BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026942
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
Synthetase
pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
Synthetase
Length = 313
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 7/235 (2%)
Query: 2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHH 56
GY V+FLYR + PY P +L + + + +E A+R +
Sbjct: 79 GYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ 138
Query: 57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
A A G L + FTT+ +YL +LQ A + LGP +MFYLAAAVSDFYVP M EHKI
Sbjct: 139 EAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKI 198
Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
+S GPL + + VPK+LS L K+WAP AF ISFKLETD I++ +A A + Y VV
Sbjct: 199 ESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVV 258
Query: 177 ANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
AN L SR+ V++VT + K+ + ++ ++E+ + L RH+ +I D N
Sbjct: 259 ANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 313
>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
Length = 232
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 127 LLQVPKMLSVLRKEWAPMAFCISFKLETD-AEILLEKADMARK---KYGMHAVVANEL 180
L + PK++S L KEW P I FKL D E L D+ARK K ++AN+L
Sbjct: 138 LKKTPKIIS-LVKEWNPTIHLIGFKLLVDVTEDHL--VDIARKSLIKNQADLIIANDL 192
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 24 DAFLECFEVTEESAVQVCQPYSE-AVKRAIRDHHAAVAGGLLLKLP---FTTIFE 74
D F + +TEES ++ P++E A KR +R HH + G LK P F I+E
Sbjct: 14 DVFSDRVLLTEESPIRKLVPFAEXAKKRGVRIHHLNI-GQPDLKTPEVFFERIYE 67
>pdb|2PW9|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|C Chain C, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
pdb|2PW9|D Chain D, Crystal Structure Of A Putative Formate Dehydrogenase
Accessory Protein From Desulfotalea Psychrophila
Length = 268
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 21/109 (19%)
Query: 116 IQSGSGPLDMQLLQVPKMLSVLRKEWAPMA-FCISF-KLETDAEILLEKADMARKKYGMH 173
I SG G ++PK +L E+AP+A +C+ F ++++ L + + + + +H
Sbjct: 103 ITSGCGGTG----KIPK--EMLEGEFAPLADYCLPFAEIKSFIREALHSSPLGPQTHCVH 156
Query: 174 AVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHS 222
+ NNG++ VY + + V+K L +L+ R S
Sbjct: 157 GCG-------------LWNNGRLQVYHEDVGRHNAVDKVLGSILLGRAS 192
>pdb|1ZUJ|A Chain A, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|B Chain B, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|C Chain C, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
pdb|1ZUJ|D Chain D, The Crystal Structure Of The Lactococcus Lactis Mg1363
Dpsa Protein
Length = 179
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 38 VQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQ 80
+ + + Y VK++ DHH AG +L + +E + ++Q
Sbjct: 4 LSIDEKYEAEVKKSEIDHHKPTAGAMLSHVLSNIFYEKISLMQ 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,222,903
Number of Sequences: 62578
Number of extensions: 216708
Number of successful extensions: 547
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)