Your job contains 1 sequence.
>026943
MMTWASYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERR
RRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMPQMNMMMP
LGMQQQLQMSLLARMGMGVGLGTGMGMLDMNTMAAAAATARTAPQSLPPPIYSPAASVTL
PDPYYAFLAQSMNVELYNKMAALFRQQVKQNTIQQAACSPSMQSNHMQGD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026943
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 274 1.3e-36 2
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 281 2.6e-30 2
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 229 7.4e-19 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 188 1.0e-18 2
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 213 4.6e-18 2
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 218 5.8e-18 1
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 222 9.4e-18 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 223 1.1e-17 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 213 2.0e-17 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 221 2.2e-17 1
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 215 5.0e-17 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 207 8.6e-17 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 206 4.5e-16 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 200 4.7e-16 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 200 2.0e-15 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 171 1.1e-14 2
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 192 1.8e-14 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 154 3.3e-14 2
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 186 1.3e-13 1
TAIR|locus:2041369 - symbol:PIL1 "phytochrome interacting... 179 4.1e-13 1
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 168 4.3e-12 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 161 1.8e-11 1
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 139 2.6e-11 2
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 154 9.0e-11 1
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 154 9.3e-11 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 133 1.9e-10 2
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 155 2.4e-10 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 149 3.6e-10 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 132 4.1e-10 2
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 151 4.3e-10 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 146 5.0e-10 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 152 5.5e-10 1
TAIR|locus:2098008 - symbol:PIL2 "phytochrome interacting... 149 5.8e-10 1
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 148 6.1e-10 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 147 6.4e-10 1
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 145 6.8e-10 1
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 150 7.3e-10 1
TAIR|locus:2028804 - symbol:CIB5 "AT1G26260" species:3702... 148 8.7e-10 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 141 1.7e-09 1
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 143 2.7e-09 1
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 141 2.8e-09 1
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 144 4.5e-09 1
TAIR|locus:2085964 - symbol:BHLH32 "AT3G25710" species:37... 140 5.0e-09 1
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 140 5.0e-09 1
UNIPROTKB|Q6ESL3 - symbol:OJ1294_G06.8 "DNA binding prote... 140 5.6e-09 1
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 140 5.8e-09 1
UNIPROTKB|Q7F7Z2 - symbol:Os01g0159800 "ESTs C26093(C1162... 136 6.3e-09 1
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 138 7.3e-09 1
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 135 7.8e-09 1
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 138 9.4e-09 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 136 1.0e-08 1
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 136 1.1e-08 1
UNIPROTKB|Q69TX2 - symbol:P0021C04.13 "BHLH protein-like"... 130 1.3e-08 1
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 138 1.6e-08 1
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 135 1.8e-08 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 137 2.1e-08 1
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 138 2.1e-08 1
UNIPROTKB|Q69MD0 - symbol:OSJNBb0019B14.23 "BHLH-like pro... 128 2.5e-08 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 128 3.0e-08 1
TAIR|locus:2130619 - symbol:AT4G16430 "AT4G16430" species... 135 3.1e-08 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 129 3.4e-08 1
TAIR|locus:2141055 - symbol:MYC4 "AT4G17880" species:3702... 136 3.5e-08 1
TAIR|locus:2035609 - symbol:MYC2 "AT1G32640" species:3702... 136 3.8e-08 1
TAIR|locus:2179122 - symbol:APTX "APRATAXIN-like" species... 138 3.8e-08 1
TAIR|locus:2204898 - symbol:HFR1 "AT1G02340" species:3702... 130 4.3e-08 1
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 133 4.4e-08 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 136 5.1e-08 1
TAIR|locus:2178555 - symbol:MYC3 "AT5G46760" species:3702... 134 5.7e-08 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 134 7.2e-08 1
UNIPROTKB|Q75IR0 - symbol:OSJNBb0099P06.13 "Putative unch... 127 7.6e-08 1
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 131 8.1e-08 1
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 127 8.7e-08 1
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 130 9.6e-08 1
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 128 1.0e-07 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 125 1.3e-07 1
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 128 1.4e-07 1
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 127 2.4e-07 1
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 117 2.9e-07 1
UNIPROTKB|Q657D1 - symbol:P0697C12.40 "BHLH transcription... 126 3.1e-07 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 125 3.5e-07 1
UNIPROTKB|Q6Z9R3 - symbol:P0461F06.33 "BHLH protein famil... 118 5.3e-07 2
TAIR|locus:2134583 - symbol:AT4G00870 "AT4G00870" species... 125 6.4e-07 1
TAIR|locus:2046198 - symbol:FRU "AT2G28160" species:3702 ... 124 7.2e-07 1
UNIPROTKB|Q6Z339 - symbol:B1121A12.20 "Os02g0726700 prote... 124 8.4e-07 1
UNIPROTKB|Q6YUS3 - symbol:OSJNBb0088N06.15 "BHLH protein-... 125 9.6e-07 1
TAIR|locus:2123954 - symbol:AT4G29930 "AT4G29930" species... 123 9.8e-07 1
UNIPROTKB|Q9FTQ1 - symbol:P0665D10.21 "DNA binding protei... 123 1.0e-06 1
ZFIN|ZDB-GENE-000509-2 - symbol:arntl2 "aryl hydrocarbon ... 125 1.2e-06 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 120 1.3e-06 1
UNIPROTKB|Q6ZJC8 - symbol:OJ1666_A04.16 "Os08g0477900 pro... 121 1.4e-06 1
UNIPROTKB|Q2R3F6 - symbol:Os11g0523700 "Helix-loop-helix ... 124 1.7e-06 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 122 1.8e-06 1
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 123 2.1e-06 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 123 2.1e-06 1
UNIPROTKB|Q7XT55 - symbol:OSJNBa0084K20.3 "OSJNBa0076N16.... 112 2.8e-06 2
TAIR|locus:2199307 - symbol:AT1G68240 species:3702 "Arabi... 117 3.0e-06 1
TAIR|locus:2126856 - symbol:IND "AT4G00120" species:3702 ... 118 3.2e-06 1
TAIR|locus:2089418 - symbol:AT3G21330 "AT3G21330" species... 122 3.2e-06 1
TAIR|locus:2205455 - symbol:BIM2 "AT1G69010" species:3702... 121 3.4e-06 1
TAIR|locus:2074865 - symbol:HEC2 "AT3G50330" species:3702... 119 3.7e-06 1
WARNING: Descriptions of 76 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 274 (101.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 61/105 (58%), Positives = 80/105 (76%)
Query: 2 MTWASYESLKSLKT-KTTDEDSASHGRSENQD---EDHETK--TGRSHSSKRRRTAAVHN 55
M+WAS+ES +SLKT +T D D G SE QD ++ ET+ GRS+ +R R AA+HN
Sbjct: 115 MSWASFESGRSLKTARTGDRDYFRSG-SETQDTEGDEQETRGEAGRSNG-RRGRAAAIHN 172
Query: 56 QSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
+SERRRRDRINQ+M+ LQKL+P ASK DK S+LD+VI++LKQL+A
Sbjct: 173 ESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQA 217
Score = 136 (52.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 35/77 (45%), Positives = 43/77 (55%)
Query: 164 PQSLPPPIYSP---------AASVTLPDPYYAFLAQSMNVELYNKMAA-LFRQQVKQNTI 213
P PPP+ P +S TL DPY AF AQ+MN++LYNKMAA ++RQQ Q T
Sbjct: 291 PPPPPPPMMVPPMGNRDCTNGSSATLSDPYSAFFAQTMNMDLYNKMAAAIYRQQSDQTTK 350
Query: 214 QQAACSPSMQSNHMQGD 230
PS SNH + D
Sbjct: 351 VNIGM-PSSSSNHEKRD 366
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 281 (104.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 57/93 (61%), Positives = 71/93 (76%)
Query: 9 SLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSH-SSKRRRTAAVHNQSERRRRDRINQ 67
S+ S D DS H R + +DE+ + G+S S+KR R AA+HNQSER+RRD+INQ
Sbjct: 172 SMGSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQ 231
Query: 68 KMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
+MK LQKLVPN+SKTDKASMLDEVI+YLKQL+A
Sbjct: 232 RMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQA 264
Score = 69 (29.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 177 SVTLPDPYYAFLA---QSMNVELYNKMAALFRQQVKQ 210
S +PDP AFLA Q +E Y++MA L++Q +Q
Sbjct: 355 SPLIPDPMSAFLACSTQPTTMEAYSRMATLYQQMQQQ 391
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 229 (85.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 54/100 (54%), Positives = 67/100 (67%)
Query: 3 TWASYESLKSLKTKTTDEDSASH-GRSENQDEDHETKTGRSH--SSKRRRTAAVHNQSER 59
T S S+ + +T + D S G DE +K+G S SSKR R A VHN SE+
Sbjct: 148 TRVSSSSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEK 207
Query: 60 RRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RRR RIN+KMKALQ L+PN++KTDKASMLDE I+YLKQL+
Sbjct: 208 RRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQ 247
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 188 (71.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 37/45 (82%), Positives = 42/45 (93%)
Query: 56 QSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
++ +RRDRINQKMK LQKLVPN+SKTDKASMLDEVIDYLKQL+A
Sbjct: 8 KNNHKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQA 52
Score = 51 (23.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 169 PPIYSPAASVTLPDPYYAFLA--------QSMN-VELYNKMAALFRQQVKQNTIQQAACS 219
PP P + T D + AFLA Q N +E YN+M A++++ Q QQ S
Sbjct: 131 PP--QPTGAAT-SDAFSAFLASQAAQQNAQQPNGMEAYNRMMAMYQKLNHQQQQQQDQPS 187
Query: 220 PSMQ 223
S Q
Sbjct: 188 NSRQ 191
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 213 (80.0 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 44/86 (51%), Positives = 63/86 (73%)
Query: 16 KTTDEDSASHGRSENQDEDHETKTGR--SHSSKRRRTAAVHNQSERRRRDRINQKMKALQ 73
K + ++ + +E++ E ETK R + S+KR R A VHN SER+RRDRIN++MKALQ
Sbjct: 251 KRKEREATTTDETESRSE--ETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQ 308
Query: 74 KLVPNASKTDKASMLDEVIDYLKQLK 99
+L+P +K+DKASMLDE I+Y+K L+
Sbjct: 309 ELIPRCNKSDKASMLDEAIEYMKSLQ 334
Score = 34 (17.0 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 165 QSLPPPIYSP 174
Q +PPP + P
Sbjct: 369 QPIPPPSFMP 378
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 47/79 (59%), Positives = 57/79 (72%)
Query: 21 DSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNAS 80
DS + G SE + G S SKR R A VHN SE+RRR +IN+KMKALQ L+PN++
Sbjct: 76 DSEAGGSSEPEAAAGARPRGGS-GSKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSN 134
Query: 81 KTDKASMLDEVIDYLKQLK 99
KTDKASMLDE I+YLKQL+
Sbjct: 135 KTDKASMLDEAIEYLKQLQ 153
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 222 (83.2 bits), Expect = 9.4e-18, P = 9.4e-18
Identities = 47/85 (55%), Positives = 62/85 (72%)
Query: 19 DEDSASH---GRSENQDEDHETKTG-RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQK 74
D++S S G + D+ K+ RS S++R R A VHN SERRRRDRIN++MKALQ+
Sbjct: 222 DQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQE 281
Query: 75 LVPNASKTDKASMLDEVIDYLKQLK 99
L+P+ S+TDKAS+LDE IDYLK L+
Sbjct: 282 LIPHCSRTDKASILDEAIDYLKSLQ 306
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 223 (83.6 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 50/93 (53%), Positives = 64/93 (68%)
Query: 12 SLKTKTTD-EDSASHGRS-ENQDEDHETKTGRSHS---SKRRRTAAVHNQSERRRRDRIN 66
SLK K ++ +D H E + D + G S + SKR R+A VHN SERRRRDRIN
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 67 QKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
+KM+ALQ+L+PN +K DKASMLDE I+YLK L+
Sbjct: 361 EKMRALQELIPNCNKVDKASMLDEAIEYLKSLQ 393
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 46/80 (57%), Positives = 57/80 (71%)
Query: 20 EDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA 79
E + G SE++ T+ R KR R A VHN SE+RRR RIN+KMKALQ L+PN+
Sbjct: 7 ESEEALGSSESEQP---TRPARPRG-KRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNS 62
Query: 80 SKTDKASMLDEVIDYLKQLK 99
SKTDKASMLD+ I+YLKQL+
Sbjct: 63 SKTDKASMLDDAIEYLKQLQ 82
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 221 (82.9 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 48/86 (55%), Positives = 60/86 (69%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQ 73
K + E SAS + DE + + S+KR RTA VHN SERRRRDRIN+KM+ALQ
Sbjct: 278 KCQAQAECSASQD-DDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQ 336
Query: 74 KLVPNASKTDKASMLDEVIDYLKQLK 99
+L+PN +K DKASMLDE I+YLK L+
Sbjct: 337 ELIPNCNKIDKASMLDEAIEYLKTLQ 362
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 215 (80.7 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RS S++R R A VHN SERRRRDRIN++MKALQ+L+P+ SKTDKAS+LDE IDYLK L+
Sbjct: 249 RSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQ 307
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 45/83 (54%), Positives = 60/83 (72%)
Query: 22 SASHGRSEN-QDE---DHETKTGRSHSS-KRRRTAAVHNQSERRRRDRINQKMKALQKLV 76
S +G SE QD+ +H+ + +S KR A HN SE++RR +IN+KMKALQKL+
Sbjct: 61 SVGYGVSETGQDKYAFEHKRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLI 120
Query: 77 PNASKTDKASMLDEVIDYLKQLK 99
PN++KTDKASMLDE I+YLKQL+
Sbjct: 121 PNSNKTDKASMLDEAIEYLKQLQ 143
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 206 (77.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 36 ETKTGRSHSSKRR-RTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDY 94
ET+ + ++KRR R A VHN SERRRRDRIN+K++ALQ+LVP+ +KTDKAS+LDE I+Y
Sbjct: 214 ETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEY 273
Query: 95 LKQLK 99
LK L+
Sbjct: 274 LKSLQ 278
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R ++R R+A HN SERRRRDRIN+K+KALQ+L+PN +KTDK SMLDE IDYLK L+
Sbjct: 5 RPTPTRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQ 63
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 200 (75.5 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGR-SHSSKRRRTAAVHNQSERRRRDRINQKMKAL 72
+T TDE R E E+ T+ R S SSKR R A +H SERRRR +IN+ MKAL
Sbjct: 242 ETDITDERKRKT-REETNVENQGTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKAL 300
Query: 73 QKLVPNASKTDKASMLDEVIDYLKQLKA 100
Q+L+P +KTD++SMLD+VI+Y+K L++
Sbjct: 301 QELLPRCTKTDRSSMLDDVIEYVKSLQS 328
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 171 (65.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 27 RSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKAS 86
RS + + E G S S KR R A +HN +ERRRR++IN++MK LQ+L+P +K+ K S
Sbjct: 129 RSAPRIQGTEEARG-STSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVS 187
Query: 87 MLDEVIDYLKQLK 99
ML++VI+Y+K L+
Sbjct: 188 MLEDVIEYVKSLE 200
Score = 36 (17.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 165 QSLPPPI 171
QSLPPP+
Sbjct: 284 QSLPPPL 290
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 192 (72.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 38/88 (43%), Positives = 60/88 (68%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGR-SHSSKRRRTAAVHNQSERRRRDRINQKMKAL 72
+T+ A+ + + ++E H T+ R S S KR RTA +HN +ERRRR++IN+KMK L
Sbjct: 219 ETEPVQIQPATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTL 278
Query: 73 QKLVPNASKTDKASMLDEVIDYLKQLKA 100
Q+L+P +K+ K S LD+ I+Y+K L++
Sbjct: 279 QQLIPRCNKSTKVSTLDDAIEYVKSLQS 306
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 154 (59.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 29/93 (31%), Positives = 57/93 (61%)
Query: 8 ESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQ 67
+++ ++ + T ++D AS E + + + + +S+ R A HN +E+RRR +I +
Sbjct: 41 DNMPAVASPTMNKDEASDDSGERKKKKKKASSAAGKASRHRHAAGAHNLTEKRRRFKITE 100
Query: 68 KMKALQKLVPNA-SKTDKASMLDEVIDYLKQLK 99
+ + LQ+LVP +K+++AS LD+ I Y+K L+
Sbjct: 101 RFRTLQRLVPGCDNKSNQASTLDQTIQYMKSLQ 133
Score = 46 (21.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 164 PQSLPPPIYSPAASVTL-PDPYYAFLA 189
P + PPP+ AA VT+ P P LA
Sbjct: 163 PPAPPPPVAGAAAPVTMAPMPAGMVLA 189
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQ 73
+TK T++ +E Q E G S S KR R A +HN SERRRR+RIN++MK LQ
Sbjct: 325 ETKITEDKKREETIAEIQGT--EEAHG-STSRKRSRAADMHNLSERRRRERINERMKTLQ 381
Query: 74 KLVPNASKTDKASMLDEVIDYLKQLK 99
+L+P KTDK SML++VI+Y+K L+
Sbjct: 382 ELLPRCRKTDKVSMLEDVIEYVKSLQ 407
>TAIR|locus:2041369 [details] [associations]
symbol:PIL1 "phytochrome interacting factor 3-like 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009641 "shade
avoidance" evidence=IEP] [GO:0010017 "red or far-red light
signaling pathway" evidence=IEP;IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC004411 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0010017 GO:GO:0009641 HOGENOM:HOG000115543
ProtClustDB:CLSN2680935 EMBL:AB090873 EMBL:AY219127 EMBL:AY954840
IPI:IPI00545843 PIR:T02190 RefSeq:NP_182220.2 UniGene:At.36425
ProteinModelPortal:Q8L5W8 SMR:Q8L5W8 IntAct:Q8L5W8 STRING:Q8L5W8
PRIDE:Q8L5W8 EnsemblPlants:AT2G46970.1 GeneID:819311
KEGG:ath:AT2G46970 TAIR:At2g46970 eggNOG:NOG291407
InParanoid:Q8L5W8 OMA:MELVCEN PhylomeDB:Q8L5W8
Genevestigator:Q8L5W8 Uniprot:Q8L5W8
Length = 416
Score = 179 (68.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 41/95 (43%), Positives = 59/95 (62%)
Query: 12 SLKTKTTD--EDSASHGRSENQDEDHETKTG-----RSHSSKRRRTAAVHNQSERRRRDR 64
SLK K D E+ +++ + + DE + KT R +KR+R+ VH ER+RRD
Sbjct: 185 SLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDE 244
Query: 65 INQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
N+KM+ALQ L+PN K DKAS+LDE I Y++ L+
Sbjct: 245 FNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQ 279
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 168 (64.2 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/86 (44%), Positives = 57/86 (66%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQ 73
+T+T + SAS +++T ++R + H+ +ER RR+RI ++MKALQ
Sbjct: 111 QTQTQPQASASTATGGTVAAPPQSRT--KIRARRGQATDPHSIAERLRRERIAERMKALQ 168
Query: 74 KLVPNASKTDKASMLDEVIDYLKQLK 99
+LVPN +KTDKASMLDE+IDY+K L+
Sbjct: 169 ELVPNGNKTDKASMLDEIIDYVKFLQ 194
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR+RI ++MK+LQ+LVPN +KTDKASMLDE+IDY+K L+
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 139 (54.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 17 TTDEDSASHG-RSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQK 74
+T +S+ G RS+N++E+ E + H RR A H+ +ER RR +IN+++K LQ
Sbjct: 121 STKNNSSRRGKRSKNREEEKEREV--VHVRARRGQATDSHSIAERVRRGKINERLKCLQD 178
Query: 75 LVPNASKT-DKASMLDEVIDYLKQLK 99
+VP KT A+MLDE+I+Y++ L+
Sbjct: 179 IVPGCYKTMGMATMLDEIINYVQSLQ 204
Score = 35 (17.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 165 QSLPPPIYSPAASVTLPDPYYAFLAQSMNVELYNKMAA 202
QSL + + +T YY F +++ VE K A
Sbjct: 201 QSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQKAKA 238
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 154 (59.3 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 28/55 (50%), Positives = 45/55 (81%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR+RI ++M+ALQ+LVPN +KTD+A+MLDE++DY+K L+
Sbjct: 135 ARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLR 189
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 154 (59.3 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR+RI ++MK+LQ+LVPN +KTDKASMLDE+I+Y++ L+
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 133 (51.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 28 SENQDEDHETKTG--RSHSSKRRRT---AAVHNQSERRRRDRINQKMKALQKLVPNASKT 82
+E D+ T+T R K RR A H +E+RRR RIN+K K LQ+LVP K
Sbjct: 126 TEKMDKKLPTRTEERRRVKHKARRNPGYAETHGLTEKRRRSRINEKFKMLQRLVPGCDKC 185
Query: 83 DKASMLDEVIDYLKQLK 99
++S LD I Y+K L+
Sbjct: 186 SQSSTLDRTIHYMKSLQ 202
Score = 34 (17.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 165 QSLPPPIYSPAASVTLPDPYYAFLA 189
Q++ P + PAA + P AF A
Sbjct: 206 QAMYPTMVRPAAVYPVVQPPPAFAA 230
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 155 (59.6 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASK---TDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR+RI ++MKALQ+LVPNA+K TDKASMLDE+IDY+K L+
Sbjct: 252 ARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 149 (57.5 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 25 HGRSENQDED---HETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNAS 80
HG+ +Q H+ T R RR A H+ +ER RR+RI +++++LQ+LVP +
Sbjct: 122 HGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVN 181
Query: 81 KTDKASMLDEVIDYLKQLK 99
KTD+A+M+DE++DY+K L+
Sbjct: 182 KTDRAAMIDEIVDYVKFLR 200
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 132 (51.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 38 KTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYL 95
KT H RR A H+ +ER RR+RI+++M+ LQ+LVP +K T KA MLDE+I+Y+
Sbjct: 158 KTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYV 217
Query: 96 KQLK 99
+ L+
Sbjct: 218 QSLQ 221
Score = 38 (18.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 188 LAQSMNVELYNKMAALFRQQVKQNTIQQAACSPS 221
+A S V +N + LF +Q + QAAC+P+
Sbjct: 231 IAASNPVVNFNIVEDLFGRQ-----LSQAACNPA 259
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 151 (58.2 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 29/55 (52%), Positives = 44/55 (80%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR++I+++MK LQ LVPN++K DKASMLDE+IDY+K L+
Sbjct: 241 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 295
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 146 (56.5 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 12 SLKTKT-TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKM 69
SL+T+ TD +AS +N K H RR A H+ +ER RR++I+++M
Sbjct: 103 SLRTEAETDSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERM 162
Query: 70 KALQKLVPNASKT-DKASMLDEVIDYLKQLK 99
K LQ LVP +K KAS+LDE+I+Y++ L+
Sbjct: 163 KILQDLVPGCNKVIGKASVLDEIINYIQALQ 193
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 152 (58.6 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 29/55 (52%), Positives = 45/55 (81%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++R + H+ +ER RR++I+ +MK LQ+LVPN++KT+KASMLDE+IDY+K L+
Sbjct: 316 ARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQ 370
>TAIR|locus:2098008 [details] [associations]
symbol:PIL2 "phytochrome interacting factor 3-like 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010017 "red or far-red light signaling
pathway" evidence=IEP] [GO:0010089 "xylem development"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 GO:GO:0010017
EMBL:AL138651 EMBL:AB090874 EMBL:BT033108 IPI:IPI00525935
IPI:IPI00846835 PIR:T48001 RefSeq:NP_001078329.1 RefSeq:NP_191768.2
UniGene:At.1005 UniGene:At.50304 ProteinModelPortal:Q8L5W7
SMR:Q8L5W7 IntAct:Q8L5W7 STRING:Q8L5W7 EnsemblPlants:AT3G62090.2
GeneID:825382 KEGG:ath:AT3G62090 TAIR:At3g62090 eggNOG:NOG305930
HOGENOM:HOG000115543 InParanoid:Q8L5W7 OMA:ETNMLES PhylomeDB:Q8L5W7
ProtClustDB:CLSN2680935 Genevestigator:Q8L5W7 Uniprot:Q8L5W7
Length = 363
Score = 149 (57.5 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 17 TTDEDSASHGRSENQDEDHETKT---GRSHSS--KRRRTAAVHNQSERRRRDRINQKMKA 71
T D + + + S DE + + R+ + KR+R A +N ER +R+ IN+KM+
Sbjct: 151 TEDSEGSMYLSSSLDDESDDARPQVPARTRKALVKRKRNAEAYNSPERNQRNDINKKMRT 210
Query: 72 LQKLVPNASKTDKASMLDEVIDYLKQLK 99
LQ L+PN+ K D SMLDE I+Y+ L+
Sbjct: 211 LQNLLPNSHKDDNESMLDEAINYMTNLQ 238
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 148 (57.2 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 6 SYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDR 64
S +S+K +K K E++ S ++ E KT H RR A H+ +ER RR++
Sbjct: 135 STKSIKKMKHKAKKEENNFSNDSSKVTKELE-KTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 65 INQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
I+++MK LQ LVP K T KA MLDE+I+Y++ L+
Sbjct: 194 ISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQ 229
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 147 (56.8 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 25 HGRSENQ---DEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNAS 80
HG+ Q H+ + R RR A H+ +ER RR+RI ++++ALQ+LVP +
Sbjct: 124 HGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVN 183
Query: 81 KTDKASMLDEVIDYLKQLK 99
KTD+A+M+DE++DY+K L+
Sbjct: 184 KTDRAAMIDEIVDYVKFLR 202
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 145 (56.1 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 12 SLKTKT-TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKM 69
SL+T+ TD ++S +N K H RR A H+ +ER RR++I+++M
Sbjct: 95 SLRTEAGTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERM 154
Query: 70 KALQKLVPNASKT-DKASMLDEVIDYLKQLK 99
K LQ LVP +K KAS+LDE+I+Y++ L+
Sbjct: 155 KILQDLVPGCNKVIGKASVLDEIINYIQSLQ 185
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 150 (57.9 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 29/39 (74%), Positives = 37/39 (94%)
Query: 61 RRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RR+RI ++MKALQ+LVPNA+KTDKASMLDE+IDY+K L+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQ 290
>TAIR|locus:2028804 [details] [associations]
symbol:CIB5 "AT1G26260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0048513 "organ development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC079829 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238007
EMBL:AK117355 EMBL:BT005334 EMBL:AJ630483 EMBL:AY568655
EMBL:AF488608 IPI:IPI00529982 IPI:IPI00547855 PIR:H86388
RefSeq:NP_001031093.1 RefSeq:NP_173950.1 RefSeq:NP_973913.1
UniGene:At.41276 ProteinModelPortal:Q9C670 SMR:Q9C670 IntAct:Q9C670
STRING:Q9C670 EnsemblPlants:AT1G26260.1 EnsemblPlants:AT1G26260.2
GeneID:839167 KEGG:ath:AT1G26260 TAIR:At1g26260 eggNOG:NOG284637
InParanoid:Q9C670 OMA:ETHGYES PhylomeDB:Q9C670
ProtClustDB:CLSN2682645 Genevestigator:Q9C670 Uniprot:Q9C670
Length = 390
Score = 148 (57.2 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 8 ESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRIN 66
E K K + + +A+ SE Q D K G H RR A H+ +ER RR++I+
Sbjct: 188 EEDKKQKDEQSPTSNANKTNSEKQPSD-SLKDGYIHMRARRGQATNSHSLAERVRREKIS 246
Query: 67 QKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
++MK LQ LVP K T KA MLDE+I+Y++ L+
Sbjct: 247 ERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQ 280
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 141 (54.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 12 SLKTKTTDEDSAS--HGRSENQDEDHETKTGRSHSSKRRRT--AAVHNQS--ERRRRDRI 65
S ++ T DE + + G+S + D E + S K R T A QS R+RR++I
Sbjct: 130 SSESNTVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKI 189
Query: 66 NQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
N+++K LQ LVPN +K D ++ML+E + Y+K L+
Sbjct: 190 NERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 22 SASHGRSENQ---DEDHETKTGRSHSSKRRRTAAV-HNQSERRRRDRINQKMKALQKLVP 77
+A+ G+S+ + D K G SH R+ A H+ +ER RR++I+++MK LQ LVP
Sbjct: 151 AAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVP 210
Query: 78 NASK-TDKASMLDEVIDYLKQLK 99
SK T KA MLDE+I+Y++ L+
Sbjct: 211 GCSKVTGKALMLDEIINYVQSLQ 233
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 141 (54.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 8 ESLKSLKTKTTDEDSAS-HGRSE--NQDEDHET-KTGRSHSSKRRRTAAV-HNQSERRRR 62
E + K K DE S G+S N + E K H RR A H+ +ER RR
Sbjct: 101 EKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARR 160
Query: 63 DRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
++I++KMK LQ +VP +K T KA MLDE+I+Y++ L+
Sbjct: 161 EKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQ 198
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 144 (55.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 DEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEV 91
DE K GR ++ R H ++ER+RR+++NQ+ AL+ +VPN SK DKAS+L +
Sbjct: 375 DEKRPRKRGRKPANGREEPLN-HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDA 433
Query: 92 IDYLKQLK 99
I Y+K+L+
Sbjct: 434 ISYIKELQ 441
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 140 (54.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 25/46 (54%), Positives = 38/46 (82%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H+++ERRRR+RIN + L+ ++PN +KTDKAS+L EVI ++K+LK
Sbjct: 136 HSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELK 181
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 140 (54.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H+++ERRRR RIN + L+ L+PN +KTDKAS+L EVI+++K+LK
Sbjct: 125 HSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELK 170
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 140 (54.3 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H+++ERRRR RIN + L+ L+PN +KTDKAS+L EVI+++K+LK
Sbjct: 110 HSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELK 155
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 25/46 (54%), Positives = 38/46 (82%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H+++ERRRR+RIN + L+ ++PN +KTDKAS+L EVI ++K+LK
Sbjct: 178 HSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELK 223
>UNIPROTKB|Q7F7Z2 [details] [associations]
symbol:Os01g0159800 "ESTs C26093(C11622)" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 OMA:QPETISD ProtClustDB:CLSN2691085 EMBL:AP002539
RefSeq:NP_001042087.1 UniGene:Os.1443
EnsemblPlants:LOC_Os01g06640.1 EnsemblPlants:LOC_Os01g06640.2
GeneID:4324065 KEGG:osa:4324065 Uniprot:Q7F7Z2
Length = 258
Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 37 TKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLK 96
+ +G S+ R +H+++ERRRR+RIN + L++++P+ + DKA++L V+D +K
Sbjct: 52 SSSGSGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVK 111
Query: 97 QLK 99
LK
Sbjct: 112 DLK 114
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 138 (53.6 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 19 DEDSASHGRSENQDEDHE-TKTGRSH-SSKRRRTAAVHNQSERRRRDRINQKMKALQKLV 76
++ S S +S+ D + TK H +KR + H+ +ER RR +I+++MK LQ LV
Sbjct: 121 NQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLV 180
Query: 77 PNASK-TDKASMLDEVIDYLKQLK 99
P SK T KA MLDE+I+Y++ L+
Sbjct: 181 PGCSKITGKAVMLDEIINYVQSLQ 204
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 135 (52.6 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 26/46 (56%), Positives = 36/46 (78%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H +E+RRRDRIN + AL+KLVPN+ K DKA++L VI+ +K+LK
Sbjct: 67 HRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELK 112
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 11 KSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKM 69
+S K D+ + + +Q E+ K H RR A H+ +ER RR++I+++M
Sbjct: 174 QSQKKHKNDQSKETVNKESSQSEE-APKENYIHMRARRGQATNSHSLAERVRREKISERM 232
Query: 70 KALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
+ LQ+LVP +K T KA MLDE+I+Y++ L+
Sbjct: 233 RLLQELVPGCNKITGKAVMLDEIINYVQSLQ 263
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 136 (52.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 18 TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS--ERRRRDRINQKMKALQKL 75
+D DS+S S+ + T G+S + R AA QS R+RR+RIN+++K LQ L
Sbjct: 195 SDNDSSS---SQEVADAGATSKGKSRAG---RGAATDPQSLYARKRRERINERLKTLQNL 248
Query: 76 VPNASKTDKASMLDEVIDYLKQLK 99
VPN +K D ++ML+E + Y+K L+
Sbjct: 249 VPNGTKVDISTMLEEAVHYVKFLQ 272
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/90 (32%), Positives = 54/90 (60%)
Query: 11 KSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAV-HNQSERRRRDRINQKM 69
+S+++ + ++ ++ + + D G RRR+A + + RRRR+RIN ++
Sbjct: 177 ESMQSGSCSDNESNCSQVNRRKVDRVAGGGNGKVPARRRSATIAQSLYARRRRERINGRL 236
Query: 70 KALQKLVPNASKTDKASMLDEVIDYLKQLK 99
+ LQKLVPN +K D ++ML+E + Y+K L+
Sbjct: 237 RILQKLVPNGTKVDISTMLEEAVHYVKFLQ 266
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 47 RRRTAAVHNQSE----RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RRR A V ++ + R RR+R++Q+M+ALQ+LVP ++ D ASML+E I Y+K LK
Sbjct: 114 RRRNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLK 170
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 23 ASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNASK 81
++ G+ + + K G H RR A H+ +ER RR++I+++MK LQ LVP +K
Sbjct: 282 SNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNK 341
Query: 82 -TDKASMLDEVIDYLKQLK 99
T KA MLDE+I+Y++ L+
Sbjct: 342 VTGKAVMLDEIINYVQSLQ 360
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 135 (52.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS--ERRRRDRINQKMKA 71
++ D+D S +D D + ++ R AA QS R+RR+RIN++++
Sbjct: 236 ESNCADQDGGGEDSSSKED-DPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRI 294
Query: 72 LQKLVPNASKTDKASMLDEVIDYLKQLK 99
LQ LVPN +K D ++ML+E + Y+K L+
Sbjct: 295 LQNLVPNGTKVDISTMLEEAVHYVKFLQ 322
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 19 DEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVP 77
+E+ G N + E H RR A H+ +ER RR++I ++MK LQ LVP
Sbjct: 276 EEEGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVP 335
Query: 78 NASK-TDKASMLDEVIDYLKQLK 99
+K T KA MLDE+I+Y++ L+
Sbjct: 336 GCNKVTGKALMLDEIINYVQSLQ 358
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 15 TKTTDEDSASHGRSENQDEDHETKTGRSHSSKR-RRTA-----AV-HNQSERRRRDRINQ 67
++ ++ +S G E D ++G + KR RR A A+ H ++ER+RR+++NQ
Sbjct: 388 SRASENNSDGEGGGEWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQ 447
Query: 68 KMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
+ AL+ +VPN SK DKAS+L + + Y+ +L A
Sbjct: 448 RFYALRSVVPNISKMDKASLLGDAVSYINELHA 480
>UNIPROTKB|Q69MD0 [details] [associations]
symbol:OSJNBb0019B14.23 "BHLH-like protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005755
ProteinModelPortal:Q69MD0 EnsemblPlants:LOC_Os09g28900.1
Gramene:Q69MD0 OMA:EMLGAEC Uniprot:Q69MD0
Length = 215
Score = 128 (50.1 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/52 (44%), Positives = 40/52 (76%)
Query: 49 RTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
R H+++ER+RR+RIN + L+ LVP+AS+ DKA++L EV+ Y+++L++
Sbjct: 27 RARRSHSEAERKRRERINAHLDTLRGLVPSASRMDKAALLGEVVRYVRKLRS 78
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 128 (50.1 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 8 ESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQ 67
ES + K ++E+ A +G DE + K +KR + H+ +ER RR++IN+
Sbjct: 74 ESGSKRRRKRSEEEEAMNG-----DETQKPKDVVHVRAKRGQATDSHSLAERVRREKINE 128
Query: 68 KMKALQKLVPNASKT-DKASMLDEVIDYLKQLK 99
++K LQ LVP K A MLD +IDY++ L+
Sbjct: 129 RLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQ 161
>TAIR|locus:2130619 [details] [associations]
symbol:AT4G16430 "AT4G16430" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:Z97341 EMBL:AL161544
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251688 EMBL:AF428368
EMBL:AY057626 EMBL:BT002301 IPI:IPI00546344 PIR:A71431
RefSeq:NP_193376.1 UniGene:At.33082 UniGene:At.4413
ProteinModelPortal:O23487 SMR:O23487 STRING:O23487 PaxDb:O23487
PRIDE:O23487 EnsemblPlants:AT4G16430.1 GeneID:827337
KEGG:ath:AT4G16430 TAIR:At4g16430 eggNOG:NOG246663
InParanoid:O23487 OMA:RSMSINF PhylomeDB:O23487
ProtClustDB:CLSN2685658 Genevestigator:O23487 Uniprot:O23487
Length = 467
Score = 135 (52.6 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 32 DEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEV 91
DE K GR ++ R A H ++ER+RR+++NQ+ AL+ +VPN SK DKAS+L +
Sbjct: 300 DEQKPRKRGRKPANGREE-ALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADA 358
Query: 92 IDYLKQLK 99
I Y+ ++
Sbjct: 359 ITYITDMQ 366
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 129 (50.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 3 TWASYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS--ERR 60
T YE+ L + S S G D +S +S+ + + QS +R
Sbjct: 114 TITDYETSSELVNPSCSSGS-SVGEDSIAATDGSVVLKQSDNSRGHKQCSKDTQSLYAKR 172
Query: 61 RRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RR+RIN++++ LQ+LVPN +K D ++ML+E + Y+K L+
Sbjct: 173 RRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQ 211
>TAIR|locus:2141055 [details] [associations]
symbol:MYC4 "AT4G17880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009718 "anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0045893 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006952 GO:GO:0003677 GO:GO:0009718
GO:GO:0003700 GO:GO:0006351 EMBL:AL161547 EMBL:AL021889
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 eggNOG:NOG295658
ProtClustDB:CLSN2686023 EMBL:AF251689 EMBL:AK221507 IPI:IPI00540927
PIR:T05074 RefSeq:NP_193522.1 UniGene:At.28316
ProteinModelPortal:O49687 SMR:O49687 EnsemblPlants:AT4G17880.1
GeneID:827511 KEGG:ath:AT4G17880 TAIR:At4g17880 InParanoid:O49687
OMA:SCERARQ PhylomeDB:O49687 Genevestigator:O49687 Uniprot:O49687
Length = 589
Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 23 ASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKT 82
A R + E K GR ++ R H ++ER+RR+++NQ+ +L+ +VPN SK
Sbjct: 387 AESNRVVVEPEKKPRKRGRKPANGREEPLN-HVEAERQRREKLNQRFYSLRAVVPNVSKM 445
Query: 83 DKASMLDEVIDYLKQLKA 100
DKAS+L + I Y+ +LK+
Sbjct: 446 DKASLLGDAISYISELKS 463
>TAIR|locus:2035609 [details] [associations]
symbol:MYC2 "AT1G32640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=IEP;RCA] [GO:0043619 "regulation of transcription from RNA
polymerase II promoter in response to oxidative stress"
evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:2000068
"regulation of defense response to insect" evidence=IMP]
[GO:0009611 "response to wounding" evidence=IEP;RCA;TAS]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009620 "response to
fungus" evidence=RCA] [GO:0009694 "jasmonic acid metabolic process"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0045893 GO:GO:0009753 GO:GO:0009611 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0010200
EMBL:AC017118 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0009269
GO:GO:0043619 GO:GO:0051090 eggNOG:NOG295658 GO:GO:0009963
EMBL:X99548 EMBL:AB000875 EMBL:AJ843256 EMBL:AY037203 EMBL:BT003042
EMBL:AF251691 IPI:IPI00543978 PIR:T52293 RefSeq:NP_174541.1
UniGene:At.22648 ProteinModelPortal:Q39204 SMR:Q39204 IntAct:Q39204
STRING:Q39204 PRIDE:Q39204 EnsemblPlants:AT1G32640.1 GeneID:840158
KEGG:ath:AT1G32640 GeneFarm:1895 TAIR:At1g32640 InParanoid:Q39204
KO:K13422 OMA:KRNHPAA PhylomeDB:Q39204 ProtClustDB:CLSN2682813
Genevestigator:Q39204 GermOnline:AT1G32640 GO:GO:2000068
Uniprot:Q39204
Length = 623
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 33 EDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVI 92
E K GR ++ R H ++ER+RR+++NQ+ AL+ +VPN SK DKAS+L + I
Sbjct: 433 EKRPKKRGRKPANGREEPLN-HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAI 491
Query: 93 DYLKQLKA 100
Y+ +LK+
Sbjct: 492 AYINELKS 499
>TAIR|locus:2179122 [details] [associations]
symbol:APTX "APRATAXIN-like" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006790 "sulfur compound metabolic
process" evidence=IDA] [GO:0009150 "purine ribonucleotide metabolic
process" evidence=IDA] [GO:0047627 "adenylylsulfatase activity"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] InterPro:IPR011146
InterPro:IPR011598 InterPro:IPR015880 Pfam:PF00010 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS50888 PROSITE:PS51084 SMART:SM00353
SMART:SM00355 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 Gene3D:3.30.428.10 InterPro:IPR001310
SUPFAM:SSF54197 PROSITE:PS00892 InterPro:IPR019808 eggNOG:NOG278510
KO:K10863 PANTHER:PTHR12486 GO:GO:0006790 EMBL:AL161746
IPI:IPI00539681 PIR:T48153 RefSeq:NP_195751.1 UniGene:At.54671
ProteinModelPortal:Q9M041 SMR:Q9M041 PRIDE:Q9M041
EnsemblPlants:AT5G01310.1 GeneID:830940 KEGG:ath:AT5G01310
GeneFarm:3073 TAIR:At5g01310 HOGENOM:HOG000083464 InParanoid:Q9M041
OMA:GHEGNLQ PhylomeDB:Q9M041 ProtClustDB:CLSN2687115
BioCyc:ARA:AT5G01310-MONOMER Genevestigator:Q9M041 GO:GO:0047627
GO:GO:0009150 InterPro:IPR002589 Pfam:PF01661 PROSITE:PS51154
Uniprot:Q9M041
Length = 912
Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 12 SLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS--ERRRRDRINQKM 69
+L+++ + S + S + H+++TG + S+ T + QS R RR RI+ +
Sbjct: 5 NLRSENPNSSSTTSSSSSSFHR-HKSETGNTKRSRSTSTLSTDPQSVAARDRRHRISDRF 63
Query: 70 KALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
K LQ +VP +K D SMLDE I Y+K LKA
Sbjct: 64 KILQSMVPGGAKMDTVSMLDEAISYVKFLKA 94
>TAIR|locus:2204898 [details] [associations]
symbol:HFR1 "AT1G02340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009585 "red, far-red light
phototransduction" evidence=TAS] [GO:0009642 "response to light
intensity" evidence=IEP] [GO:0009785 "blue light signaling pathway"
evidence=TAS] [GO:0003712 "transcription cofactor activity"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003712
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC064879
GO:GO:0009642 GO:GO:0009785 EMBL:AF288287 EMBL:AF324245
EMBL:AF323182 EMBL:AK117248 IPI:IPI00545685 PIR:G86153
RefSeq:NP_563650.1 UniGene:At.24795 ProteinModelPortal:Q9FE22
SMR:Q9FE22 IntAct:Q9FE22 STRING:Q9FE22 PRIDE:Q9FE22
EnsemblPlants:AT1G02340.1 GeneID:839300 KEGG:ath:AT1G02340
TAIR:At1g02340 eggNOG:NOG274868 HOGENOM:HOG000112891 OMA:FSSHAMR
PhylomeDB:Q9FE22 ProtClustDB:CLSN2916946 Genevestigator:Q9FE22
GermOnline:AT1G02340 Uniprot:Q9FE22
Length = 292
Score = 130 (50.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 42 SHSSKRRRTAAVHNQSERRRRD-RINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
S R + S+RRRRD +++ KM+ LQ+LVPN KTDK S+LD+ I+Y+K L+
Sbjct: 126 SEEFTREVPSVTRKGSKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQ 184
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 133 (51.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 18 TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLV 76
T S G+ + + + K H RR A H+ +ER RR++I+++MK LQ LV
Sbjct: 223 TTNGGKSKGKGAKETSESQ-KEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLV 281
Query: 77 PNASK-TDKASMLDEVIDYLKQLK 99
P SK T KA MLDE+I+Y++ L+
Sbjct: 282 PGCSKVTGKAVMLDEIINYVQSLQ 305
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 136 (52.9 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 20 EDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA 79
E S H + D D + +KR + H+ +ER RR++IN++MK LQ LVP
Sbjct: 605 ELSMEHAGEKAGDADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGC 664
Query: 80 SK-TDKASMLDEVIDYLKQLK 99
+K T KA MLDE+I+Y++ L+
Sbjct: 665 NKITGKAMMLDEIINYVQSLQ 685
>TAIR|locus:2178555 [details] [associations]
symbol:MYC3 "AT5G46760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0006952 GO:GO:0009753 GO:GO:0003677
GO:GO:0009718 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251690 IPI:IPI00533290
RefSeq:NP_199488.1 UniGene:At.28315 ProteinModelPortal:Q9FIP9
SMR:Q9FIP9 DIP:DIP-58585N PaxDb:Q9FIP9 PRIDE:Q9FIP9
EnsemblPlants:AT5G46760.1 GeneID:834719 KEGG:ath:AT5G46760
TAIR:At5g46760 eggNOG:NOG295658 InParanoid:Q9FIP9 OMA:TASSIEM
PhylomeDB:Q9FIP9 ProtClustDB:CLSN2686023 Genevestigator:Q9FIP9
Uniprot:Q9FIP9
Length = 592
Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 33 EDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVI 92
E K GR ++ R H ++ER+RR+++NQ+ +L+ +VPN SK DKAS+L + I
Sbjct: 396 EKKPRKRGRKPANGREEPLN-HVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAI 454
Query: 93 DYLKQLKA 100
Y+ +LK+
Sbjct: 455 SYINELKS 462
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 134 (52.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 33 EDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVI 92
E K GR ++ R H ++ER+RR+++NQ+ AL+ +VPN SK DKAS+L + I
Sbjct: 505 EKRPRKRGRKPANGREEPLN-HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAI 563
Query: 93 DYLKQLK 99
Y+ +L+
Sbjct: 564 SYINELR 570
>UNIPROTKB|Q75IR0 [details] [associations]
symbol:OSJNBb0099P06.13 "Putative uncharacterized protein
OSJNBb0099P06.13" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR002912
InterPro:IPR011598 Pfam:PF00010 Pfam:PF01842 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0016597 GO:GO:0008152
EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC124144
EMBL:AC134341 EMBL:AK110619 RefSeq:NP_001054739.1 UniGene:Os.56950
EnsemblPlants:LOC_Os05g07120.1 EnsemblPlants:LOC_Os05g07120.2
GeneID:4337905 KEGG:osa:4337905 eggNOG:NOG309133
HOGENOM:HOG000241234 OMA:VSCDDRP ProtClustDB:CLSN2691085
Uniprot:Q75IR0
Length = 271
Score = 127 (49.8 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 23/63 (36%), Positives = 45/63 (71%)
Query: 37 TKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLK 96
+ +GRS ++ + +H+++ERRRR+RIN + L++++P+A + DKA++L V++ +K
Sbjct: 54 SSSGRS-AAAQATAMTIHSEAERRRRERINAHLATLRRILPDAKQMDKATLLASVVNQVK 112
Query: 97 QLK 99
LK
Sbjct: 113 HLK 115
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 131 (51.2 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 5 ASYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKR-RRTAAV--HNQSERRR 61
++ S K ++ K + EN D+ + + R RR A H+ +ER R
Sbjct: 217 SAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVR 276
Query: 62 RDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
R++I+++MK LQ LVP +K T KA MLDE+I+Y++ L+
Sbjct: 277 REKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQ 315
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 127 (49.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 27 RSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNASK-TDK 84
+ + + E T H RR A H+ +ER RR++I+++M+ LQ LVP K T K
Sbjct: 119 KKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGK 178
Query: 85 ASMLDEVIDYLKQLK 99
A MLDE+I+Y++ L+
Sbjct: 179 ALMLDEIINYVQTLQ 193
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 130 (50.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 22 SASHGRSENQ---DEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVP 77
S + G+S + D K H RR A H+ +ER RR++I+++MK LQ LVP
Sbjct: 235 SVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVP 294
Query: 78 NASK-TDKASMLDEVIDYLKQLK 99
SK T KA MLDE+I+Y++ L+
Sbjct: 295 GCSKVTGKAVMLDEIINYVQSLQ 317
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 128 (50.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 36 ETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVID 93
E G H RR A H+ +ER RR++I+++MK LQ LVP K T KA MLDE+I
Sbjct: 172 EPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIIS 231
Query: 94 YLKQLK 99
Y++ L+
Sbjct: 232 YVQSLQ 237
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTA----AVHNQS--ERRRRDRINQ 67
KT D S S S + ++ + S S KR+ A A QS R+RR+RIN
Sbjct: 97 KTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERIND 156
Query: 68 KMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++K LQ LVPN +K D ++ML++ + Y+K L+
Sbjct: 157 RLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 20 EDSASHGRSENQDEDH---ETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKL 75
ED G+ + + ++ E H RR A H+ +ER RR+RI+Q+MK LQ L
Sbjct: 177 EDGGGGGQKQGKGKNAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDL 236
Query: 76 VPNASKT-DKASMLDEVIDYLKQLK 99
VP +K KA MLDE+I+Y++ L+
Sbjct: 237 VPGCNKVIGKALMLDEIINYVQSLQ 261
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 20 EDSASHGRSENQDEDHETKTGRS-----HSSKRRRTAA-VHNQSERRRRDRINQKMKALQ 73
+ ++ +G + Q +D +K H RR A H+ +ER RR++I+Q+MK LQ
Sbjct: 248 QSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQ 307
Query: 74 KLVPNASKT-DKASMLDEVIDYLKQLK 99
LVP +K KA MLDE+I+Y++ L+
Sbjct: 308 DLVPGCNKVVGKAVMLDEIINYVQSLQ 334
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 46 KRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
+ +R A H +S ER RR RI+++++ LQ+LVPN K T+ A MLD +DY+K L+
Sbjct: 70 RAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQ 126
>UNIPROTKB|Q657D1 [details] [associations]
symbol:P0697C12.40 "BHLH transcription-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003141
EMBL:AP003296 Uniprot:Q657D1
Length = 484
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 47 RRRTAAVHNQSE----RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
RRR + + + R+RR+RI+++++ LQKLVP +K D ASMLDE +YL+ LK+
Sbjct: 364 RRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKS 421
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 125 (49.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 11 KSLKTKTTDEDSASHGRSENQDEDHETKT-GRSHSSKRRRTAAVHNQSERRRRDRINQKM 69
+SL T++ DS +Q+ K+ G++ S R T + R+RR+RIN+++
Sbjct: 194 QSLSCCTSENDSIG-----SQESPVAAKSNGKAQSGHRSATDP-QSLYARKRRERINERL 247
Query: 70 KALQKLVPNASKTDKASMLDEVIDYLKQLK 99
K LQ LVPN +K D ++ML+E + Y+K L+
Sbjct: 248 KILQNLVPNGTKVDISTMLEEAMHYVKFLQ 277
>UNIPROTKB|Q6Z9R3 [details] [associations]
symbol:P0461F06.33 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000145
eggNOG:NOG315110 EMBL:AP004693 EnsemblPlants:LOC_Os08g36740.1
OMA:SAMREMI Uniprot:Q6Z9R3
Length = 246
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R RR+RI+++++ LQ+LVP +K D ASMLDE I Y+K LK
Sbjct: 167 RMRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 207
Score = 36 (17.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 168 PPPIYSPAASVTLPDP 183
PPP + AA+ T+ P
Sbjct: 225 PPPTATSAAAATVAYP 240
>TAIR|locus:2134583 [details] [associations]
symbol:AT4G00870 "AT4G00870" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161472 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF013294 EMBL:AJ519812 IPI:IPI00537799 PIR:T01559
RefSeq:NP_567195.1 UniGene:At.34506 ProteinModelPortal:O23090
SMR:O23090 EnsemblPlants:AT4G00870.1 GeneID:827990
KEGG:ath:AT4G00870 TAIR:At4g00870 eggNOG:NOG285642
InParanoid:O23090 OMA:SIECELM PhylomeDB:O23090
ProtClustDB:CLSN2917469 Genevestigator:O23090 Uniprot:O23090
Length = 423
Score = 125 (49.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 23 ASHGRSENQDEDHETKTGR-------SHSSKRRRTAAV--HNQSERRRRDRINQKMKALQ 73
+ H +S NQ E K R + ++K + AV H ++E++RR+++N + AL+
Sbjct: 210 SDHSKSGNQQFGSERKRRRKLETTRVAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALR 269
Query: 74 KLVPNASKTDKASMLDEVIDYLKQLKA 100
+VP S+ DKAS+L + + Y++ LK+
Sbjct: 270 AIVPKVSRMDKASLLSDAVSYIESLKS 296
>TAIR|locus:2046198 [details] [associations]
symbol:FRU "AT2G28160" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010039 "response to iron ion" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0034756 "regulation of iron ion
transport" evidence=IMP] [GO:0071281 "cellular response to iron
ion" evidence=IEP] [GO:0071369 "cellular response to ethylene
stimulus" evidence=IEP] [GO:0071732 "cellular response to nitric
oxide" evidence=IEP] [GO:0000041 "transition metal ion transport"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0071281 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC005851 GO:GO:0071732 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0071369 EMBL:AF488570 EMBL:BT026446 IPI:IPI00547189
PIR:E84681 RefSeq:NP_850114.1 UniGene:At.43510
ProteinModelPortal:Q0V7X4 SMR:Q0V7X4 IntAct:Q0V7X4 STRING:Q0V7X4
PaxDb:Q0V7X4 PRIDE:Q0V7X4 EnsemblPlants:AT2G28160.1 GeneID:817362
KEGG:ath:AT2G28160 TAIR:At2g28160 eggNOG:NOG236355
HOGENOM:HOG000006047 InParanoid:Q0V7X4 OMA:NLKLWIT PhylomeDB:Q0V7X4
ProtClustDB:CLSN2690963 Genevestigator:Q0V7X4 GO:GO:0034756
Uniprot:Q0V7X4
Length = 318
Score = 124 (48.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 16 KTTDEDSASHGRSENQDE-----DHETKTGRSHSSKRRRTAAVHNQ-SERRRRDRINQKM 69
++ D DS G E++++ D T + +++ +T SERRRR R+ K+
Sbjct: 88 RSFDGDSVRAGGEEDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKL 147
Query: 70 KALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
AL+ LVPN +K DKAS++ + + Y+++L++
Sbjct: 148 YALRSLVPNITKMDKASIVGDAVLYVQELQS 178
>UNIPROTKB|Q6Z339 [details] [associations]
symbol:B1121A12.20 "Os02g0726700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
EMBL:AP008208 EMBL:AP005284 RefSeq:NP_001047993.1 UniGene:Os.52592
GeneID:4330593 KEGG:osa:4330593 ProtClustDB:CLSN2919237
Uniprot:Q6Z339
Length = 344
Score = 124 (48.7 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 20 EDSASHGRSENQDEDHETKT-GRSHSSKRRRTAAV----HNQSERRRRDRINQKMKALQK 74
+DSA RS Q T+ GRS +S + + H+ +E+RRR +IN +++ L++
Sbjct: 111 QDSAIDQRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRE 170
Query: 75 LVPNAS-KTDKASMLDEVIDYLKQLK 99
L+P+ K DKAS L EVI+Y++ L+
Sbjct: 171 LLPHTDQKRDKASFLSEVIEYIRFLQ 196
>UNIPROTKB|Q6YUS3 [details] [associations]
symbol:OSJNBb0088N06.15 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0048653
"anther development" evidence=IMP] [GO:0048654 "anther
morphogenesis" evidence=IMP] [GO:0048657 "tapetal cell
differentiation" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG313389
HOGENOM:HOG000033929 OMA:PRTKSCE EMBL:AP008208 EMBL:CM000139
GO:GO:0048657 EMBL:AP004078 EMBL:AP005851 RefSeq:NP_001045710.1
UniGene:Os.50000 EnsemblPlants:LOC_Os02g02820.1 GeneID:4328113
KEGG:osa:4328113 ProtClustDB:CLSN2692391 Uniprot:Q6YUS3
Length = 552
Score = 125 (49.1 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 25 HGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDK 84
HG D D E GRS +KR++ + ++ER+RR ++N + L+ LVPN +K D+
Sbjct: 262 HGGDPEDDGDGE---GRSGGAKRQQCKNL--EAERKRRKKLNGHLYKLRSLVPNITKMDR 316
Query: 85 ASMLDEVIDYLKQLK 99
AS+L + IDY+ L+
Sbjct: 317 ASILGDAIDYIVGLQ 331
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 33 EDHETKTGRSHSSKRRRTAAVHNQ---SERRRRDRINQKMKALQKLVPNASKTDKASMLD 89
E+ + +G S S T+ ++ SER RR ++NQ++ AL+ +VPN SK DKAS++
Sbjct: 31 EEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIK 90
Query: 90 EVIDYLKQL 98
+ IDY+++L
Sbjct: 91 DSIDYMQEL 99
>UNIPROTKB|Q9FTQ1 [details] [associations]
symbol:P0665D10.21 "DNA binding protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:AP002861 EMBL:AP002745 RefSeq:NP_001042409.1 UniGene:Os.26488
STRING:Q9FTQ1 GeneID:4324583 KEGG:osa:4324583 OMA:VRFTFLI
ProtClustDB:CLSN2691217 Uniprot:Q9FTQ1
Length = 267
Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 40 GRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
G K H+++ERRRR+RIN + L+ +VP K DKA++L EV+ ++K+LK
Sbjct: 68 GGGREEKAAMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLK 127
Query: 100 A 100
+
Sbjct: 128 S 128
>ZFIN|ZDB-GENE-000509-2 [details] [associations]
symbol:arntl2 "aryl hydrocarbon receptor nuclear
translocator-like 2" species:7955 "Danio rerio" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007165 "signal transduction" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009648 "photoperiodism" evidence=IEP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009416 "response
to light stimulus" evidence=IGI] [GO:0007623 "circadian rhythm"
evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000014
InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-000509-2
GO:GO:0005737 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
TIGRFAMs:TIGR00229 HOGENOM:HOG000234379 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOVERGEN:HBG107503 OrthoDB:EOG4DFPNB GO:GO:0009648
eggNOG:NOG285764 EMBL:BC128806 IPI:IPI00482035 UniGene:Dr.81323
ProteinModelPortal:A1A5T9 InParanoid:A1A5T9 ArrayExpress:A1A5T9
Uniprot:A1A5T9
Length = 631
Score = 125 (49.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 1 MMTWASYESLKSLKTKTTDE-DSASHGRSENQDEDHETKTGRSHSSKRRRTAAV---HNQ 56
+MT S SL L K D+ + N DED E GRS + + + H+Q
Sbjct: 37 LMTPTSASSLMELPRKRKGSMDNLEMKSASNLDEDMEDDAGRSEDDQHLKIKCIREPHSQ 96
Query: 57 SERRRRDRINQKMKALQKLVPNAS----KTDKASMLDEVIDYLKQLK 99
E+RRRD++N + L ++P + K DK ++L + +LK LK
Sbjct: 97 IEKRRRDKMNNLIDELAAMIPTCNPMSRKLDKLTVLRMAVQHLKSLK 143
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 30 NQDEDHETKTGRSHSSKRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASKTDKASM 87
N+ ++ TK S + K +A +QS + RR RIN++++ LQ+L+PN +K D ++M
Sbjct: 94 NRSKEVRTKMSVSKACKHS-VSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTM 152
Query: 88 LDEVIDYLKQL 98
L+E I Y+K L
Sbjct: 153 LEEAIQYVKFL 163
>UNIPROTKB|Q6ZJC8 [details] [associations]
symbol:OJ1666_A04.16 "Os08g0477900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003917 RefSeq:NP_001062047.1 UniGene:Os.73988
EnsemblPlants:LOC_Os08g37290.1 GeneID:4345836 KEGG:osa:4345836
OMA:LLNRDEH ProtClustDB:CLSN2697408 Uniprot:Q6ZJC8
Length = 223
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 21/46 (45%), Positives = 37/46 (80%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H+++ER+RR RIN + L+ LVP+AS+ DKA++L EV+ ++++L+
Sbjct: 23 HSEAERKRRQRINAHLATLRTLVPSASRMDKAALLGEVVRHVRELR 68
>UNIPROTKB|Q2R3F6 [details] [associations]
symbol:Os11g0523700 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0050826
GO:GO:0010440 Gene3D:4.10.280.10 SUPFAM:SSF47459
RefSeq:NP_001067987.2 UniGene:Os.56356
EnsemblPlants:LOC_Os11g32100.1 GeneID:4350609 KEGG:osa:4350609
OMA:DGKDSNA Uniprot:Q2R3F6
Length = 524
Score = 124 (48.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 6 SYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRI 65
S ++ L + D ++ + + T TG K++ A + +ERRRR ++
Sbjct: 290 SIDASGGLNYDSEDARGGEDSGAKKESNANSTVTGDG-KGKKKGMPAKNLMAERRRRKKL 348
Query: 66 NQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98
N ++ L+ +VP SK D+AS+L + I+YLK+L
Sbjct: 349 NDRLYMLRSVVPKISKMDRASILGDAIEYLKEL 381
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 20 EDSASHGRSENQDEDHETKTGRSHSSKR-RRTAAV--HNQSERRRRDRINQKMKALQKLV 76
E S+ G S+ ++ ++ + + + R RR A H+ +ER RR++I++KM ALQ ++
Sbjct: 127 ETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDII 186
Query: 77 PNASKT-DKASMLDEVIDYLKQLK 99
P +K KA +LDE+I+Y++ L+
Sbjct: 187 PGCNKIIGKALVLDEIINYIQSLQ 210
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H SERRRR+++N+ L+ LVP+ K DKAS+L E I YLK+L+
Sbjct: 189 HVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKELE 234
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 15 TKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQ 73
+K E S G +++ + E H RR A H+ +ER RR++I+++M LQ
Sbjct: 162 SKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQ 221
Query: 74 KLVPNASK-TDKASMLDEVIDYLKQLK 99
LVP ++ T KA MLDE+I+Y++ L+
Sbjct: 222 DLVPGCNRITGKAVMLDEIINYVQSLQ 248
>UNIPROTKB|Q7XT55 [details] [associations]
symbol:OSJNBa0084K20.3 "OSJNBa0076N16.1 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000141 EMBL:AL606613 EMBL:AL731617 Uniprot:Q7XT55
Length = 218
Score = 112 (44.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 46 KRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLKA 100
+ +R A H +S ER RR RI++K++ LQ LVPN K T + MLD +D++K L++
Sbjct: 135 RAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQS 192
Score = 37 (18.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 25 HGRSENQDEDHETKTGRSHSS 45
HGRSE H+ RS SS
Sbjct: 49 HGRSEENVSTHDHVV-RSFSS 68
>TAIR|locus:2199307 [details] [associations]
symbol:AT1G68240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009686 "gibberellin biosynthetic process" evidence=RCA]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC016447
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AJ577585 EMBL:AY735551
EMBL:AY735552 EMBL:AY924719 IPI:IPI00528459 IPI:IPI00657054
IPI:IPI00919318 PIR:H96705 RefSeq:NP_001031251.1 RefSeq:NP_176991.2
UniGene:At.35550 ProteinModelPortal:Q5XVH0 SMR:Q5XVH0
EnsemblPlants:AT1G68240.1 GeneID:843153 KEGG:ath:AT1G68240
TAIR:At1g68240 eggNOG:NOG270610 HOGENOM:HOG000095221 OMA:EGTHEEE
PhylomeDB:Q5XVH0 ProtClustDB:CLSN2681409 Genevestigator:Q5XVH0
Uniprot:Q5XVH0
Length = 185
Score = 117 (46.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 29 ENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPN-ASKTDKASM 87
E DE+ + ++ R +KR+R+ E++RR I K+ LQ L+PN +K D AS
Sbjct: 49 EKHDEEPDEESYRM--AKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASK 106
Query: 88 LDEVIDYLKQLK 99
L+ +I+Y+K LK
Sbjct: 107 LENIIEYIKSLK 118
>TAIR|locus:2126856 [details] [associations]
symbol:IND "AT4G00120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010197 "polar nucleus fusion" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161471
GO:GO:0010197 EMBL:AF069299 EMBL:BT029443 EMBL:AF488578
IPI:IPI00532644 PIR:T01340 RefSeq:NP_191923.1 UniGene:At.34598
ProteinModelPortal:O81313 SMR:O81313 IntAct:O81313 STRING:O81313
PRIDE:O81313 EnsemblPlants:AT4G00120.1 GeneID:827911
KEGG:ath:AT4G00120 TAIR:At4g00120 eggNOG:NOG274244
HOGENOM:HOG000113070 InParanoid:O81313 OMA:DWNKAND PhylomeDB:O81313
ProtClustDB:CLSN2916160 Genevestigator:O81313 Uniprot:O81313
Length = 198
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RRRR+RI++K++ L+++VP +K D ASMLDE I Y K LK
Sbjct: 128 RRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 122 (48.0 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
R+RR+RI++K++ LQ LVP +K D ASMLDE +YLK L+A
Sbjct: 285 RQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRA 326
>TAIR|locus:2205455 [details] [associations]
symbol:BIM2 "AT1G69010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC011665 EMBL:BT002352 EMBL:AY080650 EMBL:AY086798
EMBL:AF488627 IPI:IPI00519398 PIR:E96714 RefSeq:NP_177064.1
UniGene:At.35458 ProteinModelPortal:Q9CAA4 SMR:Q9CAA4 PaxDb:Q9CAA4
PRIDE:Q9CAA4 EnsemblPlants:AT1G69010.1 GeneID:843233
KEGG:ath:AT1G69010 TAIR:At1g69010 eggNOG:NOG246683
HOGENOM:HOG000070523 InParanoid:Q9CAA4 OMA:YVQYLQE PhylomeDB:Q9CAA4
ProtClustDB:CLSN2682349 Genevestigator:Q9CAA4 GermOnline:AT1G69010
Uniprot:Q9CAA4
Length = 311
Score = 121 (47.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 19 DEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPN 78
D +S G S N H + + + K + H+ +E+RRR +IN++ + L++L+PN
Sbjct: 17 DFNSKREGPSSNTTV-HSNRDSKEND-KASAIRSKHSVTEQRRRSKINERFQILRELIPN 74
Query: 79 AS-KTDKASMLDEVIDYLKQLK 99
+ K D AS L EVIDY++ L+
Sbjct: 75 SEQKRDTASFLLEVIDYVQYLQ 96
>TAIR|locus:2074865 [details] [associations]
symbol:HEC2 "AT3G50330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] [GO:0080126 "ovary
septum development" evidence=IGI] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL132976
HOGENOM:HOG000242863 ProtClustDB:CLSN2684406 GO:GO:0048462
GO:GO:0010500 EMBL:BT010607 EMBL:AK175679 EMBL:AK175912
EMBL:AK176020 IPI:IPI00532987 PIR:T45579 RefSeq:NP_190602.1
UniGene:At.35505 ProteinModelPortal:Q9SND4 SMR:Q9SND4 IntAct:Q9SND4
EnsemblPlants:AT3G50330.1 GeneID:824195 KEGG:ath:AT3G50330
TAIR:At3g50330 eggNOG:NOG315110 InParanoid:Q9SND4 OMA:NANMAAM
PhylomeDB:Q9SND4 Genevestigator:Q9SND4 GO:GO:0080126 Uniprot:Q9SND4
Length = 231
Score = 119 (46.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R RR+RI+++++ LQ+LVP +K D ASMLDE I Y+K LK
Sbjct: 135 RHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 175
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 121 (47.7 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 28 SENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQKLVPNASKT-DKA 85
+E + + E H RR A H+ +ER RR++I+++MK LQ LVP +K KA
Sbjct: 120 TEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 179
Query: 86 SMLDEVIDYLKQLK 99
+LDE+I+Y++ L+
Sbjct: 180 LVLDEIINYIQSLQ 193
>TAIR|locus:2155543 [details] [associations]
symbol:HEC1 "HECATE 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010500 "transmitting tissue
development" evidence=IGI] [GO:0048462 "carpel formation"
evidence=IMP] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:AF488618 EMBL:AK228927 IPI:IPI00530790
RefSeq:NP_201507.1 UniGene:At.28829 ProteinModelPortal:Q9FHA7
SMR:Q9FHA7 IntAct:Q9FHA7 EnsemblPlants:AT5G67060.1 GeneID:836841
KEGG:ath:AT5G67060 TAIR:At5g67060 eggNOG:NOG267961
HOGENOM:HOG000242863 InParanoid:Q9FHA7 OMA:FLFNSTH PhylomeDB:Q9FHA7
ProtClustDB:CLSN2684406 Genevestigator:Q9FHA7 GO:GO:0048462
GO:GO:0010500 Uniprot:Q9FHA7
Length = 241
Score = 119 (46.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R RR+RI+++++ LQ+LVP +K D ASMLDE I Y+K LK
Sbjct: 138 RHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 178
>TAIR|locus:2059979 [details] [associations]
symbol:FBH4 "AT2G42280" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0046685
"response to arsenic-containing substance" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC002561 GO:GO:0048573
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG312535
HOGENOM:HOG000242890 EMBL:BT015339 EMBL:BT015712 EMBL:AK228981
IPI:IPI00530686 IPI:IPI00538142 PIR:T00937 RefSeq:NP_181757.2
RefSeq:NP_973670.1 UniGene:At.12448 UniGene:At.43726
ProteinModelPortal:Q66GR3 SMR:Q66GR3 PRIDE:Q66GR3
EnsemblPlants:AT2G42280.1 GeneID:818829 KEGG:ath:AT2G42280
TAIR:At2g42280 InParanoid:Q66GR3 OMA:NDNRANC PhylomeDB:Q66GR3
ProtClustDB:CLSN2681218 Genevestigator:Q66GR3 Uniprot:Q66GR3
Length = 359
Score = 118 (46.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 46 KRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
+ +R A H +S ER RR RI+++M+ LQ+LVPN K T+ + MLD +DY+K L+
Sbjct: 280 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQ 336
Score = 34 (17.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 7 YESLKSLKTKTTDEDSASH 25
Y S+++L DE+S S+
Sbjct: 151 YGSMRNLMNYEEDEESPSN 169
>TAIR|locus:2155725 [details] [associations]
symbol:bHLH093 "AT5G65640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB026639 HOGENOM:HOG000029066 EMBL:AF488621 EMBL:BT025665
EMBL:AK229018 EMBL:AY085134 IPI:IPI00533579 IPI:IPI00785991
RefSeq:NP_001078801.1 RefSeq:NP_569014.1 UniGene:At.28897
ProteinModelPortal:Q9LSL1 SMR:Q9LSL1 EnsemblPlants:AT5G65640.1
GeneID:836690 KEGG:ath:AT5G65640 TAIR:At5g65640 eggNOG:NOG245311
InParanoid:Q9LSL1 OMA:PLMESDQ PhylomeDB:Q9LSL1
ProtClustDB:CLSN2686406 Genevestigator:Q9LSL1 Uniprot:Q9LSL1
Length = 351
Score = 121 (47.7 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 38 KTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQ 97
+T + S K + + +ERRRR R+N ++ L+ +VP SK D+ S+L + IDY+K+
Sbjct: 163 ETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKE 222
Query: 98 L 98
L
Sbjct: 223 L 223
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 120 (47.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 15 TKTTDEDSASHGRSENQDEDHETKTGRS-HS-SKRRRTAAVHNQSE--RRRRDRINQKMK 70
T TT +A+ G G H SK++R QS + RR+RI+++++
Sbjct: 157 TTTTPRSAAASGSQRRARPPPSPLQGSELHEYSKKQRANNKETQSSAAKSRRERISERLR 216
Query: 71 ALQKLVPNASKTDKASMLDEVIDYLK 96
ALQ+LVP+ K D +MLD I Y+K
Sbjct: 217 ALQELVPSGGKVDMVTMLDRAISYVK 242
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 122 (48.0 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 28 SENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASM 87
+E+ + G K++ A + +ERRRR ++N ++ L+ +VP SK D+AS+
Sbjct: 282 NESGKAAESVQIGGGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASI 341
Query: 88 LDEVIDYLKQL 98
L + IDYLK+L
Sbjct: 342 LGDAIDYLKEL 352
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 119 (46.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 18 TDEDSASHGR--SENQDEDHETKTGRSHSSKRRRTAA-VHNQSERRRRDRINQKMKALQK 74
T+ S G+ + ++E+ E + H RR A H+ +ER RR +IN++++ LQ
Sbjct: 117 TETGSLRRGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQD 176
Query: 75 LVPNASKT-DKASMLDEVIDYLKQLK 99
+VP K A+MLDE+I+Y++ L+
Sbjct: 177 MVPGCYKAMGMATMLDEIINYVQSLQ 202
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 118 (46.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R RR+RI+++++ LQ+LVP +K D ASMLDE I Y+K LK
Sbjct: 135 RHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLK 175
>TAIR|locus:2172932 [details] [associations]
symbol:NIG1 "AT5G46830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005509 "calcium ion binding" evidence=IDA]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0042538
"hyperosmotic salinity response" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0005509
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238207 InterPro:IPR025610 Pfam:PF14215 GO:GO:0042538
EMBL:AF252636 EMBL:AB022221 IPI:IPI00544679 RefSeq:NP_199495.1
UniGene:At.28311 ProteinModelPortal:Q9LUK7 SMR:Q9LUK7
EnsemblPlants:AT5G46830.1 GeneID:834727 KEGG:ath:AT5G46830
TAIR:At5g46830 eggNOG:NOG258937 InParanoid:Q9LUK7 OMA:HVEAERM
PhylomeDB:Q9LUK7 ProtClustDB:CLSN2914881 ArrayExpress:Q9LUK7
Genevestigator:Q9LUK7 Uniprot:Q9LUK7
Length = 511
Score = 122 (48.0 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 38 KTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQ 97
K GR + R + H ++ER RR+++N + AL+ +VPN SK DK S+L++ + Y+ +
Sbjct: 329 KRGRKPAHGRDKPLN-HVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINE 387
Query: 98 LKA 100
LK+
Sbjct: 388 LKS 390
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 120 (47.3 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 9 SLKSLKTKTTD-EDSASHGRSENQDEDHETKTGRSHSSKRRRTAAV---HNQSERRRRDR 64
S S TKT E S + + D+ +K ++ RR + H +ER+RR +
Sbjct: 84 SFGSPDTKTNPVETSLNFSNQVSMDQKVGSKRKDCVNNGGRREPHLLKEHVLAERKRRQK 143
Query: 65 INQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
+N+++ AL L+P KTDKA++L++ I +LKQL+
Sbjct: 144 LNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQ 178
>UNIPROTKB|Q7XPS7 [details] [associations]
symbol:OSJNBa0065O17.4 "OSJNBa0065O17.4 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL606682
ProteinModelPortal:Q7XPS7 Gramene:Q7XPS7 Uniprot:Q7XPS7
Length = 567
Score = 122 (48.0 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 39 TGRSHSSKRRRTAAVHNQ--SERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLK 96
TGR + + + + N SERRRR+++N+ L+ +VP+ K DKAS+L+E I YLK
Sbjct: 376 TGRGSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLK 435
Query: 97 QLK 99
L+
Sbjct: 436 VLE 438
>UNIPROTKB|Q67TR8 [details] [associations]
symbol:B1342C04.6 "Basic helix-loop-helix (BHLH)-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP005655 EMBL:AP006057
EMBL:AK060477 EMBL:AK070458 RefSeq:NP_001063357.1 UniGene:Os.51063
EnsemblPlants:LOC_Os09g28210.1 GeneID:4347252 KEGG:osa:4347252
OMA:AYPAFHA ProtClustDB:CLSN2697769 Uniprot:Q67TR8
Length = 236
Score = 118 (46.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
R RR+RI+++++ LQ+LVP +K D ASMLDE I Y+K LK+
Sbjct: 157 RLRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKS 198
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 122 (48.0 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 21 DSASHGRSENQDED---HETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP 77
DS S + DED ++ K+G+ +K +ERRRR ++N ++ AL+ LVP
Sbjct: 286 DSGSDCSDQIDDEDDPKYKKKSGKGSQAKNL-------MAERRRRKKLNDRLYALRSLVP 338
Query: 78 NASKTDKASMLDEVIDYLKQLK 99
+K D+AS+L + I+Y+K+L+
Sbjct: 339 RITKLDRASILGDAINYVKELQ 360
>TAIR|locus:2142419 [details] [associations]
symbol:AT5G10570 "AT5G10570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL353995 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488594 IPI:IPI00529696 PIR:T49982
RefSeq:NP_196619.1 UniGene:At.32362 ProteinModelPortal:Q9LXA9
SMR:Q9LXA9 EnsemblPlants:AT5G10570.1 GeneID:830922
KEGG:ath:AT5G10570 TAIR:At5g10570 eggNOG:NOG310833
HOGENOM:HOG000029066 InParanoid:Q9LXA9 OMA:SSAFDYP PhylomeDB:Q9LXA9
ProtClustDB:CLSN2914918 Genevestigator:Q9LXA9 Uniprot:Q9LXA9
Length = 315
Score = 119 (46.9 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 38 KTGRSHSSKRRRTAAVHN-QSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLK 96
+T + S+K+ N +ERRRR R+N ++ L+ +VP +K D+ S+L + IDY+K
Sbjct: 135 ETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMK 194
Query: 97 QL 98
+L
Sbjct: 195 EL 196
>UNIPROTKB|C9JBW0 [details] [associations]
symbol:KIAA2018 "Basic helix-loop-helix domain-containing
protein KIAA2018" species:9606 "Homo sapiens" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC055740 HGNC:HGNC:30494 ChiTaRS:KIAA2018
EMBL:AC108693 IPI:IPI00829891 ProteinModelPortal:C9JBW0 SMR:C9JBW0
Ensembl:ENST00000491165 HOGENOM:HOG000185801 ArrayExpress:C9JBW0
Bgee:C9JBW0 Uniprot:C9JBW0
Length = 88
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 34 DHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NASKTDKASMLDEV 91
++ET T + H K R T HN ER R+ +IN + + +L+P A K K +LD+
Sbjct: 6 ENETPTKKQHRKKNRET---HNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQA 62
Query: 92 IDYLKQLK 99
Y+ +LK
Sbjct: 63 FKYITELK 70
>UNIPROTKB|E9PKF0 [details] [associations]
symbol:ARNTL "Aryl hydrocarbon receptor nuclear
translocator-like protein 1" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0000982 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0016604 "nuclear
body" evidence=IEA] [GO:0032922 "circadian regulation of gene
expression" evidence=IEA] [GO:0042176 "regulation of protein
catabolic process" evidence=IEA] [GO:0043425 "bHLH transcription
factor binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50888
SMART:SM00353 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
GO:GO:0005667 GO:GO:0000060 GO:GO:0000982 GO:GO:0001190
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0042176 EMBL:AC016884
EMBL:AC022878 IPI:IPI00413132 HGNC:HGNC:701
ProteinModelPortal:E9PKF0 SMR:E9PKF0 Ensembl:ENST00000529388
ArrayExpress:E9PKF0 Bgee:E9PKF0 Uniprot:E9PKF0
Length = 135
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 12 SLKTKTTDEDSASHGRS----ENQDEDHETKTGR----SHSSKRRRTAAVHNQSERRRRD 63
SL T D + G S E+ D D + GR H + + H+Q E+RRRD
Sbjct: 27 SLGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRD 86
Query: 64 RINQKMKALQKLVP--NAS--KTDKASMLDEVIDYLKQLK 99
++N + L LVP NA K DK ++L + ++K L+
Sbjct: 87 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>UNIPROTKB|Q8S0N2 [details] [associations]
symbol:P0692C11.41-1 "BHLH transcription factor-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 EMBL:AP003381 EMBL:AP003273 EMBL:AK106119
RefSeq:NP_001044022.1 UniGene:Os.25546 GeneID:4327679
KEGG:osa:4327679 eggNOG:NOG254276 OMA:EPDMEAM
ProtClustDB:CLSN2919059 Uniprot:Q8S0N2
Length = 393
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
R RR+R++ +++ LQKLVP +K D ASMLDE YLK LK+
Sbjct: 291 RLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKS 332
>UNIPROTKB|Q8H8E4 [details] [associations]
symbol:OJ1006F06.1 "Putative bHLH transcription protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000029066 EMBL:AC099399 ProteinModelPortal:Q8H8E4
STRING:Q8H8E4 Gramene:Q8H8E4 Uniprot:Q8H8E4
Length = 430
Score = 119 (46.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98
SK T + + +ERRRR R+N ++ L+ +VP SK D+ S+L + IDY+K+L
Sbjct: 174 SKLHGTPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKEL 227
>UNIPROTKB|Q5TKP7 [details] [associations]
symbol:OJ1362_G11.11 "Putative uncharacterized protein
OJ1362_G11.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC104713 ProteinModelPortal:Q5TKP7
EnsemblPlants:LOC_Os05g46370.1 KEGG:dosa:Os05t0541400-00
Gramene:Q5TKP7 HOGENOM:HOG000238211 Uniprot:Q5TKP7
Length = 416
Score = 118 (46.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
R RR+R++++++ LQ+LVP SK D A+MLDE YLK LK+
Sbjct: 313 RLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKS 354
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 116 (45.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/62 (35%), Positives = 41/62 (66%)
Query: 38 KTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQ 97
K G++ S+ T + + + RR+RI+++++ LQ+LVPN +K D +ML++ I Y+K
Sbjct: 192 KAGKAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKF 251
Query: 98 LK 99
L+
Sbjct: 252 LQ 253
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 117 (46.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H +ER+RR++++Q+ AL K+VP K DKAS+L + I Y+KQL+
Sbjct: 182 HILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQ 227
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 118 (46.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 26 GRSENQDEDHET-KTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDK 84
GR QD+ + S+ A H +ER+RR+++ Q+ AL +VP KTDK
Sbjct: 259 GRGWQQDDGVGVFQQPPERRSRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDK 318
Query: 85 ASMLDEVIDYLKQLK 99
S+L IDY+KQL+
Sbjct: 319 ISLLGSTIDYVKQLE 333
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 119 (46.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 35 HETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDY 94
H+ + S + R H E++RR+++N++ L+K++P+ +K DK S+LD+ I+Y
Sbjct: 423 HQKEKLMLDSPEARDETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEY 482
Query: 95 LKQLK 99
L++L+
Sbjct: 483 LQELE 487
>SGD|S000000199 [details] [associations]
symbol:RTG3 "Transcription factor for retrograde (RTG) and
TOR pathways" species:4932 "Saccharomyces cerevisiae" [GO:0000422
"mitochondrion degradation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0071400 "cellular
response to oleic acid" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=IMP]
[GO:0031930 "mitochondria-nucleus signaling pathway"
evidence=IEA;IDA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IDA;IMP]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024099 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
SGD:S000000199 GO:GO:0005634 GO:GO:0005737 GO:GO:0043565
GO:GO:0045944 EMBL:BK006936 GO:GO:0031930 GO:GO:0071400
GO:GO:0000981 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0000422
PANTHER:PTHR10014 EMBL:X79489 GO:GO:0042991 EMBL:U46012 EMBL:Z35864
EMBL:Z35865 PIR:S74319 RefSeq:NP_009447.1 ProteinModelPortal:P38165
SMR:P38165 DIP:DIP-2501N IntAct:P38165 MINT:MINT-1555168
STRING:P38165 PaxDb:P38165 EnsemblFungi:YBL103C GeneID:852171
KEGG:sce:YBL103C CYGD:YBL103c eggNOG:NOG293671 HOGENOM:HOG000066067
OMA:SENSEER OrthoDB:EOG4D82GC NextBio:970620 Genevestigator:P38165
GermOnline:YBL103C PANTHER:PTHR10014:SF6 Uniprot:P38165
Length = 486
Score = 106 (42.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 34/99 (34%), Positives = 46/99 (46%)
Query: 12 SLKTKTTDEDSASHGRSENQDEDHETKT--GRSHSSKRRRTAAVHNQSERRRRDRINQKM 69
S+ T T S S +EN K G + K RR HN ERRRR+ I QK+
Sbjct: 246 SINTPRTRHTSISSNMTENIGPGSVPKILGGLTSDEKLRRKREFHNAVERRRRELIKQKI 305
Query: 70 KALQKLVPNAS----------KTDKASMLDEVIDYLKQL 98
K L +LVP + K +K +LD ++YL+ L
Sbjct: 306 KELGQLVPPSLLNYDDLGKQIKPNKGIILDRTVEYLQYL 344
Score = 49 (22.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 184 YYAFLAQSMNVELYNKMAALFR-QQVKQNTIQQAACSPSMQSNH 226
Y +LA+ + ++ K A L + +++++ AA SP ++H
Sbjct: 340 YLQYLAEILEIQARKKKALLAKIKELEEKKSSVAALSPFTNNHH 383
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 114 (45.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 46 KRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLKA 100
+ +R A H +S ER RR RI+ +++ LQ+LVPN K T+ A ML+E ++Y+K L++
Sbjct: 182 RAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQS 239
>TAIR|locus:2028957 [details] [associations]
symbol:RHD6 "AT1G66470" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0048766 "root
hair initiation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048766 EMBL:AC074025
EMBL:AY128310 EMBL:BT006320 EMBL:AF488615 IPI:IPI00529158
PIR:C96690 RefSeq:NP_176820.1 UniGene:At.35765
ProteinModelPortal:Q9C707 SMR:Q9C707 IntAct:Q9C707
EnsemblPlants:AT1G66470.1 GeneID:842965 KEGG:ath:AT1G66470
TAIR:At1g66470 eggNOG:NOG301765 HOGENOM:HOG000006063
InParanoid:Q9C707 OMA:HESFPPP PhylomeDB:Q9C707
ProtClustDB:CLSN2681768 Genevestigator:Q9C707 Uniprot:Q9C707
Length = 298
Score = 115 (45.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 30/92 (32%), Positives = 54/92 (58%)
Query: 11 KSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHN-QS--ERRRRDRINQ 67
+SL K+ + SH E+ + +G + +K + T + + QS + RR+RI++
Sbjct: 162 ESLSPKSAG-NKRSH-TGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISE 219
Query: 68 KMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
++K LQ+LVPN +K D +ML++ I Y+K L+
Sbjct: 220 RLKILQELVPNGTKVDLVTMLEKAISYVKFLQ 251
>TAIR|locus:2026037 [details] [associations]
symbol:FBH3 "AT1G51140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0048573 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC079828 EMBL:AY034941 EMBL:AY063120
IPI:IPI00519239 PIR:H96548 RefSeq:NP_564583.1 UniGene:At.19155
ProteinModelPortal:Q9C690 SMR:Q9C690 PaxDb:Q9C690 PRIDE:Q9C690
EnsemblPlants:AT1G51140.1 GeneID:841537 KEGG:ath:AT1G51140
TAIR:At1g51140 eggNOG:NOG312535 HOGENOM:HOG000242890
InParanoid:Q9C690 OMA:TKDEDSA PhylomeDB:Q9C690
ProtClustDB:CLSN2917227 Genevestigator:Q9C690 Uniprot:Q9C690
Length = 379
Score = 116 (45.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 39/96 (40%), Positives = 52/96 (54%)
Query: 16 KTTDEDSAS------HGRSENQD-EDHETKTGRSHSSKRR--RTAAVHNQS--ERRRRDR 64
KT DEDSAS H S + D E S K R R A H +S ER RR +
Sbjct: 266 KTKDEDSASRRPPLAHHMSLPKSLSDIEQLLSDSIPCKIRAKRGCATHPRSIAERVRRTK 325
Query: 65 INQKMKALQKLVPNA-SKTDKASMLDEVIDYLKQLK 99
I+++M+ LQ LVPN ++T+ A MLD + Y+K L+
Sbjct: 326 ISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQ 361
>TAIR|locus:2026629 [details] [associations]
symbol:EGL3 "AT1G63650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009957 "epidermal
cell fate specification" evidence=RCA;IMP] [GO:0001708 "cell fate
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009913 "epidermal cell
differentiation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251687 EMBL:AF013465
EMBL:AF027732 EMBL:AC011622 IPI:IPI00545374 PIR:D96661
RefSeq:NP_001185302.1 RefSeq:NP_176552.1 RefSeq:NP_974080.1
UniGene:At.25024 ProteinModelPortal:Q9CAD0 SMR:Q9CAD0 IntAct:Q9CAD0
STRING:Q9CAD0 PRIDE:Q9CAD0 EnsemblPlants:AT1G63650.1
EnsemblPlants:AT1G63650.2 EnsemblPlants:AT1G63650.3 GeneID:842669
KEGG:ath:AT1G63650 GeneFarm:1894 TAIR:At1g63650 eggNOG:NOG320411
HOGENOM:HOG000237985 InParanoid:Q9CAD0 OMA:ERASANC PhylomeDB:Q9CAD0
ProtClustDB:CLSN2682588 Genevestigator:Q9CAD0 GermOnline:AT1G63650
GO:GO:0009957 Uniprot:Q9CAD0
Length = 596
Score = 118 (46.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 19/46 (41%), Positives = 35/46 (76%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H SE++RR+++N++ L+ ++P+ SK DK S+LD+ I+YL+ L+
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQ 451
>TAIR|locus:2152262 [details] [associations]
symbol:BIM3 "AT5G38860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000070523 EMBL:AB009048 EMBL:AJ630499 EMBL:AY568671
EMBL:BT033131 IPI:IPI00534511 RefSeq:NP_198702.2 UniGene:At.50495
ProteinModelPortal:Q9FMB6 SMR:Q9FMB6 IntAct:Q9FMB6 PRIDE:Q9FMB6
EnsemblPlants:AT5G38860.1 GeneID:833877 KEGG:ath:AT5G38860
TAIR:At5g38860 eggNOG:NOG267159 InParanoid:Q9FMB6 OMA:TETRSFC
PhylomeDB:Q9FMB6 ProtClustDB:CLSN2918639 Genevestigator:Q9FMB6
Uniprot:Q9FMB6
Length = 298
Score = 114 (45.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 30 NQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP---NASKTDKAS 86
N +++ TGR + + R + H+++E+RRR +IN++ ++L ++P N K DKAS
Sbjct: 17 NLPSRNDSSTGRRNRNSCR---SKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKAS 73
Query: 87 MLDEVIDYLKQLK 99
L EVI+Y+ L+
Sbjct: 74 FLLEVIEYIHFLQ 86
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 114 (45.2 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 8 ESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAV-HNQSERRRRDRIN 66
+S S K K ++ S + +N+ K H RR A H+ +ER RR++IN
Sbjct: 150 QSYSSGKRKEREKKVKSSTK-KNKSSVESDKLPYVHVRARRGQATDNHSLAERARREKIN 208
Query: 67 QKMKALQKLVPNASKTD-KASMLDEVIDYLKQLK 99
+MK LQ+LVP K A +LDE+I++++ L+
Sbjct: 209 ARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQ 242
>UNIPROTKB|F1P6K0 [details] [associations]
symbol:USF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055088 "lipid homeostasis" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0007595 "lactation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000432 "positive regulation of transcription
from RNA polymerase II promoter by glucose" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0043565 GO:GO:0003705 GO:GO:0055088
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0007595 GO:GO:0000432
GeneTree:ENSGT00390000004498 OMA:MVGESAR EMBL:AAEX03001016
EMBL:AAEX03001017 ProteinModelPortal:F1P6K0
Ensembl:ENSCAFT00000037592 Uniprot:F1P6K0
Length = 271
Score = 109 (43.4 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NA--SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P NA SKT K +L + DY
Sbjct: 154 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDY 211
Query: 95 LKQLK 99
+++L+
Sbjct: 212 IRELR 216
Score = 34 (17.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 203 LFRQQVKQNTIQQAACSPSMQSNHMQ 228
L RQQ+++ + A +Q ++++
Sbjct: 238 LLRQQIEELKNENAVLRAQLQQHNLE 263
>TAIR|locus:2062230 [details] [associations]
symbol:AT2G22760 "AT2G22760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
EMBL:AF488563 EMBL:DQ446550 EMBL:DQ653016 IPI:IPI00530407
PIR:E84616 RefSeq:NP_179861.2 UniGene:At.39393
ProteinModelPortal:Q1PF16 SMR:Q1PF16 IntAct:Q1PF16 PRIDE:Q1PF16
EnsemblPlants:AT2G22760.1 GeneID:816806 KEGG:ath:AT2G22760
TAIR:At2g22760 eggNOG:NOG292366 InParanoid:Q1PF16 OMA:GCMINIL
PhylomeDB:Q1PF16 ProtClustDB:CLSN2690866 Genevestigator:Q1PF16
Uniprot:Q1PF16
Length = 295
Score = 113 (44.8 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 42 SHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
SH ++ A H +ER+RR+++++K AL L+P K DK ++LD+ I +KQL+
Sbjct: 108 SHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISRMKQLQ 165
>TAIR|locus:2141573 [details] [associations]
symbol:FBH2 "AT4G09180" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL161514 HOGENOM:HOG000095218 ProtClustDB:CLSN2679906
EMBL:AF488613 EMBL:BT010423 EMBL:AK230384 IPI:IPI00545642
PIR:B85093 RefSeq:NP_192657.1 UniGene:At.33710
ProteinModelPortal:Q9M0R0 SMR:Q9M0R0 PaxDb:Q9M0R0 PRIDE:Q9M0R0
EnsemblPlants:AT4G09180.1 GeneID:826499 KEGG:ath:AT4G09180
TAIR:At4g09180 eggNOG:NOG277140 InParanoid:Q9M0R0 OMA:MENLMED
PhylomeDB:Q9M0R0 Genevestigator:Q9M0R0 Uniprot:Q9M0R0
Length = 262
Score = 112 (44.5 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 46 KRRRTAAVHNQS--ERRRRDRINQKMKALQKLVPNASK-TDKASMLDEVIDYLKQLK 99
+ +R A H +S ER RR RI+ +++ LQ+LVPN K T+ A ML+E ++Y+K L+
Sbjct: 185 RAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQ 241
>UNIPROTKB|Q84LF9 [details] [associations]
symbol:RERJ1 "Transcription Factor" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P01106 EMBL:AB040744
ProteinModelPortal:Q84LF9 Gramene:Q84LF9 Genevestigator:Q84LF9
Uniprot:Q84LF9
Length = 310
Score = 113 (44.8 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 20/43 (46%), Positives = 35/43 (81%)
Query: 58 ERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKA 100
ER RR ++N+K+ AL+ +VPN +K DKAS++ + I+Y+++L+A
Sbjct: 98 ERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQA 140
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 115 (45.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H SERRRR+++N+ L+ L+P+ K DKAS+L E I YLK L+
Sbjct: 379 HVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVLE 424
>UNIPROTKB|Q6YI47 [details] [associations]
symbol:USF2 "Upstream stimulatory factor 2" species:9606
"Homo sapiens" [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P22415
EMBL:AD000684 HOVERGEN:HBG004346 HOGENOM:HOG000294174
UniGene:Hs.454534 HGNC:HGNC:12594 ChiTaRS:USF2 EMBL:AY147880
IPI:IPI00432448 SMR:Q6YI47 STRING:Q6YI47 Ensembl:ENST00000379134
UCSC:uc002nyt.1 Uniprot:Q6YI47
Length = 215
Score = 110 (43.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQ 73
+T+T + + + + K + + + R A HN+ ERRRRD+IN + L
Sbjct: 69 RTETNGGQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLS 128
Query: 74 KLVP--NA--SKT--DKASMLDEVIDYLKQLK 99
K++P NA SKT K +L + DY+++L+
Sbjct: 129 KIIPDCNADNSKTGASKGGILSKACDYIRELR 160
>UNIPROTKB|E1BP66 [details] [associations]
symbol:LOC527932 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0021858 "GABAergic neuron differentiation in
basal ganglia" evidence=IEA] [GO:0010259 "multicellular organismal
aging" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0001967 "suckling behavior"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003650
InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527 PROSITE:PS50888
PROSITE:PS51054 SMART:SM00353 GO:GO:0003677 GO:GO:0001967
GO:GO:0007417 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
GO:GO:0000122 GO:GO:0009791 GO:GO:0035264 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010259 GeneTree:ENSGT00700000104168
OMA:PVSHKVI GO:GO:0021858 EMBL:DAAA02060186 IPI:IPI00706660
RefSeq:XP_003584202.1 RefSeq:XP_003587998.1
Ensembl:ENSBTAT00000019570 GeneID:527932 KEGG:bta:527932
Uniprot:E1BP66
Length = 242
Score = 100 (40.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 46 KRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA------SKTDKASMLDEVIDYLKQL 98
+R+RT H E+RRRDRIN+ + L K VP A K +KA +L+ + YL+ L
Sbjct: 7 ERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRAL 65
Score = 44 (20.5 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 172 YSPAASVTLPDP---YYAFLAQSMNVE 195
Y P+A V LP P + AFLA ++
Sbjct: 190 YLPSAPVPLPSPAPQHSAFLAPGQGLD 216
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 113 (44.8 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 29 ENQDEDHETKTGRSHS-SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASM 87
+ DE + T R+ S+ + A H +ER+RR+++ Q+ AL LVP K DKAS+
Sbjct: 127 QKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASV 186
Query: 88 LDEVIDYLKQLK 99
L + + ++K L+
Sbjct: 187 LGDALKHIKYLQ 198
>TAIR|locus:2042556 [details] [associations]
symbol:AT2G31210 "AT2G31210" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC006593 Gene3D:4.10.280.10
SUPFAM:SSF47459 eggNOG:NOG254981 HOGENOM:HOG000083787
ProtClustDB:CLSN2716481 EMBL:AJ519809 EMBL:AK118441 EMBL:BT009675
IPI:IPI00540344 PIR:H84717 RefSeq:NP_180679.2 UniGene:At.38250
ProteinModelPortal:Q8GX46 SMR:Q8GX46 EnsemblPlants:AT2G31210.1
GeneID:817677 KEGG:ath:AT2G31210 TAIR:At2g31210 InParanoid:Q8GX46
OMA:ERERRCH PhylomeDB:Q8GX46 Genevestigator:Q8GX46 Uniprot:Q8GX46
Length = 428
Score = 114 (45.2 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 10 LKSLKTKTTDEDSASHGRSENQDEDHETKTGR-SHSSKRRRTAAVHNQ---SERRRRDRI 65
L + T TT + S+ EN + ++ S +R+ N+ +ER RR +
Sbjct: 167 LLGIDTNTTTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKPFTTERERRCHL 226
Query: 66 NQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
N++ +AL+ L+P+ SK D+AS+L + IDY+ +L+
Sbjct: 227 NERYEALKLLIPSPSKGDRASILQDGIDYINELR 260
>TAIR|locus:2156015 [details] [associations]
symbol:RSL1 "AT5G37800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006063 ProtClustDB:CLSN2681768 EMBL:AB016873
IPI:IPI00523734 RefSeq:NP_198596.1 UniGene:At.55195
ProteinModelPortal:Q9FJ00 SMR:Q9FJ00 EnsemblPlants:AT5G37800.1
GeneID:833758 KEGG:ath:AT5G37800 TAIR:At5g37800 eggNOG:NOG303056
InParanoid:Q9FJ00 OMA:MDFNASS PhylomeDB:Q9FJ00
Genevestigator:Q9FJ00 Uniprot:Q9FJ00
Length = 307
Score = 112 (44.5 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 29 ENQDEDHETKTGRSHSSKRRRTAAVHN-QS--ERRRRDRINQKMKALQKLVPNASKTDKA 85
EN + +G + K + T + + QS + RR+RI++++K LQ+LVPN +K D
Sbjct: 184 ENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLV 243
Query: 86 SMLDEVIDYLKQLK 99
+ML++ I Y+K L+
Sbjct: 244 TMLEKAIGYVKFLQ 257
>UNIPROTKB|E9PPV4 [details] [associations]
symbol:ARNTL "Aryl hydrocarbon receptor nuclear
translocator-like protein 1" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50888
SMART:SM00353 GO:GO:0005737 GO:GO:0003700 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC016884 EMBL:AC022878
HGNC:HGNC:701 IPI:IPI00978797 ProteinModelPortal:E9PPV4 SMR:E9PPV4
Ensembl:ENST00000530357 ArrayExpress:E9PPV4 Bgee:E9PPV4
Uniprot:E9PPV4
Length = 141
Score = 100 (40.3 bits), Expect = 0.00010, P = 0.00010
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 29 ENQDEDHETKTGR----SHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NAS-- 80
E+ D D + GR H + + H+Q E+RRRD++N + L LVP NA
Sbjct: 5 ESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR 64
Query: 81 KTDKASMLDEVIDYLKQLK 99
K DK ++L + ++K L+
Sbjct: 65 KLDKLTVLRMAVQHMKTLR 83
>TAIR|locus:2103560 [details] [associations]
symbol:AT3G56770 "AT3G56770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010200 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL390921 HOGENOM:HOG000006083 ProtClustDB:CLSN2683662
IPI:IPI00540753 PIR:T51265 RefSeq:NP_191236.1 UniGene:At.53958
ProteinModelPortal:Q9LET0 SMR:Q9LET0 EnsemblPlants:AT3G56770.1
GeneID:824844 KEGG:ath:AT3G56770 TAIR:At3g56770 eggNOG:NOG237033
InParanoid:Q9LET0 OMA:RRIIFKV PhylomeDB:Q9LET0
Genevestigator:Q9LET0 Uniprot:Q9LET0
Length = 230
Score = 109 (43.4 bits), Expect = 0.00012, P = 0.00012
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H ++ER+RR RIN + L+KL+ SKTDK+++L +V+ +K+LK
Sbjct: 49 HKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELK 94
>UNIPROTKB|F6RQY3 [details] [associations]
symbol:USF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00390000004498
OMA:MVGESAR EMBL:DAAA02046935 IPI:IPI00708145
Ensembl:ENSBTAT00000022650 Uniprot:F6RQY3
Length = 339
Score = 109 (43.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NA--SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P NA SKT K +L + DY
Sbjct: 222 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDY 279
Query: 95 LKQLK 99
+++L+
Sbjct: 280 IRELR 284
Score = 34 (17.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 203 LFRQQVKQNTIQQAACSPSMQSNHMQ 228
L RQQ+++ + A +Q ++++
Sbjct: 306 LLRQQIEELKNENAVLRAQLQQHNLE 331
>TAIR|locus:2042486 [details] [associations]
symbol:AT2G31220 "AT2G31220" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC006593 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT005711 EMBL:BT008608 EMBL:AK228592
EMBL:AF251695 IPI:IPI00521500 PIR:A84718 RefSeq:NP_180680.2
UniGene:At.28314 ProteinModelPortal:Q84TK1 SMR:Q84TK1
EnsemblPlants:AT2G31220.1 GeneID:817679 KEGG:ath:AT2G31220
TAIR:At2g31220 eggNOG:NOG254981 HOGENOM:HOG000083787
InParanoid:Q84TK1 OMA:NTKICEG PhylomeDB:Q84TK1
ProtClustDB:CLSN2716481 Genevestigator:Q84TK1 Uniprot:Q84TK1
Length = 458
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 24 SHGRSENQD-EDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKT 82
++G EN+ E + T + S++ RT+ +ER RR N + L+ L+PN +K
Sbjct: 221 NNGGFENEILEFNNGVTRKGRGSRKSRTSP----TERERRVHFNDRFFDLKNLIPNPTKI 276
Query: 83 DKASMLDEVIDYLKQL 98
D+AS++ E IDY+K+L
Sbjct: 277 DRASIVGEAIDYIKEL 292
>UNIPROTKB|F1RM77 [details] [associations]
symbol:USF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055088 "lipid homeostasis" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0043425 "bHLH
transcription factor binding" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0007595 "lactation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0000432 "positive
regulation of transcription from RNA polymerase II promoter by
glucose" evidence=IEA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0043565
GO:GO:0003705 GO:GO:0055088 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0007595 GO:GO:0000432 GeneTree:ENSGT00390000004498 KO:K09106
CTD:7392 OMA:MVGESAR EMBL:CU694505 RefSeq:XP_003127089.1
UniGene:Ssc.20441 Ensembl:ENSSSCT00000003187 GeneID:100515549
KEGG:ssc:100515549 Uniprot:F1RM77
Length = 346
Score = 109 (43.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NA--SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P NA SKT K +L + DY
Sbjct: 229 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDY 286
Query: 95 LKQLK 99
+++L+
Sbjct: 287 IRELR 291
Score = 34 (17.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 203 LFRQQVKQNTIQQAACSPSMQSNHMQ 228
L RQQ+++ + A +Q ++++
Sbjct: 313 LLRQQIEELKNENAVLRAQLQQHNLE 338
>RGD|3092 [details] [associations]
symbol:Mitf "microphthalmia-associated transcription factor"
species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006461 "protein complex
assembly" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA;ISO] [GO:0030154 "cell differentiation" evidence=ISO]
[GO:0030316 "osteoclast differentiation" evidence=IEA;ISO]
[GO:0030318 "melanocyte differentiation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0042981 "regulation of apoptotic process" evidence=ISO]
[GO:0043010 "camera-type eye development" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0043234 "protein complex" evidence=IEA;ISO]
[GO:0043473 "pigmentation" evidence=ISO] [GO:0045165 "cell fate
commitment" evidence=IEA;ISO] [GO:0045670 "regulation of osteoclast
differentiation" evidence=IEA;ISO] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046849 "bone remodeling" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234
GO:GO:0006461 GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010 GO:GO:0045670
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014 GO:GO:0030318
GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286 HOGENOM:HOG000231368
OrthoDB:EOG495ZRR EMBL:AF029886 IPI:IPI00563001 UniGene:Rn.31427
ProteinModelPortal:O88368 STRING:O88368 UCSC:RGD:3092
InParanoid:O88368 ArrayExpress:O88368 Genevestigator:O88368
GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 93 (37.8 bits), Expect = 0.00014, P = 0.00014
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTD----KASMLDEVIDYLKQLK 99
+K R+ HN ERRRR IN ++K L L+P ++ D K ++L +DY+++L+
Sbjct: 16 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 74
>UNIPROTKB|O88368 [details] [associations]
symbol:Mitf "Microphthalmia-associated transcription
factor" species:10116 "Rattus norvegicus" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286
HOGENOM:HOG000231368 OrthoDB:EOG495ZRR EMBL:AF029886
IPI:IPI00563001 UniGene:Rn.31427 ProteinModelPortal:O88368
STRING:O88368 UCSC:RGD:3092 InParanoid:O88368 ArrayExpress:O88368
Genevestigator:O88368 GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 93 (37.8 bits), Expect = 0.00014, P = 0.00014
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTD----KASMLDEVIDYLKQLK 99
+K R+ HN ERRRR IN ++K L L+P ++ D K ++L +DY+++L+
Sbjct: 16 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 74
>TAIR|locus:2063203 [details] [associations]
symbol:AT2G41130 "AT2G41130" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009941
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC004261 EMBL:AK119059 EMBL:AY074639 IPI:IPI00526770
PIR:T02106 RefSeq:NP_181646.1 UniGene:At.37024
ProteinModelPortal:O80674 SMR:O80674 EnsemblPlants:AT2G41130.1
GeneID:818712 KEGG:ath:AT2G41130 TAIR:At2g41130 eggNOG:NOG239121
HOGENOM:HOG000006083 InParanoid:O80674 OMA:RERIKSH PhylomeDB:O80674
ProtClustDB:CLSN2683662 Genevestigator:O80674 Uniprot:O80674
Length = 253
Score = 109 (43.4 bits), Expect = 0.00016, P = 0.00016
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 48 RRTAAV--HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
R AA+ H ++ERRRR+RIN + L+ ++ SKTDKA++L +V+ +++LK
Sbjct: 63 RALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELK 116
>UNIPROTKB|Q6ZBI4 [details] [associations]
symbol:P0623F08.11 "Phaseolin G-box binding protein
PG1-like" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P22415 EMBL:AP003914 EMBL:AP004632
EnsemblPlants:LOC_Os08g43070.1 KEGG:dosa:Os08t0543700-00
OMA:PVISHVE Uniprot:Q6ZBI4
Length = 263
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H ++ER+RR+++N++ L+ VP S+ DKAS+L + +DY+ +L+
Sbjct: 95 HVEAERQRREKLNRRFCELRAAVPTVSRMDKASLLADAVDYIAELR 140
>UNIPROTKB|J9P200 [details] [associations]
symbol:HELT "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003650
InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527 PROSITE:PS50888
PROSITE:PS51054 SMART:SM00353 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
GeneTree:ENSGT00700000104168 OMA:PVSHKVI EMBL:AAEX03010501
Ensembl:ENSCAFT00000043273 Uniprot:J9P200
Length = 241
Score = 100 (40.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 46 KRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA------SKTDKASMLDEVIDYLKQL 98
+R+RT H E+RRRDRIN+ + L K VP A K +KA +L+ + YL+ L
Sbjct: 7 ERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRAL 65
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 164 PQSLPPPIYSPAASVTLPDP 183
P P Y P+A V LP P
Sbjct: 181 PARSPALPYLPSAPVPLPSP 200
>UNIPROTKB|Q75IG3 [details] [associations]
symbol:P0499F10.3 "Putative uncharacterized protein
P0499F10.3" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
ProtClustDB:CLSN2691249 EMBL:AC132487 RefSeq:NP_001054971.2
UniGene:Os.10063 EnsemblPlants:LOC_Os05g14010.1 GeneID:4338155
KEGG:osa:4338155 Uniprot:Q75IG3
Length = 268
Score = 109 (43.4 bits), Expect = 0.00018, P = 0.00018
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 15 TKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERR-RRDRINQKMKALQ 73
T E + H S+N E + T TG S K R A+ QS + R++R+ ++ AL
Sbjct: 80 TAAPPELRSHHHNSDNSSECNSTATG-SALKKARVQASSSAQSTLKVRKERLGDRITALH 138
Query: 74 KLVPNASKTDKASMLDEVIDYLKQL 98
++V KTD AS+L E I Y++ L
Sbjct: 139 QIVSPFGKTDTASVLQETIGYIRFL 163
>UNIPROTKB|J9P9B3 [details] [associations]
symbol:HEY2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003650
InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527 PROSITE:PS50888
PROSITE:PS51054 SMART:SM00353 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR018352 SMART:SM00511 GeneTree:ENSGT00700000104130
EMBL:AAEX03000421 Ensembl:ENSCAFT00000044703 OMA:FRECTAE
Uniprot:J9P9B3
Length = 149
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 37 TKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA------SKTDKASMLDE 90
T T + + K+RR E+RRRDRIN + L++LVP A +K +KA +L
Sbjct: 16 TTTSQIMARKKRRGII-----EKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQM 70
Query: 91 VIDYLKQLKA 100
+D+LK L+A
Sbjct: 71 TVDHLKMLQA 80
>TAIR|locus:2038510 [details] [associations]
symbol:AT1G06170 "AT1G06170" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P61244 HOGENOM:HOG000083787 ProtClustDB:CLSN2716481
EMBL:AF488619 EMBL:AC025290 EMBL:BT004262 IPI:IPI00518401
PIR:C86197 RefSeq:NP_172107.1 RefSeq:NP_973769.1 UniGene:At.42353
ProteinModelPortal:Q9LND0 SMR:Q9LND0 EnsemblPlants:AT1G06170.1
EnsemblPlants:AT1G06170.2 GeneID:837126 KEGG:ath:AT1G06170
TAIR:At1g06170 eggNOG:NOG264433 InParanoid:Q9LND0 OMA:YASAIAD
PhylomeDB:Q9LND0 Genevestigator:Q9LND0 Uniprot:Q9LND0
Length = 420
Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 6 SYESLKSLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRI 65
S+ + +T+T + + N +D + GR SK+R+ +ER RR
Sbjct: 175 SFMGVDQDQTETNQGVNLMYDEENNNLDDGLNRKGRG--SKKRKIFP----TERERRVHF 228
Query: 66 NQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98
+ L+ L+PN +K D+AS++ E IDY+K+L
Sbjct: 229 KDRFGDLKNLIPNPTKNDRASIVGEAIDYIKEL 261
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 40 GRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
G S SS A H +ER+RR++INQ+ L ++P K DKA++L + + Y+K+++
Sbjct: 179 GGSGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQ 238
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 109 (43.4 bits), Expect = 0.00023, P = 0.00023
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 39 TGRSHSSKRRRTAAV-HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQ 97
T R+ S R ++ A H +ER+RR+++ Q+ AL L+P K DKAS+L + I ++K
Sbjct: 111 TKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKY 170
Query: 98 LK 99
L+
Sbjct: 171 LQ 172
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 111 (44.1 bits), Expect = 0.00025, P = 0.00025
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
H SERRRR+++ + L+ +VP+ K DKAS+L E I YLK+L+
Sbjct: 245 HVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAYLKELE 290
>UNIPROTKB|Q5NB28 [details] [associations]
symbol:P0485D09.22 "Os01g0230200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008207 HOGENOM:HOG000005841 EMBL:AP001550
EMBL:AP001859 EMBL:AK065732 RefSeq:NP_001042492.2 UniGene:Os.38009
EnsemblPlants:LOC_Os01g13000.1 GeneID:4325885 KEGG:osa:4325885
ProtClustDB:CLSN2691249 Uniprot:Q5NB28
Length = 406
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 26 GRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERR-RRDRINQKMKALQKLVPNASKTDK 84
G+S+N E + T+TG S K R A+ QS + R++R+ ++ AL ++V KTD
Sbjct: 223 GQSDNSSECNSTETG-SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDT 281
Query: 85 ASMLDEVIDYLKQL 98
AS+L E I Y++ L
Sbjct: 282 ASVLQETIGYIRFL 295
>UNIPROTKB|G3V7S6 [details] [associations]
symbol:Hey2 "Protein Hey2" species:10116 "Rattus
norvegicus" [GO:0000983 "RNA polymerase II core promoter
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0003150 "muscular septum
morphogenesis" evidence=IEA] [GO:0003151 "outflow tract
morphogenesis" evidence=IEA] [GO:0003171 "atrioventricular valve
development" evidence=IEA] [GO:0003184 "pulmonary valve
morphogenesis" evidence=IEA] [GO:0003195 "tricuspid valve
formation" evidence=IEA] [GO:0003199 "endocardial cushion to
mesenchymal transition involved in heart valve formation"
evidence=IEA] [GO:0003214 "cardiac left ventricle morphogenesis"
evidence=IEA] [GO:0003215 "cardiac right ventricle morphogenesis"
evidence=IEA] [GO:0003222 "ventricular trabecula myocardium
morphogenesis" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007219 "Notch signaling pathway" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010460
"positive regulation of heart rate" evidence=IEA] [GO:0010667
"negative regulation of cardiac muscle cell apoptotic process"
evidence=IEA] [GO:0014898 "cardiac muscle hypertrophy in response
to stress" evidence=IEA] [GO:0016580 "Sin3 complex" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0035910 "ascending aorta morphogenesis" evidence=IEA]
[GO:0035912 "dorsal aorta morphogenesis" evidence=IEA] [GO:0035939
"microsatellite binding" evidence=IEA] [GO:0036304 "umbilical cord
morphogenesis" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0045165 "cell fate commitment"
evidence=IEA] [GO:0045607 "regulation of auditory receptor cell
differentiation" evidence=IEA] [GO:0045746 "negative regulation of
Notch signaling pathway" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0055015 "ventricular cardiac muscle cell
development" evidence=IEA] [GO:0060045 "positive regulation of
cardiac muscle cell proliferation" evidence=IEA] [GO:0060347 "heart
trabecula formation" evidence=IEA] [GO:0060413 "atrial septum
morphogenesis" evidence=IEA] [GO:0060633 "negative regulation of
transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0060716 "labyrinthine layer blood vessel
development" evidence=IEA] [GO:0060842 "arterial endothelial cell
differentiation" evidence=IEA] [GO:0060948 "cardiac vascular smooth
muscle cell development" evidence=IEA] [GO:0060977 "coronary
vasculature morphogenesis" evidence=IEA] [GO:0061156 "pulmonary
artery morphogenesis" evidence=IEA] [GO:0065004 "protein-DNA
complex assembly" evidence=IEA] [GO:0090102 "cochlea development"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] [GO:2000820 "negative
regulation of transcription from RNA polymerase II promoter
involved in smooth muscle cell differentiation" evidence=IEA]
[GO:2001212 "regulation of vasculogenesis" evidence=IEA]
InterPro:IPR003650 InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527
PROSITE:PS50888 PROSITE:PS51054 SMART:SM00353 RGD:621405
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR018352 SMART:SM00511
EMBL:CH474002 GeneTree:ENSGT00700000104130 KO:K09091 CTD:23493
OMA:TCASQRE RefSeq:NP_569101.1 UniGene:Rn.58672
Ensembl:ENSRNOT00000018718 GeneID:155430 KEGG:rno:155430
NextBio:620911 Uniprot:G3V7S6
Length = 339
Score = 109 (43.4 bits), Expect = 0.00029, P = 0.00029
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 18 TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP 77
++ + + H S + T T + + K+RR E+RRRDRIN + L++LVP
Sbjct: 22 SENNYSGHSASSVMRSNSPTTTSQIMARKKRRGII-----EKRRRDRINNSLSELRRLVP 76
Query: 78 NA------SKTDKASMLDEVIDYLKQLKA 100
A +K +KA +L +D+LK L+A
Sbjct: 77 TAFEKQGSAKLEKAEILQMTVDHLKMLQA 105
>UNIPROTKB|Q15853 [details] [associations]
symbol:USF2 "Upstream stimulatory factor 2" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0007595 "lactation" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000432 "positive regulation of
transcription from RNA polymerase II promoter by glucose"
evidence=ISS;IMP] [GO:0055088 "lipid homeostasis" evidence=ISS]
[GO:0043425 "bHLH transcription factor binding" evidence=IPI]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0000430
"regulation of transcription from RNA polymerase II promoter by
glucose" evidence=IC] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0019086 "late viral mRNA transcription" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003705 GO:GO:0055088 GO:GO:0003690
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0007595 GO:GO:0000432
EMBL:AD000684 HOVERGEN:HBG004346 KO:K09106 GO:GO:0019086
eggNOG:NOG272240 EMBL:X90824 EMBL:X90825 EMBL:X90826 EMBL:Y07661
EMBL:CR536504 EMBL:BC049821 EMBL:S50537 EMBL:M77476 IPI:IPI00020037
IPI:IPI00216376 IPI:IPI00216377 PIR:I54074 RefSeq:NP_003358.1
RefSeq:NP_997174.1 UniGene:Hs.454534 ProteinModelPortal:Q15853
SMR:Q15853 IntAct:Q15853 STRING:Q15853 PhosphoSite:Q15853
DMDM:2833271 PRIDE:Q15853 Ensembl:ENST00000222305
Ensembl:ENST00000343550 GeneID:7392 KEGG:hsa:7392 UCSC:uc002nyq.1
UCSC:uc002nyr.1 CTD:7392 GeneCards:GC19P035759 HGNC:HGNC:12594
MIM:600390 neXtProt:NX_Q15853 PharmGKB:PA37224 InParanoid:Q15853
OMA:MVGESAR OrthoDB:EOG49ZXQ1 PhylomeDB:Q15853 ChiTaRS:USF2
GenomeRNAi:7392 NextBio:28944 ArrayExpress:Q15853 Bgee:Q15853
CleanEx:HS_USF2 Genevestigator:Q15853 GermOnline:ENSG00000105698
Uniprot:Q15853
Length = 346
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NA--SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P NA SKT K +L + DY
Sbjct: 229 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDY 286
Query: 95 LKQLK 99
+++L+
Sbjct: 287 IRELR 291
>UNIPROTKB|B4DLJ1 [details] [associations]
symbol:USF2 "cDNA FLJ60670, highly similar to Upstream
stimulatory factor 2" species:9606 "Homo sapiens" [GO:0046983
"protein dimerization activity" evidence=IEA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOVERGEN:HBG004346 HOGENOM:HOG000294174
UniGene:Hs.454534 EMBL:AK297022 IPI:IPI00910387 STRING:B4DLJ1
PRIDE:B4DLJ1 UCSC:uc010xss.1 Uniprot:B4DLJ1
Length = 349
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NA--SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P NA SKT K +L + DY
Sbjct: 227 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDY 284
Query: 95 LKQLK 99
+++L+
Sbjct: 285 IRELR 289
>ZFIN|ZDB-GENE-000607-70 [details] [associations]
symbol:hey1 "hairy/enhancer-of-split related with
YRPW motif 1" species:7955 "Danio rerio" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007219
"Notch signaling pathway" evidence=IEA] InterPro:IPR003650
InterPro:IPR011598 Pfam:PF00010 Pfam:PF07527 PROSITE:PS50888
PROSITE:PS51054 SMART:SM00353 ZFIN:ZDB-GENE-000607-70 GO:GO:0007275
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0007219
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR018352
SMART:SM00511 GeneTree:ENSGT00700000104130 CTD:23462
eggNOG:NOG241271 HOGENOM:HOG000286035 KO:K09091 OMA:AHPDYSS
OrthoDB:EOG4GB77H EMBL:AJ510221 EMBL:BC095317 IPI:IPI00484198
RefSeq:NP_997726.1 UniGene:Dr.19915 ProteinModelPortal:Q8AXV6
SMR:Q8AXV6 STRING:Q8AXV6 PRIDE:Q8AXV6 Ensembl:ENSDART00000103640
GeneID:58008 KEGG:dre:58008 HOVERGEN:HBG094279 InParanoid:Q8AXV6
NextBio:20891992 ArrayExpress:Q8AXV6 Bgee:Q8AXV6 Uniprot:Q8AXV6
Length = 317
Score = 104 (41.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 19 DEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPN 78
+++SA N + + S R+R + E+RRRDRIN + L++LVP+
Sbjct: 21 EKESADENAGANSPLGSMSPSTTSQVQARKRRRGI---IEKRRRDRINNSLSELRRLVPS 77
Query: 79 A------SKTDKASMLDEVIDYLKQLKA 100
A +K +KA +L +D+LK L A
Sbjct: 78 AFEKQGSAKLEKAEILQMTVDHLKMLHA 105
Score = 36 (17.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 166 SLPPPIYSPAASVTLP 181
SLPP + P AS P
Sbjct: 252 SLPPGLTPPTASKLSP 267
>ZFIN|ZDB-GENE-041210-21 [details] [associations]
symbol:tfec "transcription factor EC" species:7955
"Danio rerio" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] InterPro:IPR011598 InterPro:IPR021802
InterPro:IPR024097 InterPro:IPR024101 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 ZFIN:ZDB-GENE-041210-21 GO:GO:0006355
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
HOGENOM:HOG000231368 HOVERGEN:HBG006768 CTD:22797 eggNOG:NOG323513
KO:K15591 OrthoDB:EOG4PC9SS PANTHER:PTHR10014:SF13 EMBL:BC116471
IPI:IPI00500966 RefSeq:NP_001025276.2 UniGene:Dr.48383
GeneID:556894 KEGG:dre:556894 NextBio:20881715 Uniprot:Q1JQ62
Length = 396
Score = 98 (39.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 32 DEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTD----KASM 87
D++H+T+ +K R+ HN ERRRR IN ++K L L+P ++ D K ++
Sbjct: 150 DQEHDTRV----LAKERQKKDNHNLIERRRRYNINYRIKELGTLIPKSNDPDMRWNKGTI 205
Query: 88 LDEVIDYLKQLK 99
L ++Y+K L+
Sbjct: 206 LKASVEYIKWLQ 217
Score = 47 (21.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 164 PQSLPPPIYSPAASVTLPD 182
PQS PPIY P V+ P+
Sbjct: 292 PQSTQPPIY-PQEGVSSPE 309
>TAIR|locus:2164605 [details] [associations]
symbol:AT5G56960 "AT5G56960" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010200 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB024035 IPI:IPI00545938 RefSeq:NP_200506.1 UniGene:At.55597
ProteinModelPortal:Q9LTS4 SMR:Q9LTS4 EnsemblPlants:AT5G56960.1
GeneID:835798 KEGG:ath:AT5G56960 TAIR:At5g56960 eggNOG:NOG254434
HOGENOM:HOG000095216 InParanoid:Q9LTS4 OMA:RENATTH PhylomeDB:Q9LTS4
ProtClustDB:CLSN2687375 Genevestigator:Q9LTS4 Uniprot:Q9LTS4
Length = 466
Score = 109 (43.4 bits), Expect = 0.00048, P = 0.00048
Identities = 32/102 (31%), Positives = 52/102 (50%)
Query: 1 MMTWAS--YESLK-SLKTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS 57
MMT A Y L + + + T E++ +HG G ++S T H S
Sbjct: 239 MMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGG-----GGRYTSGPSATQLQHMIS 293
Query: 58 ERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
ER+RR+++N+ +AL+ L+P +K DKAS+L + L L+
Sbjct: 294 ERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQ 335
>ZFIN|ZDB-GENE-050522-316 [details] [associations]
symbol:mlx "MAX-like protein X" species:7955 "Danio
rerio" [GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
ZFIN:ZDB-GENE-050522-316 Gene3D:4.10.280.10 SUPFAM:SSF47459
KO:K09113 CTD:6945 eggNOG:NOG259028 HOVERGEN:HBG019061
OrthoDB:EOG4J6RRX HOGENOM:HOG000232118 EMBL:BC095807
IPI:IPI00493599 RefSeq:NP_001019394.1 UniGene:Dr.106042
ProteinModelPortal:Q4VBH7 STRING:Q4VBH7 GeneID:554119
KEGG:dre:554119 NextBio:20880681 Uniprot:Q4VBH7
Length = 247
Score = 105 (42.0 bits), Expect = 0.00050, P = 0.00050
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 17 TTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLV 76
+T S + E+ D HET S+ +RR H Q+E++RRD I + LQ +V
Sbjct: 48 STSASSVPNTDDEDSDNRHETPYKESYKDRRRHA---HTQAEQKRRDAIKKGYDDLQSIV 104
Query: 77 PNAS----------KTDKASMLDEVIDYLKQL 98
P K KA++L + IDY++ L
Sbjct: 105 PTCQQQSDFSMATQKMSKATVLQKTIDYIQFL 136
>ZFIN|ZDB-GENE-040426-2269 [details] [associations]
symbol:usf1l "upstream transcription factor 1,
like" species:7955 "Danio rerio" [GO:0046983 "protein dimerization
activity" evidence=IEA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 ZFIN:ZDB-GENE-040426-2269
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P22415
GeneTree:ENSGT00390000004498 HOVERGEN:HBG004346
HOGENOM:HOG000294174 EMBL:BX276128 EMBL:BX942832 EMBL:BC065876
IPI:IPI00488557 RefSeq:NP_998359.1 UniGene:Dr.76786 SMR:Q6P015
STRING:Q6P015 Ensembl:ENSDART00000005263 GeneID:406475
KEGG:dre:406475 CTD:406475 InParanoid:Q6P015 NextBio:20818065
Uniprot:Q6P015
Length = 283
Score = 106 (42.4 bits), Expect = 0.00050, P = 0.00050
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 37 TKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNAS---KTD--KASMLDEV 91
+K G S+ + A HN+ ERRRRD+INQ + L K +P+ + K + K+ +L +
Sbjct: 162 SKPGSQRVSRDDKRRAQHNEVERRRRDKINQWIVQLSKTIPDCTYDAKNNQSKSGILSKA 221
Query: 92 IDYLKQLK 99
DY+++L+
Sbjct: 222 CDYIQELR 229
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 107 (42.7 bits), Expect = 0.00051, P = 0.00051
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 40 GRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
G S S+ H +ERRRR++INQ+ L ++P K DKA++L + + Y+K+L+
Sbjct: 154 GSSSSAAAPGYVQDHIIAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQ 213
>MGI|MGI:1341884 [details] [associations]
symbol:Hey2 "hairy/enhancer-of-split related with YRPW motif
2" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP;IDA] [GO:0000983 "RNA polymerase II core
promoter sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0000988 "protein binding transcription
factor activity" evidence=ISO;IDA] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=ISO] [GO:0001568
"blood vessel development" evidence=IGI] [GO:0001570
"vasculogenesis" evidence=IGI] [GO:0003150 "muscular septum
morphogenesis" evidence=IMP] [GO:0003151 "outflow tract
morphogenesis" evidence=IMP] [GO:0003171 "atrioventricular valve
development" evidence=IMP] [GO:0003184 "pulmonary valve
morphogenesis" evidence=IMP] [GO:0003186 "tricuspid valve
morphogenesis" evidence=IMP] [GO:0003195 "tricuspid valve
formation" evidence=IMP] [GO:0003199 "endocardial cushion to
mesenchymal transition involved in heart valve formation"
evidence=IGI] [GO:0003208 "cardiac ventricle morphogenesis"
evidence=IMP] [GO:0003214 "cardiac left ventricle morphogenesis"
evidence=IMP] [GO:0003215 "cardiac right ventricle morphogenesis"
evidence=IMP] [GO:0003222 "ventricular trabecula myocardium
morphogenesis" evidence=IGI] [GO:0003300 "cardiac muscle
hypertrophy" evidence=IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;ISS;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007219 "Notch signaling pathway" evidence=ISO;IDA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007389
"pattern specification process" evidence=IGI;IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0009948
"anterior/posterior axis specification" evidence=IGI] [GO:0010460
"positive regulation of heart rate" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0010667 "negative
regulation of cardiac muscle cell apoptotic process" evidence=IMP]
[GO:0014031 "mesenchymal cell development" evidence=IMP]
[GO:0014898 "cardiac muscle hypertrophy in response to stress"
evidence=IDA] [GO:0017053 "transcriptional repressor complex"
evidence=ISO] [GO:0035910 "ascending aorta morphogenesis"
evidence=IMP] [GO:0035912 "dorsal aorta morphogenesis"
evidence=IGI] [GO:0035939 "microsatellite binding"
evidence=ISO;IDA] [GO:0036304 "umbilical cord morphogenesis"
evidence=IGI] [GO:0042826 "histone deacetylase binding"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO;IDA] [GO:0045165 "cell fate commitment" evidence=IMP]
[GO:0045607 "regulation of auditory receptor cell differentiation"
evidence=IGI] [GO:0045746 "negative regulation of Notch signaling
pathway" evidence=IDA;IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;IDA;IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0055015 "ventricular cardiac muscle cell
development" evidence=IMP] [GO:0060045 "positive regulation of
cardiac muscle cell proliferation" evidence=IMP] [GO:0060317
"cardiac epithelial to mesenchymal transition" evidence=IMP]
[GO:0060347 "heart trabecula formation" evidence=IMP] [GO:0060411
"cardiac septum morphogenesis" evidence=IMP] [GO:0060412
"ventricular septum morphogenesis" evidence=IMP] [GO:0060413
"atrial septum morphogenesis" evidence=IMP] [GO:0060633 "negative
regulation of transcription initiation from RNA polymerase II
promoter" evidence=ISO] [GO:0060716 "labyrinthine layer blood
vessel development" evidence=IGI] [GO:0060840 "artery development"
evidence=IGI] [GO:0060842 "arterial endothelial cell
differentiation" evidence=IGI] [GO:0060948 "cardiac vascular smooth
muscle cell development" evidence=IMP] [GO:0060977 "coronary
vasculature morphogenesis" evidence=IMP] [GO:0061156 "pulmonary
artery morphogenesis" evidence=IMP] [GO:0061314 "Notch signaling
involved in heart development" evidence=IC] [GO:0065004
"protein-DNA complex assembly" evidence=IDA] [GO:0090102 "cochlea
development" evidence=IGI;IMP] [GO:2000678 "negative regulation of
transcription regulatory region DNA binding" evidence=ISO;IDA]
[GO:2000820 "negative regulation of transcription from RNA
polymerase II promoter involved in smooth muscle cell
differentiation" evidence=IDA] [GO:2001212 "regulation of
vasculogenesis" evidence=IGI] InterPro:IPR003650 InterPro:IPR011598
Pfam:PF00010 Pfam:PF07527 PROSITE:PS50888 PROSITE:PS51054
SMART:SM00353 MGI:MGI:1341884 GO:GO:0005737 GO:GO:0017053
GO:GO:0045944 Reactome:REACT_115202 GO:GO:0005667 GO:GO:0010460
GO:GO:0001570 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0060716
GO:GO:0014898 GO:GO:0009948 GO:GO:0003151 GO:GO:0000983
GO:GO:0045165 GO:GO:0090102 GO:GO:0055015 GO:GO:0060347
InterPro:IPR018352 SMART:SM00511 GO:GO:0060045 GO:GO:0045746
GO:GO:0003214 GO:GO:0060413 GO:GO:0061156 GO:GO:0060633
GO:GO:0000988 GO:GO:0016580 GO:GO:0061314 GO:GO:0035912
GO:GO:0003222 GeneTree:ENSGT00700000104130 GO:GO:0003199
GO:GO:0065004 GO:GO:0003195 GO:GO:0003215 GO:GO:0003150
GO:GO:2000678 GO:GO:0010667 GO:GO:0035910 HOGENOM:HOG000286035
HOVERGEN:HBG003275 KO:K09091 OrthoDB:EOG4GB77H GO:GO:0035939
GO:GO:2000820 GO:GO:0060842 GO:GO:0003184 GO:GO:2001212
GO:GO:0036304 CTD:23493 eggNOG:NOG324798 OMA:TCASQRE GO:GO:0003171
GO:GO:0060948 GO:GO:0060977 GO:GO:0045607 EMBL:AF172287
EMBL:AJ271867 EMBL:AF173902 EMBL:AF232240 EMBL:AB093589
EMBL:AK031506 EMBL:AK158000 EMBL:BC103575 EMBL:BC103576
IPI:IPI00132126 RefSeq:NP_038932.1 UniGene:Mm.103573
ProteinModelPortal:Q9QUS4 SMR:Q9QUS4 IntAct:Q9QUS4 STRING:Q9QUS4
PhosphoSite:Q9QUS4 PRIDE:Q9QUS4 Ensembl:ENSMUST00000019924
GeneID:15214 KEGG:mmu:15214 InParanoid:Q9QUS4 NextBio:287789
Bgee:Q9QUS4 CleanEx:MM_HEY2 Genevestigator:Q9QUS4
GermOnline:ENSMUSG00000019789 Uniprot:Q9QUS4
Length = 339
Score = 107 (42.7 bits), Expect = 0.00051, P = 0.00051
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 18 TDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP 77
++ + H S + T T + + K+RR E+RRRDRIN + L++LVP
Sbjct: 22 SENNYPGHATSSVMRSNSPTTTSQIMARKKRRGII-----EKRRRDRINNSLSELRRLVP 76
Query: 78 NA------SKTDKASMLDEVIDYLKQLKA 100
A +K +KA +L +D+LK L+A
Sbjct: 77 TAFEKQGSAKLEKAEILQMTVDHLKMLQA 105
>MGI|MGI:99961 [details] [associations]
symbol:Usf2 "upstream transcription factor 2" species:10090
"Mus musculus" [GO:0000432 "positive regulation of transcription
from RNA polymerase II promoter by glucose" evidence=ISO;IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007595 "lactation" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043425 "bHLH
transcription factor binding" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0055088 "lipid
homeostasis" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 MGI:MGI:99961 GO:GO:0005634
GO:GO:0003677 GO:GO:0043565 GO:GO:0003705 GO:GO:0055088
GO:GO:0003690 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0007595
GO:GO:0000432 GeneTree:ENSGT00390000004498 HOVERGEN:HBG004346
KO:K09106 eggNOG:NOG272240 HOGENOM:HOG000294174 CTD:7392
OMA:MVGESAR OrthoDB:EOG49ZXQ1 EMBL:U12283 EMBL:U12282 EMBL:U01662
EMBL:U01663 EMBL:X77602 EMBL:X77605 EMBL:BC019729 EMBL:BC082995
EMBL:AK146871 IPI:IPI00137867 IPI:IPI00223406 PIR:A55111
RefSeq:NP_035810.1 UniGene:Mm.322453 UniGene:Mm.466352
ProteinModelPortal:Q64705 SMR:Q64705 IntAct:Q64705 STRING:Q64705
PhosphoSite:Q64705 PaxDb:Q64705 PRIDE:Q64705
Ensembl:ENSMUST00000058860 Ensembl:ENSMUST00000108119 GeneID:22282
KEGG:mmu:22282 UCSC:uc009ghg.2 UCSC:uc009ghh.2 InParanoid:Q64705
NextBio:302407 Bgee:Q64705 CleanEx:MM_USF2 Genevestigator:Q64705
GermOnline:ENSMUSG00000058239 Uniprot:Q64705
Length = 346
Score = 107 (42.7 bits), Expect = 0.00053, P = 0.00053
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA----SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P+ SKT K +L + DY
Sbjct: 229 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDY 286
Query: 95 LKQLK 99
+++L+
Sbjct: 287 IRELR 291
>RGD|620975 [details] [associations]
symbol:Usf2 "upstream transcription factor 2, c-fos interacting"
species:10116 "Rattus norvegicus" [GO:0000432 "positive regulation
of transcription from RNA polymerase II promoter by glucose"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0007595 "lactation" evidence=IEA;ISO]
[GO:0042803 "protein homodimerization activity" evidence=ISO;IMP]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA;ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IMP] [GO:0046982
"protein heterodimerization activity" evidence=ISO;IMP] [GO:0055088
"lipid homeostasis" evidence=IEA;ISO] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 RGD:620975 GO:GO:0005634
GO:GO:0042803 GO:GO:0045944 GO:GO:0003700 GO:GO:0003705
GO:GO:0000978 GO:GO:0055088 GO:GO:0003690 GO:GO:0046982
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0007595 GO:GO:0000432
GeneTree:ENSGT00390000004498 HOVERGEN:HBG004346 KO:K09106
eggNOG:NOG272240 HOGENOM:HOG000294174 CTD:7392 OMA:MVGESAR
OrthoDB:EOG49ZXQ1 EMBL:AB035647 EMBL:AB035648 EMBL:AB035649
EMBL:AB035650 EMBL:AB035651 EMBL:AB047556 EMBL:X90823
IPI:IPI00190554 IPI:IPI00190556 IPI:IPI00230940 IPI:IPI00454490
IPI:IPI00656339 RefSeq:NP_112401.1 UniGene:Rn.44637
ProteinModelPortal:Q63665 SMR:Q63665 STRING:Q63665
Ensembl:ENSRNOT00000028548 Ensembl:ENSRNOT00000028550
Ensembl:ENSRNOT00000041809 GeneID:81817 KEGG:rno:81817
UCSC:RGD:620975 InParanoid:Q63665 NextBio:615725
Genevestigator:Q63665 GermOnline:ENSRNOG00000021030 Uniprot:Q63665
Length = 346
Score = 107 (42.7 bits), Expect = 0.00053, P = 0.00053
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 41 RSHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA----SKT--DKASMLDEVIDY 94
R+ +RRR A HN+ ERRRRD+IN + L K++P+ SKT K +L + DY
Sbjct: 229 RTPRDERRR--AQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDY 286
Query: 95 LKQLK 99
+++L+
Sbjct: 287 IRELR 291
>UNIPROTKB|E9PI92 [details] [associations]
symbol:ARNTL "Aryl hydrocarbon receptor nuclear
translocator-like protein 1" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50888
SMART:SM00353 GO:GO:0005737 GO:GO:0003700 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC016884 EMBL:AC022878
HGNC:HGNC:701 IPI:IPI00977551 ProteinModelPortal:E9PI92 SMR:E9PI92
Ensembl:ENST00000482049 ArrayExpress:E9PI92 Bgee:E9PI92
Uniprot:E9PI92
Length = 72
Score = 87 (35.7 bits), Expect = 0.00072, P = 0.00072
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 29 ENQDEDHETKTGR----SHSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVP--NAS-- 80
E+ D D + GR H + + H+Q E+RRRD++N + L LVP NA
Sbjct: 5 ESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR 64
Query: 81 KTDKASML 88
K DK ++L
Sbjct: 65 KLDKLTVL 72
>UNIPROTKB|H7C0J4 [details] [associations]
symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
InterPro:IPR011598 Pfam:PF00010 PRINTS:PR00785 PROSITE:PS50112
PROSITE:PS50888 SMART:SM00353 GO:GO:0005737 GO:GO:0003700
GO:GO:0005667 GO:GO:0004871 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC016738 EMBL:AC092168 EMBL:AC106891 HGNC:HGNC:7895
ChiTaRS:NPAS2 ProteinModelPortal:H7C0J4 Ensembl:ENST00000451740
Bgee:H7C0J4 Uniprot:H7C0J4
Length = 107
Score = 87 (35.7 bits), Expect = 0.00072, P = 0.00072
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 57 SERRRRDRINQKMKALQKLVP-NASKTDKASMLDEVIDYLKQ 97
SE++RRD+ N +K L ++P N K DK ++L++VI +L++
Sbjct: 1 SEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQK 42
>UNIPROTKB|Q9ASJ3 [details] [associations]
symbol:P0439B06.24 "Putative uncharacterized protein
P0439B06.24" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP002882 UniGene:Os.30617
ProteinModelPortal:Q9ASJ3 Gramene:Q9ASJ3 OMA:KAITYVK
ProtClustDB:CLSN2918925 Uniprot:Q9ASJ3
Length = 294
Score = 105 (42.0 bits), Expect = 0.00072, P = 0.00072
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 61 RRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
RR+RI++++K LQ LVPN +K D +ML++ I+Y+K L+
Sbjct: 216 RRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQ 254
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 15 TKTTDEDSASHGRSENQDEDHETKTGRSHSSKRR--RTAAVHNQSE----------RRRR 62
T T ++D S E + + + G+S + R R++ + +S RRR
Sbjct: 168 TTTMNKDETSDDSGERKKKKASSAAGKSKQASPRGCRSSQPYRKSGDSIDELFTKFHRRR 227
Query: 63 DRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLK 99
+I ++ + LQ+LVP K+++AS LD+ I Y+K L+
Sbjct: 228 FKITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQ 264
>ZFIN|ZDB-GENE-030131-8475 [details] [associations]
symbol:usf2 "upstream transcription factor 2,
c-fos interacting" species:7955 "Danio rerio" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
ZFIN:ZDB-GENE-030131-8475 Gene3D:4.10.280.10 SUPFAM:SSF47459
GeneTree:ENSGT00390000004498 EMBL:CR384101 IPI:IPI00758702
Ensembl:ENSDART00000104534 ArrayExpress:F1Q616 Bgee:F1Q616
Uniprot:F1Q616
Length = 329
Score = 105 (42.0 bits), Expect = 0.00089, P = 0.00089
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 14 KTKTTDEDSASHGRSENQDEDHETKTGRSHSSKRRRTAAVHNQS-ERRRRDRINQKMKAL 72
+T T D ++ D + R+ +RRR A HN+ ERRRRD+IN + L
Sbjct: 185 RTHTYSTDLGERETLQHSRSDWKIDGPRAPRDERRR--AQHNEEVERRRRDKINNWIVTL 242
Query: 73 QKLVPNAS----KT--DKASMLDEVIDYLKQLK 99
K++P+ + KT K +L + DY+++L+
Sbjct: 243 SKIIPDCNMDNTKTGASKGGILSKACDYIRELR 275
>UNIPROTKB|Q5MP56 [details] [associations]
symbol:BA1 "Uncharacterized protein" species:4577 "Zea
mays" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY683001 EMBL:AY683002
EMBL:BT062649 RefSeq:NP_001105271.1 UniGene:Zm.18382 IntAct:Q5MP56
GeneID:542186 KEGG:zma:542186 HOGENOM:HOG000238432 OMA:MLEQAIH
Uniprot:Q5MP56
Length = 219
Score = 102 (41.0 bits), Expect = 0.00091, P = 0.00091
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 44 SSKRRRTAA---VHNQS--ERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98
S RRR A QS R RR RI+ + + L+ LVP SK D SML++ I Y+K L
Sbjct: 42 SGARRRPGAKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFL 101
Query: 99 K 99
K
Sbjct: 102 K 102
>UNIPROTKB|C9JK03 [details] [associations]
symbol:CLOCK "Circadian locomoter output cycles protein
kaput" species:9606 "Homo sapiens" [GO:0004871 "signal transducer
activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000982
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0001190 "RNA polymerase II transcription factor binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0032922 "circadian regulation of gene expression" evidence=IEA]
InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 PRINTS:PR00785
PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
GO:GO:0005737 GO:GO:0003677 GO:GO:0009649 GO:GO:0005667
GO:GO:0004871 GO:GO:0000982 GO:GO:0032922 GO:GO:0001190
Gene3D:4.10.280.10 SUPFAM:SSF47459 HGNC:HGNC:2082 EMBL:AC069200
EMBL:AC024243 EMBL:AC110372 IPI:IPI00853422
ProteinModelPortal:C9JK03 SMR:C9JK03 STRING:C9JK03
Ensembl:ENST00000435527 HOGENOM:HOG000171249 ArrayExpress:C9JK03
Bgee:C9JK03 Uniprot:C9JK03
Length = 182
Score = 100 (40.3 bits), Expect = 0.00093, P = 0.00093
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 46 KRRRTAAVHNQSERRRRDRINQKMKALQKLVP-NASKTDKASMLDEVIDYLKQLK 99
K +R + N+SE++RRD+ N +K L ++P NA K DK+++L + ID+L++ K
Sbjct: 33 KAKRVS--RNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK 85
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.121 0.332 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 172 0.00093 108 3 10 23 0.45 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 176
No. of states in DFA: 610 (65 KB)
Total size of DFA: 199 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.06u 0.09s 28.15t Elapsed: 00:00:01
Total cpu time: 28.07u 0.09s 28.16t Elapsed: 00:00:01
Start: Thu May 9 15:03:10 2013 End: Thu May 9 15:03:11 2013
WARNINGS ISSUED: 1