Query 026944
Match_columns 230
No_of_seqs 131 out of 1213
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1642 Ribonuclease, T2 famil 100.0 5E-62 1.1E-66 406.7 19.4 204 25-230 28-240 (263)
2 cd01061 RNase_T2_euk Ribonucle 100.0 8.9E-58 1.9E-62 379.6 20.1 193 29-227 1-195 (195)
3 cd00374 RNase_T2 Ribonuclease 100.0 7.3E-56 1.6E-60 367.4 19.4 193 29-227 1-195 (195)
4 PF00445 Ribonuclease_T2: Ribo 100.0 6.8E-56 1.5E-60 366.5 12.6 181 29-214 1-189 (189)
5 cd01062 RNase_T2_prok Ribonucl 100.0 1.3E-48 2.7E-53 322.0 15.6 172 29-223 1-179 (184)
6 PRK10095 ribonuclease I; Provi 100.0 5.5E-43 1.2E-47 301.2 17.7 188 26-229 31-265 (268)
7 COG3719 Rna Ribonuclease I [Tr 100.0 4.4E-40 9.5E-45 274.4 12.6 179 28-229 52-247 (249)
8 PF07172 GRP: Glycine rich pro 81.5 1.5 3.2E-05 32.3 2.6 25 1-25 1-25 (95)
9 PF01328 Peroxidase_2: Peroxid 75.9 2.4 5.2E-05 38.0 2.8 36 147-182 51-87 (317)
10 PF10281 Ish1: Putative stress 63.9 14 0.00031 22.0 3.6 30 147-176 8-37 (38)
11 PF08255 Leader_Trp: Trp-opero 60.4 4.6 0.0001 19.0 0.7 10 59-68 3-12 (14)
12 TIGR03595 Obg_CgtA_exten Obg f 50.6 14 0.0003 25.3 2.2 31 131-165 31-61 (69)
13 cd03171 SORL_Dfx_classI Supero 48.4 6.3 0.00014 27.8 0.2 8 60-67 70-77 (78)
14 cd00524 SORL Superoxide reduct 48.3 6.5 0.00014 28.0 0.2 8 60-67 78-85 (86)
15 PF00446 GnRH: Gonadotropin-re 46.5 8 0.00017 16.5 0.3 7 114-120 2-8 (10)
16 PF09269 DUF1967: Domain of un 44.8 29 0.00063 23.7 3.0 31 131-165 31-61 (69)
17 cd03172 SORL_classII Superoxid 42.7 8.5 0.00018 28.6 0.1 9 60-68 93-101 (104)
18 TIGR00332 neela_ferrous desulf 42.7 8.3 0.00018 28.9 0.0 10 60-69 91-100 (107)
19 PF06217 GAGA_bind: GAGA bindi 40.2 14 0.00031 32.7 1.1 31 89-124 264-294 (301)
20 TIGR03853 matur_matur probable 39.4 64 0.0014 22.7 4.1 36 147-187 6-42 (77)
21 PF01880 Desulfoferrodox: Desu 37.0 8.6 0.00019 28.2 -0.6 8 61-68 87-94 (96)
22 PF08100 Dimerisation: Dimeris 35.2 49 0.0011 21.2 2.8 32 139-174 2-33 (51)
23 PF10678 DUF2492: Protein of u 35.2 75 0.0016 22.5 3.9 36 147-187 8-44 (78)
24 COG2033 Desulfoferrodoxin [Ene 34.8 15 0.00034 28.1 0.4 10 60-69 112-121 (126)
25 TIGR00320 dfx_rbo desulfoferro 33.9 14 0.00031 28.5 0.1 9 60-68 115-123 (125)
26 COG5416 Uncharacterized integr 28.4 57 0.0012 24.0 2.5 16 24-39 45-60 (98)
27 PF08766 DEK_C: DEK C terminal 26.1 77 0.0017 20.3 2.6 28 148-179 9-36 (54)
28 PF04202 Mfp-3: Foot protein 3 25.6 59 0.0013 22.2 2.0 17 10-26 7-23 (71)
29 PF05399 EVI2A: Ectropic viral 25.2 61 0.0013 27.4 2.4 16 57-72 175-190 (227)
30 PF08790 zf-LYAR: LYAR-type C2 22.7 40 0.00086 19.0 0.6 16 112-127 8-23 (28)
31 PF08368 FAST_2: FAST kinase-l 22.3 3E+02 0.0064 19.6 5.5 41 165-206 49-89 (93)
32 cd07884 RHD-n_Relish N-termina 21.6 45 0.00098 26.8 1.0 36 151-204 99-134 (159)
33 PF15284 PAGK: Phage-encoded v 21.3 99 0.0021 20.8 2.4 15 1-15 1-15 (61)
34 PF00165 HTH_AraC: Bacterial r 21.3 1.1E+02 0.0024 18.0 2.5 31 144-181 7-37 (42)
No 1
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=100.00 E-value=5e-62 Score=406.69 Aligned_cols=204 Identities=58% Similarity=1.166 Sum_probs=182.7
Q ss_pred cCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCC
Q 026944 25 AARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTL 104 (230)
Q Consensus 25 ~~~~fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~ 104 (230)
...+||||+|+++||.++|...+.||.+..|.++ .||||||||++..|+||++|+++.+||.++|++++.+|+.+||++
T Consensus 28 ~~~~fd~f~fvqqWP~~~Cd~~~~~C~~~~G~~a-~ftIHGLWP~~~~G~~P~~Cn~s~~Fd~~~isdl~~~L~~~Wp~L 106 (263)
T KOG1642|consen 28 SEEDFDFFYFVQQWPGAYCDSQRTCCYPPSGKPA-DFTIHGLWPDYNHGSWPQNCNRSSQFDDSKISDLEDSLEKEWPDL 106 (263)
T ss_pred ccCCCCEEEEEEecCCccccCCccccCCCCCCcc-ceEEeeeccCCCCCCCcccCCCcccCChHHccchhhhHHhhcccc
Confidence 3478999999999999999998899988776555 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC--cccccccccceeecccCcC---ChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCC
Q 026944 105 ACPSGNG--ITFWSHEWEKHGTCSESVL---NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGF 179 (230)
Q Consensus 105 ~~~~~~~--~~fw~hEW~KHGtC~~~~~---~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~ 179 (230)
++++.++ ++||+|||+|||||+.+++ +|.+||+++++|++++|+..+|.++||.|+.+.|++++|++||++++|.
T Consensus 107 ~~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~ 186 (263)
T KOG1642|consen 107 YCPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGK 186 (263)
T ss_pred ccCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCC
Confidence 9876433 8899999999999999887 9999999999999999999999999999988899999999999999999
Q ss_pred CceEEeeeCCCCC-ceEEEEEEEEeCC--CCceecCCC-CCCCCCCCCCeecCCC
Q 026944 180 SPWIECNVDESGN-SQLYQIYLCVDTS--ASNFINCPV-FPNGKKCGSQIEFPPF 230 (230)
Q Consensus 180 ~p~l~C~~~~~~~-~~L~Ev~iC~d~~--~~~~i~Cp~-~~~~~~C~~~i~~p~f 230 (230)
+|.+.|.++.+++ .+|.||++|+.|+ +...+.||. .+++. |+..+.||.|
T Consensus 187 ~p~I~C~rd~~~nv~~l~qI~lCl~kd~~~~d~~~~~~~~P~g~-~~~~~~~ps~ 240 (263)
T KOG1642|consen 187 TPGIECLRDSKHNVSQLGQIRLCLLKDFSPRDCIECPTEFPRGS-CPTFIQFPSF 240 (263)
T ss_pred CCceEeccCcccCceEeeeEEEEeecCcccccccCCCCcccCCc-ccccccCCCC
Confidence 9999999987777 7899999999655 334455552 23455 9999999976
No 2
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=100.00 E-value=8.9e-58 Score=379.62 Aligned_cols=193 Identities=47% Similarity=1.020 Sum_probs=171.4
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCCccCC
Q 026944 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPS 108 (230)
Q Consensus 29 fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~~~~~ 108 (230)
||||+||++|||+||...+.+|.+ .+..+||||||||++.++.+|++|+.+.+||...+++++++|+.+||++..+.
T Consensus 1 ~d~~~l~~~Wpps~C~~~~~~c~~---~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~L~~~Wp~l~~~~ 77 (195)
T cd01061 1 FDYLQLVLQWPDTYCSTGPCCCRP---PPPDSFTIHGLWPDNCSGTYPQFCDSSSNFDSILISDLLNELNKYWPDLTGPK 77 (195)
T ss_pred CCeEEEEEECCCCcccCCCCcCCC---CCcccCEEeccCCCCCCCCCCCCCCCcccCCcccchhhhHHHhccCCCCcCCC
Confidence 799999999999999887666743 35689999999999998889999997788999888999999999999996433
Q ss_pred CCCcccccccccceeecccC-cCChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCceEEeee
Q 026944 109 GNGITFWSHEWEKHGTCSES-VLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNV 187 (230)
Q Consensus 109 ~~~~~fw~hEW~KHGtC~~~-~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~l~C~~ 187 (230)
++..||+|||+|||||++. ..++.+||.+|++|++++|+..+|+++||+|+++.|++++|++||++++|..|.|+|.+
T Consensus 78 -~~~~fw~hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~~~~~~~~~i~~ai~~~~g~~~~l~C~~ 156 (195)
T cd01061 78 -NNQSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVPSTQTYTLSDIQNAIKAATGVTPVIKCSK 156 (195)
T ss_pred -CcchHHHHHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCCCCcEEcHHHHHHHHHHHHCCCcEEEeCc
Confidence 4678999999999999985 46999999999999999999999999999996588999999999999999999999987
Q ss_pred CCCCCceEEEEEEEEeCCCCceecCCCCCCCCCCC-CCeec
Q 026944 188 DESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCG-SQIEF 227 (230)
Q Consensus 188 ~~~~~~~L~Ev~iC~d~~~~~~i~Cp~~~~~~~C~-~~i~~ 227 (230)
+. ++.+|+||+||+|+++.++++||.....+ || +.|.|
T Consensus 157 ~~-~~~~L~Ev~iC~~k~~~~~~~C~~~~~~~-C~~~~i~f 195 (195)
T cd01061 157 DP-GKGELNEIWICFDKKGGEFIDCPRPPKST-CPDDGIKF 195 (195)
T ss_pred CC-CCcEEEEEEEEEECCCCeEeeCCCCCCCC-CCCCceEC
Confidence 54 45799999999999977899999876555 99 67765
No 3
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=100.00 E-value=7.3e-56 Score=367.45 Aligned_cols=193 Identities=45% Similarity=0.931 Sum_probs=169.1
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCCccCC
Q 026944 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLACPS 108 (230)
Q Consensus 29 fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~~~~~ 108 (230)
||||+||++|||+||...+.+|.. ..+..+||||||||++.++.+|++|+.+..++...+.++.++|+.+||++..+.
T Consensus 1 ~d~~~l~l~W~p~~C~~~~~~~~~--~~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~l~~~w~~~~~~~ 78 (195)
T cd00374 1 FDYYVLVLQWPPTFCATGPCKCCG--TPPPDSFTIHGLWPDNCDGTYPQFCDSSSFFDKSKDSDLLDELNKYWPDLMPGK 78 (195)
T ss_pred CCeEEEEEeCcCCcccCCCCCCCC--CCchHHeeEccccCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCcccCCCC
Confidence 799999999999999886544431 135689999999999988889999997667776777889999999999995322
Q ss_pred CCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHHHHHHHCCCCC-CCCcccHHHHHHHHHHHhCCCceEEeee
Q 026944 109 GNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNV 187 (230)
Q Consensus 109 ~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~ai~~~~g~~p~l~C~~ 187 (230)
+..||+|||+|||||+++.+++.+||++|++|++++|++++|+.+||+| +++.|++++|++||++++|.+|.|+|.+
T Consensus 79 --~~~fw~hEW~KHGTC~~~~~~~~~YF~~a~~l~~~~ni~~~L~~~~i~p~~~~~~~~~~i~~ai~~~~g~~~~l~C~~ 156 (195)
T cd00374 79 --DSSFWKHEWNKHGTCSGTLLDQDDYFRTALKLLDKLDLLSILAKAGIKPSDGSTYTLAFIQNAIKAATGATPSLKCTK 156 (195)
T ss_pred --CchHHHHHHhcCceecCCcCCHHHHHHHHHHHHHhCCHHHHHHHCCCcCCCCceecHHHHHHHHHHHHCCCcEEEecc
Confidence 5789999999999999877899999999999999999999999999999 5899999999999999999999999987
Q ss_pred CCCCCceEEEEEEEEeCCCCceecCCCCCCCCCCC-CCeec
Q 026944 188 DESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCG-SQIEF 227 (230)
Q Consensus 188 ~~~~~~~L~Ev~iC~d~~~~~~i~Cp~~~~~~~C~-~~i~~ 227 (230)
+. ++.+|+||+||+|+++.++++||.....+ || +.|.|
T Consensus 157 ~~-~~~~L~Ev~iC~~~~~~~~~~C~~~~~~~-C~~~~i~~ 195 (195)
T cd00374 157 DP-GKGLLTEIWICFDKDALKFIDCPTPGKST-CPADGIKF 195 (195)
T ss_pred CC-CCcEEEEEEEEEECCCCeEEeCCCCCCCC-CCCCcEEC
Confidence 65 56899999999999966899999865455 99 67765
No 4
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=100.00 E-value=6.8e-56 Score=366.45 Aligned_cols=181 Identities=46% Similarity=0.966 Sum_probs=157.2
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeecCCCCCCC-CCCCCCCCCCCCCchhh---hHHHHhhccCCCC
Q 026944 29 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGS-YPSNCDPNAPFDQSQIS---DLRSSMLKNWPTL 104 (230)
Q Consensus 29 fD~~~L~l~Wpp~~C~~~~~~C~~~~~~~~~~ftIHGLWP~~~~~~-~p~~C~~~~~~d~~~i~---~l~~~L~~~Wp~~ 104 (230)
||||+||++|||+||..+..+|.+ .+.++||||||||++.+++ +|++|+....||...++ +++++|+.+||++
T Consensus 1 fD~~~l~~~W~p~~C~~~~~~C~~---~~~~~ftIHGLWP~~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~~L~~~Wp~~ 77 (189)
T PF00445_consen 1 FDYYVLALQWPPSFCSTNSPQCKP---PPPNNFTIHGLWPSNCDGGTYPQNCNSSPNFDNSNLSNPPELKSELDKYWPDL 77 (189)
T ss_dssp -SEEEEEEEEHHHHTSSSSSCHSS---SSTSSEEEEEEEEETTTSSSCCCSSSTTTTTSGGGGGH-HGGHHHHHHHSTBS
T ss_pred CeEEEEEEEeCchhcCCCCCcCCC---CCCcceEEecccCCCCCCCCCcceecCccccccccchhhhHHhhhhhhhhhhh
Confidence 899999999999999876567863 4578999999999977666 99999876779988888 9999999999999
Q ss_pred ccCCCCCcccccccccceeecccCc-CChHHHHHHHHHHHhhcCHHHHHHHCCCCC-CCCcccHHHHHHHHHHHh-CCCc
Q 026944 105 ACPSGNGITFWSHEWEKHGTCSESV-LNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEAS-GFSP 181 (230)
Q Consensus 105 ~~~~~~~~~fw~hEW~KHGtC~~~~-~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~ai~~~~-g~~p 181 (230)
..+. ...||+|||.|||||++.. .++.+||++|++|++++|+.++|+++||+| .++.|++++|++||++++ |..|
T Consensus 78 ~~~~--~~~fw~hEW~KHGtC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~gI~p~~~~~~~~~~i~~al~~~~~~~~~ 155 (189)
T PF00445_consen 78 KNSN--SESFWKHEWEKHGTCSGMDFIDQYDYFSTALKLYKKLNLPKILANAGIVPSNGKTYSLSDIRDALKQAFNGVRP 155 (189)
T ss_dssp SSSH--HHHHHHHHHHHTGGGGTTTSSSHHHHHHHHHHHHHHCHHHHHHHHTTHCSCSSEEEEHHHHHHHHHHHHTSSGE
T ss_pred ccch--hhhhHHhcceeeeEEcCCchhhHHHHHHHHHHHHHhccchHHHhhcccCCCccccccHHHHHHHHHHHcCCCce
Confidence 4221 1589999999999999932 239999999999999999999999999999 677999999999999999 9999
Q ss_pred eEEeeeC-CCCCceEEEEEEEEeCCCCceecCCC
Q 026944 182 WIECNVD-ESGNSQLYQIYLCVDTSASNFINCPV 214 (230)
Q Consensus 182 ~l~C~~~-~~~~~~L~Ev~iC~d~~~~~~i~Cp~ 214 (230)
.|+|.++ .+++.+|.||+||+|+++.++||||.
T Consensus 156 ~l~C~~~~~~~~~~L~ei~iC~~~~~~~~idCp~ 189 (189)
T PF00445_consen 156 QLRCSRNQVNGEQYLTEIRICFDKDLFQFIDCPC 189 (189)
T ss_dssp EEEEECTETTSEEEEEEEEEEEETTSSSEE--S-
T ss_pred EEEEecCCCCCcEEEEEEEEEEeCCCCeEeCCcC
Confidence 9999987 67778999999999999878999983
No 5
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.
Probab=100.00 E-value=1.3e-48 Score=321.95 Aligned_cols=172 Identities=30% Similarity=0.618 Sum_probs=141.0
Q ss_pred ccEEEEEeecccccccCCCC--ccC-CCCCCCCCCceEeeecCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhccCCCCc
Q 026944 29 FDFFYFVLQWPGSYCDTAKS--CCY-PTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMLKNWPTLA 105 (230)
Q Consensus 29 fD~~~L~l~Wpp~~C~~~~~--~C~-~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~d~~~i~~l~~~L~~~Wp~~~ 105 (230)
||||+||++|||+||..... +|. ... .+..+||||||||++.++.+|++|+.+...+. ..+++++|..+||+
T Consensus 1 fd~~~lal~Wpps~C~~~~~~~~~~~~~~-~~~~~ftiHGLWP~~~~~~~p~~C~~~~~~~~--~~~~~~~l~~~~p~-- 75 (184)
T cd01062 1 FDYYVLALSWQPGFCATQGDRPECATCGT-LDAYGFTLHGLWPQKPKGGWPEYCGVTSEPPL--SEETRSRLLDVMPA-- 75 (184)
T ss_pred CceEEEEEeeCHHHhccCCcCCccccCCC-CCCCceEEecCCCCCCCCCCcCcCcCCcCCCC--CHHHHHHHHhhCCc--
Confidence 79999999999999977532 321 111 24589999999999988889999985420111 14667788999994
Q ss_pred cCCCCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCc----
Q 026944 106 CPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSP---- 181 (230)
Q Consensus 106 ~~~~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p---- 181 (230)
.+||+|||+|||||++ .++.+||++|++|++++|+.++|+..++.+ + |+.++|++||++++|..|
T Consensus 76 ------~~~w~hEW~KHGtC~~--~~~~~YF~~a~~l~~~~~~~~~l~~~~~~~-~--~~~~~i~~a~~~~~~~~~~~~~ 144 (184)
T cd01062 76 ------SGLIRHEWRKHGTCSG--LDPDAYFAKARNLREALKIPPELRLLAGNI-G--VTASEIRQAFIKANPGLPPDAV 144 (184)
T ss_pred ------hhHhHHHHhcCCcCCC--CCHHHHHHHHHHHHHHcCcchhhhhccccC-C--cCHHHHHHHHHHHCCCCCCceE
Confidence 4699999999999998 899999999999999999999999865432 3 999999999999998776
Q ss_pred eEEeeeCCCCCceEEEEEEEEeCCCCceecCCCCCCCCCCCC
Q 026944 182 WIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGS 223 (230)
Q Consensus 182 ~l~C~~~~~~~~~L~Ev~iC~d~~~~~~i~Cp~~~~~~~C~~ 223 (230)
.|+|.+ .+|+||+||+|+++ ++++||.....+ |++
T Consensus 145 ~~~C~~-----~~L~Ei~iC~~~~~-~~~~C~~~~~~~-C~~ 179 (184)
T cd01062 145 SVSCQG-----GLLTEVRICLDKDL-KFAACPTADRDN-CPA 179 (184)
T ss_pred EEEECC-----CeEEEEEEEeCccc-CcccCCccccCC-CCC
Confidence 899964 58999999999995 799999865455 984
No 6
>PRK10095 ribonuclease I; Provisional
Probab=100.00 E-value=5.5e-43 Score=301.19 Aligned_cols=188 Identities=21% Similarity=0.426 Sum_probs=138.3
Q ss_pred CCCccEEEEEeecccccccCC-------CCccCCCC--CCCCCCceEeeecCCCC---------CCC-CCCCCCCCC---
Q 026944 26 ARNFDFFYFVLQWPGSYCDTA-------KSCCYPTT--GKPAADFGIHGLWPNYN---------DGS-YPSNCDPNA--- 83 (230)
Q Consensus 26 ~~~fD~~~L~l~Wpp~~C~~~-------~~~C~~~~--~~~~~~ftIHGLWP~~~---------~~~-~p~~C~~~~--- 83 (230)
.+.||||+|||+|+|+||... +.+|.... .....+||||||||++. ++. ++.+|....
T Consensus 31 ~g~fd~YvLALSWqP~fC~~~~~~~~~~~~eC~~~~~~~~~~~~f~LHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~p~ 110 (268)
T PRK10095 31 YGDFDRYVLALSWQTGFCQSQHDRNRNEPDECRLQKETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIPN 110 (268)
T ss_pred CCCcceEEEEEeeCHHHHhhhccccCCCchhhhccccCCCCCCceEEecCCCCCcccccccCccccccccccccccCCCc
Confidence 479999999999999999642 24676321 12457799999999872 111 233343110
Q ss_pred ----------CCCCchh-hhHHHHhhccCCCCccCCCCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHH---
Q 026944 84 ----------PFDQSQI-SDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLL--- 149 (230)
Q Consensus 84 ----------~~d~~~i-~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~--- 149 (230)
..+...+ .++.+.|..++|+.. ....||+|||+|||||++ +++.+||.++++|++++|++
T Consensus 111 ~p~~~~~~~C~~~~~~l~~~~~~~l~~~mP~~~----~~s~l~~heW~KHGtC~~--~~~~~YF~~al~L~~kvn~s~~~ 184 (268)
T PRK10095 111 LPEARASRKCSAPETGLSLETAAKLSEVMPGAG----GRSCLERYEYAKHGACFG--FDPDAYFGTMVRLNQEIKESEAG 184 (268)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHhCCCCC----ccchhHHHHHHhCCeecC--CCHHHHHHHHHHHHHHhchhhhh
Confidence 0111223 467788999999872 234699999999999998 99999999999999999964
Q ss_pred HHHHHCCCCCCCCcccHHHHHHHHHHHhCCC----ceEEeeeCCCCCceEEEEEEEEeCC-------CCceecCCCCCCC
Q 026944 150 QALRTAGIVPDGSSYSLESIKDAIKEASGFS----PWIECNVDESGNSQLYQIYLCVDTS-------ASNFINCPVFPNG 218 (230)
Q Consensus 150 ~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~----p~l~C~~~~~~~~~L~Ev~iC~d~~-------~~~~i~Cp~~~~~ 218 (230)
.+|.++ .+++|++++|++||++++|.. |.|+|.++. .+|+||+||+|++ ...+++|+. .+
T Consensus 185 ~~L~~~----~Gk~~s~~~I~~Ai~~a~G~~~~~~~~L~C~~~~---~~L~EV~ICl~~~~~~~~l~~~~~~~~~~--~~ 255 (268)
T PRK10095 185 KFLADN----YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNP---AYLTEIQISLKADAINAPLSANSFLPQPH--PG 255 (268)
T ss_pred hhhhcC----CCcEEcHHHHHHHHHHHhCCCCCCcceEEeCCCC---cEEEEEEEEcccccccCCchhhhccCCCC--CC
Confidence 456654 588999999999999999854 489997532 5899999999887 223466664 24
Q ss_pred CCCCCCeecCC
Q 026944 219 KKCGSQIEFPP 229 (230)
Q Consensus 219 ~~C~~~i~~p~ 229 (230)
+ |+..|.+++
T Consensus 256 ~-C~~~~~i~~ 265 (268)
T PRK10095 256 N-CGKQFVIDK 265 (268)
T ss_pred C-CCCCeeeCC
Confidence 4 999988775
No 7
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-40 Score=274.44 Aligned_cols=179 Identities=30% Similarity=0.629 Sum_probs=141.2
Q ss_pred CccEEEEEeecccccccCCC--CccCCCCC-CCCCCceEeeecCCCCCC----CCCCCCCCCCCCCCchhh-hHHHHhhc
Q 026944 28 NFDFFYFVLQWPGSYCDTAK--SCCYPTTG-KPAADFGIHGLWPNYNDG----SYPSNCDPNAPFDQSQIS-DLRSSMLK 99 (230)
Q Consensus 28 ~fD~~~L~l~Wpp~~C~~~~--~~C~~~~~-~~~~~ftIHGLWP~~~~~----~~p~~C~~~~~~d~~~i~-~l~~~L~~ 99 (230)
.||+|+|+|+|+|+||+++. ..|.-+.+ ....+||+|||||++.++ .+|.+|..+ ++..+. .+.+.|..
T Consensus 52 g~d~YVLALSWsP~fC~sq~~~~e~~~Qc~~~~~~gftVHGLWPqn~~~~~~~~~pr~cr~~---~~~~lP~v~~~~l~~ 128 (249)
T COG3719 52 GFDFYVLALSWSPGFCESQHDPDECRLQCETNRAFGFTVHGLWPQNENGRAVRDYPRFCRGR---PWPRLPEVIASQLLD 128 (249)
T ss_pred CcceEEEEEecChHHhhcCCCcchhHHhcccccccceEEeccCCCCCCCcccccChhhhcCC---CcccCCHHHHHHHhh
Confidence 39999999999999998753 33332211 356899999999998876 589999752 233343 34567888
Q ss_pred cCCCCccCCCCCcccccccccceeecccCcCChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCC
Q 026944 100 NWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGF 179 (230)
Q Consensus 100 ~Wp~~~~~~~~~~~fw~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~ 179 (230)
.+|+. .|-+|||+|||||++ ++|.+||.++++|+++++++..+...- ++++++..+|+.||.+++|.
T Consensus 129 vmPg~--------~L~~heW~KHGtC~g--~s~~~YFa~~r~l~~~l~~p~~~~~~a---~~~~ls~~ei~~AF~~~n~~ 195 (249)
T COG3719 129 VMPGA--------GLERHEWRKHGTCSG--LSQEAYFATTRRLFEELKLPPVRKLLA---DGKTLSRDEIEQAFDKANGG 195 (249)
T ss_pred cCCch--------hhhhhhHHhcCccCC--CCHHHHHHHHHHHHHHhcCCccccccc---cccccCHHHHHHHHHHhCCC
Confidence 88985 399999999999999 999999999999999999987665432 47899999999999999963
Q ss_pred ----CceEEeeeCCCCCceEEEEEEEEeCCCCceecC----CCCCCCCCCCCC-eecCC
Q 026944 180 ----SPWIECNVDESGNSQLYQIYLCVDTSASNFINC----PVFPNGKKCGSQ-IEFPP 229 (230)
Q Consensus 180 ----~p~l~C~~~~~~~~~L~Ev~iC~d~~~~~~i~C----p~~~~~~~C~~~-i~~p~ 229 (230)
.+.+.|+. .+|+||+||+|++ .++.+| |....+. |+.+ |..|+
T Consensus 196 ~~~~~v~vsc~~-----~~LtEl~Icl~~~-~~~~ac~~~~~~~~~~~-C~~~~v~~~~ 247 (249)
T COG3719 196 LKGDAVRVSCQG-----NYLTELRICLDKD-LQNAACLADLPQPDPGN-CRKTFVIAPG 247 (249)
T ss_pred CCchheEEEeec-----cceeeEEEEEccc-cccchhhccCCCCCccc-ccccccccCC
Confidence 45799975 4999999999999 579999 7655556 9865 43343
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.52 E-value=1.5 Score=32.30 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=12.2
Q ss_pred CccchhhHHHHHHHHHHHHHHhhcc
Q 026944 1 MECKRQFSIILIKLFFIQYLSVLCA 25 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (230)
|+++.-+++.++|+.+|++++.+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 8844434434444445555554443
No 9
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=75.94 E-value=2.4 Score=37.96 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=27.4
Q ss_pred CHHHHHHHCCCCC-CCCcccHHHHHHHHHHHhCCCce
Q 026944 147 NLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPW 182 (230)
Q Consensus 147 ni~~~L~~~gI~P-~~~~~~~~~i~~ai~~~~g~~p~ 182 (230)
.-+++|+++|+.| +|+.++..+|..|+.+.++..+.
T Consensus 51 PgLNtLANHGyLPrnG~~It~~~l~~al~~~~n~~~~ 87 (317)
T PF01328_consen 51 PGLNTLANHGYLPRNGRNITVEQLINALQEGYNLSPD 87 (317)
T ss_dssp HHHHHHHHTTSS-TT-EEE-HHHHHHHHHHHH-B-HH
T ss_pred ccHHHHHhcCccCCCCccccHHHHHHHHHHHhCCChH
Confidence 4568999999999 99999999999999999887664
No 10
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=63.93 E-value=14 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.7
Q ss_pred CHHHHHHHCCCCCCCCcccHHHHHHHHHHH
Q 026944 147 NLLQALRTAGIVPDGSSYSLESIKDAIKEA 176 (230)
Q Consensus 147 ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~ 176 (230)
++.+.|.+.||.......+++++.+..++.
T Consensus 8 ~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 467899999998833235899999888754
No 11
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=60.42 E-value=4.6 Score=18.97 Aligned_cols=10 Identities=50% Similarity=1.258 Sum_probs=8.0
Q ss_pred CCceEeeecC
Q 026944 59 ADFGIHGLWP 68 (230)
Q Consensus 59 ~~ftIHGLWP 68 (230)
..|.+||.|-
T Consensus 3 a~~~L~~WWr 12 (14)
T PF08255_consen 3 ATFSLHGWWR 12 (14)
T ss_pred eEEEEeeEEE
Confidence 3689999994
No 12
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=50.65 E-value=14 Score=25.30 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCccc
Q 026944 131 NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYS 165 (230)
Q Consensus 131 ~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~ 165 (230)
+...||+..+ ++.++.+.|.++|+++ |-++.
T Consensus 31 e~~~~f~~~L---~~~Gv~~~L~~~G~~~-GD~V~ 61 (69)
T TIGR03595 31 ENLRRFARKL---KKLGVEDALRKAGAKD-GDTVR 61 (69)
T ss_pred HHHHHHHHHH---HHCCHHHHHHHcCCCC-CCEEE
Confidence 4556776555 6789999999999998 55543
No 13
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=48.40 E-value=6.3 Score=27.81 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=6.4
Q ss_pred CceEeeec
Q 026944 60 DFGIHGLW 67 (230)
Q Consensus 60 ~ftIHGLW 67 (230)
.=++||||
T Consensus 70 yCNlHGLW 77 (78)
T cd03171 70 YCNLHGLW 77 (78)
T ss_pred Eeccccee
Confidence 44789999
No 14
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=48.30 E-value=6.5 Score=27.99 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=6.4
Q ss_pred CceEeeec
Q 026944 60 DFGIHGLW 67 (230)
Q Consensus 60 ~ftIHGLW 67 (230)
.=++||||
T Consensus 78 yCN~HGlw 85 (86)
T cd00524 78 YCNLHGLW 85 (86)
T ss_pred Ecccceee
Confidence 44789999
No 15
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=46.49 E-value=8 Score=16.50 Aligned_cols=7 Identities=57% Similarity=1.754 Sum_probs=5.0
Q ss_pred ccccccc
Q 026944 114 FWSHEWE 120 (230)
Q Consensus 114 fw~hEW~ 120 (230)
-|+|+|.
T Consensus 2 HwS~~w~ 8 (10)
T PF00446_consen 2 HWSHGWK 8 (10)
T ss_pred ccccccC
Confidence 3788885
No 16
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=44.85 E-value=29 Score=23.70 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHhhcCHHHHHHHCCCCCCCCccc
Q 026944 131 NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYS 165 (230)
Q Consensus 131 ~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~ 165 (230)
....||+..+ ++.++.+.|.++|+++ |.++.
T Consensus 31 e~~~rf~~~L---~~~Gv~~~L~~~G~~~-GD~V~ 61 (69)
T PF09269_consen 31 ESLRRFQRKL---KKMGVEKALRKAGAKE-GDTVR 61 (69)
T ss_dssp GGHHHHHHHH---HHTTHHHHHHTTT--T-T-EEE
T ss_pred HHHHHHHHHH---HHCCHHHHHHHcCCCC-CCEEE
Confidence 4567887766 6789999999999997 55543
No 17
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=42.70 E-value=8.5 Score=28.59 Aligned_cols=9 Identities=56% Similarity=1.151 Sum_probs=7.0
Q ss_pred CceEeeecC
Q 026944 60 DFGIHGLWP 68 (230)
Q Consensus 60 ~ftIHGLWP 68 (230)
.=++||||=
T Consensus 93 yCNlHGLW~ 101 (104)
T cd03172 93 YCNIHGLWE 101 (104)
T ss_pred EcccceeEE
Confidence 456899994
No 18
>TIGR00332 neela_ferrous desulfoferrodoxin ferrous iron-binding domain. The N-terminal domain of desulfoferrodoxin is described in a separate model, dfx_rbo (TIGR00320).
Probab=42.67 E-value=8.3 Score=28.90 Aligned_cols=10 Identities=50% Similarity=0.989 Sum_probs=7.3
Q ss_pred CceEeeecCC
Q 026944 60 DFGIHGLWPN 69 (230)
Q Consensus 60 ~ftIHGLWP~ 69 (230)
.=++||||=+
T Consensus 91 YCNlHGLW~~ 100 (107)
T TIGR00332 91 YCNIHGLWEY 100 (107)
T ss_pred EecccccEEe
Confidence 3468999953
No 19
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=40.19 E-value=14 Score=32.73 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=23.4
Q ss_pred hhhhHHHHhhccCCCCccCCCCCcccccccccceee
Q 026944 89 QISDLRSSMLKNWPTLACPSGNGITFWSHEWEKHGT 124 (230)
Q Consensus 89 ~i~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGt 124 (230)
....|+++|...=-||. +..+| +.-|.||||
T Consensus 264 AF~KlL~rLAaEGydls----~PiDL-K~hWAKHGT 294 (301)
T PF06217_consen 264 AFKKLLERLAAEGYDLS----NPIDL-KDHWAKHGT 294 (301)
T ss_pred HHHHHHHHHHhcccccC----Cccch-HHHHHhcCC
Confidence 34678999988888873 34567 666999998
No 20
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=39.44 E-value=64 Score=22.75 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=27.2
Q ss_pred CHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCce-EEeee
Q 026944 147 NLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPW-IECNV 187 (230)
Q Consensus 147 ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~-l~C~~ 187 (230)
+++..+-+. +++|+.+.++.+|.+.||.... -.|..
T Consensus 6 eVL~mml~~-----~~~~t~~~L~~~i~~~FG~~arFhTCSa 42 (77)
T TIGR03853 6 EVLNLMLAS-----GEPYTRESLKAAIEQKFGEDARFHTCSA 42 (77)
T ss_pred HHHHHHHHc-----CCCcCHHHHHHHHHHHhCCCceEeeccc
Confidence 455655443 6789999999999999997665 45764
No 21
>PF01880 Desulfoferrodox: Desulfoferrodoxin; InterPro: IPR002742 Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulfoferrodoxin from Desulfovibrio gigas, and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin []. This domain comprises essentially the full length of neelaredoxin (O50258 from SWISSPROT, []), a monomeric, blue, non-haem iron protein of D. gigas said to bind two iron atoms per monomer with identical spectral properties. Neelaredoxin was shown recently to have significant superoxide dismutase activity []. This domain is also found (in a form in which the distance between the motifs H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the C-terminal domain of desulfoferrodoxin, which is said to bind a single ferrous iron atom. The N-terminal domain of desulfoferrodoxin is described by IPR004462 from INTERPRO.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1Y07_D 1DFX_A 3QZB_A 2AMU_A ....
Probab=37.01 E-value=8.6 Score=28.15 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.0
Q ss_pred ceEeeecC
Q 026944 61 FGIHGLWP 68 (230)
Q Consensus 61 ftIHGLWP 68 (230)
=.|||||=
T Consensus 87 CNlHGLW~ 94 (96)
T PF01880_consen 87 CNLHGLWE 94 (96)
T ss_dssp ETTTEEEE
T ss_pred ccccccEe
Confidence 35899993
No 22
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=35.17 E-value=49 Score=21.24 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=24.8
Q ss_pred HHHHHhhcCHHHHHHHCCCCCCCCcccHHHHHHHHH
Q 026944 139 ALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIK 174 (230)
Q Consensus 139 al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~ 174 (230)
+++-.-+++|.+++.++| ++..+.++|...+.
T Consensus 2 aLk~aveLgI~dii~~~g----~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 2 ALKCAVELGIPDIIHNAG----GGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTHHHHHHHHT----TS-BEHHHHHHTST
T ss_pred cHHHHHHcCcHHHHHHcC----CCCCCHHHHHHHcC
Confidence 455556779999999986 47889999988776
No 23
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=35.16 E-value=75 Score=22.47 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=26.9
Q ss_pred CHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCce-EEeee
Q 026944 147 NLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPW-IECNV 187 (230)
Q Consensus 147 ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~-l~C~~ 187 (230)
+++..+-+. +++|+.+++..||.+.||.... -.|..
T Consensus 8 eVL~mmi~~-----~~~~t~~~L~~ai~~~FG~~arFhTCSa 44 (78)
T PF10678_consen 8 EVLNMMIES-----GNPYTKEELKAAIIEKFGEDARFHTCSA 44 (78)
T ss_pred HHHHHHHHc-----CCCcCHHHHHHHHHHHhCCCceEEecCC
Confidence 455666443 6789999999999999997665 45754
No 24
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=34.76 E-value=15 Score=28.06 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=7.4
Q ss_pred CceEeeecCC
Q 026944 60 DFGIHGLWPN 69 (230)
Q Consensus 60 ~ftIHGLWP~ 69 (230)
.=.|||||-+
T Consensus 112 yCNiHGLWe~ 121 (126)
T COG2033 112 YCNIHGLWEG 121 (126)
T ss_pred ecceeeeeec
Confidence 4468999954
No 25
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=33.90 E-value=14 Score=28.46 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=6.8
Q ss_pred CceEeeecC
Q 026944 60 DFGIHGLWP 68 (230)
Q Consensus 60 ~ftIHGLWP 68 (230)
.=++||||=
T Consensus 115 yCNlHGLW~ 123 (125)
T TIGR00320 115 YCNIHGHWK 123 (125)
T ss_pred EccccceEE
Confidence 446899993
No 26
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=28.45 E-value=57 Score=24.00 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=10.0
Q ss_pred ccCCCccEEEEEeecc
Q 026944 24 CAARNFDFFYFVLQWP 39 (230)
Q Consensus 24 ~~~~~fD~~~L~l~Wp 39 (230)
..+.+++|+-=.-+||
T Consensus 45 t~~V~~~~lfg~~~~P 60 (98)
T COG5416 45 TDSVEFNYLFGQWELP 60 (98)
T ss_pred cCceEEEeecchhhhh
Confidence 3346788876555665
No 27
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=26.14 E-value=77 Score=20.26 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHCCCCCCCCcccHHHHHHHHHHHhCC
Q 026944 148 LLQALRTAGIVPDGSSYSLESIKDAIKEASGF 179 (230)
Q Consensus 148 i~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~ 179 (230)
+..+|++++ -.++|..+|+.++++.+|.
T Consensus 9 i~~iL~~~d----l~~vT~k~vr~~Le~~~~~ 36 (54)
T PF08766_consen 9 IREILREAD----LDTVTKKQVREQLEERFGV 36 (54)
T ss_dssp HHHHHTTS-----GGG--HHHHHHHHHHH-SS
T ss_pred HHHHHHhCC----HhHhhHHHHHHHHHHHHCC
Confidence 456777763 3578999999999999874
No 28
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=25.62 E-value=59 Score=22.22 Aligned_cols=17 Identities=0% Similarity=-0.097 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhccC
Q 026944 10 ILIKLFFIQYLSVLCAA 26 (230)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (230)
..+|.++|.-++++.+.
T Consensus 7 ~VLlaLvLIg~fAVqSd 23 (71)
T PF04202_consen 7 AVLLALVLIGSFAVQSD 23 (71)
T ss_pred HHHHHHHHHhhheeeec
Confidence 33334444444444333
No 29
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=25.22 E-value=61 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=11.9
Q ss_pred CCCCceEeeecCCCCC
Q 026944 57 PAADFGIHGLWPNYND 72 (230)
Q Consensus 57 ~~~~ftIHGLWP~~~~ 72 (230)
+.+-++--||||.-.+
T Consensus 175 NGDFLASSgLWPa~sd 190 (227)
T PF05399_consen 175 NGDFLASSGLWPAESD 190 (227)
T ss_pred ccceeeccccCccccc
Confidence 3466788999998554
No 30
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=22.74 E-value=40 Score=19.04 Aligned_cols=16 Identities=19% Similarity=0.462 Sum_probs=9.5
Q ss_pred cccccccccceeeccc
Q 026944 112 ITFWSHEWEKHGTCSE 127 (230)
Q Consensus 112 ~~fw~hEW~KHGtC~~ 127 (230)
..|+..+|+.|-+|..
T Consensus 8 ~~F~~~~y~~Ht~CIt 23 (28)
T PF08790_consen 8 KDFDGDSYKSHTSCIT 23 (28)
T ss_dssp EEEEGGGTTT-----S
T ss_pred CCcCcCCcCCCCcccC
Confidence 5699999999999965
No 31
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=22.27 E-value=3e+02 Score=19.57 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhCCCceEEeeeCCCCCceEEEEEEEEeCCC
Q 026944 165 SLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSA 206 (230)
Q Consensus 165 ~~~~i~~ai~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~d~~~ 206 (230)
-...|++++++..|..-.+++.-. ..-.+...+.+++|+++
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~-tp~gy~iD~E~~lD~~~ 89 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVI-TPYGYTIDFEIVLDKNG 89 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccc-cCCCceEEEEEEECCCC
Confidence 578899999999987766776432 33367889999999985
No 32
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=21.58 E-value=45 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=25.8
Q ss_pred HHHHCCCCCCCCcccHHHHHHHHHHHhCCCceEEeeeCCCCCceEEEEEEEEeC
Q 026944 151 ALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDT 204 (230)
Q Consensus 151 ~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~d~ 204 (230)
.+.+-|| +-++.++|.++|.+. ...-|.+||+||..
T Consensus 99 ~F~nLGI----qcv~Kk~v~~~L~~r--------------~~idLn~VRLcFqa 134 (159)
T cd07884 99 MFQNMGI----IHTAKKNIPEELYKK--------------KNMNLNQVVLRFQA 134 (159)
T ss_pred EeCCcce----EEEEecchHHHHhhh--------------cccCcccEEEEEEE
Confidence 3555665 357888999998764 22569999999953
No 33
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.34 E-value=99 Score=20.75 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=8.3
Q ss_pred CccchhhHHHHHHHH
Q 026944 1 MECKRQFSIILIKLF 15 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (230)
|+-.+++.+++++++
T Consensus 1 Mkk~ksifL~l~~~L 15 (61)
T PF15284_consen 1 MKKFKSIFLALVFIL 15 (61)
T ss_pred ChHHHHHHHHHHHHH
Confidence 777888433333333
No 34
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=21.33 E-value=1.1e+02 Score=18.03 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred hhcCHHHHHHHCCCCCCCCcccHHHHHHHHHHHhCCCc
Q 026944 144 NQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSP 181 (230)
Q Consensus 144 ~~~ni~~~L~~~gI~P~~~~~~~~~i~~ai~~~~g~~p 181 (230)
++..+.++-...| ++.+.+..+|++.+|.+|
T Consensus 7 ~~~~l~~iA~~~g-------~S~~~f~r~Fk~~~g~tp 37 (42)
T PF00165_consen 7 QKLTLEDIAEQAG-------FSPSYFSRLFKKETGMTP 37 (42)
T ss_dssp SS--HHHHHHHHT-------S-HHHHHHHHHHHTSS-H
T ss_pred CCCCHHHHHHHHC-------CCHHHHHHHHHHHHCcCH
Confidence 4455666655554 378889999999999776
Done!