Your job contains 1 sequence.
>026945
MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK
DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF
AGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP
GVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEILADDLAS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026945
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 941 1.4e-94 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 394 1.3e-36 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 372 2.8e-34 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 371 3.6e-34 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 371 3.6e-34 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 370 4.6e-34 1
UNIPROTKB|H0YGW8 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 369 5.8e-34 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 368 7.4e-34 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 370 1.1e-33 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 363 2.5e-33 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 362 3.2e-33 1
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 362 3.2e-33 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 358 8.5e-33 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 353 2.9e-32 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 343 3.3e-31 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 281 5.8e-27 2
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 295 4.0e-26 1
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 291 1.1e-25 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 294 2.0e-25 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 272 1.8e-23 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 269 7.0e-23 1
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 246 4.3e-20 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 232 1.9e-19 1
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 237 5.0e-19 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 223 2.1e-18 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 206 1.1e-16 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 206 1.1e-16 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 204 2.1e-16 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 202 3.7e-16 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 201 5.4e-16 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 201 5.4e-16 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 201 5.9e-16 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 200 6.9e-16 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 200 6.9e-16 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 200 6.9e-16 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 200 7.4e-16 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 200 7.4e-16 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 199 1.2e-15 1
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 203 1.6e-15 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 198 1.6e-15 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 198 1.6e-15 1
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 193 5.2e-15 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 196 8.5e-15 1
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 196 8.5e-15 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 192 1.1e-14 1
UNIPROTKB|E7EUN9 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 193 1.5e-14 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 191 1.7e-14 1
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 193 1.8e-14 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 188 2.0e-14 1
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 189 4.9e-14 1
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 189 4.9e-14 1
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 188 6.3e-14 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 181 1.0e-13 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 185 1.3e-13 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 177 3.8e-13 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 177 3.8e-13 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 179 5.5e-13 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 173 1.0e-12 1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 171 1.4e-12 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 170 2.0e-12 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 170 2.1e-12 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 168 2.8e-12 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 166 4.8e-12 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 166 4.8e-12 1
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 166 1.0e-11 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 163 1.1e-11 1
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 164 2.0e-11 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 158 8.2e-11 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 156 3.6e-10 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 156 3.6e-10 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 155 5.5e-10 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 151 8.7e-10 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 153 1.3e-09 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 153 1.3e-09 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 149 1.9e-09 1
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 153 5.4e-09 1
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 147 4.6e-08 1
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 146 6.4e-08 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 142 9.3e-08 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 140 1.2e-07 1
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 143 1.6e-07 1
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 141 2.9e-07 1
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 139 5.1e-07 1
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 139 5.2e-07 1
UNIPROTKB|J3QLD5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 128 8.8e-07 1
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 135 1.7e-06 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 126 6.9e-06 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 126 6.9e-06 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 128 7.9e-06 1
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 125 3.0e-05 1
SGD|S000005298 - symbol:SMM1 "Dihydrouridine synthase" sp... 111 0.00059 1
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 180/217 (82%), Positives = 195/217 (89%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
MDNLPLVKSLVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDAGCSLLAVHGRTRDEK
Sbjct: 192 MDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEK 251
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
DGKKFRADW+AIK VKNA+RIPVLANGNVR +EDV C++ETG EGVLSAE+LLENPA F
Sbjct: 252 DGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAF 311
Query: 121 AGFRTAEWIVGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQ 179
AGFRTAEW +EE DG LDQ DL+VEYLKLCEK+PVPWRMIRSHVHK+LGEWFRI
Sbjct: 312 AGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIH 371
Query: 180 PGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKK 216
P VRE LNAQN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 372 PQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 84/191 (43%), Positives = 115/191 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ +++ L+VP++CKIRVFP ++ T+KYAKMLE AGC LL VHGRT+D+K
Sbjct: 156 DEWDLLEKMIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKG 215
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++H+ DV C+EETG +GV+SAE L NPALF
Sbjct: 216 ALTGIASWKHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFE 275
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIRSHVHKLLGEWFRIQP 180
G W ++ EYL + EK+ P +R+H+ KL +I
Sbjct: 276 GRSPPVW----------------EMAEEYLDIVEKHSPCSLSFVRAHIFKLWHHTLQIHQ 319
Query: 181 GVREDL-NAQN 190
+REDL A+N
Sbjct: 320 DLREDLAKAKN 330
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 76/169 (44%), Positives = 108/169 (63%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+ AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/185 (41%), Positives = 112/185 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G A W +L EYL + ++P P +R+H+ KL ++
Sbjct: 244 GRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQE 287
Query: 182 VREDL 186
+RE+L
Sbjct: 288 LREEL 292
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/185 (41%), Positives = 112/185 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G A W +L EYL + ++P P +R+H+ KL ++
Sbjct: 244 GRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQE 287
Query: 182 VREDL 186
+RE+L
Sbjct: 288 LREEL 292
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|H0YGW8 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000538833 Uniprot:H0YGW8
Length = 298
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 8 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 67
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 68 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 118
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 119 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 160
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 74/169 (43%), Positives = 107/169 (63%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 370 (135.3 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 82/193 (42%), Positives = 112/193 (58%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L+ +V L L VPV+CKIR+F +L+ TI+YAKMLE AGC LL VHGRTR++K
Sbjct: 133 DEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKG 192
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A+WN IK V+ ++IP+LANGN+ ++DV +CL ETG +GV+SAE L NPA+F
Sbjct: 193 PLTGVANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFK 252
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G W + EYL+L + +P P IR H+ KL I+
Sbjct: 253 GVSPPVW----------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQN 296
Query: 182 --VREDLNAQNRL 192
+R+ L N+L
Sbjct: 297 SELRQYLATANQL 309
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 73/169 (43%), Positives = 105/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W I+AV+
Sbjct: 140 LSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEHIQAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 200 AVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 -------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 73/169 (43%), Positives = 105/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W I+AV+
Sbjct: 140 LSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEHIQAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 200 AVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 -------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 72/166 (43%), Positives = 103/166 (62%)
Query: 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80
PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+ A+
Sbjct: 143 PVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRKAVT 202
Query: 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGN 140
IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 203 IPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW------------ 250
Query: 141 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 71/188 (37%), Positives = 113/188 (60%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+D ++ +V++L ++ VP+ CKIR+ PNL DTIK A L++AGC LL +HGRT+++K
Sbjct: 156 LDKPHIILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQK 215
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
A+W AI+ ++ L IPV+ANG+V ED+ +CLEETG +GV+SAE +L NP+ F
Sbjct: 216 GHNSGIANWKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFF 275
Query: 121 AGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP 180
+G + + ++++ EY+ E Y + RSH+ K+L E +
Sbjct: 276 SGLKVPIY-----QVAR-----------EYIDFTEIYKTSIHVTRSHIFKMLKEKLDVYS 319
Query: 181 GVREDLNA 188
+RE + A
Sbjct: 320 DLRETMGA 327
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 66/134 (49%), Positives = 92/134 (68%)
Query: 3 NLPLVKSLVEKLAL---NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 59
NL + + +++ L L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++
Sbjct: 105 NLGCPQMIAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQ 164
Query: 60 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPAL
Sbjct: 165 KGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPAL 224
Query: 120 FAGFRTAEWIVGSE 133
F G A W + E
Sbjct: 225 FEGRSPAVWELAEE 238
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 281 (104.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 70/192 (36%), Positives = 107/192 (55%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
+N L++S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKG 184
Query: 62 GKKFRADWNAIKAV-KNALRIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
ADW I+ + KN VL ANGN+ H +D+ +C++ TG +GVLSAE L NP +
Sbjct: 185 HFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRI 244
Query: 120 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP-----WRMIRSHVHKLLGE 174
F S ++ +D D+ EYL + ++ + I+ H+ KL+
Sbjct: 245 FLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRP 295
Query: 175 WFRIQPGVREDL 186
I +R L
Sbjct: 296 LLSIHTDIRSKL 307
Score = 37 (18.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 175 WFRIQPGVR 183
W+R+QP +R
Sbjct: 360 WWRVQPYIR 368
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 54/109 (49%), Positives = 78/109 (71%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SA
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSA 232
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 51/98 (52%), Positives = 73/98 (74%)
Query: 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80
PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+ A+
Sbjct: 143 PVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRKAVT 202
Query: 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
IPV ANGN++ + DV++C+++TG +GV+SA + +PA
Sbjct: 203 IPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSPA 240
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 294 (108.6 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 63/173 (36%), Positives = 99/173 (57%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D + L+ +V + +P+SCKIRV + Q T++YAK L DAG ++L VHGRTRD K
Sbjct: 178 DEVDLICEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKG 237
Query: 62 GKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ ADW+ I+ V A+ R+PV+ANGN++ DV++C++ TG ++SAE LL NP +
Sbjct: 238 AETGLADWSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLI 297
Query: 120 F--AGFRTAEWIVGSE--EISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHV 168
F A W + +E E +K N + + ++C + + +R V
Sbjct: 298 FDDANAHVDTWKIAAEYLEYAKKFNAGTSAIRAHVFRICHHSLLEYEDLRMRV 350
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 272 (100.8 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 66/202 (32%), Positives = 108/202 (53%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
M+ L+ +L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K
Sbjct: 136 MEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195
Query: 61 DGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
K A+W IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP
Sbjct: 196 GQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPG 255
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGE 174
+F VG + +K+ + D ++ EY ++ C++ ++SH K+L
Sbjct: 256 VFN--------VGQTK-NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRP 306
Query: 175 WFRIQPGVREDLNAQN-RLTFE 195
+ +R L N + T+E
Sbjct: 307 FLPHHTDIRSTLATMNAKATWE 328
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 269 (99.8 bits), Expect = 7.0e-23, P = 7.0e-23
Identities = 66/196 (33%), Positives = 107/196 (54%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
MD+ LV L++ L NL++PV+ KIR++ + + ++KYAKM+ DAG + VHGRTR+ K
Sbjct: 167 MDDWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTREMK 226
Query: 61 DGKKFRADWNAIKAVKNAL-RIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
A+W +K +++ L + V +NGN+ + D+Q+C ET C+ V+SAE L NP
Sbjct: 227 GQATGLANWKILKYLRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPG 286
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQAD-LLVEYLKLC-EKYP--VPWRMIRSHVHKLLGE 174
+F W + +KD + D +L EY ++ E Y ++SH KLL
Sbjct: 287 VF-------WTLDD---NKDKQFPRVDKILREYFEIVKENYDSLASRHAMKSHFFKLLHA 336
Query: 175 WFRIQPGVREDLNAQN 190
+ + +R + N
Sbjct: 337 FLEVHKELRPIIGKAN 352
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 246 (91.7 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 48/118 (40%), Positives = 78/118 (66%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
L+ L+ KL + L VPV+ K R+ + + T++YAKM+ AG S++ +HGRTR++K
Sbjct: 177 LIYKLINKLHMELEVPVTAKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTG 236
Query: 66 RADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
ADW+ I+ +++ L + ANGN + +D+ +CLE TG +GV+SAE L +P++FA
Sbjct: 237 LADWSYIRYLRDNLPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFA 294
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 51/125 (40%), Positives = 79/125 (63%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LVK +V + ++ P VS KIR+ +++ T+ + +E AG S + VHGRT
Sbjct: 121 NKPELVKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAI 180
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ ++ IK +K++L IPV+ANG+++ M+DV+ E TG +GV+SA LL NPA
Sbjct: 181 ERHQP---VHYDTIKTIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPA 237
Query: 119 LFAGF 123
+F+GF
Sbjct: 238 MFSGF 242
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 237 (88.5 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
L+ L+ +L L++PV+ KIR+ + T+ YA+ + DAG S+L VHGR R++K
Sbjct: 172 LIHKLIRQLHDGLSIPVTAKIRILDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTG 231
Query: 66 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
ADW+AI+ ++ L + ANGN+ D+++CLE TG + V+SAE L +P LFA
Sbjct: 232 VADWSAIRHLRENLPPETVIFANGNILQRGDLERCLEATGADAVMSAEGNLSDPTLFA 289
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 223 (83.6 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 49/117 (41%), Positives = 72/117 (61%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
+ +V+++ + +P+S KIRV +L+DTI+ AK E G S + VHGRT K
Sbjct: 165 IYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHP-- 222
Query: 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
D++AIK VK+ + +PV ANG+V + + E+TG GV+SA LL NPALF G+
Sbjct: 223 VDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGY 279
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 46/125 (36%), Positives = 74/125 (59%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV+ +V + ++ P VS KIR+ +L+ T+ K E G S + VHGR +
Sbjct: 120 NKPELVRDMVRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIE 179
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ ++AIK +K ++ IPV+ANG+++ ++D + TG +GV+ A LL NPA
Sbjct: 180 ERHQP---VHYDAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPA 236
Query: 119 LFAGF 123
+FAG+
Sbjct: 237 MFAGY 241
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 54/182 (29%), Positives = 93/182 (51%)
Query: 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++ +
Sbjct: 122 VSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVSV 178
Query: 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNL 141
P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 179 PIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP-------------- 224
Query: 142 DQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG-VREDLNAQNRLTFEFLYNL 200
+D + +++L +Y + W + H+ +L F Q V +LN + + FL NL
Sbjct: 225 --SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNELNGRLAID-HFLNNL 281
Query: 201 VD 202
+D
Sbjct: 282 LD 283
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 204 (76.9 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV+ +V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +
Sbjct: 132 NKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ +++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA
Sbjct: 192 ERHQP---VHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPA 248
Query: 119 LFAGF 123
+FAG+
Sbjct: 249 MFAGY 253
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 202 (76.2 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 47/125 (37%), Positives = 73/125 (58%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV+ +V+++ + P VS KIR+ +L TI + E G S + VHGRT +
Sbjct: 132 NKPELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ + AIK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA
Sbjct: 192 ERHQP---VHYEAIKIIKENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPA 248
Query: 119 LFAGF 123
+FAG+
Sbjct: 249 MFAGY 253
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 201 (75.8 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 62/206 (30%), Positives = 110/206 (53%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M N PLVK +++ + ++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR
Sbjct: 115 MQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQ 174
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
K A+++ IKA+K + IPV+ANG++ E + L+ TG + ++ P
Sbjct: 175 CM--YKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPW 232
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFR 177
+F + ++ +++ +Q +++E+L KL + Y ++ IR K +G W+
Sbjct: 233 IFREIQ--HYLETGNKLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYL 287
Query: 178 IQPGVREDLNAQNRL-TFEFLYNLVD 202
Q R+ N+L T Y+LV+
Sbjct: 288 DQEDQRQFRADFNQLETAAEQYSLVE 313
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 201 (75.8 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 62/206 (30%), Positives = 110/206 (53%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M N PLVK +++ + ++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR
Sbjct: 115 MQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQ 174
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
K A+++ IKA+K + IPV+ANG++ E + L+ TG + ++ P
Sbjct: 175 CM--YKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPW 232
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFR 177
+F + ++ +++ +Q +++E+L KL + Y ++ IR K +G W+
Sbjct: 233 IFREIQ--HYLETGNKLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYL 287
Query: 178 IQPGVREDLNAQNRL-TFEFLYNLVD 202
Q R+ N+L T Y+LV+
Sbjct: 288 DQEDQRQFRADFNQLETAAEQYSLVE 313
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 201 (75.8 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 46/130 (35%), Positives = 73/130 (56%)
Query: 1 MDNLPLVKSLVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
+D V LV K L + KIR+ +L T +++E +G ++ VHGRTR
Sbjct: 123 LDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR- 181
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
+D F + +AI+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPA
Sbjct: 182 -QDRSSFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPA 240
Query: 119 LFAGFRTAEW 128
LFAG+ W
Sbjct: 241 LFAGYEETPW 250
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 200 (75.5 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 62/194 (31%), Positives = 105/194 (54%)
Query: 4 LPLVKSLVEKLAL---N-LNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTR 57
L L L EK+ + N ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR
Sbjct: 116 LMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTR 175
Query: 58 DE-KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
++ GK ADW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ N
Sbjct: 176 EQFYSGK---ADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGN 232
Query: 117 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 176
P L + ++ E + K ++A++ + + + K+ + +R + K G +F
Sbjct: 233 PWLIQ--QIVFYLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYF 289
Query: 177 RIQPG---VREDLN 187
+ PG +RE LN
Sbjct: 290 KGLPGASRLREILN 303
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 200 (75.5 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 62/194 (31%), Positives = 105/194 (54%)
Query: 4 LPLVKSLVEKLAL---N-LNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTR 57
L L L EK+ + N ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR
Sbjct: 116 LMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTR 175
Query: 58 DE-KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
++ GK ADW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ N
Sbjct: 176 EQFYSGK---ADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGN 232
Query: 117 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 176
P L + ++ E + K ++A++ + + + K+ + +R + K G +F
Sbjct: 233 PWLIQ--QIVFYLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYF 289
Query: 177 RIQPG---VREDLN 187
+ PG +RE LN
Sbjct: 290 KGLPGASRLREILN 303
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 200 (75.5 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 46/125 (36%), Positives = 74/125 (59%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV +V ++ + P VS KIR+ +L TI + +E G S + VHGRT +
Sbjct: 132 NKPELVLDMVRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ ++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA
Sbjct: 192 ERHQP---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPA 248
Query: 119 LFAGF 123
+FAG+
Sbjct: 249 MFAGY 253
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 200 (75.5 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 46/125 (36%), Positives = 73/125 (58%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV +V ++ + P VS KIR+ +L TI + E G S + VHGRT +
Sbjct: 132 NKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ ++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA
Sbjct: 192 ERHQP---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPA 248
Query: 119 LFAGF 123
+FAG+
Sbjct: 249 MFAGY 253
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 200 (75.5 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 46/125 (36%), Positives = 74/125 (59%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV +V ++ + P VS KIR+ +L TI + +E G S + VHGRT +
Sbjct: 132 NKPELVLDMVRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
E+ ++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA
Sbjct: 192 ERHQP---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPA 248
Query: 119 LFAGF 123
+FAG+
Sbjct: 249 MFAGY 253
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 199 (75.1 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 52/168 (30%), Positives = 87/168 (51%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
L+K+ +K + + + KIR+ ++ TI + + +AG L VHGRT++ +
Sbjct: 139 LIKTAKDKYGDS--ICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPV 196
Query: 66 RADWNAIKAVK-NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124
D AIK ++ N IPV+ANG+ + D QK ++ TG +GV+SA +L NPALF G
Sbjct: 197 NLD--AIKIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLD 254
Query: 125 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 172
W + E+ +L L Y +P+++ + H+ KL+
Sbjct: 255 KTPW--SAVEM--------------FLHLVTAYGLPYKLAQYHLAKLM 286
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 203 (76.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 39/118 (33%), Positives = 70/118 (59%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
+++++ L ++ PV+CKIR+ ++DT+ K +E G + +AVHGR +DE+
Sbjct: 142 IEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKDERPRHPVH 201
Query: 67 ADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
D+ I+AV ++ +PV+ANG V+ ED++ E TG V+ A + + NP++F
Sbjct: 202 CDY--IQAVAQSVSVPVIANGGSSDIVKEFEDIETFRESTGASSVMLARAAMWNPSVF 257
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 198 (74.8 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 63/188 (33%), Positives = 105/188 (55%)
Query: 21 PVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVK 76
PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR + +GK ADW+ IK VK
Sbjct: 144 PVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGK---ADWDIIKQVK 199
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEIS 136
A+ IPV+ NG+V +D ++ L+E G +GV+ + L +P + +RT +++ E +
Sbjct: 200 QAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMI--YRTVKYLETGELMP 257
Query: 137 KDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT 193
+ ++ D+ + +L +L + V R +R H L + R VR +NA N T
Sbjct: 258 EPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL-KGIRGNANVRNGINACN--T 314
Query: 194 FEFLYNLV 201
E L N++
Sbjct: 315 REDLANVL 322
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 198 (74.8 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 63/188 (33%), Positives = 105/188 (55%)
Query: 21 PVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVK 76
PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR + +GK ADW+ IK VK
Sbjct: 144 PVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGK---ADWDIIKQVK 199
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEIS 136
A+ IPV+ NG+V +D ++ L+E G +GV+ + L +P + +RT +++ E +
Sbjct: 200 QAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMI--YRTVKYLETGELMP 257
Query: 137 KDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT 193
+ ++ D+ + +L +L + V R +R H L + R VR +NA N T
Sbjct: 258 EPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL-KGIRGNANVRNGINACN--T 314
Query: 194 FEFLYNLV 201
E L N++
Sbjct: 315 REDLANVL 322
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 193 (73.0 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 44/123 (35%), Positives = 67/123 (54%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
L+ ++ L NL+VPV+CKIR+ + DT++ A+ +E G LAVHGR D +
Sbjct: 130 LIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRKI--ADRPRD 187
Query: 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125
A W+ I V AL IPV+ANG+V +D + TG V+ A + N ++F+
Sbjct: 188 PAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFSPKGK 247
Query: 126 AEW 128
+ W
Sbjct: 248 SHW 250
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 196 (74.1 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 43/130 (33%), Positives = 72/130 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+
Sbjct: 137 IEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA- 121
+ I+A+ L IPV+ANG H++ D++ + T V+ A + + NP++F
Sbjct: 197 CE--VIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 255 DGLRPLEEVM 264
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 196 (74.1 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 43/130 (33%), Positives = 72/130 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+
Sbjct: 137 IEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA- 121
+ I+A+ L IPV+ANG H++ D++ + T V+ A + + NP++F
Sbjct: 197 CE--VIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 255 DGLRPLEEVM 264
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 40/110 (36%), Positives = 65/110 (59%)
Query: 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK-AVKNAL- 79
+ KIR+ L +T++ + L DAG + +HGRTR + + A+ +AIK ++N
Sbjct: 166 IETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAIKYIIENISD 223
Query: 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 128
+PV+ANG+ + D+++ + TG GV++ LL NPALFAG+ T W
Sbjct: 224 KNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 41/130 (31%), Positives = 72/130 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 102 IEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVS 161
Query: 67 ADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPALFA- 121
+ IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP++F
Sbjct: 162 CE--VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK 219
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 220 EGLRPLEEVM 229
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 191 (72.3 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 48/120 (40%), Positives = 69/120 (57%)
Query: 6 LVKSLVEKLALNL--NVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
LV +V+++ L + VS K+R+ +LQ TI A+ LE AG + L +HGRT +K
Sbjct: 132 LVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQK 191
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
K D A+ V+ +L+IP++ NGNV D E+TG GV++A LL NPALF
Sbjct: 192 HSKD-TLDIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF 250
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 193 (73.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 41/130 (31%), Positives = 72/130 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 137 IEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPALFA- 121
+ IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP++F
Sbjct: 197 CE--VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 255 EGLRPLEEVM 264
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 188 (71.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 37/110 (33%), Positives = 65/110 (59%)
Query: 10 LVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67
++E + +PV+ K+R N ++ K AK+ ED G ++ +HGRTR + K ++
Sbjct: 126 ILEATVKAVKIPVTLKMRTGWDENHRNAPKLAKIAEDLGIKMITIHGRTRAQM--YKGKS 183
Query: 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117
DW I+ VKN ++IPV+ANG+++ ED ++ L E+G +G++ P
Sbjct: 184 DWQFIRTVKNTVKIPVIANGDIKTYEDAERALVESGADGIMIGRGAYGKP 233
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 189 (71.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 40/118 (33%), Positives = 66/118 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 137 IEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALF 120
+ AIKA+ L IPV+ANG H++ D++ T V+ A + + NP++F
Sbjct: 197 CE--AIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPSIF 252
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 189 (71.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 41/130 (31%), Positives = 72/130 (55%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L + PV+CKIR+ P+L+DT+ K +E G + + VHGR R+E+
Sbjct: 137 IEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKREERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA- 121
+ AIKA+ + IPV+ANG H++ D++ + T V+ A + + NP++F
Sbjct: 197 CE--AIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 255 EGLRPLEEVM 264
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 188 (71.2 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 40/118 (33%), Positives = 67/118 (56%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 137 IEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVS 196
Query: 67 ADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALF 120
+ AIKA+ L IPV+ANG H++ D++ + T V+ A + + NP++F
Sbjct: 197 CE--AIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSVF 252
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 181 (68.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/203 (25%), Positives = 99/203 (48%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
+ ++E + + VPV+ K+R+ NL + AK+ ED G ++ +HGRTR +
Sbjct: 115 IATKIMESVVKAVKVPVTVKMRMGWDTTNL-NAPTLAKVAEDVGIQMITIHGRTRSQMFS 173
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
ADW +K VK ++IPV+ NG++R ++D+ L E+G +GV+ P L
Sbjct: 174 GS--ADWKFVKRVKECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIK- 230
Query: 123 FRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVH----KLLG-E 174
+ ++ SE + + ++ +++++ Y + +++R H+ G
Sbjct: 231 -QALSFMKNSEILPEPTKSEKLAIILDHYDYALDYYGKDLGVKILRKHLSWYSSSYSGAS 289
Query: 175 WFRIQPGVRED-LNAQNRLTFEF 196
+FR Q D + + +LT EF
Sbjct: 290 YFRAQVNTMSDPVEVREKLT-EF 311
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 37/119 (31%), Positives = 69/119 (57%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KF 65
++S++ L + PV+CKIR+ P+++DT+ K +E G + +AVHGR +K+ + +
Sbjct: 136 IESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLERKKEERPQH 195
Query: 66 RADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ IKA+ A+ IPV+ANG ++ D++ + T V+ A + + NP++F
Sbjct: 196 PVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAAMWNPSIF 254
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 177 (67.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 40/116 (34%), Positives = 71/116 (61%)
Query: 7 VKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 64
V+ +V+ + +++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K
Sbjct: 121 VERIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYK 178
Query: 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
A+++ IKA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 179 GNAEYDTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 177 (67.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 40/116 (34%), Positives = 71/116 (61%)
Query: 7 VKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 64
V+ +V+ + +++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K
Sbjct: 121 VERIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYK 178
Query: 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
A+++ IKA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 179 GNAEYDTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 179 (68.1 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 45/151 (29%), Positives = 80/151 (52%)
Query: 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69
++ L L++PV+CKIR+ P+++ TI + L G + + +H RTRDE+ + A
Sbjct: 153 ILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDERP--QHPAHP 210
Query: 70 NAIKAVKNALRIPVLANGNVRHM---EDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
++AV A+ IP++ANG ++M +D++K E G + V+ A + N ++F
Sbjct: 211 EVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECGADSVMVARAAQINVSIFR----- 265
Query: 127 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY 157
+G L +L+ +YL+LC Y
Sbjct: 266 ----------PEGLLPMDELIEKYLRLCVDY 286
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 173 (66.0 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTR-DEKDG 62
LV +++ + ++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D G
Sbjct: 123 LVNDILQAVVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTRADLYTG 182
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+ A+++ I +K A+ IPV ANG++ E + L+ TG +G+L + P +F
Sbjct: 183 E---AEYDTIAMIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFRE 239
Query: 123 FRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQ 179
+++ + + + + +L+E+L + + R+ R HV G +
Sbjct: 240 IE--HYLLTGKTLPALQSSEVERILLEHLAALHVFYGDVMGVRIARKHV----GWYLATL 293
Query: 180 PGVREDLNAQNRL 192
PG RE NRL
Sbjct: 294 PGAREFRALFNRL 306
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 171 (65.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 34/111 (30%), Positives = 65/111 (58%)
Query: 10 LVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFR 66
++E + + +PV+ K+R N ++ K AK+ E+ G ++ +HGRTR + GK
Sbjct: 121 ILESVVKAVKIPVTLKMRTGWDNNNLNSPKLAKIAEETGIKMITIHGRTRTQMFTGK--- 177
Query: 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117
ADW I+ +K ++IPV+ NG+++++ D++ LEE+ +G++ P
Sbjct: 178 ADWKFIRNIKKCVKIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGAYGKP 228
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/117 (32%), Positives = 68/117 (58%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDT--IKYAKMLEDAGCSLLAVHGRTRDEK-DGK 63
V+++V + +P++ KIR + +D I+ A++ E+ GC+ + +H R+R + +G
Sbjct: 124 VRAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSRAQMFEGT 183
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
ADW + +K A+ IPV+ +G++ DV L+ TGC+GV+ A L NP +F
Sbjct: 184 ---ADWTKLAELKQAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIF 237
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 170 (64.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 47/164 (28%), Positives = 84/164 (51%)
Query: 10 LVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67
L+E + ++VPV+ K R+ L + A+ +AG ++ +HGRTR + K RA
Sbjct: 126 LIEAVVAAVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQF--YKGRA 183
Query: 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 127
DW AI AV+ A+ +P++ANG++ ++ L+ +G +GV+ P L A A
Sbjct: 184 DWAAIAAVREAVDVPLIANGDITCAHTARQALDRSGADGVMVGRGAQGRPWLLAQIAHAL 243
Query: 128 WIVGSEEISKDGNLDQADLLVE-YLKLCEKY--PVPWRMIRSHV 168
+ + E+ + L AD++ Y + + Y + R+ R H+
Sbjct: 244 YGTPAPEVPQGAEL--ADMVARHYQAMLDFYGRELGLRVARKHL 285
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 168 (64.2 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 43/153 (28%), Positives = 87/153 (56%)
Query: 1 MDNLPLVKSLVEKLALNLNVPV-SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 59
++NL L K+LV + N + S K R+ N + K AK+ E G +++HGRTR +
Sbjct: 113 LENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGVDFISIHGRTRKQ 172
Query: 60 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K AD+ +I + K +++IPV+ANG++ + ++ ++ + T C+G++ + + NP +
Sbjct: 173 LYSGK--ADYGSIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWI 229
Query: 120 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLK 152
F ++ + + E++ K+ L D ++++ K
Sbjct: 230 FYEIKSGKSV--DEKLKKEIILTHFDEMIKHYK 260
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 166 (63.5 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 2 DNL-PLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 59
+NL ++K++ E A+ + VS KIR+ + + I+ + +E AG + L +H RT+ E
Sbjct: 121 ENLYQIIKAVKE--AVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELTIHARTKLE 178
Query: 60 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
G K A W+ I VKNA+ IPV+ANG + ++ED KC E +GC ++ L P L
Sbjct: 179 --GYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGALTIPNL 236
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 166 (63.5 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 2 DNL-PLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 59
+NL ++K++ E A+ + VS KIR+ + + I+ + +E AG + L +H RT+ E
Sbjct: 121 ENLYQIIKAVKE--AVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELTIHARTKLE 178
Query: 60 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
G K A W+ I VKNA+ IPV+ANG + ++ED KC E +GC ++ L P L
Sbjct: 179 --GYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGALTIPNL 236
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 166 (63.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/118 (28%), Positives = 70/118 (59%)
Query: 7 VKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
+K ++ L NLN +P++CKIR+ Q+TI +++E G S + VH R E+ +
Sbjct: 156 IKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCRMIPERP--RD 213
Query: 66 RADWNAIKAV-KNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W+ ++ + NA +P++ANG++ D++K ++T + ++ A +++N ++F+
Sbjct: 214 PAHWDRLENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVVKNVSIFS 271
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 35/106 (33%), Positives = 60/106 (56%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW AI
Sbjct: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIG 187
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 188 DIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 164 (62.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 50/171 (29%), Positives = 82/171 (47%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
+ ++ L VPV+CKIRV + +DT+K + +E S L VHGR RDE+ K R
Sbjct: 131 IVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDERQPDKCR 190
Query: 67 ADWNAIKAVKNALR-IPVLANG---NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
D I+ V A++ IPV++NG + D +K T + A L P++F
Sbjct: 191 ID--EIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTETSSTMIARKALSTPSIFR- 247
Query: 123 FRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLG 173
++G LD+ + + +L+L +Y + M + V ++LG
Sbjct: 248 --------------REGCLDKYEDIRNFLELACQYDESYTMTKYVVQRILG 284
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 158 (60.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 6 LVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
L+ ++V ++ A+ ++PV+ K+R+ + N + A+ L D G + + VH RT+ DG
Sbjct: 118 LLHTIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTK--VDG 175
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K A W I ++ +++PV+ANG + +ED ++C E G ++ L+ P L
Sbjct: 176 YKPPAHWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDL 232
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 156 (60.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 38/117 (32%), Positives = 67/117 (57%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
+++ +++ + +NVPV+ K R + ++ + A++ ED G LA+HGRTR
Sbjct: 120 VIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--Y 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
K A++++IKAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 178 KGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 156 (60.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 38/117 (32%), Positives = 67/117 (57%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
+++ +++ + +NVPV+ K R + ++ + A++ ED G LA+HGRTR
Sbjct: 120 VIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--Y 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
K A++++IKAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 178 KGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 155 (59.6 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 56/209 (26%), Positives = 105/209 (50%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DG 62
+VKS++ ++ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G
Sbjct: 120 VVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNG 179
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+ A++++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 180 E---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF-- 234
Query: 123 FRTAEWIVGSEEISKDGNLDQAD-LLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRI 178
R + + + E+ L + LL +++ + P +R+ R HV W+ +
Sbjct: 235 -REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV-----SWY-L 287
Query: 179 QPGVREDLNAQNRLTFEFLYNLVDRLREL 207
Q D Q R TF + + ++L L
Sbjct: 288 QEHAPND---QFRRTFNAIEDASEQLEAL 313
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 151 (58.2 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 35/108 (32%), Positives = 61/108 (56%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LV+ +V+++ + P VS KIR+ +L T+ + E G S + VHGRT +
Sbjct: 132 NKPELVRDMVKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVE 191
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 106
E+ + AIK +K ++ IP++ANG++R +++ + TG +G
Sbjct: 192 ERHQP---VHYEAIKIIKESMSIPIVANGDIRSLKEAENVWHTTGTDG 236
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 153 (58.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 34/106 (32%), Positives = 60/106 (56%)
Query: 21 PVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79
PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K A W I V+ L
Sbjct: 135 PVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYKPPAYWEYITEVRERL 192
Query: 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125
IPV+ANG + + +D ++C++ TGC+ ++ + P L +T
Sbjct: 193 PIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKT 238
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 153 (58.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 34/106 (32%), Positives = 60/106 (56%)
Query: 21 PVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79
PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K A W I V+ L
Sbjct: 135 PVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYKPPAYWEYITEVRERL 192
Query: 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125
IPV+ANG + + +D ++C++ TGC+ ++ + P L +T
Sbjct: 193 PIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKT 238
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 149 (57.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 3 NLP-LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
N P LVK +V+++ + P VS KIR+ +L T+ + E G S + VHGRT +
Sbjct: 134 NKPELVKDMVKQVRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVE 193
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105
E+ + AIK +K ++ IPV+ANG++R +++ + TG +
Sbjct: 194 ERHQP---VHYEAIKIIKESMSIPVIANGDIRSLKEAENVWHMTGTD 237
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 153 (58.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRT 56
M+ L + +V + L+VP++ K+R +Q+ + A L D G +L+ +HGR+
Sbjct: 411 MNRLAKFQQIVRGMNQVLDVPLTVKLRT--GVQERVNLAHRLLPDLRDWGAALVTLHGRS 468
Query: 57 RDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
R+++ K ADW I+ A R +P+ NG+V ED + L+ TG GV+ A L
Sbjct: 469 REQRYTKL--ADWQYIEQCVAAARPMPLFGNGDVLSYEDANRALQ-TGVAGVMIARGALL 525
Query: 116 NPALFAGFRTAE-WIVGSEE 134
P LF + W + S E
Sbjct: 526 KPWLFTEIKEQRHWDISSSE 545
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 147 (56.8 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 18 LNVPVSCKIR--VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 75
L+VP++ KIR V N K ++ G SL+ +HGR+R+++ K ADW+ I
Sbjct: 438 LDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHGRSREQRYTKL--ADWDYINTC 495
Query: 76 KN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSE 133
A +P+ NG++ ED K ETG G++ A L P LF + + W + S
Sbjct: 496 AQLAAPVPLFGNGDILSYEDAMKA-RETGVSGIMVARGALIKPWLFTEIKESRHWDISST 554
Query: 134 E 134
E
Sbjct: 555 E 555
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 146 (56.5 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 39/123 (31%), Positives = 65/123 (52%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
L+VP++ KIR +Q+ + A L D G +L+ +HGR+R+++ K ADW I+
Sbjct: 428 LDVPLTVKIRT--GVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKL--ADWQYIE 483
Query: 74 -AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVG 131
V+ A +P+ NG++ ED + ++ TG G++ A L P LF + W +
Sbjct: 484 ECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDIS 542
Query: 132 SEE 134
S E
Sbjct: 543 SSE 545
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 142 (55.0 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 56/192 (29%), Positives = 87/192 (45%)
Query: 19 NVPVSCKIRV-FPNLQDT-IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76
++PV+ K R+ + T + ++ E G + +A+H RT ++ ADW I +K
Sbjct: 156 DIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGT--ADWEQIARLK 213
Query: 77 NALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 135
+R IPVL NG++ D + TGC+GV+ L P LFA A GS
Sbjct: 214 QHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAA--FTGSPAP 271
Query: 136 SKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRL 192
+ + AD++ + L + R IR H+ L F +R L A +
Sbjct: 272 TPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL-HGFPAGSALRRAL-AMVK- 328
Query: 193 TFEFLYNLVDRL 204
TF+ L L+DRL
Sbjct: 329 TFDELDCLLDRL 340
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 140 (54.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV-FPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV +++E + + VPV+ KIR + + ++ + K+ E AG L VHGRTR G
Sbjct: 120 LVANILEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTR--ACGF 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
A+++ I VK A+ IPV+ANG++ + L TG + V+ P L
Sbjct: 178 AGAAEYSTITEVKKAIGIPVIANGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWL 233
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 39/123 (31%), Positives = 64/123 (52%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
L+VP++ KIR +Q+ + A L D G +L+ +HGR+R+++ K ADW I+
Sbjct: 430 LDVPLTVKIRT--GVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKL--ADWQYIE 485
Query: 74 -AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVG 131
V A +P+ NG++ ED + ++ TG G++ A L P LF + W +
Sbjct: 486 QCVTAASPMPLFGNGDILSYEDANRAMK-TGVAGIMIARGALLKPWLFTEIKEQRHWDIS 544
Query: 132 SEE 134
S E
Sbjct: 545 SSE 547
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 39/123 (31%), Positives = 64/123 (52%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
L+VP++ KIR +Q+ + A L + G +L+ +HGR+R+++ K ADW I+
Sbjct: 423 LDVPLTVKIRT--GVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTKL--ADWQYIE 478
Query: 74 -AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVG 131
V A +P+ NG++ ED + ++ TG GV+ A L P LF + W +
Sbjct: 479 QCVTAASPMPLFGNGDILSYEDANRAMQ-TGVAGVMIARGALLKPWLFTEIKEQRHWDIS 537
Query: 132 SEE 134
S E
Sbjct: 538 SSE 540
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 139 (54.0 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 36/121 (29%), Positives = 63/121 (52%)
Query: 18 LNVPVSCKIR--VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI-KA 74
L+VP++ KIR V + K + + G S++ +HGR+R+++ + ADW+ I +
Sbjct: 408 LDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLHGRSREQRYTRV--ADWDYIAEC 465
Query: 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSE 133
K A +P+ NG++ ED + ++ TG G++ A L P LF + W + S
Sbjct: 466 AKIASPMPLFGNGDILSYEDANQAMQ-TGVSGIMIARGALIKPWLFTEIKEQRHWDISSS 524
Query: 134 E 134
E
Sbjct: 525 E 525
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 139 (54.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 38/123 (30%), Positives = 63/123 (51%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
L+VP++ K+R +Q+ + A L D G +L+ +HGR+R+++ + ADW I+
Sbjct: 415 LDVPLTVKMRT--GVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRL--ADWPYIE 470
Query: 74 -AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVG 131
K A +P+ NG++ ED C +TG G++ A L P LF + W +
Sbjct: 471 QCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQRHWDIS 529
Query: 132 SEE 134
S E
Sbjct: 530 SSE 532
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 128 (50.1 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 137 IEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVS 196
Query: 67 ADWNAIKAVKNAL 79
+ IKA+ + L
Sbjct: 197 CE--VIKAIADTL 207
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/123 (30%), Positives = 65/123 (52%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYA-KMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIK 73
L+VP++ K+R +Q+ + A ++L + G +L+ +HGR+R+++ + ADW I+
Sbjct: 418 LDVPLTVKMRT--GVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRL--ADWPYIE 473
Query: 74 -AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVG 131
K A +P+ NG++ ED C +TG G++ A L P LF + W +
Sbjct: 474 QCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQRHWDIS 532
Query: 132 SEE 134
S E
Sbjct: 533 SSE 535
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 126 (49.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAI 72
A+ ++PVS KIR+ + + +D + + A L VH RT+ G K W+ I
Sbjct: 129 AVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYKASEIKWHYI 186
Query: 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 187 DQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 126 (49.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAI 72
A+ ++PVS KIR+ + + +D + + A L VH RT+ G K W+ I
Sbjct: 129 AVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYKASEIKWHYI 186
Query: 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 187 DQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 128 (50.1 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
++ +LV ++ + +SCKIR+ +DT+K + + D G + VH RT ++ +
Sbjct: 140 ILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEP- 198
Query: 66 RADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
AD + + + R + +L NG+V D +E+ G +GVL A + N + F
Sbjct: 199 -ADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVLIARAAERNVSCF 255
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/139 (23%), Positives = 69/139 (49%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG----CSLLAVHGRT 56
M+ V+ L+ ++ +L+ P + KIR+ + +D K++ G C++ +HGR+
Sbjct: 430 MERPKKVEQLLRGISSSLSCPTTIKIRIGKS-EDAPTAHKLIPSLGEWGACAV-TLHGRS 487
Query: 57 RDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
R ++ + A+W+ +K IP++ NG++ + +DV + + ++ A L
Sbjct: 488 RAQRYSRL--ANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIK 545
Query: 117 PALFAGFRTA-EWIVGSEE 134
P +F + EW + + E
Sbjct: 546 PWIFTEIKEKREWDISASE 564
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 111 (44.1 bits), Expect = 0.00059, P = 0.00059
Identities = 37/125 (29%), Positives = 63/125 (50%)
Query: 2 DNLPLV-KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
D L L+ K LV+ + + P+S KIR+ QDT++ K L G + L VH R + +
Sbjct: 136 DTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCRKTEMR 195
Query: 61 DGKKFRADWNA-IKAVKNALRIPVLANGNVR---HMEDVQ-KCLEETGCEGVLSAESLLE 115
+ ++ D+ A I + A + ++ NG +R H D+Q + T G++ AE
Sbjct: 196 NREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTNIGGMI-AECAER 254
Query: 116 NPALF 120
+P +F
Sbjct: 255 DPTVF 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 217 0.00090 112 3 11 22 0.37 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 600 (64 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.51u 0.15s 18.66t Elapsed: 00:00:01
Total cpu time: 18.52u 0.15s 18.67t Elapsed: 00:00:01
Start: Thu May 9 15:15:32 2013 End: Thu May 9 15:15:33 2013