BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026945
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With
Flavin
Length = 318
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+ +L + +V +L +++ S K R+ + + ++L + G + +H RT +
Sbjct: 108 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS 167
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
RA+W A+ ++ RIP +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 168 FTG--RAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 223
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 155 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 211
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91
+ D ++ A E+ G +A+ T + F +++K V A+ IPVL G VR
Sbjct: 32 VGDPVEMAVRYEEEGADEIAILDITAAPEGRATF---IDSVKRVAEAVSIPVLVGGGVRS 88
Query: 92 MEDVQKCLEETGCEGVLSAESLLENPALFA 121
+ED L G + V + + NP L A
Sbjct: 89 LED-ATTLFRAGADKVSVNTAAVRNPQLVA 117
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 99 LEETGCEGVLSAESLLEN-PALFAGFRTA-EWIVGSEEISKDGNLDQADL-LVEYLKLCE 155
+E T + + S ++ L P F A EW V S +I NL+ A + +V +K CE
Sbjct: 149 VEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIR---NLESARVSMVGQVKQCE 205
Query: 156 KYPVPWRMIRSHVHKLLGEWFR 177
P WR+ + K WFR
Sbjct: 206 GKPYTWRIELAKTEKYWDGWFR 227
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 94
++LE+AG +LAVH T + G+K D + V+ RI V + + ++D
Sbjct: 121 RLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKD 175
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110
+KDG D I+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 475 DKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA 526
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110
+KDG D I+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 475 DKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA 526
>pdb|2Y88|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase (Variant D11n) With Bound Prfar
pdb|2Y89|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase A (Variant D11n)
Length = 244
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 42 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ--KCL 99
L+ GCS V T KDG + + + V + PV+A+G V ++D++ L
Sbjct: 158 LDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATL 214
Query: 100 EETGCEGVLSAESL 113
G EG + ++L
Sbjct: 215 THRGVEGAIVGKAL 228
>pdb|2Y85|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|3ZS4|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Prfar
Length = 244
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 42 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ--KCL 99
L+ GCS V T KDG + + + V + PV+A+G V ++D++ L
Sbjct: 158 LDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATL 214
Query: 100 EETGCEGVLSAESL 113
G EG + ++L
Sbjct: 215 THRGVEGAIVGKAL 228
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 50 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKVSINTAAVE 108
Query: 116 NPAL 119
NP+L
Sbjct: 109 NPSL 112
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 171 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKVSINTAAVE 229
Query: 116 NPAL 119
NP+L
Sbjct: 230 NPSL 233
>pdb|3TDN|A Chain A, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
Length = 247
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 55 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 113
Query: 116 NPAL 119
NP+L
Sbjct: 114 NPSL 117
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 176 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 234
Query: 116 NPAL 119
NP+L
Sbjct: 235 NPSL 238
>pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|B Chain B, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|C Chain C, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|D Chain D, Computationally Designed Tim-Barrel Protein, Halfflr
Length = 126
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 55 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 113
Query: 116 NPAL 119
NP+L
Sbjct: 114 NPSL 117
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 165 RSHVHKLLGEWFRIQPGVRED-LNAQNRLTFEFLYNLV 201
R+ V + +GE+F I P V ED LN R EF N V
Sbjct: 81 RTDVVQRVGEFFGIHPLVLEDILNVHQRPKVEFFENYV 118
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 39 AKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
AK+ E+AG +AV R D G AD ++ V NA+ IPV+A + H+
Sbjct: 34 AKIAEEAGA--VAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIV 91
Query: 94 DVQKCLEETGCEGVLSAESL 113
+ + LE G + + +E L
Sbjct: 92 EA-RVLEAMGVDYIDESEVL 110
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 39 AKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
AK+ E+AG +AV R D G AD ++ V NA+ IPV+A + H+
Sbjct: 31 AKIAEEAGA--VAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIV 88
Query: 94 DVQKCLEETGCEGVLSAESL 113
+ + LE G + + +E L
Sbjct: 89 EA-RVLEAMGVDYIDESEVL 107
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 165 RSHVHKLLGEWFRIQPGVRED-LNAQNRLTFEFLYNLV 201
R+ V + +GE+F I P V ED LN R EF N V
Sbjct: 72 RTDVVQRVGEFFGIHPLVLEDILNVHQRPKVEFFENYV 109
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 165 RSHVHKLLGEWFRIQPGVRED-LNAQNRLTFEFLYNLV 201
R+ V + +GE+F I P V ED LN R EF N V
Sbjct: 48 RTDVVQRVGEFFGIHPLVLEDILNVHQRPKVEFFENYV 85
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 153 LCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRED-LNAQNRLTFEF------LYNLV---- 201
+ YP WR + + + +WF VR+D L+A F+ +YN+V
Sbjct: 390 ITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRG 449
Query: 202 ----DRLRELGVRIPLY 214
R R GV +P++
Sbjct: 450 EWVISRQRVWGVPLPVF 466
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 5 PLVKSLVEKLALNLNVPVSCKIRVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
PL L ++ +NL + V + P L + ++AKM E+AG + + H + E
Sbjct: 55 PLDTYLNKQRIINLALEVGADA-IHPGYGFLAENAEFAKMCEEAGITFIGPHWKV-IELM 112
Query: 62 GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
G K R+ K V +PV+ ++G ++ +E+ + E G +L A + +
Sbjct: 113 GDKARS-----KEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGI 167
Query: 120 FAGFRTAEWIVGSEEISKDGN--LDQADLLVE 149
E + E+ S++ + DLL+E
Sbjct: 168 RICRNEEELVKNYEQASREAEKAFGRGDLLLE 199
>pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase
Length = 252
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 56 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100
T ++DG K D + V A+ +PV+A+G ME + +
Sbjct: 172 TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,566,542
Number of Sequences: 62578
Number of extensions: 264733
Number of successful extensions: 766
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 36
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)