BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026941
         (230 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger)" Domain Of Tnf Receptor-Associated Factor 3
          Length = 66

 Score = 27.7 bits (60), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 123 RCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQ 166
           +C  CH V  +P   +  H  C  C   L+    + S KC  CQ
Sbjct: 17  KCEKCHLVLCSPKQTECGHRFCESCMAALL---SSSSPKCTACQ 57


>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
            Receptor 1
          Length = 1931

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 110  RTLLMYTRGATSVRCSC---CHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSV 160
            R +     G +++RC+     + V  +PAP     +  GHC+T   +P  +P++
Sbjct: 1315 RGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTI 1368


>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase From Thermoplasma Acidophilum,
           Native Structure
 pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase From Thermoplasma Acidophilum,
           Phosphoribosylpyrophosphate Bound Structure
 pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase From Thermoplasma Acidophilum
           With Nicotinate Mononucleotide
 pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
           Phosphoribosyltransferase From Thermoplasma Acidophilum
          Length = 398

 Score = 26.9 bits (58), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 122 VRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPH 155
           +RC+ CH + + PA  Q    ICG     L+  +
Sbjct: 334 LRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKY 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,926,980
Number of Sequences: 62578
Number of extensions: 206999
Number of successful extensions: 386
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 10
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)