877543
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.0023 Score=40.88 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=55.3
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE---cCeecCCCCcccccCCCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~~L~d~~tL~~~~i~~ 215 (230)
+.+.|+....+..-+.|++..+..+|--.|+++..+.|+...|.. .+..|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 556677777888899999999999999999999999999998874 447889899999999987
No 229
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.85 E-value=0.0029 Score=48.77 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=54.7
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCC-ceEEE--E-cC--eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~--~-~g--~~L~d-~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
.+.+.++..+||.+|++.+++.++++++ ..||- + .+ ..|+| ++||.++++.++..|.+-.|..+|.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3567788999999999999999999987 57775 2 22 45655 67999999999999999999988864
No 230
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.81 E-value=0.0045 Score=48.20 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=55.4
Q ss_pred eEEEeeccccHHHHHHHhccccCCCCC-ceEEE-EcC----eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG----KQLED-GRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~-~~g----~~L~d-~~tL~~~~i~~~~~i~l~~~~~gg~~ 230 (230)
+++.++..+|+.+|++.+++.++++++ ..||- +.+ ..|.| +.||.++++.++..|.+-.+..+|.|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 456778999999999999999999987 58876 332 45654 68999999999999999999988864
No 231
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.76 E-value=0.0059 Score=38.99 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=57.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEec---CcccCCCccHhhhcccc
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~tL~~~~i~~ 139 (230)
..+++.|+....+...+.|++..+.++|--.|+++..+.|....|... +.+|+-+++|.+|||..
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456777777788889999999999999999999999999999999843 46788899999999985
No 232
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.64 E-value=0.011 Score=37.25 Aligned_cols=61 Identities=11% Similarity=0.289 Sum_probs=48.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
|+|.|+........++++++.||++|-+ ..|+|++.-....||+.+..+. +.+|+++.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 8999999855566789999999999887 8999998887778998887665 22477776654
No 233
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.56 E-value=0.041 Score=34.13 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=49.6
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.+|+|.++... ....++++...|+.+|.+.+ ++++....+..+|.....+. -+++||.|.++.-..||
T Consensus 3 ~~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 3 IGMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CCEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eeEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 34667766433 23456777778999999876 45667777779998886544 68999999888777766
No 234
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.43 E-value=0.0069 Score=42.55 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=54.3
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhcccc-CCCCCceEEE--EcCeecCC-CCcccccCCCCCCEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i 219 (230)
..|.|+..+|..+.-.++.++||.+|..-|.... +.....+.|+ |..+.++| ++||.+.|+.+...+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 5677888899999999999999999999998863 3556677777 67788864 789999999985544
No 235
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.35 E-value=0.017 Score=39.41 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=55.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc--CCccccccccccccceeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~--d~~tl~~~~i~~~~~i~l~~ 71 (230)
+|-|+..+|..+.-.+..++||.+|...|... +..+....|. |-.+.+. .+.||.+.|+.+...+.+..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 57889999999999999999999999999965 5555556665 4456675 46899999999988876653
No 236
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.17 E-value=0.017 Score=40.55 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=55.9
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEE--ecCcccCC-CccHhhhccccCCce
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 143 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i 143 (230)
+...|.|+..+|..+.-.++.++||.+|.+-|.... +.......|+ |-.+.+.| +.||.+.|+.+...+
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 457889999999999999999999999999998864 3555667777 56677865 689999999985543
No 237
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.89 E-value=0.065 Score=36.33 Aligned_cols=63 Identities=38% Similarity=0.488 Sum_probs=43.9
Q ss_pred CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEEc----CeecCCC-------------CcccccCCCCC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~~----g~~L~d~-------------~tL~~~~i~~~ 216 (230)
+..+++.|-..+||.++|++|-+.. |.| ++.+.|.|. |+.|.|. .||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4557777888999999999985533 333 345667752 3555431 48999999999
Q ss_pred CEEEEEEE
Q 026940 217 STLHLVLR 224 (230)
Q Consensus 217 ~~i~l~~~ 224 (230)
+++-++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988654
No 238
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.64 E-value=0.066 Score=37.65 Aligned_cols=65 Identities=32% Similarity=0.525 Sum_probs=46.4
Q ss_pred CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CcccccCCCC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~----~g~-~L~d~-------------~tL~~~~i~~ 215 (230)
.+.+++.|-..+||.++|++|-+.. |.| ++..-|.| .|+ .|.|. .||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568888889999999999986643 343 34556665 233 35442 3899999999
Q ss_pred CCEEEEEEEec
Q 026940 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~l~~~~~ 226 (230)
|+++.++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999987753
No 239
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.50 E-value=0.063 Score=36.40 Aligned_cols=62 Identities=39% Similarity=0.512 Sum_probs=43.7
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec----CcccCC-------------CccHhhhccccC
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLED-------------GRTLADYNIQKE 140 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d-------------~~tL~~~~i~~~ 140 (230)
+..+++.+-..+||.++|++|-+.. |.| ++...|-|. |+.|.| -.||+.|++++|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888999999999999997653 343 345667662 233433 148999999999
Q ss_pred CceEEEE
Q 026940 141 STLHLVL 147 (230)
Q Consensus 141 ~~i~l~~ 147 (230)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997753
No 240
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.36 E-value=0.061 Score=34.20 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=52.9
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
+.-.++-.+++..||+.++.+.|++-+.-.+++++..|+++++|.+.+++....+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4446777889999999999999999999999999888999999999999988887766543
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.30 E-value=0.14 Score=32.55 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=51.9
Q ss_pred eEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
+.-.++-+.++..||+.++.+.|+..+...+...+..|+++++|-+.+++-...+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445667789999999999999999999988888888999999999999987777766653
No 242
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.04 E-value=0.075 Score=40.80 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=50.6
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEE-ec-C---cccCC-CccHhhhccccCCceEEEEEee
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-G---KQLED-GRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~-~~-g---~~L~d-~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
.+.+.++..+|+.+|++.++..++++++ ..||. +. . ..|++ +.||.++++.++..|.+-.+..
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 3567889999999999999999999987 68876 22 2 34655 5799999999999887766543
No 243
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.97 E-value=0.066 Score=33.63 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=47.6
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|+|.|+........+++++..||.+|-+ ..|+|++......||+....+. +.+||.|.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 4566775544455688999999998865 5688888887778998886544 3459999776655555
No 244
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.94 E-value=0.08 Score=41.06 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=50.6
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe-cc----ccccC-Cccccccccccccceeeeeee
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~-~g----~~l~d-~~tl~~~~i~~~~~i~l~~~~ 73 (230)
.++..++..+||.+|++++...++++++ .-||+. .+ ..|.+ +.||.++++.++..|.+-++.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 3567789999999999999999999997 568874 42 44665 589999999999988887664
No 245
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.86 E-value=0.27 Score=34.01 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=45.8
Q ss_pred cCceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCC--------C-----CcccccCCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--------G-----RTLADYNIQ 214 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d--------~-----~tL~~~~i~ 214 (230)
++..+++.|-..+||.++|++|-+.. +.| ++.+.|.| .| + .|.| + .||++|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34567788888999999999985533 333 45677776 23 3 3543 1 489999999
Q ss_pred CCCEEEEEEE
Q 026940 215 KESTLHLVLR 224 (230)
Q Consensus 215 ~~~~i~l~~~ 224 (230)
+|+++-+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998765
No 246
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.76 E-value=0.12 Score=36.40 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=45.4
Q ss_pred eeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec----Cc-ccCCC-------------ccHhhhccccC
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~tL~~~~i~~~ 140 (230)
+.+++.|-..+||.++|++|-+.. +.| ++..-|-|. |+ .|.|. .||+.|++++|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998754 443 334455551 22 25442 38999999999
Q ss_pred CceEEEEEee
Q 026940 141 STLHLVLRLR 150 (230)
Q Consensus 141 ~~i~l~~~~~ 150 (230)
+++.++.+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9998876543
No 247
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.63 E-value=0.24 Score=32.76 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=48.2
Q ss_pred cceeEEEEecc------C-ceeEEEeeccccHHHHHHHhccccC-C----------CCCceEEEEcCeecCCCCcccccC
Q 026940 151 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 151 ~~~~i~v~~~~------~-~~~~i~v~~~~tV~~lK~~i~~~~~-~----------~~~~q~L~~~g~~L~d~~tL~~~~ 212 (230)
+.|+|.|+... | ....++++...||.+|.+.+...+. + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 44667777532 3 3567788778999999999877652 1 1234556678876652 567
Q ss_pred CCCCCEEEEEEEecCC
Q 026940 213 IQKESTLHLVLRLRGG 228 (230)
Q Consensus 213 i~~~~~i~l~~~~~gg 228 (230)
+++||.|.++--..||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999887766665
No 248
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.91 E-value=0.41 Score=29.74 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=41.2
Q ss_pred EEEeeccccHHHHHHHhccccCCCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.+++ ...||.+|.+.+....++.. ....+.-||....+ .+.-+++||+|.++--..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3556 56899999999987644322 44566678876432 34568999999998887776
No 249
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.90 E-value=0.062 Score=37.73 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.++.|...+|+.+|+..|.+.+|+|+++|||+.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999954
No 250
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.85 E-value=0.25 Score=34.16 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=46.0
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-C---c-ccCC-------------CccHhhhccc
Q 026940 85 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNIQ 138 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~tL~~~~i~ 138 (230)
++..+++.+-..+||.++|++|-+.. +.| ++.+.|-|. | . .|.| -.||+.|+++
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888999999999999997653 333 345666652 2 2 2443 1489999999
Q ss_pred cCCceEEEEE
Q 026940 139 KESTLHLVLR 148 (230)
Q Consensus 139 ~~~~i~l~~~ 148 (230)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999977644
No 251
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.85 E-value=0.25 Score=33.79 Aligned_cols=64 Identities=31% Similarity=0.480 Sum_probs=45.2
Q ss_pred CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCC--C-----------CcccccCCCC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--G-----------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d--~-----------~tL~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-+.. |.| ++.+.|.| .| + .|.| . .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457777888999999999985533 343 34566765 23 2 3433 1 4899999999
Q ss_pred CCEEEEEEEe
Q 026940 216 ESTLHLVLRL 225 (230)
Q Consensus 216 ~~~i~l~~~~ 225 (230)
|+++.++.|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998764
No 252
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.70 E-value=0.35 Score=29.80 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=45.0
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.|+|++....+ ...++++...|+.+|.+.+ ++++....+..||.....+. -+++|+.|.+...
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 47777764432 2456777788999998875 56677666778988886554 6788999877644
No 253
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.68 E-value=0.27 Score=31.84 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=44.5
Q ss_pred cCceeEEEeecc-ccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+. ++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-+++||.|.++--..||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4554 445666 8999998876 4667777777899887642 4556679999999998877766
No 254
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.66 E-value=0.27 Score=33.63 Aligned_cols=63 Identities=32% Similarity=0.480 Sum_probs=44.4
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-Cc----ccCC-------------CccHhhhcccc
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-GK----QLED-------------GRTLADYNIQK 139 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g~----~L~d-------------~~tL~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++...|-|. |. .|.| -.||+.|++++
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457888899999999999997643 443 334556652 21 1332 14899999999
Q ss_pred CCceEEEEE
Q 026940 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|+++.+..+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988754
No 255
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.64 E-value=0.14 Score=32.77 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=38.3
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g 199 (230)
+.|.|+.. -++.+.+++..+..+|+++|+++.+++++..+|.|..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 44555533 6888999999999999999999999999999999866
No 256
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.17 E-value=0.22 Score=31.93 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.||..=..++.|+++++.+..+|.++|.++.++|++.-.|.|..
T Consensus 7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 33333337999999999999999999999999999888888854
No 257
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=92.45 E-value=0.31 Score=29.40 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=43.3
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.+|+.+. + ...||.+|.+.+ +.++....+..||.....+ .-.+.-+++||.|.++--..||
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 3566554 4 568999998877 4556667777899877532 3455678999999988877766
No 258
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=92.34 E-value=0.25 Score=30.78 Aligned_cols=62 Identities=5% Similarity=0.098 Sum_probs=45.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.|+| +|+.+.+ +..||.+|-+ ..|+++..--+.+||..+.. ....+.-+.+|+.+.++-..
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccc
Confidence 55555 7776554 6789999987 66888887777789987643 35667778899998887543
No 259
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.33 E-value=0.86 Score=29.96 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=46.9
Q ss_pred CceeeEEEecc------C-eeEeeecCCCChHHHHHHHHHhHhC-C----------CCCCcEEEecCcccCCCccHhhhc
Q 026940 75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 75 ~~~~v~v~~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
+.|.|+|+... | ....+++....||.+|.+.+..... + ......+..||+.... +..
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46777777642 3 4567788888999999999987642 1 1234556678877653 566
Q ss_pred cccCCceEEEEE
Q 026940 137 IQKESTLHLVLR 148 (230)
Q Consensus 137 i~~~~~i~l~~~ 148 (230)
+++|+.|.+...
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 889999877643
No 260
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.25 E-value=0.55 Score=29.15 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=44.9
Q ss_pred CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.|.|+....-. -.+++ ...||.+|.+.+....++.. ..-.+..||+.+.+ .+.-+++|+.+.++...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 788888875321 34667 67899999999987544332 23345567776443 24457888888877543
No 261
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.10 E-value=0.57 Score=30.13 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=44.7
Q ss_pred ceeEEEeeccccHHHHHHHhccccC-CC----------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~-~~----------~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
....++++...||.+|.+.+...+. +. .....+.-||+.... ++-+++||.|.++--..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567778778899999999988763 10 012566678877654 4568999999998877776
No 262
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.83 E-value=0.56 Score=30.30 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+|+.+ ++..+ .||.+|.+.+ ++++..-.+..||..+.. ....+.-+.+|+.|.++..
T Consensus 26 NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEE
T ss_pred CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcc
Confidence 66644 45666 8999999865 677766666788877643 3455667899999888753
No 263
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.77 E-value=2.1 Score=29.53 Aligned_cols=61 Identities=34% Similarity=0.541 Sum_probs=41.6
Q ss_pred ceeEEEeeccccHHHHHHHhccc----cCCC----CCceEEEE-cC---eecC----------CC----CcccccCCCCC
Q 026940 163 KTITLEVESSDTIDNVKAKIQDK----EGIP----PDQQRLIF-AG---KQLE----------DG----RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~----~~~~----~~~q~L~~-~g---~~L~----------d~----~tL~~~~i~~~ 216 (230)
+.+++.+-..+||.++|++|-+. .|.| ++.+.|.| .| ..|. +. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45777787899999999998442 2554 44566665 22 2222 11 37889999999
Q ss_pred CEEEEEE
Q 026940 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~l~~ 223 (230)
+++-++.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998765
No 264
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=91.75 E-value=0.49 Score=29.89 Aligned_cols=65 Identities=14% Similarity=0.259 Sum_probs=45.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceEEEeccccccCCccccccccccccceeeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~ 73 (230)
|.|+| +|+.+.+....+.||.+|-+ ..|++ +..--+.+||..+.. ....++-+.+|+.|.++-..
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLS----ALKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHH----HHTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHH----HcCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeee
Confidence 66665 77755432216789999988 55788 776677789987744 45667778999998887543
No 265
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=91.50 E-value=0.3 Score=30.47 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=46.3
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
+|+.+.+ ...||.+|-+. .++++....+..||..+.. ....+.-+++||.|.++.-..||.
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 4665544 56899998764 4677888888899988764 356677899999999988888874
No 266
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.42 E-value=1 Score=35.90 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=54.0
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEE---cC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~---~g--~~L~d~~tL~~~~i~~~~~i~l~~~~ 225 (230)
+.+.|...+| ++.+.+++++|+.++-+.|+++.|+... .+-|.+ +| .-|+.++++.+.+++.+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 5677788887 6789999999999999999999998544 345554 33 24677888988877766666565553
No 267
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=91.38 E-value=0.26 Score=31.53 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=29.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.|.+ ..++..|.+.|+++.+..+|+++|..+..+.
T Consensus 14 KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 14 KIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred EEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3444 3367899999999999999999999999994
No 268
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.32 E-value=0.33 Score=29.48 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=43.9
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
+|+.+ +++...||.+|.+.+ +.++....+..||...... ...+.-+++||.|.++--..||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 45543 456778999998877 4566777777899877532 3445578999999888777666
No 269
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=90.81 E-value=0.56 Score=29.48 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=41.6
Q ss_pred eeEEEeeccccHHHHHHHhccccC-----CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~-----~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...++ ....||.+|.+.+...+. ++.....+..||+.... +.-+++||.|.++-...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34454 456799999999886642 22334566688877642 4568999999988777776
No 270
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.54 E-value=1.3 Score=35.69 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=56.0
Q ss_pred ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEE
Q 026940 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~--~g~--~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
...+.+.|...+| ++.+.+++++|+.++-+.|+.+.|+.. +.+-|.+ +|. -|+.++++.+.+++.+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3456778888888 788999999999999999999999854 3445554 442 367788999988776665555555
Q ss_pred e
Q 026940 225 L 225 (230)
Q Consensus 225 ~ 225 (230)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 271
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.51 E-value=1.3 Score=28.76 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.2
Q ss_pred EEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEecc
Q 026940 4 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 47 (230)
Q Consensus 4 ~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~g 47 (230)
.||. .+|..+.+.++++.+..+|.+++.+..++++.+ -.+.|..
T Consensus 8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3443 368999999999999999999999999998755 3555643
No 272
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.95 E-value=1.3 Score=28.66 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=38.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEEecCcc
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~ 125 (230)
|+|++. .+|....+.++++.+..+|.+++.+.++++... ..+.|....
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 555553 567788999999999999999999999987544 677787654
No 273
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.83 E-value=0.19 Score=35.18 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=29.1
Q ss_pred eEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
..+.|..++|+.+|+..|++.+|+|+++|||-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 35788899999999999999999999999875
No 274
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=89.80 E-value=2.3 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.6
Q ss_pred EEEeeccccHHHHHHHhccccCC------C-------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~------~-------~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.++. ...||.+|.+.+..++.- . .....+.-||.......- .+.-+++||+|.++--..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4553 457999999999887631 1 113556678876653222 24568999999998888877
No 275
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=89.74 E-value=0.44 Score=29.72 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=42.0
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCCce--EEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
...++++...||.+|.+.+...+. ..... .+..||+....+ .-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 445666677899999999877642 01223 666888877643 568999999888777666
No 276
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=89.70 E-value=0.75 Score=27.80 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
|.|+| +|+.+ ++....||.+|.+.+ ++++..-.+..||..+.. ....+.-+++|+.+.++..
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEES
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEee
Confidence 45554 67754 556788999999865 567766666678876643 2344556788888887643
No 277
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.66 E-value=1.5 Score=38.57 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=55.9
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..+.+.|...+| ++.+.+++++|+.+|-..|+...|+.. +.+-|.+. | .-|+.++++.+.+++.+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 346778888887 678999999999999999999999854 34556542 2 3567788898888777776666655
Q ss_pred e
Q 026940 225 L 225 (230)
Q Consensus 225 ~ 225 (230)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 278
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=89.23 E-value=0.41 Score=30.26 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=47.0
Q ss_pred cCceeEEEeeccccHHHHHHHhccccCCC-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 161 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
+|+.+.+......||.+|-+.+ +++ +....+..||..+..+ ...++-+++||.|.++.-..||+
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 4664443211668999997755 566 7777788999888643 56777899999999988888885
No 279
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.01 E-value=1.8 Score=29.80 Aligned_cols=60 Identities=35% Similarity=0.496 Sum_probs=41.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh----CCCCC----ceEEEec-c---ccc----------cC----Cccccccccccc
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKE----GIPPD----QQRLIFA-G---KQL----------ED----GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~----gi~~~----~q~l~~~-g---~~l----------~d----~~tl~~~~i~~~ 64 (230)
..+++.+-.-+||.++|++|-+.. |.|-+ ...|-|. | ..| .+ -.||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468899999999999999986653 66653 3334441 1 111 22 257889999999
Q ss_pred cceeee
Q 026940 65 STLHLV 70 (230)
Q Consensus 65 ~~i~l~ 70 (230)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 988765
No 280
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=87.63 E-value=2.2 Score=27.56 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=43.7
Q ss_pred CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCceEEEeccccccCCcccccccc
Q 026940 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------~-------~~~q~l~~~g~~l~d~~tl~~~~i 61 (230)
|.|.|+... |....++. +..||++|.+.+..++.- . ...-.+..||+......- .+.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 677777664 43334664 568999999999887520 0 012355677766553221 24568
Q ss_pred ccccceeeeeee
Q 026940 62 QKESTLHLVLRL 73 (230)
Q Consensus 62 ~~~~~i~l~~~~ 73 (230)
.+|+.|.++...
T Consensus 79 ~~gDeV~i~Ppv 90 (93)
T 3dwg_C 79 ADGDSVTILPAV 90 (93)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEECCC
Confidence 889988877544
No 281
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=87.45 E-value=2.9 Score=36.80 Aligned_cols=63 Identities=32% Similarity=0.533 Sum_probs=44.5
Q ss_pred ceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-c---Ce-ecCCC-------------CcccccCCCCC
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d~-------------~tL~~~~i~~~ 216 (230)
+.+++.|-..+||.++|++|-+.. |.| ++.+.|.| . |+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457788888999999999986432 333 35566765 2 23 35431 48999999999
Q ss_pred CEEEEEEEe
Q 026940 217 STLHLVLRL 225 (230)
Q Consensus 217 ~~i~l~~~~ 225 (230)
+++-++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887664
No 282
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=87.33 E-value=0.19 Score=31.61 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=39.9
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.++++...||.+|.+.+. +++....+..||+....+ .-+++||.|.++--..||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 345566789999988764 566666777899887654 568899999877666665
No 283
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=87.02 E-value=2.3 Score=35.08 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~ 48 (230)
.-....+.+++..|+.+++++++..++++++.|.+.+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~ 359 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 359 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC
Confidence 3456788999999999999999999999999999999873
No 284
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=86.91 E-value=4.9 Score=27.22 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=39.5
Q ss_pred eeEEEeec---cccHHHHHHHhccccC-CC---------CC-ceEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEecC
Q 026940 164 TITLEVES---SDTIDNVKAKIQDKEG-IP---------PD-QQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 164 ~~~i~v~~---~~tV~~lK~~i~~~~~-~~---------~~-~q~L~~~g~~L~d~~tL--~~~~i~~~~~i~l~~~~~g 227 (230)
.+.++++. ..||.+|-..+.+++. .. .. ...++.||. |-.-| .++-+++||.|.++--..|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~---di~~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA---DWELLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS---BHHHHCTTTCBCCSSEEEEEEECSCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe---eeeccCCcCcCCCCCCEEEEeCCCCC
Confidence 55677773 3699999999998871 11 11 122223332 11122 3567999999999888888
Q ss_pred CC
Q 026940 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|+
T Consensus 108 G~ 109 (114)
T 1wgk_A 108 GS 109 (114)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 285
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=85.26 E-value=2.3 Score=27.16 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=41.3
Q ss_pred EEEeeccccHHHHHHHhccccC------C-----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~------~-----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
.++++...||.+|.+.+...+. + ......+..||...... .-.+.-+++||+|.++--..||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 3455566899999999887752 1 11345666888766421 1234568999999888777666
No 286
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.23 E-value=2.9 Score=26.65 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.4
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-C-----CC-----CCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i-----~~-----~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
....++++...||.+|.+.+..+.. + .. ....+..||+.... +.-+++|+.|.+.....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 4567888888999999999988763 1 10 12566678877654 45688899998775443
No 287
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.38 E-value=4.7 Score=31.91 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=48.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec---cc--cccCCccccccccccccceee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g~--~l~d~~tl~~~~i~~~~~i~l 69 (230)
|.+.|..++| ++.+.+++..|+.++=+.|.++.|+.... --|.+. |. -|+.++.+.+.++..+....+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 4677888887 78899999999999999999999998643 244442 32 266677787776554444333
No 288
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=84.21 E-value=1.1 Score=40.25 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-cccccCCcccccc
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g~~l~d~~tl~~~ 59 (230)
.++...+.+.+++|+.+++..|++.+|||++.|.+++. |-.+++......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 35667789999999999999999999999999999975 5556666565554
No 289
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.05 E-value=5.2 Score=35.18 Aligned_cols=64 Identities=28% Similarity=0.474 Sum_probs=44.8
Q ss_pred CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-c---Ce-ecCC-------------CCcccccCCCC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLED-------------GRTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d-------------~~tL~~~~i~~ 215 (230)
.+.+++.|-..+||.++|++|-+.. |.| ++.+.|.| . |+ .|.| =.||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3567788888999999999985532 333 45566765 2 22 3433 14899999999
Q ss_pred CCEEEEEEEe
Q 026940 216 ESTLHLVLRL 225 (230)
Q Consensus 216 ~~~i~l~~~~ 225 (230)
|+++-++.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998775
No 290
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=83.51 E-value=3.1 Score=33.22 Aligned_cols=74 Identities=8% Similarity=-0.000 Sum_probs=53.1
Q ss_pred cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026940 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
..+.+.|...+|....+.+++.+|+.+|-..|+++.|+... .+-|.+. | .-|+..+++.+........+++..+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 44778888999999999999999999999999999997543 3555542 3 3467777887765444455655544
No 291
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=82.56 E-value=7.7 Score=25.27 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=39.1
Q ss_pred ceeEEEee--ccccHHHHHHHhccccCCC-CCc------------eEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEe
Q 026940 163 KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------------QRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL 225 (230)
Q Consensus 163 ~~~~i~v~--~~~tV~~lK~~i~~~~~~~-~~~------------q~L~~~g~~L~d~~tL--~~~~i~~~~~i~l~~~~ 225 (230)
+...++++ ...||.+|.+.+.+++.-. .+- ..+.-||...+ .+ .++-+++||+|.++--.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence 34556666 5689999999998876311 111 11224443211 11 35578999999888777
Q ss_pred cCC
Q 026940 226 RGG 228 (230)
Q Consensus 226 ~gg 228 (230)
.||
T Consensus 97 ~GG 99 (99)
T 2qjl_A 97 HGG 99 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 776
No 292
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.51 E-value=5.5 Score=26.49 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=49.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---ecCcc--cCCCccHhhhccccCCceEEEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+...|...+....++.+..+.|+.+++..+.++.+...+.+.|. ++|.. |+++..--.-.+.-++.+++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33444456777788899999999999999999999876677776 56643 45544433334555667766554
No 293
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=82.35 E-value=2.3 Score=26.52 Aligned_cols=56 Identities=4% Similarity=0.084 Sum_probs=37.9
Q ss_pred eEeeecCCCChHHHHHHHHHhHhC-----CCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
...++ ....||.+|.+.+..... ++.....+..||+.... +..+++|+.|.+....
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence 45566 567899999999876532 23344566688876643 4567899998776443
No 294
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=82.13 E-value=2.2 Score=26.33 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCc--EEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
....+++....||.+|.+.+..... ..... .+..||+....+ ..+++|+.|.+...
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence 3456777788899999999887642 11223 566888877543 56888998877643
No 295
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=81.79 E-value=5.3 Score=25.44 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=35.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecC
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g 123 (230)
..|+|.+. .++..+.+.++.+.+..+|+.+|..+..+. ...++ |++
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF 57 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence 45677774 456789999999999999999999999983 44444 443
No 296
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=81.21 E-value=8.1 Score=24.41 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=47.8
Q ss_pred eEEEeeccccHHHHHHHhcccc-C--C---CCCceEEEEcC--eecCCCCcccccCCCCCCEEEEEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--~---~~~~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.-+.|+..+|+.++-++++-.. | + |-...+..++| ..+..+.|+++-||.+-+.|.+.+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4467888999999988887654 4 3 22246777888 8999999999999999999988753
No 297
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=79.98 E-value=10 Score=24.83 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=56.3
Q ss_pred EEEEEccCC---cEEEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEecc---ccccCCccccccccccccceeeeee
Q 026940 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g---~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+|+|...+. ...+++|.-+.-|+-+-.++-+...++. +.--|.+-. -.+....||..||+..++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 688888664 5689999999999999999998888776 444566543 3477889999999999999887643
No 298
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.35 E-value=9.5 Score=25.34 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=48.3
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE---EcCe--ecCCCCcccccCCCCCCEEEEEEE
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~--~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|...+....++.++.+.|+.+++..+.++.+...+.+.|. ++|. .|+++..--.-.+.-+..|++-.|
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3334455667888889999999999999999877678776 6774 445554444445667777777655
No 299
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=79.04 E-value=9.5 Score=30.45 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=48.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec--c--ccccCCccccccccccccce
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA--G--KQLEDGRTLADYNIQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~--g--~~l~d~~tl~~~~i~~~~~i 67 (230)
.+.|..++| ++.+.+++..|+.++=+.|.++.|+.... --|.+. | .-|+.++.+.+.+...+...
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 467888888 78899999999999999999999998632 244442 3 22677778888765544443
No 300
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=78.86 E-value=2.4 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=26.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
+..+.+.|+++.+..+|..+|.++++++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5689999999999999999999999876
No 301
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=78.38 E-value=1.9 Score=26.83 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=36.2
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.+++.+..||.+|.+.+ ++++..-.+..||+.+..+ .-+.+|+.|.++..
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence 44667788999998855 5676666677888877654 55788888877643
No 302
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.19 E-value=3.7 Score=24.44 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=39.7
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.+|+.+. + +..||.+|.+.+ ++++..-.+..||..+.. ....+.-+++|+.+.++..
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEEC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEee
Confidence 3677665 4 678999999865 566665666678876643 3445566888998887653
No 303
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.69 E-value=5.1 Score=26.46 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=44.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcE-EE-ec-----CcccCCCccHhhh
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~-~~-----g~~L~d~~tL~~~ 135 (230)
...-|.|...+|....+.|++.+|++++-+.+..+.+.....-. |+ +. -+.++|...+-+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 34567777899999999999999999999999999986544332 22 21 2456776655544
No 304
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=77.49 E-value=3.5 Score=27.16 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=41.7
Q ss_pred ceeEEEeeccccHHHHHHHhccccCCC---CC--------ceEEEEcC-eecC------CCCcccccCCCCCCEEEEE
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEGIP---PD--------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~---~~--------~q~L~~~g-~~L~------d~~tL~~~~i~~~~~i~l~ 222 (230)
....++++++.|..+|-+.+++.-... |+ .-.|+..+ ..|+ -+++|.+.|+.+|+.|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 356789999999999999998853321 11 34455443 2232 2578999999999998774
No 305
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=76.92 E-value=4.4 Score=27.91 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=34.5
Q ss_pred cccHHHHHHHhccccCCCCCceEEEE--cCeec-----CC--CCcccccCCCCCCEEEEE
Q 026940 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tV~~lK~~i~~~~~~~~~~q~L~~--~g~~L-----~d--~~tL~~~~i~~~~~i~l~ 222 (230)
.+|..+|-..+..++|... .+-+.- +.+.| +| .++|.+.|+++|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4699998777888888753 333331 22333 22 579999999999998765
No 306
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=76.89 E-value=7.9 Score=23.31 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=38.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
|.++|...+|+. .++..+.|+.++-..+....+ ...--..++|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 788898878876 567788999999887754332 1112234677655443 344456665554
No 307
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.64 E-value=7.1 Score=34.33 Aligned_cols=65 Identities=29% Similarity=0.486 Sum_probs=44.9
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-C---c-ccCC-------------CccHhhhcccc
Q 026940 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNIQK 139 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~tL~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++...|-|. | + .|.| -.||+.|++++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568889999999999999997653 333 345556552 2 1 2332 14899999999
Q ss_pred CCceEEEEEee
Q 026940 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.+..+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99998876654
No 308
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.59 E-value=5.8 Score=26.18 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=43.7
Q ss_pred ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEE--Ec----CeecCCCCccccc
Q 026940 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA----GKQLEDGRTLADY 211 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~--~~----g~~L~d~~tL~~~ 211 (230)
...|.+...+|....+.|++++|+.++-+.+..+.+...+ ...|+ +. -+.++|+..+-+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 3456777788999999999999999999999999986543 33343 22 1567777655443
No 309
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=76.14 E-value=12 Score=23.61 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=47.4
Q ss_pred eEEEeeccccHHHHHHHhcccc-C--CC--CCceEEEEcCee--cCCCCcccccCCCCCCEEEEEE
Q 026940 165 ITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~i~v~~~~tV~~lK~~i~~~~-~--~~--~~~q~L~~~g~~--L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
.-+.|+..+|+.++-+++.... | ++ |.-.+..++|.. +..+.|+++-||++-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4577889999999988887654 4 22 235677789977 8999999999999999998875
No 310
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=76.06 E-value=4.7 Score=26.52 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC-----------ceEEEecc-ccccC------Cccccccccccccceeee
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----------~q~l~~~g-~~l~d------~~tl~~~~i~~~~~i~l~ 70 (230)
...+++++++|+.+|-+.+...-.+.-. ...|++.+ ..|+. +++|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4578999999999999999885332221 45556554 22322 567999999999998875
No 311
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=76.04 E-value=7.5 Score=23.42 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|.+.+..++|+. .+++...|+.++-+.+....+ ....-...+|+..+-+ +-+++|+.|.++..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 456666667765 566778999999887754432 2223334688766543 45567888877653
No 312
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=75.92 E-value=2.4 Score=28.55 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=38.5
Q ss_pred CceeEEEeec----cccHHHHHHHhccccCCCCCceEEE-EcC--e------ecCCCCc---c--cccCCCCCCEEEEEE
Q 026940 162 GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L--ADYNIQKESTLHLVL 223 (230)
Q Consensus 162 ~~~~~i~v~~----~~tV~~lK~~i~~~~~~~~~~q~L~-~~g--~------~L~d~~t---L--~~~~i~~~~~i~l~~ 223 (230)
|+...++++. ..||.+|-..+.+++.- .+-.+. -+| . +|=++.. + .+|-+++||.|.++-
T Consensus 20 g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 20 AKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp TSCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CCeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 3455677773 35999999999887621 111111 112 0 2212222 2 347799999998887
Q ss_pred EecCC
Q 026940 224 RLRGG 228 (230)
Q Consensus 224 ~~~gg 228 (230)
-+-||
T Consensus 98 tlhg~ 102 (110)
T 2k9x_A 98 TLHGG 102 (110)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 77777
No 313
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=75.09 E-value=7.3 Score=34.33 Aligned_cols=63 Identities=32% Similarity=0.505 Sum_probs=44.3
Q ss_pred eeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-C---c-ccCC-------------CccHhhhccccC
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~tL~~~~i~~~ 140 (230)
..+++.|-..+||.++|++|-+.. |.| ++...|-|. | + .|.| -.||+.|++++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 458888999999999999997543 443 344556652 2 2 2433 148999999999
Q ss_pred CceEEEEEe
Q 026940 141 STLHLVLRL 149 (230)
Q Consensus 141 ~~i~l~~~~ 149 (230)
+++.+..+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876554
No 314
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.79 E-value=14 Score=32.37 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=48.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEec---c--ccccCCccccccccccccceee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~~---g--~~l~d~~tl~~~~i~~~~~i~l 69 (230)
.+.|..++| ++.+.+++..|+.+|=..|....|+... .--|++. | .-|+.++.+.+.++..+..+.+
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 577888887 7889999999999999999999999763 2355542 2 2366677777776655544433
No 315
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=74.63 E-value=12 Score=23.45 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=51.0
Q ss_pred EEEeeccccHHHHHHHhccccCCCCCceEEEE-cCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.+.|++......+-+-.++++.+|+....++. .|.=....++-...-++.|+.+.+.-|-|=|+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 46788888777777788889999998887774 55556778888888889999999999877553
No 316
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=74.24 E-value=5.3 Score=31.83 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=45.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec---c--ccccCCcccccc
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADY 59 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g--~~l~d~~tl~~~ 59 (230)
|.+.|..++|....+.+++..|+.||=+.|.++.|+.... --|.+. | .-|+.++.+.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 4678999999999999999999999999999999998633 345543 2 225566666655
No 317
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=72.09 E-value=6.3 Score=25.89 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=34.4
Q ss_pred ceeeEEEecc-------CeeEeeecCCCChHHHHHHHHHhHhCCCCC-----CcEEEecC
Q 026940 76 GMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAG 123 (230)
Q Consensus 76 ~~~v~v~~~~-------g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-----~q~L~~~g 123 (230)
.+.|.+...+ +..+.+-|+++.+..+|..+|.++.+++.. ..++.|..
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3556665332 456899999999999999999999986522 24566654
No 318
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.67 E-value=18 Score=23.47 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=25.3
Q ss_pred CEEEEEccC------C--cEEEEEec--CCCcHHHHHHHhhhhhC
Q 026940 1 MQIFVKTLT------G--KTITLEVE--SSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 1 m~v~v~~~~------g--~~~~~~v~--~~~tv~~lK~~i~~~~g 35 (230)
|.|.|+... | +...+++. +..||++|.+.+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 466666553 2 45667776 67899999999988763
No 319
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=70.30 E-value=18 Score=29.57 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=41.6
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc--cCCCccHhhhc
Q 026940 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYN 136 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~--L~d~~tL~~~~ 136 (230)
..-....+.+.+..|+.++++++++.++++++.|.|++.+.. ++...+...|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 345567788899999999999999999999999999988733 34444455544
No 320
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=69.64 E-value=5.1 Score=36.02 Aligned_cols=52 Identities=31% Similarity=0.602 Sum_probs=42.4
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEec-CcccCCCccHhhh
Q 026940 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~tL~~~ 135 (230)
...+.+.+.+.++.|+.+++..|.+.+|++++.|.+++. |..+++......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 445667788999999999999999999999999999965 4556666666665
No 321
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=69.57 E-value=18 Score=25.04 Aligned_cols=75 Identities=9% Similarity=0.215 Sum_probs=48.9
Q ss_pred cCceeeEEEeccCee-------EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecCccc-CCCccHhhhcc---ccCC
Q 026940 74 RGGMQIFVKTLTGKT-------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKES 141 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~-------~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~tL~~~~i---~~~~ 141 (230)
++.+.|.|+-..+.. -.+-|+.+.||+++..-|..+..++++.--++ |.+..+ ..+.++++.-- .+++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG 112 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG 112 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence 345666665443322 24568889999999999999999998876655 655544 44666766531 2345
Q ss_pred ceEEEEE
Q 026940 142 TLHLVLR 148 (230)
Q Consensus 142 ~i~l~~~ 148 (230)
.+++...
T Consensus 113 fLyv~Ys 119 (130)
T 2zjd_A 113 FLYMVYA 119 (130)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 6666544
No 322
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=69.55 E-value=12 Score=25.56 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC------CcEEE---ecCcc--cCCCccHhhhccccCCceE
Q 026940 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLH 144 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~------~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~ 144 (230)
.+...|...+.....+.+..+.|+.+++..+.++.+..-+ .+.|. ++|.. |+++..--.-.+.-++.++
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLf 88 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLF 88 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEE
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEE
Confidence 3444455566677788899999999999999999987543 56665 56643 4444333333344556666
Q ss_pred EEE
Q 026940 145 LVL 147 (230)
Q Consensus 145 l~~ 147 (230)
+..
T Consensus 89 vc~ 91 (120)
T 2dhz_A 89 ACT 91 (120)
T ss_dssp EEC
T ss_pred Eee
Confidence 554
No 323
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=69.39 E-value=7.2 Score=25.35 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEeccc
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~g~ 48 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..- .+...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 36899999999999999999999999999765 4445554
No 324
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=67.37 E-value=7.4 Score=24.83 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
.+.+.+.|++.+|=.++|+.|+..+|+.+..-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~V 53 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQV 53 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEE
Confidence 46899999999999999999999999998644
No 325
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=66.53 E-value=18 Score=24.13 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=44.4
Q ss_pred CceeeEEEeccCee------EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhcc---ccCCceE
Q 026940 75 GGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~~------~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~ 144 (230)
+.+.|.|+...+.. -.+-|+.+.||+++..-|..+.+++++.--.+| ++.....+.++++.-- ..++.++
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLy 105 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLY 105 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEE
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEE
Confidence 44555555443221 234677788999999999999999887654444 5544455666766531 2344555
Q ss_pred EE
Q 026940 145 LV 146 (230)
Q Consensus 145 l~ 146 (230)
+.
T Consensus 106 i~ 107 (110)
T 2r2q_A 106 VA 107 (110)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 326
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=66.32 E-value=24 Score=22.87 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=40.7
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCCC---------ce-------EEEeccccccCCccc
Q 026940 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTL 56 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~---------~q-------~l~~~g~~l~d~~tl 56 (230)
|.|.|+... | +.+ +++ ..||.+|.+.+...+. +... .- .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 677777765 3 234 444 6899999999887742 1110 11 456777655322 12
Q ss_pred cccccccccceeeeee
Q 026940 57 ADYNIQKESTLHLVLR 72 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~ 72 (230)
.++-+.+|+.|.++..
T Consensus 80 ~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 80 LETLLKDSDEIGILPP 95 (99)
T ss_dssp TTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCEEEEECC
Confidence 3445788888777643
No 327
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=65.85 E-value=25 Score=22.93 Aligned_cols=56 Identities=5% Similarity=0.063 Sum_probs=39.3
Q ss_pred ceeEEEeeccccHHHHHHHhcc--cc-CCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940 163 KTITLEVESSDTIDNVKAKIQD--KE-GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~--~~-~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 223 (230)
..+.+++++.+||.++-+...- .. .+..+...+..+|+... .++-+++||.|.++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 3567788899999999776543 22 34555667777887776 445588999998753
No 328
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=65.00 E-value=20 Score=24.70 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHhHhCCCC-------CCcEEEecCcccCC--CccHhhhccccCCceEEEE
Q 026940 96 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~i~~-------~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~ 147 (230)
..|..+|-..+..++|.+. ..++|+|.-- .+| .++|++.|+++|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEc
Confidence 3588888888888888652 2355555432 223 6799999999999887764
No 329
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=64.59 E-value=8.4 Score=27.97 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred EEEeeccccHHHHHHHhccccC-CC---------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940 166 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 166 ~i~v~~~~tV~~lK~~i~~~~~-~~---------~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~ 229 (230)
.++++. .||.+|.+.+...+. +. .....+..||...... .-.++-+++||.|.++--..||+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~-~~~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc-CCCccCCCCCCEEEEECcccccc
Confidence 445555 899999999877652 10 2335566788776542 22345699999999988888875
No 330
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=62.87 E-value=14 Score=23.94 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.1
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEE-EEcCee
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 201 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L-~~~g~~ 201 (230)
...+.+.|++.+|=.++|+.++..+++.+....- ...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 3689999999999999999999999999988754 466653
No 331
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=62.66 E-value=25 Score=21.95 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=36.9
Q ss_pred EEEecCCCcHHHHHHHhhhhhC------C-----CCCceEEEeccccccCCccccccccccccceeeeee
Q 026940 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g------i-----~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.++++...||.+|.+.+..... + ....-.+..||+..... .-.+..+++|+.|.++..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 3466667899999999887742 1 11233566788766432 223445888888877643
No 332
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=62.46 E-value=13 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=38.1
Q ss_pred EEeeccccHHHHHHHhccccC-CCC---------Cce-------EEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 167 LEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 i~v~~~~tV~~lK~~i~~~~~-~~~---------~~q-------~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
++++ ..||.+|.+.+..++. ... ... .+..||...... .-.++-+++||+|.++--..||
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TSTTSCCCTTEEEEEECCCSCC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCCCCCCCCCCEEEEECCCCCC
Confidence 3444 6899999999877752 111 123 556777655321 1234468999999888777776
No 333
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=61.73 E-value=10 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=32.6
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEeccc
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~g~ 48 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..- .+...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 37899999999999999999999999998655 3445554
No 334
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=61.20 E-value=28 Score=21.95 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=45.8
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CC--CCCcEEEecCcc--cCCCccHhhhccccCCceEEE
Q 026940 89 ITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--i~--~~~q~L~~~g~~--L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.-+.++..+|+.++=++++... | ++ |...+..++|.. +.++.++++.|+.+-+.|.+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 3467889999999999987653 3 22 335677789987 899999999999998888765
No 335
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=61.11 E-value=34 Score=22.92 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=41.3
Q ss_pred CEEEEEccC------C--cEEEEEecC---CCcHHHHHHHhhhhhCCCCCceEEEec-ccc------ccCCcc---c--c
Q 026940 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ------LEDGRT---L--A 57 (230)
Q Consensus 1 m~v~v~~~~------g--~~~~~~v~~---~~tv~~lK~~i~~~~gi~~~~q~l~~~-g~~------l~d~~t---l--~ 57 (230)
|.|.|+... | +.+.++++. ..||.+|-+.+.+.+ |..+.+|+.. |.. +-++.. | -
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 567777665 3 366788883 369999999998876 2222233322 211 111111 1 2
Q ss_pred ccccccccceeeeeeec
Q 026940 58 DYNIQKESTLHLVLRLR 74 (230)
Q Consensus 58 ~~~i~~~~~i~l~~~~~ 74 (230)
++.+++|+.|.+.....
T Consensus 90 dt~L~dGDeV~iip~va 106 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLH 106 (114)
T ss_dssp TCBCCSSEEEEEEECSC
T ss_pred CcCCCCCCEEEEeCCCC
Confidence 35688888877765443
No 336
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.11 E-value=12 Score=23.91 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 468999999999999999999999999986543
No 337
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=60.34 E-value=30 Score=22.02 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=39.9
Q ss_pred EEEEeccCce-eEEEeec-cccHHHHHHHhccccCCCCCceEEE-EcC---eecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940 155 IFVKTLTGKT-ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~~-~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~L~-~~g---~~L~d~~tL~~~~i~~~~~i~l~~~~~gg 228 (230)
|+-+....+. ..+.++. ..+|.+||..|..+.+.-....-|. ++. .+..|+.. -|..++.|.+.-...+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~----lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNA----LIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTC----EEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCce----EEecCCEEEEEeccCcc
Confidence 4555555443 4577774 5699999999998887644445444 432 34444332 25556666443333333
No 338
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=60.31 E-value=11 Score=24.59 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=30.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceE-EEecc
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g 47 (230)
.+.+.|++.+|=.++|+.|+..+|+.+..-. +...|
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 3899999999999999999999999997654 33444
No 339
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=59.09 E-value=39 Score=22.88 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=46.3
Q ss_pred eeEEEeeccccHHHHHHHhc-cccC-------CCCCceEEEEcCeec--CCCCcccccCCCCCCEEEEEEE
Q 026940 164 TITLEVESSDTIDNVKAKIQ-DKEG-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~-~~~~-------~~~~~q~L~~~g~~L--~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
.+.+-++++++.++|-+.+- .-++ +.-+.-.+..+|+.. +.+++|.+-|+.--|.|++...
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TP 109 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTP 109 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECT
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCC
Confidence 46788999999999976653 3344 344455688899877 5689999999999999987644
No 340
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=58.30 E-value=15 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=42.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--------CCCCCcEEEe-c--C--cccCC-CccHhhhccc
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--G--KQLED-GRTLADYNIQ 138 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~-~--g--~~L~d-~~tL~~~~i~ 138 (230)
..+.|.+=.++|-.+.++++.+.|+.++|+.+.++.. -.++...+.. + + .++.| ++.|.+...-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 3455555578898889999999999999999988743 2344444442 2 2 23544 4677776543
No 341
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=58.18 E-value=1.9 Score=28.49 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEee
Q 026940 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 91 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i 91 (230)
+-..+++.+....|++.|.+..|++++ .+.++..| .++|+.+=..+.+.......+.|.+...
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~------- 81 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDE------- 81 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHH-------
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHH-------
Confidence 445667788899999999999999874 56777788 8999887777777666544444433211
Q ss_pred ecCCCChHHHHHHHHHhH
Q 026940 92 EVESSDTIDNVKAKIQDK 109 (230)
Q Consensus 92 ~v~~~~tV~~lK~~i~~~ 109 (230)
++....||+++-..|.++
T Consensus 82 ~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 82 EAEKINTVGDAVKFINSL 99 (101)
T ss_dssp HHTTCCBHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHc
Confidence 134566899988877654
No 342
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=57.44 E-value=12 Score=23.19 Aligned_cols=79 Identities=11% Similarity=0.011 Sum_probs=53.4
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..+...+++.+.+..|+++.. .-..+.++..+.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~-----~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~-------~~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGT-----DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDD-------VAGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCC-----CTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTT-------TTTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCccc-----ccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHH-------HHHcCCCH
Confidence 567889999999999998741 001355666788999987777777766655444444211 13455689
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..+.++.
T Consensus 72 ~~l~~~i~~~~ 82 (86)
T 1af8_A 72 RELLDLINGAL 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988877653
No 343
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=57.33 E-value=41 Score=22.66 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=46.1
Q ss_pred CceeeEEEeccCe------eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhcc---ccCCceE
Q 026940 75 GGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~------~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~ 144 (230)
+.+.|.|+...+. .-.+-|+.+.||+++..-|..+..++++.--.+| ++.....+.++++.-- ..++.++
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLy 106 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLY 106 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEE
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEE
Confidence 4455555544332 1234577788999999999999999887654444 5544455666766532 2345666
Q ss_pred EEEE
Q 026940 145 LVLR 148 (230)
Q Consensus 145 l~~~ 148 (230)
+...
T Consensus 107 i~Ys 110 (117)
T 1eo6_A 107 VAYS 110 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6544
No 344
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=56.91 E-value=11 Score=23.49 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
..+.+.|+++.+..+|..+|..+++..
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 467899999999999999999999874
No 345
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=56.75 E-value=36 Score=29.50 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEecCc----ccCCCccHhh
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGK----QLEDGRTLAD 134 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g~----~L~d~~tL~~ 134 (230)
..+.+.|...+|....+.++..+|+.++-..|+++.|+.. +..-|+.... .|.++..+.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 4578888889999999999999999999999999999974 3455654321 2455544443
No 346
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=55.88 E-value=9.7 Score=25.36 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=52.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEecc---ccccCCccccccccccccceeeeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g---~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
+|+|...+ ...+++|.-+.-|+-+-.++-+...++. ++--|.+-. -.+....||..||+..++.+++...
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35554443 7788899988999999999998887776 334555533 3477889999999999999887654
No 347
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=55.24 E-value=27 Score=23.28 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.7
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhC
Q 026940 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
.+=..+|-...++++.++|+.++|+.+.+..+
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~ 54 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKEAR 54 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHGG
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHHHH
Confidence 33455899999999999999999998887754
No 348
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=54.82 E-value=35 Score=23.09 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=47.0
Q ss_pred eeEeeecCCCChHHHHHHHHHhH--------hCCCCCCcEEEecCcccC--CCccHhhhccccCCceEEE
Q 026940 87 KTITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~--------~~i~~~~q~L~~~g~~L~--d~~tL~~~~i~~~~~i~l~ 146 (230)
..+++-+++..+.++|-+.+-.- ..|..+.-.+..+|+... .+++|++.|+.-.+.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 35788999999999998776542 236677778999998874 5789999999988877654
No 349
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=54.30 E-value=31 Score=26.83 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=36.5
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE---cC----eecCCCCcccc
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AG----KQLEDGRTLAD 210 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g----~~L~d~~tL~~ 210 (230)
-|.|...+|....+.|++++|+.+|-..+..+..++.+.-..++ .. +.|+|...+-+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 45666778889999999999999999998888776443333222 21 56666655443
No 350
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.35 E-value=30 Score=23.54 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=43.2
Q ss_pred EEeccCceeEEEeeccccHHHHHHHhccccCCCCC------ceEEE---EcCe--ecCCCCcccccCCCCCCEEEEEEE
Q 026940 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~------~q~L~---~~g~--~L~d~~tL~~~~i~~~~~i~l~~~ 224 (230)
|...+....++.++.+.|+.+++..+.++.+...+ .+.|. ++|. .|+++..--.-.+.-+..|++-.|
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33344556678888999999999999999986443 66665 5673 445443332334455556655433
No 351
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=53.12 E-value=21 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=32.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|..+.++++++-.++ .++.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 358899999999999999999999765544 46654444555544
No 352
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=52.82 E-value=19 Score=23.29 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.6
Q ss_pred ceeEEEeeccccHHHHHHHhccccCCCCCceEE-EEcCe
Q 026940 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 200 (230)
Q Consensus 163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L-~~~g~ 200 (230)
..+.+.|++.+|=.++|+.++..+++.+....- ...|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 688999999999999999999999998887754 36654
No 353
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=52.62 E-value=51 Score=22.29 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=39.8
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhcc---ccCCceEEEEE
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVLR 148 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~l~~~ 148 (230)
.+-|+.+.||+++...|..+..++++.--.+| ++.....+.++++.-- ..++.+++...
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 45588899999999999999999887655444 5544455666666432 23445655543
No 354
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.84 E-value=23 Score=24.28 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.3
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|.++..++|++-.++| ++.....+.++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 4688999999999999999999997765555 5433334455544
No 355
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=51.68 E-value=53 Score=22.23 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=46.8
Q ss_pred cCceeeEEEeccCee------EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecCcccCCCccHhhhcc---ccCCce
Q 026940 74 RGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~------~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i---~~~~~i 143 (230)
++.+.|.|.-..+.. -.+-|+.+.||+++...|..+..++++.--++ .++.....+.++++.-- ..++.+
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL 108 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL 108 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence 344555555433321 23468889999999999999999988764444 56664455667666532 234455
Q ss_pred EEEE
Q 026940 144 HLVL 147 (230)
Q Consensus 144 ~l~~ 147 (230)
++..
T Consensus 109 yv~Y 112 (119)
T 3h9d_A 109 YMKY 112 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 356
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=51.41 E-value=47 Score=21.56 Aligned_cols=56 Identities=5% Similarity=0.066 Sum_probs=38.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh---CCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~---gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~ 71 (230)
..+.+++.++.||.++=+...-.. .|......+-.+|+... .++-+.+|+++.++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 467788999999999988654321 23333456778888776 444577888888753
No 357
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=51.38 E-value=27 Score=30.34 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC--ceEEEe
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 45 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~--~q~l~~ 45 (230)
.+.|..++|....+.+++..|+.+|-+.|..+.|+... .--|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 46788889999999999999999999999999999852 334544
No 358
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.36 E-value=56 Score=22.37 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=40.0
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhcc---ccCCceEEEEE
Q 026940 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVLR 148 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~l~~~ 148 (230)
.+-|+.+.||+++...|..+..++++.--++| ++.....+.++++.-- .+++.+++...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 34688899999999999999999888755444 5544455667766542 13445555443
No 359
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=50.85 E-value=61 Score=22.72 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEec---------------------ccc-ccCCcccccccccccccee
Q 026940 12 TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---------------------GKQ-LEDGRTLADYNIQKESTLH 68 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~---------------------g~~-l~d~~tl~~~~i~~~~~i~ 68 (230)
.+.|-...++|+.||-..|.+..--.+ ..=+|.|. |+. -+|++||++.+..-|+-|.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 356667889999999999887642111 11123222 211 2567999999999999988
Q ss_pred eeeeecC
Q 026940 69 LVLRLRG 75 (230)
Q Consensus 69 l~~~~~~ 75 (230)
+.+.++.
T Consensus 135 vaI~pP~ 141 (143)
T 4a6q_A 135 IAITPPN 141 (143)
T ss_dssp EEEECGG
T ss_pred EEEeCCC
Confidence 8887654
No 360
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=49.70 E-value=45 Score=22.18 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=45.8
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEecC---cccCCCccHhhhccccCCceEEE
Q 026940 87 KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
...++.|..+.-|+.+-.++-+...++- +.--|-+.. ..+.-..||..||++.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 5677888888899999999998877653 344455433 35678899999999999988664
No 361
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=49.34 E-value=17 Score=23.62 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=31.7
Q ss_pred eeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcCe
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~ 200 (230)
.+.+.|++.+|=.++|+.|+..+++.+....-. ..|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 489999999999999999999999998887654 5553
No 362
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=48.83 E-value=64 Score=25.04 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=38.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEec-------CcccCCCccHhhh
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-------g~~L~d~~tL~~~ 135 (230)
..|.|...+|....+.|+++.|+++|-..+..+..+....-..++. -+.|+|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 4566767889999999999999999999988877754433332221 2567777666554
No 363
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=48.07 E-value=49 Score=20.81 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=45.6
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CC--CC-CcEEEecC--cccCCCccHhhhccccCCceEEEE
Q 026940 89 ITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--i~--~~-~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.-+.|+..+|+.++=++++... | ++ |. ..+..++| +.+..+.|+++.||.+-..|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3567899999999999987653 3 32 22 45667888 889999999999999988876653
No 364
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=47.94 E-value=29 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|.++.++++++-.++| ++.....+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 4589999999999999999999987655554 5433333445443
No 365
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=47.36 E-value=22 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.1
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCC-----CCCcEEEecC
Q 026940 88 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g 123 (230)
.+.+.|+++.+..+|..+|.++.+.. ....++.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46788999999999999999999975 3456666755
No 366
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=46.86 E-value=16 Score=23.24 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.7
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
..++.+.|++.+|=.++|+.+++.+++.+....-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 46799999999999999999999999988776544
No 367
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=45.64 E-value=43 Score=21.47 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=32.3
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccc-cCCcccc
Q 026940 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLA 57 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l-~d~~tl~ 57 (230)
..-|+.+.|++++...|.++.++++++-.++| ++..+ ..+.+++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~ 68 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVG 68 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHH
Confidence 45688999999999999999999997665555 54333 3344444
No 368
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=45.62 E-value=42 Score=26.49 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe---c----CcccCCCccHhhh
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---A----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~----g~~L~d~~tL~~~ 135 (230)
+.+.|...+|....+.|++++|+++|-+.+..+.+.+...-.-++ . -+.|+|...+.+.
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 456666788999999999999999999998888876544333222 1 1557777766654
No 369
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=45.19 E-value=38 Score=23.38 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=33.1
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEE-ecccccc-CCccccc
Q 026940 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLE-DGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~-d~~tl~~ 58 (230)
..-|+.+.||+++...|.++.++++++-.++ |.+..+. .+.++++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 3468899999999999999999999876655 5544343 3445544
No 370
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=43.77 E-value=66 Score=21.02 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=52.0
Q ss_pred eeeEEEeccC---eeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEecC---cccCCCccHhhhccccCCceEEEE
Q 026940 77 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g---~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.|+|...+. ...++.|..+.-|+.+-.++-++..++. +.--|-+.. ..+.-..||..||++.++.+++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 4556655443 5578888888899999999998877653 344555533 356788999999999999887653
No 371
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=42.74 E-value=31 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|....+++.+++|+.+.=.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 578888899999999999999988655
No 372
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=41.84 E-value=39 Score=30.15 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=37.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 45 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~ 45 (230)
|.+.|..++|....+.+++..|+.++-+.|..+.|+... .-.|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 357788899999999999999999999999999998763 234444
No 373
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.72 E-value=29 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=28.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
+.+.+.|++.+|=.++|+.|+..+|+.+..-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kV 124 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKV 124 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEE
Confidence 6899999999999999999999999998655
No 374
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=41.69 E-value=37 Score=30.35 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEe
Q 026940 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~ 121 (230)
..+.+.|...+|....+.++..+|+.++-..|+.+.|+.. ...-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4678889999999999999999999999999999999754 3455554
No 375
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.21 E-value=25 Score=22.35 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.7
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
..++.+.|++.++=.++|+.++..+++.+....-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 46789999999999999999999999988776544
No 376
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=40.04 E-value=57 Score=25.73 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=39.1
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCc-eEEE--EcC----eecCCCCcccc
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAG----KQLEDGRTLAD 210 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~L~--~~g----~~L~d~~tL~~ 210 (230)
.+.|...+|....+.|++++|+.+|-+.+..+.+.+... -.|+ +.. +.|.|...+.+
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 455666778899999999999999998888888764333 3333 222 45666555444
No 377
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=39.51 E-value=5.6 Score=26.12 Aligned_cols=75 Identities=11% Similarity=0.206 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
.+....+++.|.+..++++. .+.++..|.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 16 ~~i~~~l~~ila~~l~v~~~---------~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~-------~l~~~~TV 79 (100)
T 1vku_A 16 KKLIAKFVEIASEKMGKDLE---------TVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDE-------EISKIRKV 79 (100)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---------SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHH-------HHTTCCBH
T ss_pred HHHHHHHHHHHHHHHCCCHH---------HCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHH-------HHHcCCCH
Confidence 34667899999999998874 467777889999877777776665544444433211 23456799
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
++|-..|..+.
T Consensus 80 ~~L~~~I~~~~ 90 (100)
T 1vku_A 80 KDLIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887764
No 378
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=39.45 E-value=64 Score=20.62 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=38.4
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCccc-CCCccHhhhcc--ccCCceEEE
Q 026940 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L-~d~~tL~~~~i--~~~~~i~l~ 146 (230)
-.+-|+.+.||+++..-|..+..+++++--.+| ++.-+ ..+.++++.-- +.++.+++.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~ 83 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLH 83 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEE
Confidence 356788899999999999999999887655544 55433 44556555421 244455444
No 379
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.22 E-value=34 Score=24.03 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=28.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
+.+.+.|++.++=.++|+.|+..+++.+..-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kV 110 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKV 110 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEE
Confidence 6899999999999999999999999998654
No 380
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=39.14 E-value=32 Score=24.82 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +.||+.+.++++++.|+.++-+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (166)
T 1n62_A 5 HIEL-TINGHPVEALVEPRTLLIHFIREQ 32 (166)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHc
Confidence 4555 348999999999999999876653
No 381
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=39.07 E-value=66 Score=24.83 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q 117 (230)
+.|.|...+|....+.|++..|..++-+.+..+.+++....
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 45666677888899999999999999999999999876543
No 382
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=45.16 E-value=6.4 Score=25.95 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=48.5
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....|++.|.+..+++++ .+.++..|.++|+.+=..+.+.......+.+.+... ++....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 456788888888887763 356677788899887777777766655555444211 1234568888
Q ss_pred HHHHHHhHh
Q 026940 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
|-..|..+.
T Consensus 91 l~~~I~~~~ 99 (103)
T 2lte_A 91 LFQLVEKHR 99 (103)
Confidence 877776553
No 383
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=38.75 E-value=37 Score=24.06 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
.+.+.+.|++.++=.++|+.|+..+++.+..-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kV 118 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSV 118 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEE
Confidence 46899999999999999999999999998654
No 384
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=38.46 E-value=75 Score=24.47 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
|.|-..+|....+.|++..|..++-+.+..+.+++....
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 444456788999999999999999999999999876443
No 385
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=38.06 E-value=80 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=31.9
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 4678889999999999999999997655554 5543334445544
No 386
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.99 E-value=76 Score=20.11 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.1
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.+.+..++++.-.++|.+..|+.+--.+..++.++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3455578888899999999999999999999999988766655
No 387
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=37.20 E-value=74 Score=19.73 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
+.+..++++.-.+++.+..|+.+--.+.-++.++.|+....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 455678899899999999999999999999999988765555
No 388
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=37.07 E-value=6.1 Score=24.26 Aligned_cols=74 Identities=14% Similarity=0.320 Sum_probs=47.8
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
++....+++.+.+..|+++. .+.++..| .++|+.+=..+.+.........+.+... .+....|
T Consensus 6 ~~i~~~l~~~i~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~-------~~~~~~T 69 (82)
T 2cnr_A 6 EEIVAGLAEIVNEIAGIPVE---------DVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDD-------DVKNLKT 69 (82)
T ss_dssp HHHHHHHHHHHHHHSCCCTT---------TCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGG-------GGGTCSB
T ss_pred HHHHHHHHHHHHHHhCCCHH---------HCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHH-------HHHHcCC
Confidence 34556788888888888763 45666677 6898876666666655544333333211 2345668
Q ss_pred HHHHHHHHHhH
Q 026940 99 IDNVKAKIQDK 109 (230)
Q Consensus 99 V~~lK~~i~~~ 109 (230)
|+++-..|.++
T Consensus 70 v~~l~~~i~~~ 80 (82)
T 2cnr_A 70 VGDATKYILDH 80 (82)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 389
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=36.88 E-value=80 Score=20.03 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred EeeecCC-CChHHHHHHHHHhHhCCCCCCcEEE-ecC
Q 026940 89 ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 89 ~~i~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~-~~g 123 (230)
-.+.++. ..+|.+||..|..+.+......-|. ++.
T Consensus 20 ~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na 56 (86)
T 2c7h_A 20 DTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNA 56 (86)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEES
T ss_pred ceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence 3455554 4499999999999888765556555 443
No 390
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.47 E-value=71 Score=20.52 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=32.9
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCccccccccccccceeeeee
Q 026940 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.+..+|+.+....++++...-+|.+ +|-.++|+.=+... +..++.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 4899999999999999865566665 58888765333332 2345555544
No 391
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=36.33 E-value=86 Score=20.45 Aligned_cols=86 Identities=6% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026940 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+.+.+.. +..+. ..|+ ..+-.-+.|+...|++..- ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~----~~g~-------~~~~~~v~i~~~~g~~~eq---k~~l 76 (115)
T 1uiz_A 16 PDTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIMS----FGDS-------TDPCAVCSLCSIGKIGGPQ---NKSY 76 (115)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE----ETTB-------CSSCEEEEEEESSCCSHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChhHEEEEEEC-----CcceE----ECCC-------CCCeEEEEEEEecCCCHHH---HHHH
Confidence 34457788888999999999988776632 11111 1111 1222334444444332100 0123
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecC
Q 026940 99 IDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
...+-+.+++..|+|+++..+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 77 TKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 5666677788899999998877643
No 392
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=36.28 E-value=38 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=22.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +.||+.+.++++++.|+.++-+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (163)
T 1ffv_A 5 IITV-NVNGKAQEKAVEPRTLLIHFLREE 32 (163)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 3445 358999999999999999876653
No 393
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=36.03 E-value=64 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccc
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~ 58 (230)
.-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 4578889999999999999999997665555 4543334445544
No 394
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=36.01 E-value=47 Score=20.11 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.8
Q ss_pred ccHhhhccccCCceEEEEEeecceeEEEEe
Q 026940 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.+.+.-+.+.+ .+.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 56889999999999888766555 555553
No 395
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.69 E-value=92 Score=20.37 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=33.4
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
|.||.. .|.++.+.++..-+..+|..++...+|-+. -|.|.
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~ 50 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYT 50 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEEC
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEe
Confidence 444444 588999999999999999999999999865 45664
No 396
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.46 E-value=85 Score=19.90 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=37.0
Q ss_pred eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
.+.+..++++...++|.+..|+.+--.+.-++-++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4677778889999999999999999888888889988877766
No 397
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.31 E-value=61 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=21.0
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhh
Q 026940 7 TLTGKTITLEVESSDTIDNVKAKIQ 31 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~ 31 (230)
+.||+.+.++++++.|+.++=....
T Consensus 8 ~vNG~~~~v~~~~~~tLL~~Lr~~~ 32 (161)
T 1rm6_C 8 TLNGRAREDLVPDNMLLLDYLRETV 32 (161)
T ss_dssp EETTEEEEEEEETTCBHHHHHHHTT
T ss_pred EECCEEEEEecCCcCcHHHHHHHcC
Confidence 3489999999999999998877653
No 398
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=33.91 E-value=87 Score=19.56 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=50.3
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe-cCcccCCCccHhhhccccCCceEEEEEee
Q 026940 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
..+.|++.+....+-+-.++++.+|+...-++. .|.-++..++-...=++.|+.+.+..|.+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 356788888888888888999999998877775 55667888888888899999998876644
No 399
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=33.60 E-value=46 Score=23.90 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=21.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026940 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|.|.+ ..+|+.+.++++++.|+.++=..
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHh
Confidence 34555 34799999999999999987664
No 400
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=33.37 E-value=95 Score=20.22 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHH
Q 026940 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~l 102 (230)
+.++-+.+.+.+|.|++.+.+.+. ++..+. ..|+. .+-..+.|+...|++..- ...-+..+
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~----~~g~~-------~~~~~v~i~~~~g~t~eq---k~~l~~~i 80 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT----FSGNT-------EPTCYVEVKSIGALDGSR---TQEVSELV 80 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC----BTTBC-------SSCEEEEEEESSCCCTTH---HHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE----ECCCC-------CcEEEEEEEEecCCCHHH---HHHHHHHH
Confidence 555666677789999998776653 111111 11111 222334444333332100 01246677
Q ss_pred HHHHHhHhCCCCCCcEEEecC
Q 026940 103 KAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 103 K~~i~~~~~i~~~~q~L~~~g 123 (230)
-+.+++..|+|+++..+.+..
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 81 CGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHhCcCcccEEEEEEE
Confidence 778888899999998877644
No 401
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=32.42 E-value=1e+02 Score=20.10 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=31.8
Q ss_pred CcHHHHHHHhhhhhCCCCCc--eEEE--eccccccCCccccccccccccceeeeee
Q 026940 21 DTIDNVKAKIQDKEGIPPDQ--QRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~--q~l~--~~g~~l~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
.+..+|+.+....++++... -+|. .+|..++|+.=+... +..+..+++.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEc
Confidence 48999999999999997642 3554 368888765433332 2345455443
No 402
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=32.36 E-value=53 Score=21.34 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|..+.+++.+++|+.+.=.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVV 34 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHH
Confidence 466766689999999999999987654
No 403
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=32.17 E-value=1e+02 Score=20.29 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026940 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+.+.+.. +..+. +| |+. .+-.-+.|+...|++..- ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~---g~~-------~~~~~i~I~~~~g~~~eq---k~~l 76 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRIT-HG---ASR-------NPVAVIKVESIGALSADD---NIRH 76 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCCC-BT---TBC-------SSCEEEEEEESSCCCHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccEE-Ec---CCC-------CCeEEEEEEEecCCCHHH---HHHH
Confidence 45567788888999999999988877642 11111 11 211 122234444444432100 0123
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940 99 IDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
...+-+.+++..|+|+++..+.+...
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (119)
T 2os5_A 77 TQKITQFCQDTLKLPKDKVIITYFDL 102 (119)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 56666677888999999988876443
No 404
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=32.07 E-value=38 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026940 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
+.+.+.|+..+|=.++|+.|+..+++.+..-.
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 121 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVN 121 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEE
Confidence 68999999999999999999999999986543
No 405
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=31.81 E-value=93 Score=28.29 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=39.2
Q ss_pred eeEEEeeccccHHHHHHHhccccC--CCCCc--------eEEEEcCe--e----c--CCCCcccccCCCCCCEEEEE
Q 026940 164 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~i~v~~~~tV~~lK~~i~~~~~--~~~~~--------q~L~~~g~--~----L--~d~~tL~~~~i~~~~~i~l~ 222 (230)
...+.++.+.|+.++-+.++.+.. +.... ..++|... . . .-+++|.+.|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456778888899999888888644 32211 23444321 1 1 12578999999999998764
No 406
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=31.45 E-value=42 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|.+ ..||+.+.++++++.|+.++-+
T Consensus 5 ~i~~-~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINL-NLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEE-EETTEEEEEEECSSSBHHHHHH
T ss_pred eEEE-EECCEEEEEecCCCCCHHHHHH
Confidence 4555 4579999999999999998755
No 407
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=31.15 E-value=1.1e+02 Score=19.80 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=37.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.+..++++.-.++|.+..|+.+--.+..+..++.++....+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 35667788999999999999999999999999999988766555
No 408
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=30.24 E-value=8.6 Score=24.90 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=53.3
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeec
Q 026940 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v 93 (230)
.....++....|++.|.+..|++++ .+.++..| .++|+.+=..+.+.......+.+.+... ++
T Consensus 16 ~~~t~~~i~~~l~~iia~~l~~~~~---------~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~-------~l 79 (97)
T 3ejb_A 16 RGSHMSTIEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDE-------EA 79 (97)
T ss_dssp --CCCCCHHHHHHHHHHHHSCCCTT---------TSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHH-------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCHH---------HCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHH-------HH
Confidence 3455567888999999999999874 56677778 6999987777777766654444433211 12
Q ss_pred CCCChHHHHHHHHHhH
Q 026940 94 ESSDTIDNVKAKIQDK 109 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~ 109 (230)
....||++|-..|.++
T Consensus 80 ~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 80 EKITTVQAAIDYINGH 95 (97)
T ss_dssp HHCCBHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHh
Confidence 3456899888877654
No 409
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.62 E-value=25 Score=25.92 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=28.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026940 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
.+.+.+.|++.+|=.++|+.|+..+|+.+..-
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kV 162 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKV 162 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEE
Confidence 46899999999999999999999999998544
No 410
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=28.75 E-value=67 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|..+.+++.+++|+.+.=.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 33 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQ 33 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHH
Confidence 466656689999999999999988654
No 411
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=28.69 E-value=36 Score=20.62 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=47.8
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....+++.+.+..|+++. ..+.++..|.++|+.+=..+.+.......+.+.+.. -.+....||++
T Consensus 5 i~~~l~~i~~~~l~~~~~--------~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~-------~~~~~~~Tv~~ 69 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGAD--------VVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDE-------DKAQDISTIQQ 69 (82)
T ss_dssp HHHHHHHHHHHHTTCSSS--------SCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCG-------GGSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcc--------cccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCH-------HHHHhCCCHHH
Confidence 456788888999998763 246677778889987766666665554333333311 12345568999
Q ss_pred HHHHHHhHh
Q 026940 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
+-..|....
T Consensus 70 l~~~i~~~~ 78 (82)
T 2ava_A 70 AADVIEGLL 78 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876653
No 412
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=27.10 E-value=8.6 Score=23.67 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=48.9
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~ 100 (230)
....+++.+.+..|++++ .+.++.+| .++|+.+=..+.+.......+.+.+... .+....||+
T Consensus 6 i~~~l~~ii~~~l~~~~~---------~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~-------~~~~~~Tv~ 69 (81)
T 3gzm_A 6 TFDDIKKIISKQLSVEED---------KIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQ-------DALKINTVQ 69 (81)
T ss_dssp HHHHHHHHHHHHHTCCGG---------GCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHH-------HHHTCCBHH
T ss_pred HHHHHHHHHHHHhCcCHH---------HCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHH-------HHHHcCCHH
Confidence 456788888889998863 56777788 6999877777766665544333333211 134556899
Q ss_pred HHHHHHHhHh
Q 026940 101 NVKAKIQDKE 110 (230)
Q Consensus 101 ~lK~~i~~~~ 110 (230)
++-..|.++.
T Consensus 70 ~l~~~i~~~~ 79 (81)
T 3gzm_A 70 DAIDYIEKNN 79 (81)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9988887664
No 413
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=26.87 E-value=1.3e+02 Score=22.52 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=42.4
Q ss_pred hccccCCceEEEEEeecceeEEEEeccCceeEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCe
Q 026940 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~ 200 (230)
.++..+..+++++.-.+.....|+....+...+. .++..+..-+|+++....+...+.-+-...|.
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pGi 116 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPGL 116 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETTE
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCCE
Confidence 4577788888888776666777776565666677 67778888889999886554444444445553
No 414
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=26.67 E-value=15 Score=23.33 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccc-cccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~-~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
.|...|++.+.+.+++++. .+.++.++.+ +|+.+=..+.+.......+.|.+.. -++....||
T Consensus 2 ~tle~l~~I~~e~l~~d~~---------~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~-------~~l~~~~TV 65 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDDDSI---------VLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFAL-------GELQKLKNV 65 (87)
T ss_dssp CSHHHHHHHHHHHHTCSSC---------CCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCH-------HHHTTCCSH
T ss_pred chHHHHHHHHHHHhCCCcc---------ccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecH-------HHHHcCCCH
Confidence 4788999999999999874 4666666665 5666555555554443333322211 123455689
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
++|-..|.++.
T Consensus 66 ~dl~~~I~~kl 76 (87)
T 2kjs_A 66 GDLADLVDKKL 76 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887664
No 415
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=26.49 E-value=96 Score=19.80 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|....+++.+++|+.+.=.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 466765778889999999999988755
No 416
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=26.02 E-value=11 Score=23.26 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=47.6
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..++++. .+.++..| .++|+.+=..+.+.......+.+.+.. . .+....||
T Consensus 9 ~i~~~l~~~i~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~--~-----~~~~~~Tv 72 (84)
T 2kwl_A 9 EIFSKVRSIISEQLDKKED---------EITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPE--N-----EANEFETV 72 (84)
T ss_dssp HHHHHHHHHHHHHHCCCGG---------GCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTT--T-----GGGGCSSH
T ss_pred HHHHHHHHHHHHHhCCCcc---------cCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCH--H-----HHHHCCCH
Confidence 3456778888888888763 56777788 899987776666665554333332211 0 12345689
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 73 ~~l~~~i~~~~ 83 (84)
T 2kwl_A 73 GDVVNFIKKRK 83 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99988887654
No 417
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=25.89 E-value=1e+02 Score=18.77 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred ccHhhhccccCCceEEEEEeecceeEEEE
Q 026940 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+=.+.++
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~ 54 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQIN 54 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999887665433233444
No 418
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=25.87 E-value=69 Score=25.49 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=32.1
Q ss_pred CceeeEEEeccCeeEeeecCC--CChHHHHHHHHHhHhCCCCC---CcEEEe
Q 026940 75 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~i~~~---~q~L~~ 121 (230)
+.+++.|...+|....++++. .+|+.++- +..|++.. ..-|+.
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~ 51 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWI 51 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEE
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEE
Confidence 456788889999999999999 99999993 44677643 244554
No 419
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=25.82 E-value=80 Score=20.12 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=31.7
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026940 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+|+|..... .++.+++...+-+..|=+++....++.+
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 688887754 7889999999999999999988888776
No 420
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.81 E-value=1.8e+02 Score=27.80 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=43.0
Q ss_pred eeEEEEeccCceeEEEeeccccHHHHHHHhcccc------C--CCCCceEEEE-c--C--eec-CCCCcccccCC
Q 026940 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE------G--IPPDQQRLIF-A--G--KQL-EDGRTLADYNI 213 (230)
Q Consensus 153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~------~--~~~~~q~L~~-~--g--~~L-~d~~tL~~~~i 213 (230)
+.|..-.++|-.++++++.++|++++|+.+.++- + ..++.+.+.+ + | .++ ++++.|.+...
T Consensus 52 v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~ 126 (1092)
T 2y3a_A 52 ISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP 126 (1092)
T ss_dssp EEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred eEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence 4445556778889999999999999999987762 1 2466777764 3 2 245 55678888653
No 421
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=25.70 E-value=81 Score=25.06 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=29.2
Q ss_pred CEEEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCC
Q 026940 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~~ 39 (230)
++|.|-.++|....++++. .+|+.++-+ ..|++..
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~ 42 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQE 42 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCcc
Confidence 4688889999999999999 899999943 4788763
No 422
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=25.45 E-value=97 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAAR 28 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 577766788889999999999987654
No 423
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.23 E-value=1.5e+02 Score=19.41 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=35.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc
Q 026940 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++|++. ..|.+..+.++..-+..+|.+++...+|- ...|.|-+.+
T Consensus 9 vRiKfE-~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFE-HRGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYTNNE 53 (103)
T ss_dssp EEEEEE-ETTEEEEEEEESSCCHHHHHHHHHHHHSS---CEEEEECSSS
T ss_pred EEEEEE-ecCeEEEEeccCCccHHHHHHHHHHHhCC---eeeEEEecce
Confidence 455553 57888999999999999999999999996 3556665443
No 424
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=24.66 E-value=93 Score=20.01 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=22.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 467766788889999999999988655
No 425
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=23.99 E-value=2.9e+02 Score=22.38 Aligned_cols=177 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCC-CC
Q 026940 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 97 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~-~~ 97 (230)
.+-|+.++++.|.++.. ..-.+..+.+.+.-.....|+|...=.+.-.+.+.. ..
T Consensus 117 aG~T~~e~~~~I~~~L~------------------------~~~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT------------------------TYIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT------------------------TTSSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH------------------------HhccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Q ss_pred hHHHHHHHHHhHhC-CCCCCcEEEecCc--------ccCCCccHhhhccccCCceEEEEEeecceeEEEEeccCceeEEE
Q 026940 98 TIDNVKAKIQDKEG-IPPDQQRLIFAGK--------QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 168 (230)
Q Consensus 98 tV~~lK~~i~~~~~-i~~~~q~L~~~g~--------~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~ 168 (230)
||.+.-.+--.... -......|..+|+ .+.+...-.++-+++|++| .+.......+.+...-++.-.++
T Consensus 173 tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I--~Vp~~~~~~v~V~GeV~~pg~~~ 250 (359)
T 2j58_A 173 TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDIL--FIPSNDDLKVFVMGEVGKQSTLK 250 (359)
T ss_dssp BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEE--EECBGGGCEEEEEESBSSCEEEE
T ss_pred cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeE--EEeeceeeeEEeeccccCcceEe
Q ss_pred ee-ccccHHHHHHHhccccC-CCCCceEEEEcCe------------ecCCCCccc-----ccCCCCCCEEEE
Q 026940 169 VE-SSDTIDNVKAKIQDKEG-IPPDQQRLIFAGK------------QLEDGRTLA-----DYNIQKESTLHL 221 (230)
Q Consensus 169 v~-~~~tV~~lK~~i~~~~~-~~~~~q~L~~~g~------------~L~d~~tL~-----~~~i~~~~~i~l 221 (230)
++ ...|+.++-...--... ..-....+.++.. .++-..... ++-+++||.|++
T Consensus 251 l~~~~~tl~eal~~AGGi~~~~A~~~~I~v~R~~~~~~~~~~~~v~~ldl~~~~~~~~~~~f~Lq~gDvVyV 322 (359)
T 2j58_A 251 MDRSGMTLAEALGNAEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLNAQDASAMVLGTEFQLQPYDIVYV 322 (359)
T ss_dssp CBTTBCBHHHHHHHTTCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEECCSBGGGHHHHTTCBCCTTEEEEE
T ss_pred ecCCCCCHHHHHHhCCCCCcccCCcceEEEEEecCCCCCccceEEEEecccCcccccccCCCccCCCCEEEE
No 426
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.98 E-value=1e+02 Score=20.68 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.0
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCC
Q 026940 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+||.+...+|..+ +|.+...+....+-++.-+++++..
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~ 69 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEE 69 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTT
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCC
Confidence 3677766677765 6889999988888888888999885
No 427
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=23.94 E-value=9.7 Score=23.50 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEecccccc--CCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCC
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~--d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~ 97 (230)
..+...+++.+.+..|+++. ..++ ++..+.++|+.+=..+.+.......+.+.+... .+....
T Consensus 3 ~~~~~~l~~~l~~~l~~~~~--------~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~-------~~~~~~ 67 (83)
T 1or5_A 3 ALTVDDLKKLLAETAGEDDS--------VDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDE-------TVGRLG 67 (83)
T ss_dssp CSCHHHHHHHHHHHSCCCSS--------CCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHH-------HHHHCC
T ss_pred hHHHHHHHHHHHHHhCCCcc--------cccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHH-------HHhccC
Confidence 35778899999999999874 1344 566689999876666666655544433333110 123445
Q ss_pred hHHHHHHHHHhH
Q 026940 98 TIDNVKAKIQDK 109 (230)
Q Consensus 98 tV~~lK~~i~~~ 109 (230)
||+++-..|.++
T Consensus 68 Tv~~l~~~i~~~ 79 (83)
T 1or5_A 68 TPRELLDEVNTT 79 (83)
T ss_dssp CSHHHHHHHTTC
T ss_pred CHHHHHHHHHHH
Confidence 888888777654
No 428
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=23.76 E-value=62 Score=26.49 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=38.9
Q ss_pred EEeccCe----eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEec----Cc--ccCCCccHhhh
Q 026940 81 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA----GK--QLEDGRTLADY 135 (230)
Q Consensus 81 v~~~~g~----~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~----g~--~L~d~~tL~~~ 135 (230)
|...+|+ ...+.++..+|+.++-..++++.|+... ..-|.+. |. -|+.+.++.+-
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4455666 8899999999999999999999998432 2345542 11 36666676543
No 429
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=23.45 E-value=1.1e+02 Score=20.70 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=24.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.|++...+|....+++.+++|+.+.=. ..|++
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~----~~gi~ 54 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAI----RNAIP 54 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHH----TTTCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH----HcCCC
Confidence 577776789889999999999988544 44555
No 430
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=23.27 E-value=1.2e+02 Score=18.84 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred ccHhhhccccCCceEEEEEeecceeEEEE
Q 026940 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+.+.+=.+.++
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p~~gpi~v~ 57 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAPMGDPIALR 57 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCSEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999887665433234444
No 431
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=23.01 E-value=1.9e+02 Score=19.99 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=45.2
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCc-e--EEE---eccccc-cCCccccccccccccceeeeee
Q 026940 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQ-Q--RLI---FAGKQL-EDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~-q--~l~---~~g~~l-~d~~tl~~~~i~~~~~i~l~~~ 72 (230)
++|.+...+|..+ ++-+...+....+-++.-+++++..+. . .|+ -.|++| -++..--.|.+.......++++
T Consensus 28 IRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR 107 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLK 107 (140)
T ss_dssp EEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEE
T ss_pred EEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEe
Confidence 3677877778776 588999998888888888899988764 1 222 134443 2333333444444444444444
Q ss_pred e
Q 026940 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
.
T Consensus 108 ~ 108 (140)
T 3kh0_A 108 K 108 (140)
T ss_dssp E
T ss_pred e
Confidence 3
No 432
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=22.89 E-value=12 Score=23.03 Aligned_cols=72 Identities=14% Similarity=0.286 Sum_probs=47.7
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~ 100 (230)
....+++.+.+..|+++. .+.++..| .++|+.+=..+.+.......+.+.+... .+....||+
T Consensus 8 i~~~l~~ii~~~l~~~~~---------~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~-------~~~~~~Tv~ 71 (82)
T 2qnw_A 8 LLERVKDVVADQLGVDRA---------RINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDE-------EASKIATVQ 71 (82)
T ss_dssp HHHHHHHHHHHHHCCCGG---------GCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHH-------HHTTCCBHH
T ss_pred HHHHHHHHHHHHHCCCHh---------hCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHH-------HHHHcCCHH
Confidence 456788889999998763 46777788 7999877666666655543333332110 134566899
Q ss_pred HHHHHHHhH
Q 026940 101 NVKAKIQDK 109 (230)
Q Consensus 101 ~lK~~i~~~ 109 (230)
++-..+.++
T Consensus 72 ~l~~~i~~~ 80 (82)
T 2qnw_A 72 DALSYIEKA 80 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887765
No 433
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=22.54 E-value=48 Score=20.16 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHhhhhhCCCCCceEEEeccccccCCccccccc-cccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026940 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~-i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
-..+++.+.+..|.++. .+.++..|.+.| +.+=..+.+.......+.|.+... .+....-.||++
T Consensus 6 ~~~i~~il~~~~~~~~~---------~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~-----~~~~~~~~Tv~~ 71 (80)
T 1dv5_A 6 KNGVLDILADLTGSDDV---------KKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS-----EFDRKEWDTPNK 71 (80)
T ss_dssp HHHHHHHHHHHHTSSST---------TTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCS-----SCCTTTTTSHHH
T ss_pred HHHHHHHHHHHhCCCcc---------cCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHH-----HcCHHhcCCHHH
Confidence 45688888888887653 356677777777 666666666666554444444210 111224458998
Q ss_pred HHHHHHhH
Q 026940 102 VKAKIQDK 109 (230)
Q Consensus 102 lK~~i~~~ 109 (230)
+-..|.++
T Consensus 72 l~~~i~~~ 79 (80)
T 1dv5_A 72 IIAKVEQA 79 (80)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 88877653
No 434
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=22.29 E-value=18 Score=21.76 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=46.2
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 100 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~ 100 (230)
....+++.+.+..|++++ .+.++..+ .++|+.+=..+.+.........+.+.. -.+....||+
T Consensus 4 i~~~l~~~~~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~-------~~l~~~~Tv~ 67 (78)
T 1l0i_A 4 IEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPD-------EEAEKMTTVQ 67 (78)
T ss_dssp HHHHHHHHHHHHHTCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCH-------HHHTTCCBHH
T ss_pred HHHHHHHHHHHHhCCCHH---------HCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCH-------HHHHHcCCHH
Confidence 456788888989988763 45666677 688887766666665543332222211 1234566899
Q ss_pred HHHHHHHhH
Q 026940 101 NVKAKIQDK 109 (230)
Q Consensus 101 ~lK~~i~~~ 109 (230)
++-..+.++
T Consensus 68 ~l~~~i~~~ 76 (78)
T 1l0i_A 68 AAIDYINGH 76 (78)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 988887765
No 435
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=22.15 E-value=30 Score=22.06 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=50.9
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..|..+|++.|.+..|++... ....+.++..|.++|+.+=..+.+.......+.|.+. .. .+....||
T Consensus 3 ~~t~~~l~~ii~~~l~~~~~~-----~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~--~~-----~l~~~~Tv 70 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEESI-----DLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLG--DD-----AVEKATTP 70 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSSTT-----CSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSC--TT-----HHHHCCSH
T ss_pred cccHHHHHHHHHHHHcccccc-----ccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccC--HH-----HHHcCCCH
Confidence 458899999999999987531 1224677778889988776666666555333333221 10 11234589
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|....
T Consensus 71 ~~l~~~i~~~~ 81 (95)
T 1nq4_A 71 RALIEMTNASL 81 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887654
No 436
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=22.13 E-value=1.7e+02 Score=18.95 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=35.6
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.|.+..++++.-.++|.+..|+.+--.+.-+..++.++....+
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 3555678899999999999999999999999999987655554
No 437
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.79 E-value=63 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=31.9
Q ss_pred CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC
Q 026940 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g 199 (230)
+.++.+.|+..++=.++|+.|+..+++.+....-+ ..|
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~ 131 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD 131 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC
Confidence 35799999999999999999999999988877543 444
No 438
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.63 E-value=1.3e+02 Score=18.52 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=39.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~ 70 (230)
+|+|.+.+|..+ ++..+.|+.|+=..|....|-.. ---.++|+..+-+ +.+.+|+.+.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEE
Confidence 588988888764 57888999999888876654221 2233577655433 345667766654
No 439
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=21.21 E-value=1e+02 Score=19.26 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=23.3
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026940 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+-+.-++.-|..++..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4455668999999999888777777666653
No 440
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.16 E-value=1.7e+02 Score=18.77 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
=..++-+.+.+.+|.|.+.+.+.+.. +..+. ..|+ ..+-.-+.|+..+|++..- ...-...
T Consensus 18 l~~~l~~~l~~~l~kPe~~~~v~~~~-----~~~~~----~~g~-------~~~~~~i~i~~~~g~~~eq---k~~l~~~ 78 (113)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINT-----DQQLS----FGGS-------TNPAAFGTLMSIGGIEPSR---NRDHSAK 78 (113)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE----ETTB-------CSSCEEEEEEESSSCSHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHEEEEEeC-----CccEE----ecCC-------CCCeEEEEEEEecCCCHHH---HHHHHHH
Confidence 46677788888999999977766632 11111 1111 1222334444444432100 0123566
Q ss_pred HHHHHHhHhCCCCCCcEEEecC
Q 026940 102 VKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g 123 (230)
+-+.+++..|+|+++..+.+..
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHhCcCcCeEEEEEEE
Confidence 6677788899999998877643
No 441
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=20.73 E-value=1.9e+02 Score=19.11 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHH
Q 026940 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~l 102 (230)
..++-+.+.+.+|.|.+.+.+.+.. +....++ |+. .+-.-+.|+..+|.+.. - ...-+..+
T Consensus 20 ~~~l~~ala~~lgkPe~~~~V~~~~---~~~~~~g------g~~-------dp~~~v~I~~~~g~t~e--q-k~~l~~~i 80 (125)
T 2wkb_A 20 LSEIEDAISNILGKPVAYIMSNYDY---QKNLRFS------GSN-------EGYCFVRLTSIGGINRS--N-NSLLADKI 80 (125)
T ss_dssp HHHHHHHHHHHHCSCCTTCEEEEEE---CTTCEET------TBC-------SSCEEEEEECC-----C--T-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEEc---CCceEeC------CCC-------CCcEEEEEEECCCCCHH--H-HHHHHHHH
Confidence 4455666777899999988777642 1111111 111 22233444444443211 0 11246777
Q ss_pred HHHHHhHhCCCCCCcEEEecC
Q 026940 103 KAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 103 K~~i~~~~~i~~~~q~L~~~g 123 (230)
-+.+++..|+|+++..+.+..
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 81 TKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHhCcCcceEEEEEEE
Confidence 778888999999988776644
No 442
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.64 E-value=65 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g 199 (230)
..++.+.+...++-++.++-.-|-.++|+..++..+...|
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g 64 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPG 64 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTT
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecC
Confidence 6678888889999999999999999999988887776555
No 443
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=20.57 E-value=30 Score=21.20 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=46.9
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCcccc-cccc-ccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026940 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA-DYNI-QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~-~~~i-~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
....+++.+.+..+++.. ...+.++..|. ++|+ .+=..+.+.........|.+.... +....-.||
T Consensus 3 i~~~l~~il~~~l~~~~~-------~~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~-----l~~~~~~Tv 70 (83)
T 2amw_A 3 HLEAVRNILGDVLNLGER-------KHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE-----ISAQTFETL 70 (83)
T ss_dssp THHHHHHHHHHHTTCGGG-------GGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTT-----CCGGGSSSH
T ss_pred HHHHHHHHHHHHhCCCCc-------cccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHh-----hhHHhcCCH
Confidence 346788889999888721 13566677776 6888 766666666655443333332110 111224589
Q ss_pred HHHHHHHHhHh
Q 026940 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 71 ~~l~~~i~~~~ 81 (83)
T 2amw_A 71 GSLALFVEHKL 81 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887664
No 444
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=20.53 E-value=88 Score=23.10 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=38.1
Q ss_pred EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~ 196 (230)
+...+..+.|...++..+.+.=-...-+..|++.+...++++++.-.+.
T Consensus 80 r~~rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls 128 (191)
T 3f5r_A 80 RGCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHS 128 (191)
T ss_dssp ECSSSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSST
T ss_pred EccCCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeee
Confidence 4557778888888888787776667779999999999999877655543
No 445
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.37 E-value=1.8e+02 Score=18.56 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.|..+.+.+...-...+|.+++...+|-+. -|.|-.
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~n 47 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMN 47 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEEC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEec
Confidence 589999999999999999999999999775 455543
No 446
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.04 E-value=2e+02 Score=19.33 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=20.4
Q ss_pred CcHHHHHHHhhhhh-CCCCCceEEEec
Q 026940 21 DTIDNVKAKIQDKE-GIPPDQQRLIFA 46 (230)
Q Consensus 21 ~tv~~lK~~i~~~~-gi~~~~q~l~~~ 46 (230)
.+..+|+++|++.+ ++....-.+.|.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 49999999999999 566555666674
Done!