Query 026943
Match_columns 230
No_of_seqs 244 out of 1231
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 2E-18 6.9E-23 136.6 7.4 82 44-125 21-109 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 2.7E-18 9.2E-23 127.8 6.5 67 47-113 3-70 (82)
3 4h10_B Circadian locomoter out 99.7 2.3E-17 8E-22 119.8 6.2 61 46-106 4-65 (71)
4 1hlo_A Protein (transcription 99.7 1.1E-16 3.7E-21 118.3 6.0 64 50-113 12-77 (80)
5 1an4_A Protein (upstream stimu 99.7 2.2E-17 7.4E-22 117.4 2.0 52 51-102 6-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.6 4.3E-17 1.5E-21 119.0 3.4 56 45-100 4-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.6 1E-16 3.4E-21 119.1 4.6 67 51-117 3-71 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.1E-16 3.8E-21 120.6 4.6 67 51-117 7-76 (88)
9 1a0a_A BHLH, protein (phosphat 99.6 4.3E-17 1.5E-21 115.8 2.1 52 51-102 3-61 (63)
10 1nlw_A MAD protein, MAX dimeri 99.6 9.1E-16 3.1E-20 113.7 5.3 64 51-114 2-68 (80)
11 3u5v_A Protein MAX, transcript 99.6 1.1E-15 3.6E-20 112.4 4.1 56 51-106 6-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 2.6E-12 8.9E-17 92.4 6.3 52 51-102 13-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 3.3E-12 1.1E-16 89.7 5.8 52 51-102 3-57 (60)
14 4ath_A MITF, microphthalmia-as 99.2 4.6E-12 1.6E-16 94.2 4.6 64 62-125 4-74 (83)
15 4f3l_A Mclock, circadian locom 99.2 1.3E-11 4.5E-16 112.0 5.9 55 47-101 9-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 3.5E-11 1.2E-15 110.5 5.4 57 45-101 8-68 (387)
17 2lfh_A DNA-binding protein inh 99.0 1.6E-10 5.5E-15 82.8 1.9 45 56-100 20-67 (68)
18 4aya_A DNA-binding protein inh 98.5 2.2E-07 7.5E-12 70.9 6.2 47 58-104 33-82 (97)
19 3muj_A Transcription factor CO 76.7 3.2 0.00011 33.1 4.7 36 63-98 94-133 (138)
20 2wt7_A Proto-oncogene protein 53.2 29 0.00098 23.4 5.2 22 91-112 21-42 (63)
21 3iot_A Maltose-binding protein 45.7 3.8 0.00013 36.8 -0.4 8 89-96 274-281 (449)
22 3he4_B Synzip5; heterodimeric 34.9 36 0.0012 21.4 3.0 25 88-112 5-29 (46)
23 1pd7_B MAD1; PAH2, SIN3, eukar 34.9 41 0.0014 19.3 2.9 19 82-100 2-20 (26)
24 1gd2_E Transcription factor PA 34.5 12 0.00042 26.3 0.9 20 92-111 28-47 (70)
25 2jee_A YIIU; FTSZ, septum, coi 31.5 36 0.0012 24.6 3.0 27 88-114 15-41 (81)
26 1dh3_A Transcription factor CR 29.4 30 0.001 22.9 2.1 20 93-112 22-41 (55)
27 1qb3_A Cyclin-dependent kinase 28.6 25 0.00084 28.3 1.8 20 182-201 94-113 (150)
28 1p3q_Q VPS9P, vacuolar protein 27.4 53 0.0018 21.9 3.1 26 56-81 3-28 (54)
29 1pd3_A Nonstructural protein N 23.3 54 0.0018 21.9 2.4 41 60-100 6-47 (58)
30 3iot_A Maltose-binding protein 22.7 18 0.00061 32.3 -0.0 8 91-98 191-198 (449)
31 1fpo_A HSC20, chaperone protei 21.9 1.7E+02 0.0058 23.2 5.8 48 59-107 119-166 (171)
32 3hho_A CO-chaperone protein HS 21.8 1.9E+02 0.0064 23.0 6.0 49 58-107 122-170 (174)
33 1xkm_B Distinctin chain B; por 21.2 1.1E+02 0.0038 17.0 3.1 20 85-104 3-22 (26)
34 1gk7_A Vimentin; intermediate 21.1 1.3E+02 0.0045 18.5 3.8 21 89-109 16-36 (39)
35 2oqq_A Transcription factor HY 21.0 54 0.0018 20.9 2.0 19 94-112 4-22 (42)
36 3fx7_A Putative uncharacterize 20.2 2.6E+02 0.0091 20.5 6.5 21 89-109 66-86 (94)
37 2er8_A Regulatory protein Leu3 20.1 78 0.0027 20.9 2.9 20 92-111 48-67 (72)
38 3mlp_A Transcription factor CO 20.1 18 0.00062 33.2 -0.5 36 63-98 320-359 (402)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.74 E-value=2e-18 Score=136.61 Aligned_cols=82 Identities=29% Similarity=0.524 Sum_probs=52.1
Q ss_pred CccchhhhhhccHHHHHHHHHHHHHHHHHHhcCCCCC----cchhhhhHHHHHHHHHHHHHHHHHHHHhh---cccCccc
Q 026943 44 SSKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNAS----KTDKASMLDEVIDYLKQLKAQVQMMNNVR---NNMPQMN 116 (230)
Q Consensus 44 ~~k~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~~----K~dKasIL~~aI~YIk~Lq~~~~~Le~~~---~~~~~~~ 116 (230)
..|+.+++.+||++||+||++||++|.+|++|||++. |++|++||++||+||++|+.+++.|+... ..+...+
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n 100 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHAN 100 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556789999999999999999999999999884 67899999999999999999999998643 3455666
Q ss_pred ccCchhhhh
Q 026943 117 MMMPLGMQQ 125 (230)
Q Consensus 117 ~~lp~~~Q~ 125 (230)
..|...+|+
T Consensus 101 ~~L~~riqe 109 (118)
T 4ati_A 101 RHLLLRVQE 109 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 677766663
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.73 E-value=2.7e-18 Score=127.76 Aligned_cols=67 Identities=30% Similarity=0.470 Sum_probs=60.4
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 026943 47 RRRTAAVHNQSERRRRDRINQKMKALQKLVPNA-SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMP 113 (230)
Q Consensus 47 ~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~ 113 (230)
+..++..|+.+||+||++||++|.+|+++||++ .|+||++||.+||+||++|+.+++.|+.+...+.
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999999999999998 8999999999999999999999999997664443
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=119.78 Aligned_cols=61 Identities=31% Similarity=0.559 Sum_probs=54.8
Q ss_pred cchhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHHHHHHHH
Q 026943 46 KRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA-SKTDKASMLDEVIDYLKQLKAQVQMMN 106 (230)
Q Consensus 46 k~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-~K~dKasIL~~aI~YIk~Lq~~~~~Le 106 (230)
|.+.++.+||++||+||++||++|.+|+.|||.+ .|+||++||++||+||+.|+.++.=||
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455679999999999999999999999999975 699999999999999999998877654
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=1.1e-16 Score=118.30 Aligned_cols=64 Identities=27% Similarity=0.510 Sum_probs=58.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCC--CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 026943 50 TAAVHNQSERRRRDRINQKMKALQKLVPNA--SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMP 113 (230)
Q Consensus 50 ~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~--~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~ 113 (230)
.+..||.+||+||.+||++|.+|+.+||.+ .|++|++||..||+||++|+.++++|+.+...+.
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999986 6999999999999999999999999997665543
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=2.2e-17 Score=117.40 Aligned_cols=52 Identities=38% Similarity=0.677 Sum_probs=48.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCCC------cchhhhhHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNAS------KTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~~------K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
+.+||.+||+||++||++|.+|+.|||.+. |++|++||++||+||++|+.++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999885 7899999999999999999764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.65 E-value=4.3e-17 Score=119.02 Aligned_cols=56 Identities=32% Similarity=0.559 Sum_probs=50.8
Q ss_pred ccchhhhhhccHHHHHHHHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHHHH
Q 026943 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 45 ~k~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~Lq~ 100 (230)
.|.++++.+|+.+||+||++||++|.+|+.|||.| .|+|||+||+.||+||+.|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 35566689999999999999999999999999987 699999999999999999973
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.64 E-value=1e-16 Score=119.07 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=60.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC--CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA--SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMPQMNM 117 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~--~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~~~~~ 117 (230)
+.+||.+||+||++||++|.+|+.+||.+ .|++|++||.+||+||++|+.++++|+.+...+...+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999985 79999999999999999999999999977666655333
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=1.1e-16 Score=120.59 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=59.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMPQMNM 117 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~~~~~ 117 (230)
+..||.+||+||++||++|..|+++||.+ .|.+|++||.+||+||++|+.+++.|..+...+...+.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999975 59999999999999999999999998876555544333
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.64 E-value=4.3e-17 Score=115.78 Aligned_cols=52 Identities=23% Similarity=0.506 Sum_probs=47.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC-------CcchhhhhHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA-------SKTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~-------~K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
+.+|+++||+||++||.+|.+|+.|||++ .|.+||+||+.||+||+.|++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999965 46779999999999999999765
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=9.1e-16 Score=113.75 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=57.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQVQMMNNVRNNMPQ 114 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~~~Le~~~~~~~~ 114 (230)
+..||.+||+||+.||++|..|+++||.+ .|.+|++||.+|++||+.|+.+++.|..+...+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999965 68999999999999999999999999977655544
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.57 E-value=1.1e-15 Score=112.41 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=49.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCC---CCcc-hhhhhHHHHHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPN---ASKT-DKASMLDEVIDYLKQLKAQVQMMN 106 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~---~~K~-dKasIL~~aI~YIk~Lq~~~~~Le 106 (230)
+.+||.+||+||+.||++|.+|+.+||. ..|. +|++||.+||+||++|+.++++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999995 3565 799999999999999999999887
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.31 E-value=2.6e-12 Score=92.43 Aligned_cols=52 Identities=23% Similarity=0.445 Sum_probs=48.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC--CcchhhhhHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA--SKTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~--~K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
+..||..||+|+..||+.|..||.+||.. .|++|+.||..||+||.+|+..+
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999975 68999999999999999999654
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.29 E-value=3.3e-12 Score=89.74 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=47.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHH
Q 026943 51 AAVHNQSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQV 102 (230)
Q Consensus 51 ~~~Hn~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~ 102 (230)
+..||..||+|+..||+.|..||.+||.. .|++|+.||..||+||.+|+..+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999975 58999999999999999999754
No 14
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.24 E-value=4.6e-12 Score=94.18 Aligned_cols=64 Identities=25% Similarity=0.509 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHHHHHHHHHHHh---hcccCcccccCchhhhh
Q 026943 62 RDRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQLKAQVQMMNNV---RNNMPQMNMMMPLGMQQ 125 (230)
Q Consensus 62 R~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~Lq~~~~~Le~~---~~~~~~~~~~lp~~~Q~ 125 (230)
|.+||++|.+|++|||.+ .|.+|++||.+||+||++|+.+++.+..+ ...++..|..|+..+|+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 899999999999999976 46899999999999999999988866653 33455666677777774
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.19 E-value=1.3e-11 Score=112.00 Aligned_cols=55 Identities=36% Similarity=0.633 Sum_probs=42.5
Q ss_pred chhhhhhccHHHHHHHHHHHHHHHHHHhcCC-CCCcchhhhhHHHHHHHHHHHHHH
Q 026943 47 RRRTAAVHNQSERRRRDRINQKMKALQKLVP-NASKTDKASMLDEVIDYLKQLKAQ 101 (230)
Q Consensus 47 ~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP-~~~K~dKasIL~~aI~YIk~Lq~~ 101 (230)
...++..||.+||+||++||+.|.+|+.||| +..|+||++||..||+|||.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3344688999999999999999999999999 557999999999999999999854
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.12 E-value=3.5e-11 Score=110.54 Aligned_cols=57 Identities=32% Similarity=0.536 Sum_probs=49.6
Q ss_pred ccchhhhhhccHHHHHHHHHHHHHHHHHHhcCC----CCCcchhhhhHHHHHHHHHHHHHH
Q 026943 45 SKRRRTAAVHNQSERRRRDRINQKMKALQKLVP----NASKTDKASMLDEVIDYLKQLKAQ 101 (230)
Q Consensus 45 ~k~~r~~~~Hn~~ER~RR~~In~~~~~Lr~lvP----~~~K~dKasIL~~aI~YIk~Lq~~ 101 (230)
.|.+.++.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 344555789999999999999999999999999 558999999999999999999843
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.96 E-value=1.6e-10 Score=82.84 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHH
Q 026943 56 QSERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 56 ~~ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~ 100 (230)
..||+|+..||++|..||.+||.. .|++|..||..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 349999999999999999999975 689999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.48 E-value=2.2e-07 Score=70.89 Aligned_cols=47 Identities=28% Similarity=0.412 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---CcchhhhhHHHHHHHHHHHHHHHHH
Q 026943 58 ERRRRDRINQKMKALQKLVPNA---SKTDKASMLDEVIDYLKQLKAQVQM 104 (230)
Q Consensus 58 ER~RR~~In~~~~~Lr~lvP~~---~K~dKasIL~~aI~YIk~Lq~~~~~ 104 (230)
||.|-..||+.|..||.+||.. .|++|..+|..||+||.+|+.-+..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778889999999999999965 6899999999999999999976654
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=76.74 E-value=3.2 Score=33.12 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHH
Q 026943 63 DRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 63 ~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~L 98 (230)
-.|..+|..|.++||.- .++-|-.||+.|.++++.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 46899999999999954 6788999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.20 E-value=29 Score=23.43 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 026943 91 VIDYLKQLKAQVQMMNNVRNNM 112 (230)
Q Consensus 91 aI~YIk~Lq~~~~~Le~~~~~~ 112 (230)
-.+|+..|+.++..|+..+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666554444
No 21
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=45.71 E-value=3.8 Score=36.77 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 026943 89 DEVIDYLK 96 (230)
Q Consensus 89 ~~aI~YIk 96 (230)
+.|.+||+
T Consensus 274 e~A~~fl~ 281 (449)
T 3iot_A 274 ELAKEFLE 281 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
No 22
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.92 E-value=36 Score=21.44 Aligned_cols=25 Identities=16% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 026943 88 LDEVIDYLKQLKAQVQMMNNVRNNM 112 (230)
Q Consensus 88 L~~aI~YIk~Lq~~~~~Le~~~~~~ 112 (230)
+.+--+||+.|++++.+|+..++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4456689999999999988765444
No 23
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=34.86 E-value=41 Score=19.26 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=15.3
Q ss_pred chhhhhHHHHHHHHHHHHH
Q 026943 82 TDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 82 ~dKasIL~~aI~YIk~Lq~ 100 (230)
+.+..+|-+|.+||...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4577889999999987765
No 24
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.55 E-value=12 Score=26.25 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 026943 92 IDYLKQLKAQVQMMNNVRNN 111 (230)
Q Consensus 92 I~YIk~Lq~~~~~Le~~~~~ 111 (230)
-.||+.|+.++..|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666544433
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.52 E-value=36 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026943 88 LDEVIDYLKQLKAQVQMMNNVRNNMPQ 114 (230)
Q Consensus 88 L~~aI~YIk~Lq~~~~~Le~~~~~~~~ 114 (230)
+..||+-|.-||.++.+|+..+..+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999877766544
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.45 E-value=30 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 026943 93 DYLKQLKAQVQMMNNVRNNM 112 (230)
Q Consensus 93 ~YIk~Lq~~~~~Le~~~~~~ 112 (230)
.||..|+.+|..|+.++..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888665444
No 27
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=28.64 E-value=25 Score=28.30 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=9.0
Q ss_pred ChhhhhhcccchhHHHhHHH
Q 026943 182 DPYYAFLAQSMNVELYNKMA 201 (230)
Q Consensus 182 dp~~~~~~qp~~~~~~~~~~ 201 (230)
+|.--+|-.|.+.+..-+++
T Consensus 94 EPhILLFRRpl~~~~~~~~a 113 (150)
T 1qb3_A 94 EPHILLFKRPLNYEAELRAA 113 (150)
T ss_dssp CTTEEEEEEETTHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchh
Confidence 44333444555444444444
No 28
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.39 E-value=53 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Q 026943 56 QSERRRRDRINQKMKALQKLVPNASK 81 (230)
Q Consensus 56 ~~ER~RR~~In~~~~~Lr~lvP~~~K 81 (230)
.++|-+|...++.+.+|+.+.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46788899999999999999998644
No 29
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=23.28 E-value=54 Score=21.94 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHH
Q 026943 60 RRRDRINQKMKALQKLVPNA-SKTDKASMLDEVIDYLKQLKA 100 (230)
Q Consensus 60 ~RR~~In~~~~~Lr~lvP~~-~K~dKasIL~~aI~YIk~Lq~ 100 (230)
+-|+.+..+|.++|-||-.+ +++-+..---+-|.|++.||.
T Consensus 6 kwReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQL 47 (58)
T 1pd3_A 6 KWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 45788889999999888755 222222222345666666664
No 30
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=22.72 E-value=18 Score=32.31 Aligned_cols=8 Identities=25% Similarity=0.493 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 026943 91 VIDYLKQL 98 (230)
Q Consensus 91 aI~YIk~L 98 (230)
+++|++.|
T Consensus 191 al~~~~~l 198 (449)
T 3iot_A 191 GLTFLVDL 198 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=21.85 E-value=1.7e+02 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 026943 59 RRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQMMNN 107 (230)
Q Consensus 59 R~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~Lq~~~~~Le~ 107 (230)
..-+.+|..+...|...+ .....+.|..+-.-..|+..|+.+++.++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~kl~y~~kl~~~i~~~~~ 166 (171)
T 1fpo_A 119 KRVKKMFDTRHQLMVEQL-DNETWDAAADTCRKLRFLDKLRSSAEQLEE 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777766 334567777777778888888988888874
No 32
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=21.78 E-value=1.9e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 026943 58 ERRRRDRINQKMKALQKLVPNASKTDKASMLDEVIDYLKQLKAQVQMMNN 107 (230)
Q Consensus 58 ER~RR~~In~~~~~Lr~lvP~~~K~dKasIL~~aI~YIk~Lq~~~~~Le~ 107 (230)
...-+.++++++..|...+=. ...+.|..+-.-..|+..|+.+++.+++
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~-~d~~~A~~~~~kL~f~~kl~~~i~~~~~ 170 (174)
T 3hho_A 122 DTKVTAMQRHYLAQLQGQLAQ-SEWLAAADQIRKLKFIAKLKNEVERVED 170 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777776632 4567787777788899999999998874
No 33
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.21 E-value=1.1e+02 Score=17.03 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 026943 85 ASMLDEVIDYLKQLKAQVQM 104 (230)
Q Consensus 85 asIL~~aI~YIk~Lq~~~~~ 104 (230)
.+-|-+|-.|+..|.++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 34567788888888876653
No 34
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.13 E-value=1.3e+02 Score=18.46 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026943 89 DEVIDYLKQLKAQVQMMNNVR 109 (230)
Q Consensus 89 ~~aI~YIk~Lq~~~~~Le~~~ 109 (230)
..-|+-|++|+.+++.|+...
T Consensus 16 AsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346777889999999998643
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.01 E-value=54 Score=20.85 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 026943 94 YLKQLKAQVQMMNNVRNNM 112 (230)
Q Consensus 94 YIk~Lq~~~~~Le~~~~~~ 112 (230)
|+-.|+.+++.|+..+..+
T Consensus 4 Yl~eLE~r~k~le~~naeL 22 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSEL 22 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6667777777666544443
No 36
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.16 E-value=2.6e+02 Score=20.51 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026943 89 DEVIDYLKQLKAQVQMMNNVR 109 (230)
Q Consensus 89 ~~aI~YIk~Lq~~~~~Le~~~ 109 (230)
+.|-+||-+|..+++-|++..
T Consensus 66 e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 66 EAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHhHHHHHHHHHhHHHH
Confidence 467789999999999998643
No 37
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.10 E-value=78 Score=20.92 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 026943 92 IDYLKQLKAQVQMMNNVRNN 111 (230)
Q Consensus 92 I~YIk~Lq~~~~~Le~~~~~ 111 (230)
-.||..|+.++..|+..-..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888999999998864433
No 38
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=20.07 E-value=18 Score=33.16 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCC----CcchhhhhHHHHHHHHHHH
Q 026943 63 DRINQKMKALQKLVPNA----SKTDKASMLDEVIDYLKQL 98 (230)
Q Consensus 63 ~~In~~~~~Lr~lvP~~----~K~dKasIL~~aI~YIk~L 98 (230)
-.|..+|..|.++||.- .++-|-.||+.|.+++..|
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 56889999999999953 6788999999999988776
Done!