BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026944
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 328 bits (841), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 179/207 (86%), Gaps = 2/207 (0%)
Query: 25 AARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAP 84
+++FDFFYFV QWPGSYCDT +SCCYPTTGKPAADFGIHGLWPN NDG+YPSNCDPN+P
Sbjct: 3 GSKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSP 62
Query: 85 FDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLK 143
+DQSQISDL SSM +NWPTLACPSG+G TFWSHEWEKHGTC+ESVL NQH YF+ AL+LK
Sbjct: 63 YDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLK 122
Query: 144 NQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVD 203
NQI+LL L+ A I PDG SY L +I++AIK A G++PWI+CNVD+SGNSQLYQ+Y+CVD
Sbjct: 123 NQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVD 182
Query: 204 TSASNFINCPVFPNGKKCGSQIEFPPF 230
S S+ I CP+FP G KCG+ IEFP F
Sbjct: 183 GSGSSLIECPIFPGG-KCGTSIEFPTF 208
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 327 bits (837), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 153/205 (74%), Positives = 174/205 (84%), Gaps = 1/205 (0%)
Query: 26 ARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPF 85
A++FDFFYFV QWPGSYCDT +SCCYP TGKPA+DFGIHGLWPN NDGSYPSNCD N+P+
Sbjct: 5 AQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPY 64
Query: 86 DQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQ 145
DQSQ+SDL S M +NWPTLACPSG G FWSHEWEKHGTC+E+V +QH YF+ AL+LKNQ
Sbjct: 65 DQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQ 124
Query: 146 INLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTS 205
INLL+ L+ AGI PDG YSL SIK+AI+ A G++P IECNVDESGNSQLYQIY+CVD S
Sbjct: 125 INLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVDGS 184
Query: 206 ASNFINCPVFPNGKKCGSQIEFPPF 230
SN I CP+FP G KCGS IEFP F
Sbjct: 185 GSNLIECPIFPRG-KCGSSIEFPTF 208
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 289 bits (739), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 130/206 (63%), Positives = 162/206 (78%), Gaps = 3/206 (1%)
Query: 26 ARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPF 85
A++FDFFYFV QWP SYCDT +SCCYPTTGKP DF IHGLWPNY +G +P NCD +
Sbjct: 5 AQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSL 64
Query: 86 DQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQ 145
D+S+ISDL S+M KNWP+LACPS +G+ FWSHEW KHGTC S L + YFQ AL+ + +
Sbjct: 65 DESEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTC--SALGERAYFQAALDFRKK 122
Query: 146 INLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDT 204
NLL+ L+ A I P +G Y+LESIK AI+E G SP+IECNVD GN Q+YQ+YLCVD
Sbjct: 123 SNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDK 182
Query: 205 SASNFINCPVFPNGKKCGSQIEFPPF 230
+A++FI+CP+FP+G+ CGS+IEFPPF
Sbjct: 183 TATDFIDCPIFPHGRGCGSKIEFPPF 208
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
FD F+FV QWP + C KS P +G F IHGLWP G+ +NC P +PFD +
Sbjct: 2 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 57
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINL 148
+IS L+S + WPT+ N FWSHEW KHGTCSES NQ YF+ A++++N ++
Sbjct: 58 KISHLQSQLNTLWPTVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 115
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSAS 207
+ ALR P+G + S ++IK +K G P + C D ++ S L ++ C S
Sbjct: 116 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 175
Query: 208 NFINC 212
I+C
Sbjct: 176 TLIDC 180
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
D F+FV QWP + C KS P +G F IHGLWP G+ +NC P +PFD +
Sbjct: 1 MDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINL 148
+IS L+S + WPT+ N FWSHEW KHGTCSES NQ YF+ A++++N ++
Sbjct: 57 KISHLQSQLNTLWPTVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSAS 207
+ ALR P+G + S ++IK +K G P + C D ++ S L Q+ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 208 NFINC 212
I+C
Sbjct: 175 TLIDC 179
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
FD F+FV QWP + C KS P +G F IHGLWP G+ +NC P +PFD +
Sbjct: 1 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINL 148
+IS L+S + WP + N FWSHEW KHGTCSES NQ YF+ A++++N ++
Sbjct: 57 KISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSAS 207
+ ALR P+G + S ++IK +K G P + C D ++ S L Q+ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 208 NFINC 212
I+C
Sbjct: 175 TLIDC 179
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
D F+FV QWP + C KS P +G F IHGLWP G+ +NC P +PFD +
Sbjct: 1 MDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINL 148
+IS L+S + WP++ N FWSHEW KHGTCSES NQ YF+ A++++N ++
Sbjct: 57 KISHLQSQLNTLWPSVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSAS 207
+ ALR P+G + S ++IK +K G P + C D ++ S L ++ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 174
Query: 208 NFINC 212
I+C
Sbjct: 175 TLIDC 179
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 7/185 (3%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
FD F+FV QWP + C KS P +G F IHGLWP G+ +NC P +PFD +
Sbjct: 8 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 63
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINL 148
+IS L+S + WP + N FWSHEW KHGTCSES NQ F+ A++++N ++
Sbjct: 64 KISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDI 121
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSAS 207
+ ALR P+G + S ++IK +K G P + C D ++ S L ++ C S
Sbjct: 122 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 181
Query: 208 NFINC 212
I+C
Sbjct: 182 TLIDC 186
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium
pdb|1JY5|B Chain B, Rnase-Related Protein From Calystegia Sepium
Length = 212
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 21/213 (9%)
Query: 27 RNFDFFYFVLQWPGSYCDTAKSCCYPTTG----KPAADFGIHGLWPNYNDGSYPSNCDPN 82
+ FD+F L W G+ C + K C PT + F I GLWP+Y+DG++PS C+
Sbjct: 3 KEFDYFTLALTWSGTECLSVKDSC-PTNACSRSEVETGFTIKGLWPDYDDGTWPSCCE-G 60
Query: 83 APFDQSQISDLRSSMLKNWPTLACPSGNG-----ITFWSHEWEKHGTCSESVL-NQHQYF 136
A +DQ++IS L + + K WP+ +CPS + + ++EW KHGTCS VL NQ++YF
Sbjct: 61 AKYDQNEISILSNDLSKYWPSYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYF 120
Query: 137 QTALNLKNQINLLQALRTAGIVPDGSS-YSLESIKDAIKEASGFSPWIECNVDESGNSQL 195
T L L + N+ + L +G +P ++ Y +E I AI+ A +P ++C D +
Sbjct: 121 STTLMLYFKYNISEILSESGYLPSNTAEYKVEGIMSAIQSALRVTPVVKCKSD-----AV 175
Query: 196 YQIYLCVDTSASNFINCPVFPNGKKCGSQIEFP 228
Q+ +C D + CP C S + P
Sbjct: 176 EQVQICFDKTL-QLQECP--STASTCPSLVSLP 205
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
pdb|1IOO|B Chain B, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
Length = 196
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 28 NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQ 87
+F++ VL WP S+C A C +F IHGLWP+ N + NC P +
Sbjct: 1 DFEYLQLVLTWPASFC-YANHC----ERIAPNNFTIHGLWPD-NVKTRLHNCKPKPTYSY 54
Query: 88 SQISDLRSSMLKNWPTLACPSGNGIT---FWSHEWEKHGTCSESVLNQHQYFQTALNLKN 144
+ + + K+W L G T W +++ KHG+C + NQ+ YF AL LK+
Sbjct: 55 F-TGKMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKD 113
Query: 145 QINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDT 204
+ +LL+ L+T I+P GSSY+ + I DAIK S +P I+C G +LY+I +C
Sbjct: 114 KFDLLRTLQTHRIIP-GSSYTFQDIFDAIKTVSQENPDIKCAEVTKGTPELYEIGICFTP 172
Query: 205 SASNFINCP 213
+A + CP
Sbjct: 173 NADSMFRCP 181
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 27 RNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAAD----FGIHGLWPNYNDGSYPSNCDPN 82
R FD+F LQW G+ C + +CC P G AD F IHGL P Y+ G PS C
Sbjct: 3 REFDYFILALQWAGTSCRSGGACC-PYNGCCKADSPTQFTIHGLRPEYSGGERPSCCT-G 60
Query: 83 APFDQSQISDLRSSMLKNWPTLACP-----SGNGITFWSHEWEKHGTCSESVLN-QHQYF 136
FD +I +++ WPT C + W ++EKHGTC+ V+ + YF
Sbjct: 61 GSFDPDEIMPFFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYF 120
Query: 137 QTALNLKNQINLLQALRTAGIVPDGSS-YSLESIKDAIKEASGFSPWIECNVDESGNSQL 195
+ L L + N+ +AL AGIV S Y L+ I A++ A G P + C DE G Q
Sbjct: 121 KKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRC--DEEGLVQ- 177
Query: 196 YQIYLCVD 203
++ LC D
Sbjct: 178 -KLSLCFD 184
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 32 FYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQIS 91
V WP + C+ ++ C P + IHGLWP+ ++G C+ + PF+ +I
Sbjct: 13 LIMVQHWPETVCEKIQNDCR----DPPDYWTIHGLWPDKSEG-----CNRSWPFNLEEIK 63
Query: 92 DLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESV--LN-QHQYFQTALNLKNQINL 148
DL M WP + N FW HEWEKHGTC+ V LN Q +YF +L L +++L
Sbjct: 64 DLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDL 123
Query: 149 LQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIEC---NVDESGNSQLYQIYLCVDTS 205
L GI P + Y + KDA+ G P I+C + DE + + QI LC+
Sbjct: 124 NSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT-IGQIELCLTKQ 182
Query: 206 ASNFINC 212
NC
Sbjct: 183 DQQLQNC 189
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS 88
+D+F F Q+ + C++ ++ C P F +HGLWP+ G PS C +
Sbjct: 1 YDYFQFTQQYQLAVCNSNRTLC---KDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKRE 57
Query: 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALNL--KNQ 145
++ + + ++ WP + + N + FW EW KHG+C ++ N++ YF+T + + +
Sbjct: 58 KLLEHQLEII--WPNVFDRTKNNL-FWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKK 114
Query: 146 INLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTS 205
N+ + L A I PDG +L I++AI+ + + ++L +I LC D S
Sbjct: 115 QNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKS 174
Query: 206 ASNFINCP 213
+FI+CP
Sbjct: 175 GEHFIDCP 182
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 40/214 (18%)
Query: 46 AKSCCYPTTG------------KPAADFGIHGLWPNYNDGSY-PSN-CDPN------APF 85
+ +CC P G P F +HGLWP+ G+Y PS CD N A
Sbjct: 16 SDTCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASV 75
Query: 86 DQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCS-----------ESVLNQHQ 134
+S+ S L +SML WP+ GN FWSHEW KHGTC E +
Sbjct: 76 IKSKDSSLYNSMLTYWPS---NQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVD 132
Query: 135 YFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQ 194
YFQ A++L++Q N+ +A + GI P G +Y+ ++ AI+ G I+C+ +
Sbjct: 133 YFQKAMDLRSQYNVYKAFSSNGITP-GGTYTATEMQSAIESYFGAKAKIDCSSGTLSDVA 191
Query: 195 LYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFP 228
LY DT ++ G C +E+P
Sbjct: 192 LYFYVRGRDT----YVITDALSTG-SCSGDVEYP 220
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 51 YPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPF-------DQSQISDLRSSMLKNWPT 103
Y + P+ + IHGLWP+ DG+Y CD + + + ++L S M + WP
Sbjct: 38 YDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPD 97
Query: 104 LACPSGNGITFWSHEWEKHGTCSESV--------LNQHQ---YFQTALNLKNQINLLQAL 152
+ +FW HEW KHGTC ++ Q + +FQ ++L ++ AL
Sbjct: 98 YE-GADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTAL 156
Query: 153 RTAGIVP-DGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSA--SN 208
AGI P + ++Y L I+DA+ G+ P++ C ++ SQLY Y V SA
Sbjct: 157 SDAGITPSEDATYKLSDIEDALAAIHDGYPPYVGC--EDGALSQLY-YYFNVKGSAIGGT 213
Query: 209 FINCPVFPNGKKCGSQIEFPP 229
++ + S I++PP
Sbjct: 214 YVASERLEDSNCKDSGIKYPP 234
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 51 YPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPF-------DQSQISDLRSSMLKNWPT 103
Y + P+ + IHGLWP+ DG+Y CD + + + ++L S M + WP
Sbjct: 38 YDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPD 97
Query: 104 LACPSGNGITFWSHEWEKHGTCSESV--------LNQHQ---YFQTALNLKNQINLLQAL 152
+ +FW HEW KHGTC ++ Q + +FQ ++L ++ AL
Sbjct: 98 YE-GADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTAL 156
Query: 153 RTAGIVP-DGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSA--SN 208
AGI P + ++Y L I+DA+ G+ P++ C ++ SQLY Y V SA
Sbjct: 157 SDAGITPSEDATYKLSDIEDALAAIHDGYPPYVGC--EDGALSQLY-YYFNVKGSAIGGT 213
Query: 209 FINCPVFPNGKKCGSQIEFPP 229
++ + S I++PP
Sbjct: 214 YVASERLEDSNCKDSGIKYPP 234
>pdb|2FM9|A Chain A, Structure Of Salmonella Sipa Residues 48-264
Length = 215
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 161 GSSYSLESIKDAIKEASGFSPWI 183
G+ Y+ + IKD +KE S F PW+
Sbjct: 72 GAEYTAQIIKDGLKEKSAFGPWL 94
>pdb|2FM8|C Chain C, Crystal Structure Of The Salmonella Secretion Chaperone
Invb In Complex With Sipa
Length = 240
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 161 GSSYSLESIKDAIKEASGFSPWI 183
G+ Y+ + IKD +KE S F PW+
Sbjct: 98 GAEYTAQIIKDGLKEKSAFGPWL 120
>pdb|3SZK|F Chain F, Crystal Structure Of Human Methaemoglobin Complexed With
The First Neat Domain Of Isdh From Staphylococcus Aureus
pdb|3SZK|C Chain C, Crystal Structure Of Human Methaemoglobin Complexed With
The First Neat Domain Of Isdh From Staphylococcus Aureus
pdb|3OVU|B Chain B, Crystal Structure Of Human Alpha-Haemoglobin Complexed
With Ahsp And The First Neat Domain Of Isdh From
Staphylococcus Aureus
pdb|3S48|A Chain A, Human Alpha-Haemoglobin Complexed With The First Neat
Domain Of Isdh From Staphylococcus Aureus
pdb|3S48|B Chain B, Human Alpha-Haemoglobin Complexed With The First Neat
Domain Of Isdh From Staphylococcus Aureus
Length = 164
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 156 GIVPDGSSYSLESIKDAIKEAS------GFSPWIECN---VDESGNSQLYQIYLCVD 203
G+VP GS + ES+KDAIK+ + P + N +D++ +Q Y + D
Sbjct: 12 GLVPRGSHMADESLKDAIKDPALENKEHDIGPREQVNFQLLDKNNETQYYHFFSIKD 68
>pdb|3D8H|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
pdb|3D8H|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
Length = 267
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 156 GIVPDGSSYSLESIKDAIKE---ASGFSPWIECNVDESGNSQ 194
G+VP GS+Y L I+ E + F+ W + ++ E G S+
Sbjct: 13 GLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSE 54
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 80 DPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSE 127
+P+ P D +S+ S ++ W + P+GN IT + WE+ SE
Sbjct: 594 NPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITHYLVFWERQAEDSE 640
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 80 DPNAPFDQSQISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSE 127
+P+ P D +S+ S ++ W + P+GN IT + WE+ SE
Sbjct: 594 NPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITHYLVFWERQAEDSE 640
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 131 NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDES 190
+H + Q ++ +Q + L + R A V D S++ K+A + + F+ N DE+
Sbjct: 403 ERHAFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDEN 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,341,704
Number of Sequences: 62578
Number of extensions: 306153
Number of successful extensions: 780
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 27
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)