Query 026941
Match_columns 230
No_of_seqs 126 out of 157
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 93.4 0.053 1.8E-06 39.9 3.0 39 121-160 7-45 (66)
2 3j20_W 30S ribosomal protein S 92.5 0.081 2.8E-06 38.5 3.0 37 121-158 15-51 (63)
3 2xzm_6 RPS27E; ribosome, trans 91.8 0.16 5.4E-06 38.6 3.8 38 82-121 32-69 (81)
4 1qxf_A GR2, 30S ribosomal prot 89.7 0.21 7.3E-06 36.6 2.8 38 82-121 7-44 (66)
5 3u5c_b RP61, YS20, 40S ribosom 89.4 0.16 5.6E-06 38.6 2.1 44 77-122 28-72 (82)
6 3iz6_X 40S ribosomal protein S 89.3 0.19 6.5E-06 38.5 2.4 43 122-165 37-79 (86)
7 3j20_W 30S ribosomal protein S 88.6 0.31 1.1E-05 35.4 3.0 42 77-120 9-51 (63)
8 2xzm_6 RPS27E; ribosome, trans 85.5 0.57 2E-05 35.5 3.1 44 121-165 32-75 (81)
9 3u5c_b RP61, YS20, 40S ribosom 79.6 0.59 2E-05 35.6 1.1 44 121-165 34-77 (82)
10 1gh9_A 8.3 kDa protein (gene M 78.0 1.8 6.1E-05 31.7 3.3 32 139-172 2-33 (71)
11 3iz6_X 40S ribosomal protein S 77.6 0.49 1.7E-05 36.3 0.1 52 70-123 23-75 (86)
12 2ppt_A Thioredoxin-2; thiredox 74.1 0.85 2.9E-05 35.0 0.7 30 122-151 15-44 (155)
13 3hcs_A TNF receptor-associated 70.9 1.8 6E-05 34.1 1.8 100 62-167 16-145 (170)
14 3p2a_A Thioredoxin 2, putative 69.7 1.7 5.7E-05 32.2 1.4 31 121-151 5-35 (148)
15 1gh9_A 8.3 kDa protein (gene M 62.2 8.2 0.00028 28.1 3.8 32 102-135 3-34 (71)
16 1pft_A TFIIB, PFTFIIBN; N-term 62.0 3.5 0.00012 27.0 1.6 29 142-170 6-35 (50)
17 1pft_A TFIIB, PFTFIIBN; N-term 56.1 11 0.00037 24.6 3.2 30 102-131 4-34 (50)
18 2jne_A Hypothetical protein YF 49.5 15 0.00052 28.8 3.6 56 104-168 33-90 (101)
19 1wii_A Hypothetical UPF0222 pr 46.8 16 0.00055 27.4 3.3 37 121-157 23-63 (85)
20 2yrc_A Protein transport prote 45.4 15 0.00051 25.6 2.7 40 137-176 5-50 (59)
21 2jrp_A Putative cytoplasmic pr 44.2 29 0.00098 26.0 4.3 14 156-169 48-61 (81)
22 3na7_A HP0958; flagellar bioge 43.5 7.3 0.00025 33.2 1.1 29 143-171 200-234 (256)
23 2ppt_A Thioredoxin-2; thiredox 41.8 5.1 0.00018 30.6 -0.1 8 214-221 127-134 (155)
24 2yrc_A Protein transport prote 39.0 17 0.00057 25.4 2.2 20 116-135 28-47 (59)
25 2dkt_A Ring finger and CHY zin 37.1 72 0.0025 26.0 6.0 42 82-128 27-78 (143)
26 2ct7_A Ring finger protein 31; 37.1 22 0.00076 25.6 2.7 27 144-170 28-54 (86)
27 2ct7_A Ring finger protein 31; 36.8 25 0.00085 25.3 2.9 23 106-128 28-50 (86)
28 1bor_A Transcription factor PM 36.2 19 0.00065 23.4 2.0 42 123-171 8-49 (56)
29 2jne_A Hypothetical protein YF 34.7 50 0.0017 25.9 4.4 65 58-132 26-92 (101)
30 2fiy_A Protein FDHE homolog; F 34.3 62 0.0021 28.9 5.7 28 99-130 204-231 (309)
31 1vq8_Z 50S ribosomal protein L 32.0 18 0.00062 26.9 1.5 33 138-170 24-56 (83)
32 2e2z_A TIM15; protein import, 30.3 14 0.00049 28.8 0.7 38 54-91 3-47 (100)
33 2hf1_A Tetraacyldisaccharide-1 30.2 39 0.0013 24.1 2.9 34 139-172 6-39 (68)
34 1wii_A Hypothetical UPF0222 pr 29.5 53 0.0018 24.5 3.7 40 81-120 22-64 (85)
35 2ku7_A MLL1 PHD3-CYP33 RRM chi 28.6 79 0.0027 22.8 4.5 20 195-214 58-78 (140)
36 3j20_Y 30S ribosomal protein S 27.3 32 0.0011 23.1 2.0 25 143-167 21-45 (50)
37 2js4_A UPF0434 protein BB2007; 27.2 35 0.0012 24.5 2.3 29 144-172 11-39 (70)
38 2hf1_A Tetraacyldisaccharide-1 26.5 31 0.001 24.7 1.8 29 104-132 9-37 (68)
39 2js4_A UPF0434 protein BB2007; 26.3 43 0.0015 24.0 2.6 27 102-128 7-33 (70)
40 2jr6_A UPF0434 protein NMA0874 26.3 32 0.0011 24.6 1.9 12 105-116 10-21 (68)
41 1twf_I B12.6, DNA-directed RNA 25.8 26 0.00089 27.1 1.5 32 141-172 4-39 (122)
42 3hct_A TNF receptor-associated 25.8 13 0.00046 27.4 -0.2 49 61-131 15-63 (118)
43 2pk7_A Uncharacterized protein 25.6 37 0.0013 24.3 2.1 33 140-172 7-39 (69)
44 2pk7_A Uncharacterized protein 25.4 28 0.00095 25.0 1.5 13 105-117 10-22 (69)
45 2jr6_A UPF0434 protein NMA0874 25.4 41 0.0014 24.0 2.4 34 139-172 6-39 (68)
46 3h0g_L DNA-directed RNA polyme 24.2 24 0.00083 25.2 0.9 26 141-167 21-46 (63)
47 3ec1_A YQEH GTPase; atnos1, at 23.5 17 0.00058 32.2 0.0 46 61-117 1-50 (369)
48 2k2d_A Ring finger and CHY zin 23.5 1.3E+02 0.0045 21.8 4.8 47 137-183 33-79 (79)
49 1v98_A Thioredoxin; oxidoreduc 23.4 17 0.00058 26.4 0.0 13 83-95 3-15 (140)
50 1vq8_Z 50S ribosomal protein L 23.3 41 0.0014 24.9 2.1 32 101-132 25-56 (83)
51 2fiy_A Protein FDHE homolog; F 22.9 75 0.0026 28.4 4.1 72 81-171 181-265 (309)
52 3nw0_A Non-structural maintena 21.7 82 0.0028 26.8 3.9 39 122-167 181-225 (238)
53 1faq_A RAF-1; transferase, ser 21.3 64 0.0022 20.6 2.5 25 141-170 14-38 (52)
54 2jny_A Uncharacterized BCR; st 20.8 46 0.0016 23.8 1.8 33 104-136 11-43 (67)
55 3h2y_A GTPase family protein; 20.8 21 0.00071 31.7 0.0 46 61-117 1-48 (368)
56 2fc9_A NCL protein; structure 20.6 78 0.0027 21.7 3.0 20 194-213 9-29 (101)
57 2ytc_A PRE-mRNA-splicing facto 20.3 66 0.0023 21.2 2.5 21 194-214 6-27 (85)
58 3gnf_B MVP, major vault protei 20.1 53 0.0018 30.8 2.6 22 197-218 57-78 (387)
59 1rfh_A RAS association (ralgds 20.1 69 0.0024 21.5 2.6 24 142-169 23-46 (59)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=93.41 E-value=0.053 Score=39.85 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEeCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCCeE
Q 026941 121 SVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSV 160 (230)
Q Consensus 121 sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~sV 160 (230)
.|+|+.|..++.|=+-++. .|.|..|.++|--|.|-.+-
T Consensus 7 ~VKCp~C~niq~VFShA~t-vV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPST-IVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEESSCSS-CEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEEecCce-EEEcccCCCEEeecCCccee
Confidence 5899999988887665555 78999999999999876543
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.53 E-value=0.081 Score=38.49 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred eEeCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCC
Q 026941 121 SVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAP 158 (230)
Q Consensus 121 sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~ 158 (230)
.|+|+.|..++.|=+-.+. .|.|.+|.+.|--|.|-.
T Consensus 15 ~VkCp~C~~~q~VFSha~t-~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPAT-KVRCLICGATLVEPTGGK 51 (63)
T ss_dssp EEECSSSCCEEEEESSCSS-CEECSSSCCEEEECCSSS
T ss_pred EEECCCCCCeeEEEecCCe-EEEccCcCCEEecCCCCc
Confidence 4666666666655443333 567777777777776643
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=91.75 E-value=0.16 Score=38.60 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=20.5
Q ss_pred eeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCe
Q 026941 82 NVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATS 121 (230)
Q Consensus 82 ~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~s 121 (230)
-|+|+.|..++.|= ++....+.|.+|.++|..|.|--.
T Consensus 32 ~VkCp~C~n~q~VF--ShA~t~V~C~~Cg~~L~~PTGGKA 69 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF--SNAQSTIICEKCSAILCKPTGGKV 69 (81)
T ss_dssp EEECSSSCCEEEEE--TTCSSCEECSSSCCEEEEECSSCE
T ss_pred EeECCCCCCeeEEE--ecCccEEEccCCCCEEeecCCCCe
Confidence 35666665555552 233445555555555555555443
No 4
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=89.70 E-value=0.21 Score=36.63 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=24.3
Q ss_pred eeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCe
Q 026941 82 NVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATS 121 (230)
Q Consensus 82 ~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~s 121 (230)
.|+|+.|..++-+= +.....+.|.+|.++|..|.|-..
T Consensus 7 ~VKCp~C~niq~VF--ShA~tvV~C~~Cg~~L~~PTGGKA 44 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF--DHPSTIVKCIICGRTVAEPTGGKG 44 (66)
T ss_dssp EEECTTTCCEEEEE--SSCSSCEECSSSCCEEEECCSSSC
T ss_pred EEECCCCCCceEEE--ecCceEEEcccCCCEEeecCCcce
Confidence 36777776666652 233456777777777777777543
No 5
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=89.40 E-value=0.16 Score=38.62 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=23.1
Q ss_pred cCCC-CeeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCeE
Q 026941 77 PRGA-TNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSV 122 (230)
Q Consensus 77 P~GA-~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~sV 122 (230)
|++- .-|+|+.|..++-|= ++....+.|.+|.++|..|.|--.-
T Consensus 28 PnS~Fm~VkCp~C~~~q~VF--Sha~t~V~C~~Cg~~L~~PTGGKa~ 72 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVF--SHAQTAVTCESCSTILCTPTGGKAK 72 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEE--SBCSSCCCCSSSCCCCEECCSSBCE
T ss_pred CCCcEEEEECCCCCCeeEEE--ecCCeEEEccccCCEEeccCCCCeE
Confidence 4443 246666666666552 3334455566666666655554433
No 6
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.26 E-value=0.19 Score=38.53 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=22.2
Q ss_pred EeCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCCeEeCCCC
Q 026941 122 VRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVC 165 (230)
Q Consensus 122 VrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~sVrCa~C 165 (230)
|+|+.|..++.|=+-++. .|.|.+|.+.|--|.|-.+--=..|
T Consensus 37 VkCp~C~~~~~VFShA~t-~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQT-VVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EECTTTCCEEEEETTCSS-CCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EECCCCCCeeEEEecCCc-EEEccCCCCEeecCCCCCEEecCCc
Confidence 555555555554433333 4556666666666655544433333
No 7
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.62 E-value=0.31 Score=35.44 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=25.5
Q ss_pred cCCC-CeeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCC
Q 026941 77 PRGA-TNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGAT 120 (230)
Q Consensus 77 P~GA-~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~ 120 (230)
|++. .-|+|+.|..++-+= ++....+.|.+|.++|..|.|--
T Consensus 9 PnS~Fm~VkCp~C~~~q~VF--Sha~t~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 9 PRSRFLRVKCIDCGNEQIVF--SHPATKVRCLICGATLVEPTGGK 51 (63)
T ss_dssp CSCCEEEEECSSSCCEEEEE--SSCSSCEECSSSCCEEEECCSSS
T ss_pred CCCcEEEEECCCCCCeeEEE--ecCCeEEEccCcCCEEecCCCCc
Confidence 4444 247777776666652 23345677777777777777643
No 8
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=85.55 E-value=0.57 Score=35.53 Aligned_cols=44 Identities=30% Similarity=0.610 Sum_probs=23.7
Q ss_pred eEeCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCCeEeCCCC
Q 026941 121 SVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVC 165 (230)
Q Consensus 121 sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~sVrCa~C 165 (230)
.|+|+.|..++.|=+-++. .|.|.+|.+.|--|.|-.+--=..|
T Consensus 32 ~VkCp~C~n~q~VFShA~t-~V~C~~Cg~~L~~PTGGKA~l~egc 75 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQS-TIICEKCSAILCKPTGGKVQIQAGC 75 (81)
T ss_dssp EEECSSSCCEEEEETTCSS-CEECSSSCCEEEEECSSCEEECSSC
T ss_pred EeECCCCCCeeEEEecCcc-EEEccCCCCEEeecCCCCeEecCCc
Confidence 3555555555555443333 5666666666666666554433333
No 9
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=79.63 E-value=0.59 Score=35.56 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=23.1
Q ss_pred eEeCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCCeEeCCCC
Q 026941 121 SVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVC 165 (230)
Q Consensus 121 sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~sVrCa~C 165 (230)
.|+|+.|..++.|=+-++. .|.|.+|.+.|--|.|-.+--=..|
T Consensus 34 ~VkCp~C~~~q~VFSha~t-~V~C~~Cg~~L~~PTGGKa~l~egc 77 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQT-AVTCESCSTILCTPTGGKAKLSEGT 77 (82)
T ss_dssp EEECTTSCSCEEEESBCSS-CCCCSSSCCCCEECCSSBCEECSSC
T ss_pred EEECCCCCCeeEEEecCCe-EEEccccCCEEeccCCCCeEecCCc
Confidence 3555555555555443333 4566666666666665544433333
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=78.00 E-value=1.8 Score=31.65 Aligned_cols=32 Identities=31% Similarity=0.667 Sum_probs=28.2
Q ss_pred eeEEEcCCCCeeeeccCCCCeEeCCCCCcceeec
Q 026941 139 FAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 139 ~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~ 172 (230)
.+-+.|. |+..+..-.|+.+.+|+ |+.+.++.
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 4568899 99999999999999998 99998885
No 11
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.59 E-value=0.49 Score=36.27 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=27.2
Q ss_pred cceeeeecCCC-CeeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCeEe
Q 026941 70 CRSVLLYPRGA-TNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVR 123 (230)
Q Consensus 70 Cr~lL~YP~GA-~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~sVr 123 (230)
-..|..-|++- .-|+|+.|..++.+= ++....+.|.+|.++|..|.|--.-.
T Consensus 23 ~k~Lv~~PnS~Fm~VkCp~C~~~~~VF--ShA~t~V~C~~CgtvL~~PTGGKa~l 75 (86)
T 3iz6_X 23 KKRLVQSPNSFFMDVKCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKARL 75 (86)
T ss_dssp ----------CEEEEECTTTCCEEEEE--TTCSSCCCCSSSCCCCSCCCSSSCCC
T ss_pred heeeccCCCCcEeEEECCCCCCeeEEE--ecCCcEEEccCCCCEeecCCCCCEEe
Confidence 34444445554 348888887777762 23345677777777777777754433
No 12
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=74.11 E-value=0.85 Score=35.03 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=13.4
Q ss_pred EeCCCCCcceecCCCCceeEEEcCCCCeee
Q 026941 122 VRCSCCHTVNLAPAPNQFAHIICGHCRTTL 151 (230)
Q Consensus 122 VrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~L 151 (230)
+.|+.|+++|.+|+......-.||.|+..|
T Consensus 15 ~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 15 LTCLACGQANKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EECTTTCCEEEEEGGGTTSCCBCTTTCCBS
T ss_pred EECccccccccCCcccccCCCCCCcCCccc
Confidence 444445555544443333333445544443
No 13
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=70.91 E-value=1.8 Score=34.11 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=49.5
Q ss_pred cceeeccccceeeeecCCC--CeeecCCCCcccccCCCCCceeEEEeCCcceeEEe----e-------cCCCeEeCC--C
Q 026941 62 QSQLVCSGCRSVLLYPRGA--TNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMY----T-------RGATSVRCS--C 126 (230)
Q Consensus 62 qsQlvC~gCr~lL~YP~GA--~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~Y----P-------~GA~sVrC~--~ 126 (230)
...+.|.-|..++.-|.-. .++-|..|-.--.. .+...|.-||..|.. | .....|.|+ .
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~G 89 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIR------DAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEG 89 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH------HHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTT
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH------hCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCC
Confidence 5778999999888655221 11222222110000 011156666555432 1 123456663 5
Q ss_pred CCcceecCC------CCceeEEEcCCCCeeeecc---------CCCCeEeCCCCCc
Q 026941 127 CHTVNLAPA------PNQFAHIICGHCRTTLMYP---------HGAPSVKCAVCQY 167 (230)
Q Consensus 127 C~tVn~Vp~------~~q~a~V~Cg~Crt~LmyP---------~GA~sVrCa~C~~ 167 (230)
|..+..... .=+...+.|.+|...+..- =..+.+.|+.|..
T Consensus 90 C~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~ 145 (170)
T 3hcs_A 90 CLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAA 145 (170)
T ss_dssp CCCEEEGGGHHHHHTTCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCC
T ss_pred CCceecHhHHHHHHhcCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCC
Confidence 655544322 1144567777777765432 2346677777765
No 14
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=69.73 E-value=1.7 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEeCCCCCcceecCCCCceeEEEcCCCCeee
Q 026941 121 SVRCSCCHTVNLAPAPNQFAHIICGHCRTTL 151 (230)
Q Consensus 121 sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~L 151 (230)
.+.|+.|...|.+|+........|+.|...+
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCCCCcccccCCcchhcCCcc
Confidence 4556666666666665555555666666654
No 15
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=62.17 E-value=8.2 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=27.3
Q ss_pred eEEEeCCcceeEEeecCCCeEeCCCCCcceecCC
Q 026941 102 AQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPA 135 (230)
Q Consensus 102 ~qLvCggCr~lL~YP~GA~sVrC~~C~tVn~Vp~ 135 (230)
.-+.|. |+..+.-..|+...+|+ |.....+..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 557898 99999999999999998 998877653
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.00 E-value=3.5 Score=27.04 Aligned_cols=29 Identities=31% Similarity=0.789 Sum_probs=16.2
Q ss_pred EEcCCCCe-eeeccCCCCeEeCCCCCccee
Q 026941 142 IICGHCRT-TLMYPHGAPSVKCAVCQYVTN 170 (230)
Q Consensus 142 V~Cg~Crt-~LmyP~GA~sVrCa~C~~VT~ 170 (230)
+.|..|.. .|.|-+.+....|..|..|-.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 34555555 555555555566666655543
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=56.09 E-value=11 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.613 Sum_probs=19.3
Q ss_pred eEEEeCCcce-eEEeecCCCeEeCCCCCcce
Q 026941 102 AQLICGGCRT-LLMYTRGATSVRCSCCHTVN 131 (230)
Q Consensus 102 ~qLvCggCr~-lL~YP~GA~sVrC~~C~tVn 131 (230)
..+.|..|.. -|.|-..+....|..|..|-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4456777766 66666666666777666653
No 18
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=49.46 E-value=15 Score=28.78 Aligned_cols=56 Identities=23% Similarity=0.471 Sum_probs=31.1
Q ss_pred EEeCCcceeEEeecCCCeEeCCCCCcceecCCCCceeEEEcCCCCeeeeccC--CCCeEeCCCCCcc
Q 026941 104 LICGGCRTLLMYTRGATSVRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPH--GAPSVKCAVCQYV 168 (230)
Q Consensus 104 LvCggCr~lL~YP~GA~sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~--GA~sVrCa~C~~V 168 (230)
+.|..|...|..- |- ...|..|+.-- ...-.|..|...|..=. ||..+-|..|+..
T Consensus 33 ~~CP~Cq~eL~~~-g~-~~hC~~C~~~f-------~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 33 LHCPQCQHVLDQD-NG-HARCRSCGEFI-------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp CBCSSSCSBEEEE-TT-EEEETTTCCEE-------EEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred ccCccCCCcceec-CC-EEECccccchh-------hccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 5666666666543 22 44566665421 12456666666665433 6666666666653
No 19
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=46.84 E-value=16 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=21.9
Q ss_pred eEeCCCCCcceecC----CCCceeEEEcCCCCeeeeccCCC
Q 026941 121 SVRCSCCHTVNLAP----APNQFAHIICGHCRTTLMYPHGA 157 (230)
Q Consensus 121 sVrC~~C~tVn~Vp----~~~q~a~V~Cg~Crt~LmyP~GA 157 (230)
...||-|+..+.|. -....+.+.|+.|.....++.++
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~ 63 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITY 63 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCS
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCc
Confidence 44566666664432 13456777777777666665554
No 20
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=45.35 E-value=15 Score=25.64 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=27.4
Q ss_pred CceeEEEcCC--CCeee----eccCCCCeEeCCCCCcceeeccCCC
Q 026941 137 NQFAHIICGH--CRTTL----MYPHGAPSVKCAVCQYVTNVNMANA 176 (230)
Q Consensus 137 ~q~a~V~Cg~--Crt~L----myP~GA~sVrCa~C~~VT~V~~~n~ 176 (230)
.+..-++|.. ||.-| .+-.|....+|..|...+++.+...
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHh
Confidence 3455677776 77654 2335678899999999998865443
No 21
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.19 E-value=29 Score=26.02 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.4
Q ss_pred CCCeEeCCCCCcce
Q 026941 156 GAPSVKCAVCQYVT 169 (230)
Q Consensus 156 GA~sVrCa~C~~VT 169 (230)
||.++-|..|+..-
T Consensus 48 GA~~yFC~~C~~Li 61 (81)
T 2jrp_A 48 GAVDYFCQNGHGLI 61 (81)
T ss_dssp TEEEECCTTTTCCC
T ss_pred CCcCeeeccCCCEe
Confidence 44455566665543
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.46 E-value=7.3 Score=33.18 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=18.3
Q ss_pred EcCCCCeeee------ccCCCCeEeCCCCCcceee
Q 026941 143 ICGHCRTTLM------YPHGAPSVKCAVCQYVTNV 171 (230)
Q Consensus 143 ~Cg~Crt~Lm------yP~GA~sVrCa~C~~VT~V 171 (230)
.|+||++.|- +-.|-.-+.|+.|+.+-.-
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 5777777662 1135566788888776653
No 23
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=41.84 E-value=5.1 Score=30.58 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=4.7
Q ss_pred CCceeeee
Q 026941 214 SGKLVSNV 221 (230)
Q Consensus 214 ~GklVsnv 221 (230)
+||++...
T Consensus 127 ~G~~~~~~ 134 (155)
T 2ppt_A 127 KGRELARA 134 (155)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEe
Confidence 47776543
No 24
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=39.02 E-value=17 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.9
Q ss_pred ecCCCeEeCCCCCcceecCC
Q 026941 116 TRGATSVRCSCCHTVNLAPA 135 (230)
Q Consensus 116 P~GA~sVrC~~C~tVn~Vp~ 135 (230)
-.+...-+|+.|...|.+|+
T Consensus 28 ~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 28 DYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp EGGGTEEECSSSCCEEECCS
T ss_pred ECCCCEEEcccCCCcCCCCH
Confidence 34667888999999998875
No 25
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.13 E-value=72 Score=26.03 Aligned_cols=42 Identities=14% Similarity=0.417 Sum_probs=28.0
Q ss_pred eeecCCCCcccc----------cCCCCCceeEEEeCCcceeEEeecCCCeEeCCCCC
Q 026941 82 NVCCALCNTITS----------VPIPGMEMAQLICGGCRTLLMYTRGATSVRCSCCH 128 (230)
Q Consensus 82 ~VrCa~C~tVt~----------Vpp~~~q~~qLvCggCr~lL~YP~GA~sVrC~~C~ 128 (230)
.++|+.|+..-+ -+-...+...++|+.|++.+-+- -.|+.|+
T Consensus 27 ~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~-----~~C~~Cg 78 (143)
T 2dkt_A 27 LLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQ-----QTCEDCS 78 (143)
T ss_dssp EEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSC-----SBCSSSC
T ss_pred eEECCCCCCccchhhhhccccccccchhccceeeecccCcccccc-----CcCCCCC
Confidence 578888876433 12223456799999999998542 2688774
No 26
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.12 E-value=22 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.593 Sum_probs=13.2
Q ss_pred cCCCCeeeeccCCCCeEeCCCCCccee
Q 026941 144 CGHCRTTLMYPHGAPSVKCAVCQYVTN 170 (230)
Q Consensus 144 Cg~Crt~LmyP~GA~sVrCa~C~~VT~ 170 (230)
|.+|...++...+...|.|+.|++..=
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC 54 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFC 54 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred CcCCCchheecCCCCceEeCCCCCccc
Confidence 444544444444444455555555443
No 27
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.80 E-value=25 Score=25.32 Aligned_cols=23 Identities=30% Similarity=0.832 Sum_probs=9.7
Q ss_pred eCCcceeEEeecCCCeEeCCCCC
Q 026941 106 CGGCRTLLMYTRGATSVRCSCCH 128 (230)
Q Consensus 106 CggCr~lL~YP~GA~sVrC~~C~ 128 (230)
|.+|...++...+...|.|+.|+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTC
T ss_pred CcCCCchheecCCCCceEeCCCC
Confidence 44444444333333344444443
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.23 E-value=19 Score=23.37 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=21.7
Q ss_pred eCCCCCcceecCCCCceeEEEcCCCCeeeeccCCCCeEeCCCCCcceee
Q 026941 123 RCSCCHTVNLAPAPNQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNV 171 (230)
Q Consensus 123 rC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V 171 (230)
.|+.|...-..|..-.=+|.-|..|-.. ...+|+.|+....+
T Consensus 8 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSSSC
T ss_pred CceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEeec
Confidence 4555554433332222334455556433 35678888776554
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.72 E-value=50 Score=25.87 Aligned_cols=65 Identities=23% Similarity=0.451 Sum_probs=44.5
Q ss_pred CcCccceeeccccceeeeecCCCCeeecCCCCcccccCCCCCceeEEEeCCcceeEEe--ecCCCeEeCCCCCccee
Q 026941 58 LQGMQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMY--TRGATSVRCSCCHTVNL 132 (230)
Q Consensus 58 ~~~mqsQlvC~gCr~lL~YP~GA~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~Y--P~GA~sVrC~~C~tVn~ 132 (230)
+.+|.=++.|..|++.|.. .|- ...|..|+.- -..+..|..|...|-- .=||...-|..|+...+
T Consensus 26 ~~~~~M~~~CP~Cq~eL~~-~g~-~~hC~~C~~~--------f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiS 92 (101)
T 2jne_A 26 PRGSHMELHCPQCQHVLDQ-DNG-HARCRSCGEF--------IEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLIS 92 (101)
T ss_dssp -----CCCBCSSSCSBEEE-ETT-EEEETTTCCE--------EEEEEECTTTCSBCEEEEETTEEEEEETTTTEEEC
T ss_pred cCcccccccCccCCCccee-cCC-EEECccccch--------hhccccCcchhhHHHHHHHhcCcchhhccCCceee
Confidence 4443234999999999985 443 6679999762 1367889999988754 45788888888877654
No 30
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.28 E-value=62 Score=28.93 Aligned_cols=28 Identities=29% Similarity=0.575 Sum_probs=23.0
Q ss_pred CceeEEEeCCcceeEEeecCCCeEeCCCCCcc
Q 026941 99 MEMAQLICGGCRTLLMYTRGATSVRCSCCHTV 130 (230)
Q Consensus 99 ~q~~qLvCggCr~lL~YP~GA~sVrC~~C~tV 130 (230)
....++.|+-|.+.=-|+|. +|+.|..-
T Consensus 204 ~G~R~l~Cs~C~t~W~~~R~----~C~~Cg~~ 231 (309)
T 2fiy_A 204 TGLRYLSCSLCACEWHYVRI----KCSHCEES 231 (309)
T ss_dssp CCEEEEEETTTCCEEECCTT----SCSSSCCC
T ss_pred CCcEEEEeCCCCCEEeecCc----CCcCCCCC
Confidence 34568999999999999875 89999764
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=32.00 E-value=18 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=28.3
Q ss_pred ceeEEEcCCCCeeeeccCCCCeEeCCCCCccee
Q 026941 138 QFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTN 170 (230)
Q Consensus 138 q~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~ 170 (230)
|-..-.|..|...+++.+++...+|..|.++-.
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 455778999999999999999999999998654
No 32
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=30.32 E-value=14 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.518 Sum_probs=23.1
Q ss_pred ccccCcCccceeecccccee-------eeecCCCCeeecCCCCcc
Q 026941 54 ILLSLQGMQSQLVCSGCRSV-------LLYPRGATNVCCALCNTI 91 (230)
Q Consensus 54 ~l~~~~~mqsQlvC~gCr~l-------L~YP~GA~~VrCa~C~tV 91 (230)
+-+..+.|+-+..|..|.+- ..|-.|...|+|+.|+.-
T Consensus 3 ~k~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 3 HMVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp CCSCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred CcCCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 33455666777777777652 345566666777777543
No 33
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.18 E-value=39 Score=24.15 Aligned_cols=34 Identities=12% Similarity=0.429 Sum_probs=27.0
Q ss_pred eeEEEcCCCCeeeeccCCCCeEeCCCCCcceeec
Q 026941 139 FAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 139 ~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~ 172 (230)
...+.|..|+..|.|-.......|+.|+..-.|+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 4567888888888888777788888888887776
No 34
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.50 E-value=53 Score=24.52 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=28.2
Q ss_pred CeeecCCCCcccccC---CCCCceeEEEeCCcceeEEeecCCC
Q 026941 81 TNVCCALCNTITSVP---IPGMEMAQLICGGCRTLLMYTRGAT 120 (230)
Q Consensus 81 ~~VrCa~C~tVt~Vp---p~~~q~~qLvCggCr~lL~YP~GA~ 120 (230)
..-.|+.|++.++|- --....+.+.|+-|...-.++.++.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L 64 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL 64 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSS
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCcc
Confidence 346799998887661 1134579999999988777766553
No 35
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=28.63 E-value=79 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=14.5
Q ss_pred CCCCCceEEEEeC-CCCccCC
Q 026941 195 PSTSMTQTVVVEN-PMSVDES 214 (230)
Q Consensus 195 ~~~~~~qtVvVEn-P~tvde~ 214 (230)
.+.++..+|+|.| |..++++
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~ 78 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDK 78 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHH
T ss_pred CCCCCCcEEEEEeCCCCCCHH
Confidence 4455688999999 7666653
No 36
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.32 E-value=32 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.650 Sum_probs=12.3
Q ss_pred EcCCCCeeeeccCCCCeEeCCCCCc
Q 026941 143 ICGHCRTTLMYPHGAPSVKCAVCQY 167 (230)
Q Consensus 143 ~Cg~Crt~LmyP~GA~sVrCa~C~~ 167 (230)
.|..|...++.........|+.|++
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCC
T ss_pred cCCCCCCceEEecCCCeEECCCCCC
Confidence 4555554333333345556666554
No 37
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.24 E-value=35 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=11.7
Q ss_pred cCCCCeeeeccCCCCeEeCCCCCcceeec
Q 026941 144 CGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 144 Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~ 172 (230)
|..|+..|.|-.......|..|+..-.|+
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 11 CPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 33333334433333334444444444443
No 38
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.49 E-value=31 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=13.8
Q ss_pred EEeCCcceeEEeecCCCeEeCCCCCccee
Q 026941 104 LICGGCRTLLMYTRGATSVRCSCCHTVNL 132 (230)
Q Consensus 104 LvCggCr~lL~YP~GA~sVrC~~C~tVn~ 132 (230)
|+|..|..-|.|-.......|+.|+..-.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 44555555555554444444444444333
No 39
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.33 E-value=43 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=15.6
Q ss_pred eEEEeCCcceeEEeecCCCeEeCCCCC
Q 026941 102 AQLICGGCRTLLMYTRGATSVRCSCCH 128 (230)
Q Consensus 102 ~qLvCggCr~lL~YP~GA~sVrC~~C~ 128 (230)
.-|+|..|+.-|.|-.......|+.|+
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADR 33 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTT
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCC
Confidence 346777777777776544344444443
No 40
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.28 E-value=32 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=4.6
Q ss_pred EeCCcceeEEee
Q 026941 105 ICGGCRTLLMYT 116 (230)
Q Consensus 105 vCggCr~lL~YP 116 (230)
+|..|..-|.|-
T Consensus 10 ~CP~ck~~L~~~ 21 (68)
T 2jr6_A 10 VCPVTKGRLEYH 21 (68)
T ss_dssp BCSSSCCBCEEE
T ss_pred ECCCCCCcCeEe
Confidence 333333333333
No 41
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=25.79 E-value=26 Score=27.10 Aligned_cols=32 Identities=22% Similarity=0.554 Sum_probs=21.0
Q ss_pred EEEcCCCCeeeeccC----CCCeEeCCCCCcceeec
Q 026941 141 HIICGHCRTTLMYPH----GAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 141 ~V~Cg~Crt~LmyP~----GA~sVrCa~C~~VT~V~ 172 (230)
..-|..|..+|..+. +...+.|..|.+...+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 455777777776663 34567788887766543
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=25.76 E-value=13 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=28.8
Q ss_pred ccceeeccccceeeeecCCCCeeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCeEeCCCCCcce
Q 026941 61 MQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVRCSCCHTVN 131 (230)
Q Consensus 61 mqsQlvC~gCr~lL~YP~GA~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~sVrC~~C~tVn 131 (230)
....+.|.-|..++.-| |..+ =+|..|..|-...+-..+. .||.|....
T Consensus 15 ~~~~~~C~IC~~~~~~p-----~~~~--------------CgH~fC~~Ci~~~~~~~~~---~CP~Cr~~~ 63 (118)
T 3hct_A 15 LESKYECPICLMALREA-----VQTP--------------CGHRFCKACIIKSIRDAGH---KCPVDNEIL 63 (118)
T ss_dssp CCGGGBCTTTCSBCSSE-----EECT--------------TSCEEEHHHHHHHHHHHCS---BCTTTCCBC
T ss_pred CCCCCCCCcCChhhcCe-----EECC--------------cCChhhHHHHHHHHhhCCC---CCCCCCCCc
Confidence 35678888888777544 2111 1566777776554322221 788886553
No 43
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.55 E-value=37 Score=24.30 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=25.2
Q ss_pred eEEEcCCCCeeeeccCCCCeEeCCCCCcceeec
Q 026941 140 AHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 140 a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~ 172 (230)
..+.|..|+..|.|-.......|..|+..-.|+
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 346788888888887777777888888777775
No 44
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.43 E-value=28 Score=24.96 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=5.3
Q ss_pred EeCCcceeEEeec
Q 026941 105 ICGGCRTLLMYTR 117 (230)
Q Consensus 105 vCggCr~lL~YP~ 117 (230)
+|..|..-|.|-.
T Consensus 10 ~CP~ck~~L~~~~ 22 (69)
T 2pk7_A 10 ACPICKGPLKLSA 22 (69)
T ss_dssp CCTTTCCCCEECT
T ss_pred eCCCCCCcCeEeC
Confidence 3444444444433
No 45
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.37 E-value=41 Score=23.99 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=29.2
Q ss_pred eeEEEcCCCCeeeeccCCCCeEeCCCCCcceeec
Q 026941 139 FAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVN 172 (230)
Q Consensus 139 ~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~ 172 (230)
...+.|..|+..|.|-.......|+.|+..-.|+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 3457899999999998888888999999988886
No 46
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.23 E-value=24 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=13.2
Q ss_pred EEEcCCCCeeeeccCCCCeEeCCCCCc
Q 026941 141 HIICGHCRTTLMYPHGAPSVKCAVCQY 167 (230)
Q Consensus 141 ~V~Cg~Crt~LmyP~GA~sVrCa~C~~ 167 (230)
.-.|+.|....-+-.+ ..+||+-|.+
T Consensus 21 ~Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred EEECCCCCCeeecCCC-CceECCCCCc
Confidence 3455555555544433 3356655555
No 47
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=23.46 E-value=17 Score=32.21 Aligned_cols=46 Identities=33% Similarity=0.716 Sum_probs=0.0
Q ss_pred ccceeeccccceeeee--cCCCCeeecCCCCcccccCCCCCc--eeEEEeCCcceeEEeec
Q 026941 61 MQSQLVCSGCRSVLLY--PRGATNVCCALCNTITSVPIPGME--MAQLICGGCRTLLMYTR 117 (230)
Q Consensus 61 mqsQlvC~gCr~lL~Y--P~GA~~VrCa~C~tVt~Vpp~~~q--~~qLvCggCr~lL~YP~ 117 (230)
|..++.|.||-..|.+ |..+..+ |.+.-+ ..++.|..|..+.-|-.
T Consensus 1 ~~~~~~C~gcG~~lq~~~~~~~gy~-----------p~~~~~~~~~~~~C~RC~~l~hy~~ 50 (369)
T 3ec1_A 1 MEPQLRCIGCGAAIQFENPKNAGYA-----------PKSVLEKDAEEVICQRCFRLKHYNE 50 (369)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCceeCCCCceeecCCCCCCCCC-----------ChHHhcCCCCCEEchhHHHhhcccc
Confidence 4456889999999986 3333222 211112 23677777777776654
No 48
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.46 E-value=1.3e+02 Score=21.82 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=0.0
Q ss_pred CceeEEEcCCCCeeeeccCCCCeEeCCCCCcceeeccCCCCCCCCCC
Q 026941 137 NQFAHIICGHCRTTLMYPHGAPSVKCAVCQYVTNVNMANARVPLPAN 183 (230)
Q Consensus 137 ~q~a~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~V~~~n~R~~~p~~ 183 (230)
.+...+.|..|...-..+..--..+|+.|+.-+--.....+.|...+
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~~~~~ 79 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLDQQ 79 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCCCCCC
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCCCCCC
No 49
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=23.39 E-value=17 Score=26.36 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=0.0
Q ss_pred eecCCCCcccccC
Q 026941 83 VCCALCNTITSVP 95 (230)
Q Consensus 83 VrCa~C~tVt~Vp 95 (230)
++|+.|++++..+
T Consensus 3 ~~~~~~~~~~~~~ 15 (140)
T 1v98_A 3 VTCPKCGAKNRLG 15 (140)
T ss_dssp -------------
T ss_pred eEcccccccccCC
Confidence 4555555555554
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.34 E-value=41 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.1
Q ss_pred eeEEEeCCcceeEEeecCCCeEeCCCCCccee
Q 026941 101 MAQLICGGCRTLLMYTRGATSVRCSCCHTVNL 132 (230)
Q Consensus 101 ~~qLvCggCr~lL~YP~GA~sVrC~~C~tVn~ 132 (230)
...-.|..|...+++..++....|+.|..+-.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 45678989998899999998899998887644
No 51
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.93 E-value=75 Score=28.42 Aligned_cols=72 Identities=24% Similarity=0.498 Sum_probs=42.4
Q ss_pred CeeecCCCCcccccCCCCCceeEEEeCCcceeEEeecCCCeEeCCCCCcceecCCCCceeEEEcCCCCee--eecc----
Q 026941 81 TNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPAPNQFAHIICGHCRTT--LMYP---- 154 (230)
Q Consensus 81 ~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~GA~sVrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~--LmyP---- 154 (230)
..-.|+.|.+...+ +.+.=+| -..|.....|+.|.+--. +.++.|.+|... |-|-
T Consensus 181 ~~~~CPvCGs~P~~-------s~l~~~g------~~~G~R~l~Cs~C~t~W~------~~R~~C~~Cg~~~~l~y~~~e~ 241 (309)
T 2fiy_A 181 SRTLCPACGSPPMA-------GMIRQGG------KETGLRYLSCSLCACEWH------YVRIKCSHCEESKHLAYLSLEH 241 (309)
T ss_dssp TCSSCTTTCCCEEE-------EEEEC----------CCEEEEEETTTCCEEE------CCTTSCSSSCCCSCCEEECCCC
T ss_pred cCCCCCCCCCcCce-------eEEeecC------CCCCcEEEEeCCCCCEEe------ecCcCCcCCCCCCCeeEEEecC
Confidence 34689999775543 3222111 236778889999988764 346678888652 3331
Q ss_pred -------CCCCeEeCCCCCcceee
Q 026941 155 -------HGAPSVKCAVCQYVTNV 171 (230)
Q Consensus 155 -------~GA~sVrCa~C~~VT~V 171 (230)
.+.+.-.|..|++---+
T Consensus 242 ~~~~~~~~~~r~e~C~~C~~YlK~ 265 (309)
T 2fiy_A 242 DGQPAEKAVLRAETCPSCQGYLKQ 265 (309)
T ss_dssp -CCCSTTCSEEEEEETTTTEEEEE
T ss_pred ccccCCCcceEEEEcccccchHhh
Confidence 22356778888865444
No 52
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.74 E-value=82 Score=26.84 Aligned_cols=39 Identities=21% Similarity=0.629 Sum_probs=20.8
Q ss_pred EeCCCCCcceecCCCCceeEEEcCCCCeeeecc------CCCCeEeCCCCCc
Q 026941 122 VRCSCCHTVNLAPAPNQFAHIICGHCRTTLMYP------HGAPSVKCAVCQY 167 (230)
Q Consensus 122 VrC~~C~tVn~Vp~~~q~a~V~Cg~Crt~LmyP------~GA~sVrCa~C~~ 167 (230)
-.|..|+.+-.. -..|++|...+... ..-...+||.|+.
T Consensus 181 ~~C~iC~~iv~~-------g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 181 KICNICHSLLIQ-------GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CBCTTTCSBCSS-------CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CcCcchhhHHhC-------CcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 345555555331 15566666665544 2223557888876
No 53
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=21.27 E-value=64 Score=20.56 Aligned_cols=25 Identities=24% Similarity=0.728 Sum_probs=18.9
Q ss_pred EEEcCCCCeeeeccCCCCeEeCCCCCccee
Q 026941 141 HIICGHCRTTLMYPHGAPSVKCAVCQYVTN 170 (230)
Q Consensus 141 ~V~Cg~Crt~LmyP~GA~sVrCa~C~~VT~ 170 (230)
-..|..|+..|. +.++|..|...-.
T Consensus 14 pt~C~~C~~~l~-----qG~~C~~C~~~~H 38 (52)
T 1faq_A 14 LAFCDICQKFLL-----NGFRCQTCGYKFH 38 (52)
T ss_dssp CEECTTSSSEEC-----SEEECTTTTCCBC
T ss_pred CcCCCCcccccc-----cCCEeCCCCCeEC
Confidence 367889988764 6889999987544
No 54
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.79 E-value=46 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEeCCcceeEEeecCCCeEeCCCCCcceecCCC
Q 026941 104 LICGGCRTLLMYTRGATSVRCSCCHTVNLAPAP 136 (230)
Q Consensus 104 LvCggCr~lL~YP~GA~sVrC~~C~tVn~Vp~~ 136 (230)
|+|.-|+.-|.|-.......|+.|+..-.|..+
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCCC
No 55
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=20.77 E-value=21 Score=31.70 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=0.0
Q ss_pred ccceeeccccceeeee--cCCCCeeecCCCCcccccCCCCCceeEEEeCCcceeEEeec
Q 026941 61 MQSQLVCSGCRSVLLY--PRGATNVCCALCNTITSVPIPGMEMAQLICGGCRTLLMYTR 117 (230)
Q Consensus 61 mqsQlvC~gCr~lL~Y--P~GA~~VrCa~C~tVt~Vpp~~~q~~qLvCggCr~lL~YP~ 117 (230)
|..++.|.||-..|.+ |..+..+ |.+.-+...+.|..|..+.-|-.
T Consensus 1 ~~~~~~C~gcG~~lq~~~~~~~gy~-----------p~~~~~~~~~~C~Rc~~l~hy~~ 48 (368)
T 3h2y_A 1 MTETIKCIGCGVEIQTEDKNEVGYA-----------PASSLEKEQVICQRCFRLKHYNE 48 (368)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCceeCCCcceeEcCCCCCCCCC-----------ChHHccCCCcEEhhhhhhhccCc
Confidence 4446789999999976 3222222 22222234667777766666544
No 56
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=78 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=14.2
Q ss_pred CCCCCCceEEEEeC-CCCccC
Q 026941 194 LPSTSMTQTVVVEN-PMSVDE 213 (230)
Q Consensus 194 ~~~~~~~qtVvVEn-P~tvde 213 (230)
.+...+..+|+|.| |..++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~ 29 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATE 29 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCH
T ss_pred ccCCCCCCEEEEeCCCCCCCH
Confidence 34445688999999 766664
No 57
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=66 Score=21.24 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=14.7
Q ss_pred CCCCCCceEEEEeC-CCCccCC
Q 026941 194 LPSTSMTQTVVVEN-PMSVDES 214 (230)
Q Consensus 194 ~~~~~~~qtVvVEn-P~tvde~ 214 (230)
++...+..+|+|.| |..++++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~ 27 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITET 27 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHH
T ss_pred CCCCCCccEEEEcCCCCCCCHH
Confidence 34445678999999 7676654
No 58
>3gnf_B MVP, major vault protein; beta sheets, phosphoprotein, ribonucleoprotein, structural P; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
Probab=20.11 E-value=53 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCCceEEEEeCCCCccCCCcee
Q 026941 197 TSMTQTVVVENPMSVDESGKLV 218 (230)
Q Consensus 197 ~~~~qtVvVEnP~tvde~GklV 218 (230)
-++.+-.+||||...|++|+.|
T Consensus 57 vpp~~YC~V~NPv~r~~~g~~~ 78 (387)
T 3gnf_B 57 VPPRHYCIVANPVSRDAQSSVL 78 (387)
T ss_dssp ECTTEEEEEESCBCBCTTSCBC
T ss_pred cCCCCEEEEeCCeeeCCCCCEe
Confidence 3668999999999999999865
No 59
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=20.08 E-value=69 Score=21.53 Aligned_cols=24 Identities=21% Similarity=0.627 Sum_probs=17.3
Q ss_pred EEcCCCCeeeeccCCCCeEeCCCCCcce
Q 026941 142 IICGHCRTTLMYPHGAPSVKCAVCQYVT 169 (230)
Q Consensus 142 V~Cg~Crt~LmyP~GA~sVrCa~C~~VT 169 (230)
..|..|...| +.+.++|..|...-
T Consensus 23 t~C~~C~~~i----~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 23 GWCDLCGREV----LRQALRCANCKFTC 46 (59)
T ss_dssp EECTTTCSEE----CSCCEECTTTSCEE
T ss_pred eEchhcchhh----hhCccEeCCCCCeE
Confidence 5688887777 56778888887643
Done!