BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026942
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 308 bits (788), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 184/229 (80%)
Query: 2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
GYAVIFLYRRGTC+PYC LPDD FLECFE + +QV +S AVK A+ D AAVA
Sbjct: 89 GYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQVHGSHSGAVKMAVMDQQAAVAE 148
Query: 62 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
G LLKLPF+TI+EYLQML++IA + +GPCSMFYLAAAVSDFYVPW SM EHKI+SGSG
Sbjct: 149 GRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSG 208
Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
PLD++L QVPKMLS+LR WAP AFCISFKLETD++ILLEKA A +KY +HAVVANELL
Sbjct: 209 PLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELL 268
Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 230
+RKE+VVVV+++G + V RD +S VE L +LLVDRHS YIK+S T
Sbjct: 269 TRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/229 (66%), Positives = 188/229 (82%)
Query: 2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 61
GYAVIFLYRRGTC+PYC SLPDD FLECFE ++++ +QV + EAVK A+ D AVA
Sbjct: 81 GYAVIFLYRRGTCQPYCRSLPDDPFLECFEFSDKTNIQVHTSHLEAVKMAVMDQQTAVAE 140
Query: 62 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG 121
G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAVSDFYVPWKSM EHKI+SGSG
Sbjct: 141 GSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAVSDFYVPWKSMTEHKIESGSG 200
Query: 122 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 181
PLD++L QVPKMLSVLR WAP AFCISFKLETD++IL+EKA A +KY +HAVVANEL
Sbjct: 201 PLDIRLAQVPKMLSVLRSNWAPKAFCISFKLETDSKILMEKATKALRKYKVHAVVANELS 260
Query: 182 SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 230
+RKE+VVVV+++G + V R+ +S VE L +L+VDRHS YIK+S+
Sbjct: 261 TRKEEVVVVSSSGNVVVRRECDKPESFVEDNLIRLIVDRHSTYIKESHN 309
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 171 bits (433), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 131/235 (55%), Gaps = 7/235 (2%)
Query: 2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHH 56
GY V+FLYR + PY P +L + + + +E A+R +
Sbjct: 77 GYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQ 136
Query: 57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
A A G L + FTT+ +YL +LQ A + LGP +MFYLAAAVSDFYVP M EHKI
Sbjct: 137 EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKI 196
Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
QS GPL + + VPK+LS L K+WAP AF ISFKLETD I++ +A A + Y VV
Sbjct: 197 QSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVV 256
Query: 177 ANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 229
AN L SR+ V +VT + K+ + ++ ++E+ + L RH+ +I D N
Sbjct: 257 ANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 311
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 130/235 (55%), Gaps = 7/235 (2%)
Query: 2 GYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHH 56
GY V+FLYR + PY P A+L + + +++ + A++ +
Sbjct: 77 GYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQ 136
Query: 57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
A A G L + FTT+ +YL +LQ A++ LG +MFYLAAAVSDFY+P M EHKI
Sbjct: 137 EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKI 196
Query: 117 QSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVV 176
S GPL + + VPKMLS L K+WAP AF +SFKLETD +I++ +A A + Y VV
Sbjct: 197 HSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVV 256
Query: 177 ANELLSRKEQVVVVTNNGKIPVYRDKTSSDSD--VEKPLTKLLVDRHSVYIKDSN 229
AN L S K V++VT + + + + +E+ + L RH+ +I D N
Sbjct: 257 ANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN 311
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 2 GYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAV 59
GY+VIFLYR + P+ P E ++E V Q + V A+ +
Sbjct: 80 GYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYT 139
Query: 60 AGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG 119
L+ +P+TT+ EYL L+ IA + + ++FYLAAAVSDF++P K ++EHKIQSG
Sbjct: 140 KHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSG 199
Query: 120 SGP--LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVA 177
SG L++++ VPK L L WAP A ISFKLETD IL++KA +A ++Y V+A
Sbjct: 200 SGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIA 259
Query: 178 NELLSRKEQVVVVTN 192
N L +RK V VT+
Sbjct: 260 NLLSTRKRSVAFVTS 274
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 31/253 (12%)
Query: 2 GYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHH 56
GY+VIFL+R + PY S + FL+ + S ++ ++E V + + D +
Sbjct: 115 GYSVIFLHREFSLTPYNRSFSHSINTLFLDYID----SEGKIKPEFAENVLKNKKLYDKY 170
Query: 57 AAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKI 116
LLL LPFTT+ +YL L+ IA + G C +FYLAAAVSDF+VP+ + +HKI
Sbjct: 171 MEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKI 227
Query: 117 QSGS-------------------GPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAE 157
QSG G L + L VPK L L + WA A +SFKLETD
Sbjct: 228 QSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDES 287
Query: 158 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLL 217
+LL K A +Y V+ N L +R +QV+ V+ + + +E+ + +
Sbjct: 288 MLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEV 347
Query: 218 VDRHSVYIKDSNT 230
+ RH ++ S T
Sbjct: 348 IARHDKWVAHSKT 360
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 98 AAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLE--TD 155
+AA+SDF V E K+ S L ++L + PK+L LR+ + I FK E D
Sbjct: 280 SAAISDFTVES---FEGKLSSEE-ELILKLKRNPKVLEELRRIYKDKVI-IGFKAEYNLD 334
Query: 156 AEILLEKADMARKKYGMHAVVANEL 180
+ L+ +A KY ++ ++AN+L
Sbjct: 335 EKELINRAKERLNKYNLNMIIANDL 359
>sp|P53088|CTU1_YEAST Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCS6 PE=1 SV=3
Length = 359
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 127 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 186
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEIH-----------------NTIVANNLFQRGEK 69
Query: 187 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|A6ZTX8|CTU1_YEAS7 Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=NCS6 PE=3 SV=1
Length = 359
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 127 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 186
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEIH-----------------NTIVANNLFQRGEK 69
Query: 187 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|B3LHQ7|CTU1_YEAS1 Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=NCS6 PE=3 SV=1
Length = 359
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 127 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 186
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEIH-----------------NTIVANNLFQRGEK 69
Query: 187 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 226
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|Q54LF0|SIR2B_DICDI NAD-dependent deacetylase sir2B OS=Dictyostelium discoideum
GN=sir2B PE=2 SV=1
Length = 778
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 76 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQV----- 130
+ +L+ I S S FYL A+ + Y P K++ E + + P + L +
Sbjct: 2 INILKDILYKSYSYLAFPFFYLGWAIKNSYQPNKTIKEEESKPPKYPKEWSDLFIHSYNN 61
Query: 131 --PKMLSVLRKE-----------WAPMAFCISFKLETDAEILLEK-ADMARKKY-GMHAV 175
K+L +++KE W P+ +S K +LLE+ +++ K+Y H
Sbjct: 62 EHEKVLEIIQKEPNSINSVDSLNWTPLHVAVSNKSIEVVTLLLERNIEISIKRYTAFHIA 121
Query: 176 VANELLSRKEQVVVVTN--NGKI 196
N L+ E+++ + NG I
Sbjct: 122 ACNGDLNIIEKMITMNRVPNGNI 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,969,163
Number of Sequences: 539616
Number of extensions: 2804885
Number of successful extensions: 6721
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6707
Number of HSP's gapped (non-prelim): 11
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)