BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026941
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P94077|LSD1_ARATH Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1
Length = 189
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 146/189 (77%), Gaps = 14/189 (7%)
Query: 56 LSLQGMQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGM--EMAQLICGGCRTLL 113
+ + MQ QLVC GCR++L+YPRGA+NV CALCNTI VP P +MA +ICGGCRT+L
Sbjct: 1 MKVADMQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTML 60
Query: 114 MYTRGATSVRCSCCHTVNLAPA-PNQFAH--------IICGHCRTTLMYPHGAPSVKCAV 164
MYTRGA+SVRCSCC T NL PA NQ AH I CGHCRTTLMYP+GA SVKCAV
Sbjct: 61 MYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAV 120
Query: 165 CQYVTNVNMANARVPLPANRPNGTA---IPGTLPSTSMTQTVVVENPMSVDESGKLVSNV 221
CQ+VTNVNM+N RVPLP NRPNGTA T S TQTVVVENPMSVDESGKLVSNV
Sbjct: 121 CQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNV 180
Query: 222 VVGVSTEKK 230
VVGV+T+KK
Sbjct: 181 VVGVTTDKK 189
>sp|Q6ASS2|LOL3_ORYSJ Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1
Length = 186
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 128/187 (68%), Gaps = 19/187 (10%)
Query: 61 MQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPG--MEMAQLICGGCRTLLMYTRG 118
MQSQ+VC GCRSVL YP GA +VCCALC IT+VP P MEMA LICGGCRTLLMYTR
Sbjct: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
Query: 119 ATSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARV 178
A +VRCSCC TVNL N AH+ CG CRTTLMYP+GAPSVKCA+C Y+TN M N
Sbjct: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGM-NTVA 119
Query: 179 PLPANRPNGT--------------AIPGTLPSTSMTQ--TVVVENPMSVDESGKLVSNVV 222
P P+ P + A P T TS Q TVVVENPM+VDE GKLVSNVV
Sbjct: 120 PTPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVV 179
Query: 223 VGVSTEK 229
VGV+T K
Sbjct: 180 VGVTTGK 186
>sp|Q2QMB3|LOL2_ORYSJ Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1
Length = 172
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/172 (62%), Positives = 130/172 (75%), Gaps = 3/172 (1%)
Query: 61 MQSQLVCSGCRSVLLYPRGATNVCCALCNTITS-VPIPGMEMAQLICGGCRTLLMYTRGA 119
MQSQ+VC GCR++LLYPRGA +VCCA+C+ ++S P PGM++A LICGGCRTLLMYTR A
Sbjct: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60
Query: 120 TSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVP 179
TSVRCSCC TVNL + AH+ CG C+T LMYP+GAPSVKCA+C ++TN M R
Sbjct: 61 TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-H 119
Query: 180 LPANRPNGTAIPGTLPST-SMTQTVVVENPMSVDESGKLVSNVVVGVSTEKK 230
LP N + TA + P+T S TVVVENPM+VD GKLVSNVVVGV+T K
Sbjct: 120 LPPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTTGGK 171
>sp|Q0J7V9|LSD1_ORYSJ Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1
Length = 184
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 60 GMQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGA 119
G QSQLVCSGCR++L+YP GAT+VCCA+C+T+T+VP PG EMAQL+CGGC TLLMY RGA
Sbjct: 61 GAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGA 120
Query: 120 TSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172
TSV+CSCCHTVNLA NQ AH+ CG+CR LMY +GA SVKCAVC +VT+V
Sbjct: 121 TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173
>sp|Q93ZB1|LOL1_ARATH Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1
Length = 154
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 93/110 (84%)
Query: 62 QSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATS 121
QSQLVCSGCR++L+YP GAT+VCCA+CN +T+VP PG EMAQL+CGGC TLLMY RGATS
Sbjct: 32 QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91
Query: 122 VRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNV 171
V+CSCCHTVNLA NQ AH+ CG+C LMY +GA SVKCAVC +VT+V
Sbjct: 92 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 141
>sp|Q84UR0|LOL4_ORYSJ Protein LOL4 OS=Oryza sativa subsp. japonica GN=LOL4 PE=2 SV=1
Length = 147
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 110/171 (64%), Gaps = 25/171 (14%)
Query: 61 MQSQLVCSGCRSVLLYPRGATNVCCALCNTITSV-PIPGMEMAQLICGGCRTLLMYTRGA 119
MQ QL+CSGCR V+ Y RG VCC CNT+T+V P +M++LIC GC TLL Y RGA
Sbjct: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA 60
Query: 120 TSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVP 179
+++RC C+ +N + NQ AH+ CG CRTTLM+P GA +V+CA C+YV +V A
Sbjct: 61 SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDA----- 115
Query: 180 LPANRPNGTAIPGTLPSTSMTQTVVVENPMSVDESGKLVSNVVVGVSTEKK 230
RP QTV+VENP ++D+ GKLVSNVVVGV++ K+
Sbjct: 116 ----RP---------------QTVLVENPKTLDDKGKLVSNVVVGVTSWKR 147
>sp|Q704V3|LOL5_ORYSJ Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1
Length = 163
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%)
Query: 100 EMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPS 159
E+ Q++CG CR LL Y RGA V C+CC T+N ++ + CGHC T LMYP GAP+
Sbjct: 67 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 126
Query: 160 VKCAVCQYVTNVNMANARVPLPANRPNGTAIPG 192
VKC++C +VT + N R L +P T G
Sbjct: 127 VKCSLCLFVTEIGERNVRRRLSIEQPTRTNSSG 159
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 64 QLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVR 123
Q+VC CR +L Y RGA V C C T+ V + E+ ++ CG C TLLMY GA +V+
Sbjct: 70 QMVCGSCRILLAYFRGAGYVHCTCCQTMNYV-LEAHEVGKVHCGHCATLLMYPFGAPAVK 128
Query: 124 CSCC 127
CS C
Sbjct: 129 CSLC 132
>sp|O65426|LOL2_ARATH Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=2 SV=1
Length = 155
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 69 GCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVRCSCCH 128
G S +L P T + A+ T+V IP E AQ++CG CR LL Y RG+ V+CS C
Sbjct: 29 GWESAVLPPPIVT-ITAAVNPNPTTVEIP--EKAQMVCGSCRRLLSYLRGSKHVKCSSCQ 85
Query: 129 TVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVPL 180
TVNL NQ + C +C+ LMYP+GAP+V+C+ C VT+++ N R P
Sbjct: 86 TVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPPW 137
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 62 QSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATS 121
++Q+VC CR +L Y RG+ +V C+ C T+ V + ++ Q+ C C+ LLMY GA +
Sbjct: 58 KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLV-LEANQVGQVNCNNCKLLLMYPYGAPA 116
Query: 122 VRCSCCHTV 130
VRCS C++V
Sbjct: 117 VRCSSCNSV 125
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 52 DSILLSLQGMQ-SQLVCSGCRSVLLYPRGATNVCCALCNTITSV 94
++ L L+ Q Q+ C+ C+ +L+YP GA V C+ CN++T +
Sbjct: 85 QTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDI 128
>sp|Q69UP7|LOL1_ORYSJ Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1
Length = 147
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 60 GMQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIP 97
G QSQLVCSGCR++L+YP GAT++CCA+C T+T+VP P
Sbjct: 43 GAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAP 80
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 102 AQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPAPNQ 138
+QL+C GCR LLMY GATS+ C+ C TV PAP Q
Sbjct: 46 SQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAPEQ 82
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 140 AHIICGHCRTTLMYPHGAPSVKCAVCQYVTNV 171
+ ++C CR LMYP GA S+ CAVC VT V
Sbjct: 46 SQLVCSGCRNLLMYPAGATSICCAVCGTVTAV 77
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
Length = 367
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 144 CGHCRTTLMYPHGAPSVKCAVCQYVTNV 171
C CRT L P GA S++CA+CQ VT++
Sbjct: 18 CSGCRTPLQLPSGARSIRCALCQAVTHI 45
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 67 CSGCRSVLLYPRGATNVCCALCNTITSVPIP 97
CSGCR+ L P GA ++ CALC +T + P
Sbjct: 18 CSGCRTPLQLPSGARSIRCALCQAVTHIADP 48
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 106 CGGCRTLLMYTRGATSVRCSCCHTVNLAPAPN 137
C GCRT L GA S+RC+ C V P
Sbjct: 18 CSGCRTPLQLPSGARSIRCALCQAVTHIADPR 49
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1
Length = 418
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 106 CGGCRTLLMYTRGATSVRCSCCHTVNL-APAPNQFAH 141
C CRT L GAT +RC+ CH L AP P +H
Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFTLIAPEPRLQSH 43
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 142 IICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVPLPANRPNGTAIPGTLPSTSMTQ 201
+ C CRT L P GA ++CA+C T + P P + + +A P P++S
Sbjct: 5 VDCSSCRTPLHLPPGATRIRCAICHAFTLI------APEPRLQSHASASPFPFPNSSPAP 58
Query: 202 TVVV 205
+ +
Sbjct: 59 STFI 62
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 67 CSGCRSVLLYPRGATNVCCALCNTIT 92
CS CR+ L P GAT + CA+C+ T
Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFT 32
>sp|Q81SA0|FUMC_BACAN Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1
Length = 462
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 135 APNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVP--------LPANRPN 186
APN+F H + H ++Y HGA A + N A P +PAN P
Sbjct: 259 APNKF-HALTSHDE--VVYTHGALKALAADLMKIANDVRWLASGPRSGLGEIIIPANEPG 315
Query: 187 GTAIPGTL-PSTSMTQTVVVENPMSVD 212
+ +PG + P+ S T+VV M D
Sbjct: 316 SSIMPGKVNPTQSEALTMVVAQVMGND 342
>sp|Q81F85|FUMC_BACCR Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=fumC PE=3 SV=1
Length = 462
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 135 APNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVP--------LPANRPN 186
APN+F H + H ++Y HGA A + N A P +PAN P
Sbjct: 259 APNKF-HALTSHDE--VVYTHGALKALAADLMKIANDVRWLASGPRSGLGEIIIPANEPG 315
Query: 187 GTAIPGTL-PSTSMTQTVVVENPMSVD 212
+ +PG + P+ S T+VV M D
Sbjct: 316 SSIMPGKVNPTQSEALTMVVAQVMGND 342
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 136 PNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMA-NARVPLPANRP----NGTAI 190
P H C HCR ++ G PS AVC +N++ RV LP + P AI
Sbjct: 322 PWLLQHHTCPHCRHNIIEQKGNPS---AVCVETSNLSRGRQQRVTLPVHYPGRVHRTNAI 378
Query: 191 PGTLPSTSM 199
P TSM
Sbjct: 379 PAYPTRTSM 387
>sp|B0CDA5|CCS1_ACAM1 Cytochrome c biogenesis protein CcsB OS=Acaryochloris marina
(strain MBIC 11017) GN=ccsB PE=3 SV=1
Length = 456
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 28/89 (31%)
Query: 163 AVCQYVTNVNMANARV-------------PLPA--NRPNGTAIPG--------TLPSTSM 199
V Y + ++A RV PL A R GT +P TL +T +
Sbjct: 273 GVTLYQADWSIAGVRVQLNNSPVLQLPMAPLEAAGGRIWGTWVPTKPDLSAGVTLLTTDL 332
Query: 200 TQTVVVENPMSVDESGKLVSNVVVGVSTE 228
TVVV DESGKLVS V G+ST+
Sbjct: 333 QGTVVV-----YDESGKLVSTVRTGMSTD 356
>sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1
Length = 321
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 73 VLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNL 132
VLL R +T AL N+ +P P +++A L + L T V S HT+ L
Sbjct: 144 VLLGRRDSTTASLALANS--DLPAPSLDLANLTAAFAKKRLSRT---DLVALSGAHTIGL 198
Query: 133 APAPNQFAHI 142
A N AHI
Sbjct: 199 AQCKNFRAHI 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,682,015
Number of Sequences: 539616
Number of extensions: 2980462
Number of successful extensions: 9593
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9499
Number of HSP's gapped (non-prelim): 170
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)