Query 026943
Match_columns 230
No_of_seqs 244 out of 1231
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.5 1E-14 2.2E-19 137.0 8.4 82 43-124 226-314 (411)
2 PF00010 HLH: Helix-loop-helix 99.5 9.7E-15 2.1E-19 100.9 5.4 49 51-99 2-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.5 3.3E-14 7.2E-19 98.7 6.2 53 50-102 4-59 (60)
4 smart00353 HLH helix loop heli 99.4 2.6E-13 5.6E-18 92.5 6.2 49 55-103 1-52 (53)
5 KOG1319 bHLHZip transcription 99.2 8.3E-12 1.8E-16 106.4 4.8 68 47-114 59-133 (229)
6 KOG4304 Transcriptional repres 99.1 3E-11 6.5E-16 107.8 4.5 56 48-103 30-93 (250)
7 KOG2483 Upstream transcription 98.8 1.4E-08 3.1E-13 89.7 6.8 73 51-123 60-135 (232)
8 KOG3561 Aryl-hydrocarbon recep 98.7 1.2E-08 2.7E-13 103.0 5.8 51 51-101 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.7 2.2E-08 4.7E-13 101.8 5.5 62 51-112 277-339 (953)
10 KOG3960 Myogenic helix-loop-he 98.2 3.4E-06 7.3E-11 75.2 7.6 57 54-110 122-180 (284)
11 KOG0561 bHLH transcription fac 98.1 5.8E-06 1.3E-10 75.4 5.9 57 47-103 57-115 (373)
12 KOG4029 Transcription factor H 98.0 6.1E-06 1.3E-10 72.4 4.4 56 51-106 110-169 (228)
13 KOG3910 Helix loop helix trans 97.8 1.9E-05 4.1E-10 76.1 4.7 56 50-105 526-585 (632)
14 PLN03217 transcription factor 97.6 0.00012 2.5E-09 55.5 5.6 48 62-109 19-72 (93)
15 KOG4447 Transcription factor T 96.7 0.00088 1.9E-08 56.0 1.9 50 51-100 79-130 (173)
16 KOG3898 Transcription factor N 95.2 0.02 4.4E-07 51.4 3.6 50 51-100 73-125 (254)
17 KOG3560 Aryl-hydrocarbon recep 93.7 0.062 1.4E-06 53.1 3.7 39 58-96 33-75 (712)
18 KOG4395 Transcription factor A 93.2 0.37 8.1E-06 43.5 7.3 52 51-102 175-229 (285)
19 KOG3558 Hypoxia-inducible fact 91.9 0.32 6.9E-06 49.3 5.8 47 52-98 48-98 (768)
20 KOG3559 Transcriptional regula 90.7 0.23 4.9E-06 47.8 3.3 42 57-98 8-53 (598)
21 KOG1924 RhoA GTPase effector D 85.8 0.81 1.8E-05 47.3 3.7 11 90-100 475-485 (1102)
22 KOG3582 Mlx interactors and re 85.5 0.11 2.5E-06 52.5 -2.4 59 51-109 652-715 (856)
23 KOG4447 Transcription factor T 64.6 4.6 0.0001 34.1 1.9 44 57-100 29-74 (173)
24 KOG4005 Transcription factor X 62.0 31 0.00068 31.2 6.8 60 44-110 53-114 (292)
25 KOG4571 Activating transcripti 55.4 55 0.0012 30.3 7.4 53 51-103 232-289 (294)
26 KOG2675 Adenylate cyclase-asso 47.7 29 0.00063 33.9 4.5 28 52-79 120-147 (480)
27 KOG1924 RhoA GTPase effector D 46.3 38 0.00083 35.7 5.3 12 83-94 455-466 (1102)
28 COG3074 Uncharacterized protei 41.4 37 0.00081 25.1 3.3 27 88-114 13-39 (79)
29 KOG3582 Mlx interactors and re 34.5 13 0.00027 38.4 -0.1 54 51-107 788-846 (856)
30 COG1076 DjlA DnaJ-domain-conta 33.6 41 0.00089 28.1 2.9 54 54-108 116-169 (174)
31 PF05687 DUF822: Plant protein 32.8 69 0.0015 26.8 3.9 28 51-78 12-43 (150)
32 PF02344 Myc-LZ: Myc leucine z 31.8 54 0.0012 20.5 2.4 17 58-74 13-29 (32)
33 PF07743 HSCB_C: HSCB C-termin 31.0 1.6E+02 0.0035 20.9 5.3 46 57-103 32-77 (78)
34 TIGR00986 3a0801s05tom22 mitoc 29.7 40 0.00088 28.1 2.1 35 64-98 50-84 (145)
35 PRK15422 septal ring assembly 29.0 68 0.0015 24.1 3.0 27 88-114 13-39 (79)
36 PF14689 SPOB_a: Sensor_kinase 28.5 2E+02 0.0044 19.9 5.9 41 59-106 17-57 (62)
37 PF06005 DUF904: Protein of un 28.0 72 0.0016 23.3 3.0 32 88-119 13-44 (72)
38 COG5129 MAK16 Nuclear protein 22.9 41 0.00089 30.3 1.0 20 43-62 274-293 (303)
39 PF04281 Tom22: Mitochondrial 22.1 78 0.0017 26.1 2.5 35 64-98 52-86 (137)
40 PF15392 Joubert: Joubert synd 20.5 3.1E+02 0.0067 25.8 6.2 51 50-100 56-111 (329)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.55 E-value=1e-14 Score=137.00 Aligned_cols=82 Identities=29% Similarity=0.560 Sum_probs=64.4
Q ss_pred CCccchhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHHHHHHHHHHH---hhcccCcc
Q 026943 43 HSSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQLKAQVQMMNN---VRNNMPQM 115 (230)
Q Consensus 43 ~~~k~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~Lq~~~~~Le~---~~~~~~~~ 115 (230)
...|.+++|+.||++|||||++||++|++|..|||.| .|.+|..||..+|+||+.|++..++..+ ....+...
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 4556777799999999999999999999999999998 3677999999999999999998774443 23333343
Q ss_pred cccCchhhh
Q 026943 116 NMMMPLGMQ 124 (230)
Q Consensus 116 ~~~lp~~~Q 124 (230)
+..|...++
T Consensus 306 n~~L~~rie 314 (411)
T KOG1318|consen 306 NQELALRIE 314 (411)
T ss_pred HHHHHHHHH
Confidence 444544444
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.54 E-value=9.7e-15 Score=100.87 Aligned_cols=49 Identities=51% Similarity=0.813 Sum_probs=46.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC-----CcchhhhhHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLK 99 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-----~K~dKasIL~~aI~YIk~Lq 99 (230)
+..||..||+||++||++|.+|+.+||.+ .|++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999987 68999999999999999997
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.51 E-value=3.3e-14 Score=98.74 Aligned_cols=53 Identities=40% Similarity=0.686 Sum_probs=49.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHH
Q 026943 50 TAAVHNQSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 50 ~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
.+..|+..||+||++||++|.+|+.+||.. .|++|++||..||+||++|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999988 78999999999999999999875
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.43 E-value=2.6e-13 Score=92.48 Aligned_cols=49 Identities=41% Similarity=0.700 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCcchhhhhHHHHHHHHHHHHHHHH
Q 026943 55 NQSERRRRDRINQKMKALQKLVPN---ASKTDKASMLDEVIDYLKQLKAQVQ 103 (230)
Q Consensus 55 n~~ER~RR~~In~~~~~Lr~lvP~---~~K~dKasIL~~aI~YIk~Lq~~~~ 103 (230)
|..||+||++||++|..|+.+||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999995 5789999999999999999998875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.23 E-value=8.3e-12 Score=106.41 Aligned_cols=68 Identities=31% Similarity=0.514 Sum_probs=58.8
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC-------CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026943 47 RRRTAAVHNQSERRRRDRINQKMKALQKLVPNA-------SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMPQ 114 (230)
Q Consensus 47 ~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-------~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~~ 114 (230)
+.|+|..|...|++||+.||.++..|++|||.| .|+.||.||.++|+||.+|..+...-|++...+..
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999999999976 38999999999999999999988877766555544
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=99.15 E-value=3e-11 Score=107.75 Aligned_cols=56 Identities=34% Similarity=0.524 Sum_probs=49.2
Q ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC--------CcchhhhhHHHHHHHHHHHHHHHH
Q 026943 48 RRTAAVHNQSERRRRDRINQKMKALQKLVPNA--------SKTDKASMLDEVIDYLKQLKAQVQ 103 (230)
Q Consensus 48 ~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~--------~K~dKasIL~~aI~YIk~Lq~~~~ 103 (230)
..++..|-++|||||+|||+++.+|++||+.+ .|++||.||+.||+|++.|+....
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 33467889999999999999999999999954 578999999999999999997544
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.77 E-value=1.4e-08 Score=89.68 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=60.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCCC--cch-hhhhHHHHHHHHHHHHHHHHHHHHhhcccCcccccCchhh
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNAS--KTD-KASMLDEVIDYLKQLKAQVQMMNNVRNNMPQMNMMMPLGM 123 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~~--K~d-KasIL~~aI~YIk~Lq~~~~~Le~~~~~~~~~~~~lp~~~ 123 (230)
+..||..||+||+.|++||..|+.+||..+ +.. .++||++|++||+.|+.+..+.+.+.+.+..+++.|-..+
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl 135 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARL 135 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999873 333 6999999999999999988877776666655555554444
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.73 E-value=1.2e-08 Score=102.97 Aligned_cols=51 Identities=33% Similarity=0.576 Sum_probs=48.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQLKAQ 101 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~Lq~~ 101 (230)
|++||.+|||||+++|.-|+||.+|||.| .|+||.+||++||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999988 4999999999999999999874
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.67 E-value=2.2e-08 Score=101.80 Aligned_cols=62 Identities=32% Similarity=0.533 Sum_probs=55.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA-SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNM 112 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~ 112 (230)
|.+||++|||+|..||++|.+|+++||+. .|+.|..+|.+||+||++|+..++.+...+..+
T Consensus 277 RtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 277 RTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred cchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 58999999999999999999999999987 799999999999999999999888766544433
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.24 E-value=3.4e-06 Score=75.18 Aligned_cols=57 Identities=25% Similarity=0.464 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHh-cCCCC-CcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 026943 54 HNQSERRRRDRINQKMKALQK-LVPNA-SKTDKASMLDEVIDYLKQLKAQVQMMNNVRN 110 (230)
Q Consensus 54 Hn~~ER~RR~~In~~~~~Lr~-lvP~~-~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~ 110 (230)
-.+.||||=.++|+.|++|+. -++|- .++-|+.||..||+||..||.-++++..+..
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 457899999999999999987 55655 5799999999999999999999988875443
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.08 E-value=5.8e-06 Score=75.44 Aligned_cols=57 Identities=35% Similarity=0.598 Sum_probs=50.1
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHhcCCC--CCcchhhhhHHHHHHHHHHHHHHHH
Q 026943 47 RRRTAAVHNQSERRRRDRINQKMKALQKLVPN--ASKTDKASMLDEVIDYLKQLKAQVQ 103 (230)
Q Consensus 47 ~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~--~~K~dKasIL~~aI~YIk~Lq~~~~ 103 (230)
|+-+|+.-|..||||-.-||.+|..||.|||. +.|++||.||+.+.+||..|+.+.-
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 33447888999999999999999999999996 4899999999999999999987443
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.00 E-value=6.1e-06 Score=72.36 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=50.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCC----CCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPN----ASKTDKASMLDEVIDYLKQLKAQVQMMN 106 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~----~~K~dKasIL~~aI~YIk~Lq~~~~~Le 106 (230)
+..+|..||.|-..+|..|.+||.+||. ..|++|+.+|..||.||++|+.-+..-+
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 5677888999999999999999999995 4689999999999999999997776555
No 13
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.83 E-value=1.9e-05 Score=76.13 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=47.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCCc----chhhhhHHHHHHHHHHHHHHHHHH
Q 026943 50 TAAVHNQSERRRRDRINQKMKALQKLVPNASK----TDKASMLDEVIDYLKQLKAQVQMM 105 (230)
Q Consensus 50 ~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~~K----~dKasIL~~aI~YIk~Lq~~~~~L 105 (230)
+|...|..||.|-..||+.|+||..++---.| ..|..||..||..|-.|+++|++-
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 35788999999999999999999998654333 348999999999999999999853
No 14
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.65 E-value=0.00012 Score=55.54 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCC------CcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026943 62 RDRINQKMKALQKLVPNA------SKTDKASMLDEVIDYLKQLKAQVQMMNNVR 109 (230)
Q Consensus 62 R~~In~~~~~Lr~lvP~~------~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~ 109 (230)
-+.|++.+..|+.|+|.. .|.+.+-||++|+.||+.|+.+|..|.+.-
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999953 467788899999999999999999998643
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.69 E-value=0.00088 Score=55.98 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=46.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC--CcchhhhhHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA--SKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~--~K~dKasIL~~aI~YIk~Lq~ 100 (230)
+..||+.||+|-..+|+.|..||.+||.. .|++|.--|+.|..||-+|=.
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 67899999999999999999999999976 899999999999999999864
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.17 E-value=0.02 Score=51.43 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=43.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCC---CCcchhhhhHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPN---ASKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~---~~K~dKasIL~~aI~YIk~Lq~ 100 (230)
|..=|..||+|--.+|+.|+.||.+||. ..|+.|...|..|-.||..|..
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 3445777999999999999999999994 3789999999999999999873
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.75 E-value=0.062 Score=53.08 Aligned_cols=39 Identities=41% Similarity=0.680 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHH
Q 026943 58 ERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLK 96 (230)
Q Consensus 58 ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk 96 (230)
-||-|+|+|.-++.|..|+|-- +|+||.+||.-+|.||+
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 5777999999999999999964 89999999999999986
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=93.17 E-value=0.37 Score=43.54 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=45.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
+..-|..||+|-..+|..|+.||..||.. .|++|-.-|..|-.||--|-...
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 46678999999999999999999999976 67999999999999998886444
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.88 E-value=0.32 Score=49.34 Aligned_cols=47 Identities=34% Similarity=0.498 Sum_probs=39.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHH
Q 026943 52 AVHNQSERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 52 ~~Hn~~ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~L 98 (230)
+.-.-+.|.||-+-|+-|.+|..+||-- .-+|||+|+.-||.|++-=
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence 3344568999999999999999999932 5699999999999998743
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=90.75 E-value=0.23 Score=47.84 Aligned_cols=42 Identities=40% Similarity=0.549 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHH
Q 026943 57 SERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 57 ~ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~L 98 (230)
..|.||++-|.-|-+|.+++|-. ..+||++|+.-|..|||--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 47899999999999999999954 5699999999999999853
No 21
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=85.80 E-value=0.81 Score=47.33 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 026943 90 EVIDYLKQLKA 100 (230)
Q Consensus 90 ~aI~YIk~Lq~ 100 (230)
+|.+|=|.+.+
T Consensus 475 kA~e~~kk~~k 485 (1102)
T KOG1924|consen 475 KAAELEKKFDK 485 (1102)
T ss_pred HHHHHHHHHHH
Confidence 45555444433
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=85.50 E-value=0.11 Score=52.48 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=49.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC-----CcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLKAQVQMMNNVR 109 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-----~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~ 109 (230)
...|..+|.+||.+|+-+|..|-.++-+. .|+.++.-|.++++||..++.+...+.++.
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 47899999999999999999999999876 467788889999999998887766655443
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=64.60 E-value=4.6 Score=34.10 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CcchhhhhHHHHHHHHHHHHH
Q 026943 57 SERRRRDRINQKMKALQKLVPNA--SKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 57 ~ER~RR~~In~~~~~Lr~lvP~~--~K~dKasIL~~aI~YIk~Lq~ 100 (230)
.|+.|..++++.+.-|+.|+|+. .+..+.--|..+.+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 48999999999999999999986 333333336667777776654
No 24
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.99 E-value=31 Score=31.23 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=33.8
Q ss_pred Cccchhhhhhc-cHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHH-HHHHHHHHHHHHHhhc
Q 026943 44 SSKRRRTAAVH-NQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDY-LKQLKAQVQMMNNVRN 110 (230)
Q Consensus 44 ~~k~~r~~~~H-n~~ER~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~Y-Ik~Lq~~~~~Le~~~~ 110 (230)
..|++|.|..| ..-||.-|.+++++..+--. ...-|+-+ .-++| |+.|.++++.|..++.
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQta-----RDrKKaRm--~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTA-----RDRKKARM--EEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhh-----hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556888 45678888888887654322 11112222 23455 7777777776665443
No 25
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.42 E-value=55 Score=30.30 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=31.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCCCc-----chhhhhHHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNASK-----TDKASMLDEVIDYLKQLKAQVQ 103 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~~K-----~dKasIL~~aI~YIk~Lq~~~~ 103 (230)
+...+.+--|+|++=+..+.+|-.-+=...| .+.++-|++=|.|+|.|-.++.
T Consensus 232 r~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 232 RQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555665555555555443333332 3578888888888888876554
No 26
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.69 E-value=29 Score=33.92 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=22.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCCC
Q 026943 52 AVHNQSERRRRDRINQKMKALQKLVPNA 79 (230)
Q Consensus 52 ~~Hn~~ER~RR~~In~~~~~Lr~lvP~~ 79 (230)
...+..|++|.-++=+.+.++.+-||..
T Consensus 120 eI~~fkE~nRkS~~FNhLsav~e~i~al 147 (480)
T KOG2675|consen 120 EINNFKEKNRKSPFFNHLSAVSESIPAL 147 (480)
T ss_pred HHhhhhhcccCchHHHHHHHHHhhcccc
Confidence 4556778999888888899999988865
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.30 E-value=38 Score=35.66 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHH
Q 026943 83 DKASMLDEVIDY 94 (230)
Q Consensus 83 dKasIL~~aI~Y 94 (230)
|-+.+|+..|+-
T Consensus 455 d~~~liD~~vdk 466 (1102)
T KOG1924|consen 455 DLTELIDKMVDK 466 (1102)
T ss_pred cHHHHHHHHHHH
Confidence 445555555554
No 28
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.41 E-value=37 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026943 88 LDEVIDYLKQLKAQVQMMNNVRNNMPQ 114 (230)
Q Consensus 88 L~~aI~YIk~Lq~~~~~Le~~~~~~~~ 114 (230)
+..||+-|.-||.++.+|++.++.+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 567899999999999999977765543
No 29
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=34.53 E-value=13 Score=38.38 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=44.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC-----CcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLKAQVQMMNN 107 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-----~K~dKasIL~~aI~YIk~Lq~~~~~Le~ 107 (230)
++.|.-.||++|.++.++|..|-.|+|.. .++.+++||. +.|+.++..-+.+.+
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 35577789999999999999999999954 4688999998 888999887776664
No 30
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=41 Score=28.14 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 026943 54 HNQSERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQMMNNV 108 (230)
Q Consensus 54 Hn~~ER~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~Lq~~~~~Le~~ 108 (230)
....+...+..+.....+++.++-..+ .|+++.+..-.+||+.|+.++++++..
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a 169 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEA 169 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 455567777788888888888877666 899999999999999999999988853
No 31
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=32.76 E-value=69 Score=26.85 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=18.1
Q ss_pred hhhccHHHHHHH---HHHHHHHHHHHh-cCCC
Q 026943 51 AAVHNQSERRRR---DRINQKMKALQK-LVPN 78 (230)
Q Consensus 51 ~~~Hn~~ER~RR---~~In~~~~~Lr~-lvP~ 78 (230)
+++....||+|| .+|=.+++.+++ -+|.
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~ 43 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAHGNYKLPK 43 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 466677899999 555555555555 4443
No 32
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=31.79 E-value=54 Score=20.52 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026943 58 ERRRRDRINQKMKALQK 74 (230)
Q Consensus 58 ER~RR~~In~~~~~Lr~ 74 (230)
=|+||+.++.++..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47889999999999986
No 33
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=31.05 E-value=1.6e+02 Score=20.92 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 026943 57 SERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQ 103 (230)
Q Consensus 57 ~ER~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~Lq~~~~ 103 (230)
....-..+++.++..|..++ .....++|..+-.-..|+..|...++
T Consensus 32 l~~~~~~~~~~~~~~l~~~f-~~~d~~~A~~~~~kLky~~kl~~~ik 77 (78)
T PF07743_consen 32 LKKEIEERIKELIKELAEAF-DAKDWEEAKEALRKLKYLQKLLEEIK 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677888888888887 44555566655555566666655554
No 34
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=29.72 E-value=40 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHH
Q 026943 64 RINQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 64 ~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~L 98 (230)
-|-++|.+|+++||...+..=..+...++.++|.+
T Consensus 50 Tl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred cHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999765544445555555555554
No 35
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.03 E-value=68 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026943 88 LDEVIDYLKQLKAQVQMMNNVRNNMPQ 114 (230)
Q Consensus 88 L~~aI~YIk~Lq~~~~~Le~~~~~~~~ 114 (230)
+..||+-|.-||.++.+|+..+..+..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999977655544
No 36
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.49 E-value=2e+02 Score=19.88 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 026943 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQMMN 106 (230)
Q Consensus 59 R~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~Lq~~~~~Le 106 (230)
|.-|-.+++.+..+..++- ..=.++|.+||+.+-...+.+.
T Consensus 17 R~~RHD~~NhLqvI~gllq-------lg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-------LGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 5557778888999988764 2234678999999998888764
No 37
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.96 E-value=72 Score=23.30 Aligned_cols=32 Identities=9% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcccccC
Q 026943 88 LDEVIDYLKQLKAQVQMMNNVRNNMPQMNMMM 119 (230)
Q Consensus 88 L~~aI~YIk~Lq~~~~~Le~~~~~~~~~~~~l 119 (230)
+..||+-|..|+.++.+|+..+..+...+..|
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46789999999999999987755554433333
No 38
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=22.90 E-value=41 Score=30.31 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=11.9
Q ss_pred CCccchhhhhhccHHHHHHH
Q 026943 43 HSSKRRRTAAVHNQSERRRR 62 (230)
Q Consensus 43 ~~~k~~r~~~~Hn~~ER~RR 62 (230)
..++++++.-+|..-|..|-
T Consensus 274 ~~a~ksrkp~i~ieyeqe~e 293 (303)
T COG5129 274 DDAKKSRKPHIHIEYEQERE 293 (303)
T ss_pred CchhhccCCceeeehHhhhh
Confidence 45555555566776666553
No 39
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=22.11 E-value=78 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHH
Q 026943 64 RINQKMKALQKLVPNASKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 64 ~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~L 98 (230)
-|-++|.+|+++||...+..=..++..+..++|.+
T Consensus 52 Tl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~ 86 (137)
T PF04281_consen 52 TLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSL 86 (137)
T ss_pred cHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46677899999999765444444444555555544
No 40
>PF15392 Joubert: Joubert syndrome-associated
Probab=20.48 E-value=3.1e+02 Score=25.82 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=31.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcC-----CCCCcchhhhhHHHHHHHHHHHHH
Q 026943 50 TAAVHNQSERRRRDRINQKMKALQKLV-----PNASKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 50 ~~~~Hn~~ER~RR~~In~~~~~Lr~lv-----P~~~K~dKasIL~~aI~YIk~Lq~ 100 (230)
+++....+.|+||++|-+.+..|..+. |-|.+.+-..+-.+-|.-.+.++.
T Consensus 56 RrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~ 111 (329)
T PF15392_consen 56 RREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKE 111 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 368888999999999998887776543 455444433333444444443333
Done!