BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026945
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 16/169 (9%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 16/169 (9%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)
Query: 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVR 198
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEIS 136
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 199 KAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW-------- 250
Query: 137 KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 --------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
+N L++S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKG 184
Query: 62 GKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
ADW I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +
Sbjct: 185 HFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRI 244
Query: 120 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGE 174
F S ++ +D D+ EYL + ++ + I+ H+ KL+
Sbjct: 245 FLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRP 295
Query: 175 WFRIQPGVREDL 186
I +R L
Sbjct: 296 LLSIHTDIRSKL 307
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
M+ L+ +L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K
Sbjct: 136 MEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195
Query: 61 DGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
K A+W IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP
Sbjct: 196 GQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPG 255
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGE 174
+F +T +K+ + D ++ EY ++ C++ ++SH K+L
Sbjct: 256 VFNVGQTK---------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRP 306
Query: 175 WFRIQPGVREDLNAQN 190
+ +R L N
Sbjct: 307 FLPHHTDIRSTLATMN 322
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++ +
Sbjct: 122 VSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVSV 178
Query: 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNL 141
P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 179 PIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP-------------- 224
Query: 142 DQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFE-FLYN 199
+D + +++L +Y + W + H+ +L F Q R N N RL + FL N
Sbjct: 225 --SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFNELNGRLAIDHFLNN 280
Query: 200 LVD 202
L+D
Sbjct: 281 LLD 283
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 13 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72
K L + KIR+ +L T +++E +G ++ VHGRTR +D F + +AI
Sbjct: 137 KSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVNLDAI 194
Query: 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 128
+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 195 REVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 6 LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
LV+ +V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +E+
Sbjct: 136 LVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ 195
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG
Sbjct: 196 P---VHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAG 252
Query: 123 F 123
+
Sbjct: 253 Y 253
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 6 LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
LV +V ++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 136 LVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQ 195
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG
Sbjct: 196 P---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252
Query: 123 F 123
+
Sbjct: 253 Y 253
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
+ +++V+ + ++VPV+ K R+ + +++A+ L+DAG +L +HGRTR + G
Sbjct: 152 VAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQ--GY 209
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG- 122
RA W I VK AL IPV+ANG++ +E CLEETG +GV+ + L P L
Sbjct: 210 NGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEI 269
Query: 123 ---FRTAE 127
F+T E
Sbjct: 270 EHFFKTGE 277
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65
+VK VE L +PVS KIR+ + + + L+ AG SL+A+H RT K G
Sbjct: 120 VVKETVEALK-PYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHART--AKQGFSG 176
Query: 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125
+A W+ IK K +P++ +G+V+ D+++ EET C+GV+ + L NP +F F+
Sbjct: 177 KALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKE 236
Query: 126 AEWI-VGSEEISKDGNLDQADLLVEYL 151
I VG +E D L++ ++ EY+
Sbjct: 237 KRDIEVGLKE-RMDFILEELSMMTEYM 262
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 8/130 (6%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+ +
Sbjct: 137 IEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDER--PQHP 194
Query: 67 ADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPALFA- 121
I+A+ L IPV+ANG +++ D++ + T V+ A + + NP++F
Sbjct: 195 VSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 122 -GFRTAEWIV 130
G R E ++
Sbjct: 255 DGLRPLEEVM 264
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 8/130 (6%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+ +
Sbjct: 137 IEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREER--PQHP 194
Query: 67 ADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPALF-- 120
IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP++F
Sbjct: 195 VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK 254
Query: 121 AGFRTAEWIV 130
G R E ++
Sbjct: 255 EGLRPLEEVM 264
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 80
+ KIR+ L +T++ + L DAG + +HGRTR + + A+ +AIK + +
Sbjct: 166 IETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAIKYIIENISD 223
Query: 81 --IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 128
+PV+ANG+ + D+++ + TG GV++ LL NPALFAG+ T W
Sbjct: 224 KNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 115/217 (52%), Gaps = 19/217 (8%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DG 62
LVK ++ K+ ++ VPV+ KIR + ++ ++ AK+ E G L +HGRTR +G
Sbjct: 120 LVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEG 179
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+ A+++ IKAVK L IP++ANG++ E + L+ T + ++ L NP L
Sbjct: 180 E---AEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPWL--- 233
Query: 123 FRTAEWIVGSEEISKDGNLDQ-ADLLVEYLK-LCEKYPVP--WRMIRSHVHKLLGEWFRI 178
FR E ++ + I + +L++ ++++++++ L + Y V R+ R HV L + +
Sbjct: 234 FRVMESLIEKDSIVLEPSLNEKCNVILQHIQELHQFYGVEKGCRIARKHVAWYL-QGIQP 292
Query: 179 QPGVREDLNA-----QNRLTFEFLYNLVDRLRELGVR 210
P R+ NA + + E +NL+ +E VR
Sbjct: 293 NPVFRQAFNAITDPKEQLIALEGFFNLILMDKEKNVR 329
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV ++ + ++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D
Sbjct: 123 LVSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTR--ADLY 180
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
A+++ I A+K A+ IPV ANG++ E + LE TG +G+L + P + F
Sbjct: 181 TGEAEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWI---F 237
Query: 124 RTAEWIVGSEEISKDGNLDQAD-LLVEYLKLCEKY---PVPWRMIRSHVHKLL-----GE 174
R E + + E LD+ + +L+E+L + + R+ R HV L G+
Sbjct: 238 REIEHYLRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGK 297
Query: 175 WFRIQPGVREDLNAQ 189
FR + ED AQ
Sbjct: 298 EFRARFNALEDTQAQ 312
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 30/198 (15%)
Query: 7 VKSLVEKLALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 64
+ +V + +N PV+ K+R+ + +K A+ +E AG +A+HGRTR + +
Sbjct: 123 IYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQM--YE 180
Query: 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124
A+W+ IK VK ++ IPV+ NG+V+ +D ++ L+ETG +GV+ + L NP + +R
Sbjct: 181 GTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMI--YR 238
Query: 125 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY----------PVPWRMIRSHVHKLLGE 174
T +++ + G L + + E + +C+ + V R +R H
Sbjct: 239 TVQYL-------ETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKH-----AA 286
Query: 175 WFRIQPGVREDLNAQNRL 192
W+ GV+ + N +N +
Sbjct: 287 WYL--KGVKGNANVRNEI 302
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M + L + E + +P++ K+R+ N ++ AK+ E +G ++ VHGRTR
Sbjct: 117 MRDEQLAAKIFEATVKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRC 176
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
+ ADW+ I++VK A++IPV+ANG++ + ++ L+++G +G++ P
Sbjct: 177 QF--YSGNADWDFIRSVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPW 234
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150
L + + A ++ EE +Q D++ E+
Sbjct: 235 LVS--QIAHYLKTGEEKPAPSIAEQLDIVTEH 264
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 9 SLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66
L+E +++PV+ K+R+ N + A+ E +G L+ +HGRTR + + R
Sbjct: 117 GLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQF--YEGR 174
Query: 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
ADW+AI+AV+ + +P++ANG+V D Q+ L +G + V+ P AG
Sbjct: 175 ADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRP-WHAGV--- 230
Query: 127 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 176
+ G+ E ++ D AD+ VE+ ++ + IR H K LG W+
Sbjct: 231 --LAGAAEPRRE---DIADIAVEHYRMMLDFYGEAVAIR-HARKHLG-WY 273
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M + L + E + +PV+ K+R+ N ++ AK+ E +G ++ VHGRTR
Sbjct: 117 MKDEQLAAKIFEATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRC 176
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
+ ADW+ I++VK +++IPV+ANG++ + ++ L+++G +G++ P
Sbjct: 177 QF--YSGNADWDFIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPW 234
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 157
L + + ++ EE S +Q D++ E+ + Y
Sbjct: 235 LIS--QIDHYLKTGEEKSAPSIAEQLDIVTEHYEAILDY 271
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LVK ++ + ++VPV+ KIR P ++ ++ AK+ ED G L +HGRTR
Sbjct: 120 LVKQILSTVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGRTR----AC 175
Query: 64 KFR--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
F A++++I+AVK A+ IP++ANG++ + L+ TG + ++ + P +F
Sbjct: 176 LFNGFAEYDSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIFR 235
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRI 178
+ ++ E ++ ++ LL+E+++ + P +R+ R HV L E
Sbjct: 236 EIQ--HYLDTGELLAPLPLVEVKRLLIEHIRELHDFYGPGKGFRIARKHVSWYLQE---- 289
Query: 179 QPGVREDLNAQNRLTFEFLYNLVDRLREL 207
N Q R TF + + ++L L
Sbjct: 290 -----HAPNDQFRRTFNAIEDASEQLEAL 313
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV +++ + ++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D
Sbjct: 123 LVAEILDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTR--ADLY 180
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
A++ I A+K A+ IPV ANG++ E +K +E+TG + +L + P +F
Sbjct: 181 TGEAEYETIAAIKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
>sp|P44606|DUSC_HAEIN tRNA-dihydrouridine synthase C OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusC PE=3 SV=1
Length = 310
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Query: 21 PVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD---WNAIKAVK 76
PVS K+R+ + ++ + A +E G + + VHGRT+ DG +RAD W I V+
Sbjct: 135 PVSVKVRLGWDDISQAFEIADAVEQGGATEITVHGRTK--ADG--YRADRINWKKISEVR 190
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
L IPV+ANG + H +D Q CL +TGC+ ++ L P L
Sbjct: 191 ERLSIPVIANGEIWHWQDGQDCLSQTGCQDLMVGRGALNIPNL 233
>sp|Q8ZGV2|DUSC_YERPE tRNA-dihydrouridine synthase C OS=Yersinia pestis GN=dusC PE=3 SV=2
Length = 312
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 13 KLALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWN 70
+ A+ ++PV+ KIR+ + D + A ++ AG + LAVHGRT++ DG + R +W
Sbjct: 127 RAAVPAHLPVTVKIRLGWDSGDRQFEIADAVQQAGATELAVHGRTKE--DGYQAERINWQ 184
Query: 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
AI ++ L IPV+ANG + + Q+C++ TGC+ V+ L P L
Sbjct: 185 AIGEIRQRLTIPVIANGEIWDYQSAQECMKVTGCDAVMLGRGALNVPNL 233
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV ++ + +NVPV+ KIR + ++ A++ +D G + LAVHGRTRD+
Sbjct: 120 LVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--Y 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
A++ I +K AL+IPV+ANG++ + + L ETG + V+ + P +F
Sbjct: 178 TGSAEYATIAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWIFG-- 235
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV 168
A ++ E + D L+ +L+ + P R+ R H+
Sbjct: 236 EVAHFLATGEVLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHL 283
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 11/174 (6%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M + L ++E A + +PV+ K+R + + + A++ E+ G L+ VHGRTR+
Sbjct: 117 MRDEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTRE 176
Query: 59 E-KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117
+ +G ADW+ I++VK A+ IPV+ NG++ + V + L E+G +GV+ P
Sbjct: 177 QFYNGT---ADWSFIRSVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRP 233
Query: 118 ALFAGFRTAEWIVGSEEISKDGNLDQADLLVE-YLKLCEKYPVPW--RMIRSHV 168
A + +I E + +Q D L+E Y + Y V R+ R H+
Sbjct: 234 WFPA--QVMHYIRTGERLPDPPLHEQLDTLLEHYDAMLTHYGVEGGLRVARKHI 285
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 27/212 (12%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG 62
LV+ ++ ++ +NVPV+ KIR + ++ ++ K+ E G L VHGRTR +G
Sbjct: 120 LVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEG 179
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+ A+++ IKAVK A+ IPV+ANG++ + L TG + ++ + L NP L
Sbjct: 180 E---AEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL--- 233
Query: 123 FRTAEWIVGSEEISKDGNLDQ--ADLLVEYLKLCEKY--PVPWRMIRSHVHKLLGEWF-- 176
F+ E ++ IS+ +L + +L +L + Y +R+ R HV W+
Sbjct: 234 FQAVENLIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHV-----AWYLQ 288
Query: 177 RIQPG--VREDLNA-----QNRLTFEFLYNLV 201
IQP ++ NA + + E +NL+
Sbjct: 289 GIQPDSVFKQTFNAISDPKEQLIVLEDFFNLI 320
>sp|Q8EJR8|DUSB_SHEON tRNA-dihydrouridine synthase B OS=Shewanella oneidensis (strain
MR-1) GN=dusB PE=3 SV=1
Length = 322
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD 58
M N PLVK +++ + ++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR
Sbjct: 115 MQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR- 173
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
+ K A+++ IKA+K + IPV+ANG++ E + L+ TG + ++ P
Sbjct: 174 -QCMYKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPW 232
Query: 119 LF 120
+F
Sbjct: 233 IF 234
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG 62
LV +++ + ++VPV+ KIR ++ ++ AK+ E AG S L +HGRTRD +G
Sbjct: 120 LVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNG 179
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ A++ +IKAVK A+ +P++ANG++ + + L+ TG + V+ P LF
Sbjct: 180 Q---AEYESIKAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPWLF 234
>sp|Q8FFV5|DUSC_ECOL6 tRNA-dihydrouridine synthase C OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusC PE=3 SV=2
Length = 316
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW AI
Sbjct: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIG 187
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 188 EIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>sp|Q7UC91|DUSC_SHIFL tRNA-dihydrouridine synthase C OS=Shigella flexneri GN=dusC PE=3
SV=1
Length = 315
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW AI
Sbjct: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIG 187
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 188 EIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
L + E + +PV+ K+R+ N ++ AK+ ++G ++ VHGRTR +
Sbjct: 122 LAAKIFEATVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQFYSG 181
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
A+W+ I+ VK A++IPV+ANG++ + ++ L+ +G +G++ + P L +
Sbjct: 182 --NANWDFIRTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGKPWLIS-- 237
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEY 150
+ A ++ +E +Q D++ ++
Sbjct: 238 QIAYYLKTGKEKPAPSIAEQLDIITKH 264
>sp|P33371|DUSC_ECOLI tRNA-dihydrouridine synthase C OS=Escherichia coli (strain K12)
GN=dusC PE=3 SV=1
Length = 315
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW AI
Sbjct: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIG 187
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 188 DIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>sp|Q8XEC6|DUSC_ECO57 tRNA-dihydrouridine synthase C OS=Escherichia coli O157:H7 GN=dusC
PE=3 SV=1
Length = 316
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW AI
Sbjct: 129 AVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQAIG 187
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 188 EIRQRLNIPVIANGEIWDWQSAQECMAISGCDSVMIGRGALNIPNL 233
>sp|Q87N01|DUSC_VIBPA tRNA-dihydrouridine synthase C OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusC PE=3 SV=1
Length = 322
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
L+ S+V+ A+ N+PVS KIR+ + N +D + ++ AG + L VH RT+ +
Sbjct: 118 LIHSVVKACRDAVPANIPVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTK-QGGY 176
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K W I ++ IP++ANG + + ED Q+C+E TG + ++ P L
Sbjct: 177 KASEIKWEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNL 233
>sp|Q8Z5B2|DUSC_SALTI tRNA-dihydrouridine synthase C OS=Salmonella typhi GN=dusC PE=3
SV=1
Length = 312
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 13 KLALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---D 68
+ A+ ++PV+ K+R+ + D + A ++ AG S L VHGRT+ + +RA D
Sbjct: 127 RAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTK----AQGYRAEHID 182
Query: 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
W AI ++ L IPV+ANG + + Q C+ +GC+ V+ L P L
Sbjct: 183 WQAIGEIRQRLTIPVIANGEIWDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|Q8ZNM4|DUSC_SALTY tRNA-dihydrouridine synthase C OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusC PE=3 SV=1
Length = 312
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 13 KLALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---D 68
+ A+ ++PV+ K+R+ + D + A ++ AG S L VHGRT+ + +RA D
Sbjct: 127 RAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTK----AQGYRAEHID 182
Query: 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
W AI ++ L IPV+ANG + + Q C+ +GC+ V+ L P L
Sbjct: 183 WQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV ++ + ++VPV+ KIR + ++ A++ +D G + LAVHGRTRD+
Sbjct: 120 LVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--Y 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A++ I +K AL+IPV+ANG++ + + L +TG + V+ + P +F
Sbjct: 178 TGTAEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWIFG 235
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LVKS++ + ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR
Sbjct: 120 LVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ A++++I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 180 E--AEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LVKS++ + ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR
Sbjct: 120 LVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ A++++I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 180 E--AEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
L + E + +PV+ K+R+ ++ AK+ E +G ++ VHGRTR +
Sbjct: 122 LAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQF--Y 179
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
ADW IK VK A++IPV+ANG++ + ++ LE++ +GV+ P L +
Sbjct: 180 SGNADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLIS-- 237
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 157
+ ++ EE Q D+++E+ + Y
Sbjct: 238 QIDHYLKTGEEKPAPSIESQLDIVLEHYQAIVDY 271
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LVK ++ + ++VPV+ KIR P ++ I+ A++ E+ G L +HGRTR
Sbjct: 120 LVKQILSAVVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTRSCLFNG 179
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ A++++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 180 E--AEYDSIRAVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
+++ +++ + ++VPV+ K R + ++ ++ AK+ ED G LA+HGRT+
Sbjct: 120 IIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTKACM--Y 177
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
K A++++IKAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 178 KGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
L + E + +PV+ K+R+ N ++ A + +G ++ VHGRTR +
Sbjct: 122 LATKIFEATVKAVKIPVTVKMRMGWDDNTKNAPTLAVIAASSGVQMVTVHGRTRCQFYSG 181
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
A+W+ I+ VK A++IPV+ANG++ + ++ L+++G +G++ + P L +
Sbjct: 182 --NANWDFIRVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGKPWLIS-- 237
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEY 150
+ A ++ +E +Q D+++++
Sbjct: 238 QIAYYLKTGKEKPAPSIAEQLDIIIKH 264
>sp|Q9CJW1|DUSC_PASMU tRNA-dihydrouridine synthase C OS=Pasteurella multocida (strain
Pm70) GN=dusC PE=3 SV=1
Length = 312
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 20 VPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD---WNAIKAV 75
+PVS K+R+ + N + + A ++ G + + +HGRT+ DG +RAD W I V
Sbjct: 134 LPVSVKVRLGWDNSEQAFEIADAVQQGGATEITIHGRTK--MDG--YRADRINWAKINDV 189
Query: 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ L IPV+ANG + + Q CL ETGC+ ++ L P L
Sbjct: 190 RQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIPNL 233
>sp|Q88LF2|DUSC_PSEPK tRNA-dihydrouridine synthase C OS=Pseudomonas putida (strain
KT2440) GN=dusC PE=3 SV=1
Length = 323
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73
A+ N+PV+ K+R+ F + ++ A L + G + L VH RT+ E G K A W +
Sbjct: 129 AVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVE--GYKPPAHWEWVA 186
Query: 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
V++ +++PV ANG + ++D ++C E +G E ++ L+ P L
Sbjct: 187 RVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPDL 232
>sp|Q7VKU5|DUSC_HAEDU tRNA-dihydrouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusC PE=3 SV=1
Length = 325
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 21 PVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNA 78
PVS K+R+ + + A ++ AG + VHGRT+ +DG + R +W AI ++
Sbjct: 140 PVSVKMRLGWDCASQCFEIADAIQQAGADEITVHGRTK--QDGYRAERINWQAIGQIQQR 197
Query: 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
L IPV+ANG + QKC E T C G++ L P L
Sbjct: 198 LNIPVIANGEILDFNSAQKCREITACCGLMIGRGALNTPNL 238
>sp|Q884C6|DUSC_PSESM tRNA-dihydrouridine synthase C OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusC PE=3 SV=1
Length = 317
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 6 LVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
L+ ++V ++ A+ ++PV+ K+R+ + N + A+ L D G + + VH RT+ DG
Sbjct: 118 LLHTIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTK--VDG 175
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K A W I ++ +++PV+ANG + +ED ++C E G ++ L+ P L
Sbjct: 176 YKPPAHWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDL 232
>sp|Q8EFG7|DUSC_SHEON tRNA-dihydrouridine synthase C OS=Shewanella oneidensis (strain
MR-1) GN=dusC PE=3 SV=1
Length = 315
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 21 PVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79
PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K A W I V+ L
Sbjct: 135 PVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYKPPAYWEYITEVRERL 192
Query: 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
IPV+ANG + + +D ++C++ TGC+ ++ + P L +T
Sbjct: 193 PIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTG 239
>sp|Q8XYX1|DUSC_RALSO tRNA-dihydrouridine synthase C OS=Ralstonia solanacearum (strain
GMI1000) GN=dusC PE=3 SV=1
Length = 326
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 13 KLALNLNVPVSCKIRVFPNLQDT---IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69
+ A+ + V+ K+R+ + DT I A L + G + L VH RTRD G + A W
Sbjct: 128 RAAVPARIAVTAKMRL--GVSDTSLAIACATALAEGGAASLVVHARTRDH--GYRPPAHW 183
Query: 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ I + +A+R+PV+ANG V ++D +C +GC+ V+ + +P L
Sbjct: 184 DWIARIADAVRVPVVANGEVWTVDDWARCRAVSGCDDVMIGRGAVSDPFL 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,322,851
Number of Sequences: 539616
Number of extensions: 3556889
Number of successful extensions: 11586
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 431
Number of HSP's that attempted gapping in prelim test: 11005
Number of HSP's gapped (non-prelim): 909
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)