Query 026945
Match_columns 230
No_of_seqs 251 out of 2443
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0042 tRNA-dihydrouridine sy 100.0 3.4E-42 7.3E-47 305.8 21.3 198 1-207 117-320 (323)
2 PRK10415 tRNA-dihydrouridine s 100.0 1.1E-39 2.3E-44 290.1 21.9 199 1-206 115-318 (321)
3 PRK10550 tRNA-dihydrouridine s 100.0 2.7E-39 5.8E-44 286.2 22.2 191 1-204 113-310 (312)
4 KOG2335 tRNA-dihydrouridine sy 100.0 2.1E-39 4.6E-44 284.4 21.3 204 1-218 123-331 (358)
5 PF01207 Dus: Dihydrouridine s 100.0 5.6E-40 1.2E-44 290.5 11.9 194 1-202 104-302 (309)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 3.8E-37 8.3E-42 273.0 20.7 198 1-206 105-314 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 1.8E-35 4E-40 262.8 21.5 199 1-206 113-316 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 3.7E-33 8.1E-38 249.2 20.0 184 1-190 115-309 (333)
9 KOG2333 Uncharacterized conser 99.9 4.6E-26 1E-30 205.4 15.2 162 1-171 371-543 (614)
10 TIGR00736 nifR3_rel_arch TIM-b 99.9 8E-24 1.7E-28 179.6 13.4 109 1-116 117-226 (231)
11 cd02801 DUS_like_FMN Dihydrour 99.9 5.8E-24 1.3E-28 180.1 12.5 122 2-125 106-228 (231)
12 cd02911 arch_FMN Archeal FMN-b 99.9 7.7E-24 1.7E-28 180.6 12.2 111 1-124 122-232 (233)
13 KOG2334 tRNA-dihydrouridine sy 99.9 4.2E-22 9.2E-27 177.6 14.6 167 1-184 131-301 (477)
14 TIGR01037 pyrD_sub1_fam dihydr 99.9 4.6E-21 1E-25 168.9 12.8 122 1-125 139-278 (300)
15 cd02940 DHPD_FMN Dihydropyrimi 99.8 3.4E-20 7.4E-25 163.6 11.9 119 1-124 150-296 (299)
16 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 1.6E-19 3.4E-24 158.2 12.8 122 2-124 145-287 (289)
17 cd04734 OYE_like_3_FMN Old yel 99.8 1.1E-19 2.5E-24 163.1 11.9 125 3-127 190-332 (343)
18 cd04738 DHOD_2_like Dihydrooro 99.8 2E-19 4.4E-24 160.5 11.7 123 1-124 179-324 (327)
19 PRK05286 dihydroorotate dehydr 99.8 2E-19 4.4E-24 161.5 10.2 123 2-125 189-334 (344)
20 PRK13523 NADPH dehydrogenase N 99.8 3.6E-19 7.8E-24 159.4 11.7 124 3-126 191-321 (337)
21 cd04740 DHOD_1B_like Dihydroor 99.8 9.4E-19 2E-23 153.9 13.4 121 2-125 137-275 (296)
22 cd04741 DHOD_1A_like Dihydroor 99.8 8.6E-19 1.9E-23 154.3 13.0 123 2-125 140-288 (294)
23 PRK07259 dihydroorotate dehydr 99.8 1.1E-18 2.4E-23 153.9 13.3 121 2-125 140-278 (301)
24 cd02931 ER_like_FMN Enoate red 99.8 2.7E-18 5.8E-23 156.3 13.7 124 3-126 200-351 (382)
25 cd04733 OYE_like_2_FMN Old yel 99.8 2.2E-18 4.7E-23 154.5 12.6 123 3-125 198-337 (338)
26 PRK08318 dihydropyrimidine deh 99.8 1.7E-18 3.7E-23 159.4 11.5 120 1-125 150-298 (420)
27 cd02803 OYE_like_FMN_family Ol 99.7 1.5E-17 3.2E-22 148.0 13.4 122 3-124 190-325 (327)
28 PRK14024 phosphoribosyl isomer 99.7 1.8E-17 3.9E-22 142.1 12.1 118 1-122 108-234 (241)
29 cd02932 OYE_YqiM_FMN Old yello 99.7 2.1E-17 4.5E-22 148.0 12.3 123 2-124 202-334 (336)
30 cd02933 OYE_like_FMN Old yello 99.7 3.8E-17 8.2E-22 146.5 12.9 119 3-126 201-330 (338)
31 cd04735 OYE_like_4_FMN Old yel 99.7 3.2E-17 7E-22 147.8 10.1 123 3-126 193-329 (353)
32 cd02930 DCR_FMN 2,4-dienoyl-Co 99.7 1.3E-16 2.8E-21 143.9 10.9 123 3-126 186-322 (353)
33 PRK07565 dihydroorotate dehydr 99.7 5.1E-16 1.1E-20 139.0 13.0 118 4-124 150-283 (334)
34 cd04739 DHOD_like Dihydroorota 99.7 5.6E-16 1.2E-20 138.3 13.1 118 4-124 148-281 (325)
35 PRK08255 salicylyl-CoA 5-hydro 99.7 7E-16 1.5E-20 151.6 13.4 122 3-124 600-732 (765)
36 cd04747 OYE_like_5_FMN Old yel 99.7 8.2E-16 1.8E-20 138.8 12.4 122 3-126 193-344 (361)
37 cd02929 TMADH_HD_FMN Trimethyl 99.6 1.6E-15 3.4E-20 137.6 12.3 123 3-126 199-335 (370)
38 PRK00748 1-(5-phosphoribosyl)- 99.6 1E-14 2.2E-19 123.8 11.7 112 2-116 108-226 (233)
39 cd04731 HisF The cyclase subun 99.6 1.7E-14 3.6E-19 123.6 12.4 115 1-118 104-231 (243)
40 TIGR01304 IMP_DH_rel_2 IMP deh 99.6 1.4E-14 3.1E-19 130.8 12.1 106 2-115 116-221 (369)
41 PRK01033 imidazole glycerol ph 99.6 2.5E-14 5.5E-19 123.8 12.5 112 1-116 107-232 (258)
42 TIGR03572 WbuZ glycosyl amidat 99.5 7.4E-14 1.6E-18 118.8 12.7 109 1-113 107-230 (232)
43 cd04732 HisA HisA. Phosphorib 99.5 5E-14 1.1E-18 119.6 11.0 116 1-120 106-229 (234)
44 COG0167 PyrD Dihydroorotate de 99.5 7.7E-14 1.7E-18 122.9 11.8 121 2-125 144-286 (310)
45 cd02809 alpha_hydroxyacid_oxid 99.5 1.2E-13 2.5E-18 122.1 11.7 98 8-114 161-260 (299)
46 TIGR00007 phosphoribosylformim 99.5 2E-13 4.2E-18 115.9 12.3 110 2-116 106-224 (230)
47 TIGR01036 pyrD_sub2 dihydrooro 99.5 9.6E-14 2.1E-18 124.4 10.2 122 2-124 186-332 (335)
48 PRK02083 imidazole glycerol ph 99.5 4.7E-13 1E-17 115.4 11.9 113 1-116 107-233 (253)
49 PRK13585 1-(5-phosphoribosyl)- 99.5 5.9E-13 1.3E-17 113.7 12.4 119 1-123 109-235 (241)
50 COG1902 NemA NADH:flavin oxido 99.5 8E-13 1.7E-17 119.3 13.3 123 4-126 199-334 (363)
51 PRK08649 inosine 5-monophospha 99.5 5.1E-13 1.1E-17 120.9 11.9 102 3-113 116-218 (368)
52 TIGR00735 hisF imidazoleglycer 99.5 6.3E-13 1.4E-17 114.7 12.0 112 2-116 108-235 (254)
53 PLN02826 dihydroorotate dehydr 99.4 3.5E-12 7.6E-17 116.8 13.2 123 1-124 235-385 (409)
54 PRK10605 N-ethylmaleimide redu 99.4 4E-12 8.8E-17 115.0 13.4 118 4-126 209-337 (362)
55 PRK02083 imidazole glycerol ph 99.4 1.6E-12 3.6E-17 112.0 9.1 89 33-125 30-118 (253)
56 cd04731 HisF The cyclase subun 99.4 2.4E-12 5.3E-17 110.2 9.1 89 33-125 27-115 (243)
57 PLN02495 oxidoreductase, actin 99.4 6E-12 1.3E-16 114.3 11.7 121 2-125 165-315 (385)
58 PF00724 Oxidored_FMN: NADH:fl 99.4 1.5E-12 3.2E-17 117.0 7.6 123 4-126 199-337 (341)
59 PRK02506 dihydroorotate dehydr 99.4 4.1E-12 9E-17 112.8 10.0 122 3-125 141-286 (310)
60 TIGR02151 IPP_isom_2 isopenten 99.3 7.3E-12 1.6E-16 112.2 11.5 110 4-117 164-290 (333)
61 TIGR02708 L_lactate_ox L-lacta 99.3 1.2E-11 2.6E-16 111.6 11.1 99 8-115 217-317 (367)
62 PRK05458 guanosine 5'-monophos 99.3 5.2E-11 1.1E-15 106.0 13.8 170 3-199 123-310 (326)
63 PF01180 DHO_dh: Dihydroorotat 99.3 1.6E-11 3.4E-16 108.2 10.1 122 3-125 146-289 (295)
64 cd04737 LOX_like_FMN L-Lactate 99.3 3.2E-11 6.9E-16 108.5 10.0 103 5-118 207-313 (351)
65 PRK05437 isopentenyl pyrophosp 99.3 1E-10 2.2E-15 105.6 13.3 110 3-116 170-296 (352)
66 COG0106 HisA Phosphoribosylfor 99.3 7E-11 1.5E-15 100.2 11.5 114 2-121 109-232 (241)
67 TIGR00735 hisF imidazoleglycer 99.2 3.6E-11 7.9E-16 103.8 9.0 89 33-125 30-118 (254)
68 cd04732 HisA HisA. Phosphorib 99.2 4.3E-11 9.4E-16 101.5 9.3 89 33-125 29-117 (234)
69 cd02811 IDI-2_FMN Isopentenyl- 99.2 1.2E-10 2.7E-15 104.0 12.4 110 3-116 162-290 (326)
70 PRK04180 pyridoxal biosynthesi 99.2 1.8E-10 4E-15 99.9 10.9 51 66-117 189-241 (293)
71 PLN02411 12-oxophytodienoate r 99.2 3.1E-10 6.6E-15 103.8 12.8 122 4-126 215-358 (391)
72 TIGR03151 enACPred_II putative 99.1 8E-10 1.7E-14 98.0 11.9 98 10-119 101-199 (307)
73 cd04729 NanE N-acetylmannosami 99.1 8.6E-10 1.9E-14 93.1 11.5 103 6-118 110-214 (219)
74 cd04722 TIM_phosphate_binding 99.1 2.1E-09 4.6E-14 87.0 12.1 102 4-111 98-200 (200)
75 TIGR01919 hisA-trpF 1-(5-phosp 99.1 1.2E-09 2.7E-14 93.8 11.1 118 1-121 107-236 (243)
76 TIGR00343 pyridoxal 5'-phospha 99.1 1.5E-09 3.2E-14 94.0 11.2 48 67-115 184-233 (287)
77 PRK01130 N-acetylmannosamine-6 99.1 1.4E-09 3.1E-14 91.8 10.6 102 5-116 105-208 (221)
78 COG0107 HisF Imidazoleglycerol 99.0 1.5E-09 3.3E-14 91.0 7.3 90 31-124 28-117 (256)
79 TIGR03572 WbuZ glycosyl amidat 99.0 2.9E-09 6.4E-14 90.5 9.2 89 33-125 30-118 (232)
80 TIGR01306 GMP_reduct_2 guanosi 99.0 7.4E-09 1.6E-13 92.0 11.9 103 5-115 122-232 (321)
81 PRK13587 1-(5-phosphoribosyl)- 98.9 1.4E-08 3E-13 86.8 12.7 108 2-115 110-226 (234)
82 cd00381 IMPDH IMPDH: The catal 98.9 1E-08 2.2E-13 91.7 11.1 109 3-120 118-236 (325)
83 cd02808 GltS_FMN Glutamate syn 98.9 2.6E-08 5.7E-13 91.2 13.9 112 2-117 196-321 (392)
84 PLN02446 (5-phosphoribosyl)-5- 98.9 1.9E-08 4.1E-13 86.9 12.1 116 3-121 121-251 (262)
85 PF00977 His_biosynth: Histidi 98.9 1.1E-08 2.3E-13 87.2 10.5 111 2-116 107-226 (229)
86 PRK14114 1-(5-phosphoribosyl)- 98.9 2E-08 4.4E-13 86.2 12.1 112 1-118 106-231 (241)
87 cd04730 NPD_like 2-Nitropropan 98.9 2.4E-08 5.2E-13 84.7 12.3 101 10-119 94-194 (236)
88 PRK00748 1-(5-phosphoribosyl)- 98.9 8.1E-09 1.8E-13 87.6 9.1 89 33-125 30-118 (233)
89 cd02922 FCB2_FMN Flavocytochro 98.9 1.4E-08 3.1E-13 91.3 10.9 107 3-118 197-308 (344)
90 cd04727 pdxS PdxS is a subunit 98.9 1.7E-08 3.6E-13 87.5 10.7 103 7-117 100-232 (283)
91 PF04131 NanE: Putative N-acet 98.9 1.5E-08 3.2E-13 83.1 9.5 105 3-121 77-183 (192)
92 PRK13585 1-(5-phosphoribosyl)- 98.8 1.3E-08 2.8E-13 86.9 8.7 88 34-125 33-120 (241)
93 cd04723 HisA_HisF Phosphoribos 98.8 6.4E-08 1.4E-12 82.6 12.5 109 2-117 112-225 (233)
94 cd04736 MDH_FMN Mandelate dehy 98.8 3.2E-08 6.8E-13 89.4 11.0 105 3-116 220-324 (361)
95 PRK13586 1-(5-phosphoribosyl)- 98.8 6.4E-08 1.4E-12 82.7 12.2 108 2-116 107-224 (232)
96 PLN02535 glycolate oxidase 98.8 3E-08 6.4E-13 89.7 10.4 107 3-118 207-315 (364)
97 PRK14024 phosphoribosyl isomer 98.8 3E-08 6.6E-13 85.0 8.8 87 34-125 33-119 (241)
98 cd03332 LMO_FMN L-Lactate 2-mo 98.8 4.5E-08 9.8E-13 89.1 10.3 103 4-115 238-342 (383)
99 TIGR00734 hisAF_rel hisA/hisF 98.8 1.1E-07 2.5E-12 80.5 12.1 103 2-116 113-219 (221)
100 COG0107 HisF Imidazoleglycerol 98.8 5E-08 1.1E-12 82.0 9.6 108 1-111 107-230 (256)
101 PLN02979 glycolate oxidase 98.8 6.4E-08 1.4E-12 87.1 10.4 103 4-115 208-312 (366)
102 PRK04128 1-(5-phosphoribosyl)- 98.7 4.6E-08 1E-12 83.3 8.3 85 34-124 31-115 (228)
103 PRK13587 1-(5-phosphoribosyl)- 98.7 5.3E-08 1.1E-12 83.2 8.5 88 34-125 32-120 (234)
104 PRK01033 imidazole glycerol ph 98.7 6.5E-08 1.4E-12 83.8 9.2 89 33-125 30-118 (258)
105 PF01070 FMN_dh: FMN-dependent 98.7 1.2E-07 2.7E-12 85.7 10.5 103 4-115 210-314 (356)
106 PRK11197 lldD L-lactate dehydr 98.7 1.2E-07 2.6E-12 86.2 10.4 100 8-116 234-335 (381)
107 PLN02493 probable peroxisomal 98.7 1.3E-07 2.9E-12 85.5 10.4 102 5-115 210-313 (367)
108 PRK07695 transcriptional regul 98.7 1.5E-07 3.2E-12 78.4 9.9 79 37-117 106-184 (201)
109 PF01645 Glu_synthase: Conserv 98.7 1.9E-07 4.2E-12 84.4 11.3 111 2-116 185-309 (368)
110 TIGR00007 phosphoribosylformim 98.7 1.2E-07 2.5E-12 80.5 9.1 89 33-125 28-116 (230)
111 cd00331 IGPS Indole-3-glycerol 98.7 5.3E-07 1.1E-11 75.9 12.6 101 5-119 108-210 (217)
112 cd04728 ThiG Thiazole synthase 98.7 1.6E-07 3.4E-12 80.1 9.3 76 36-115 134-209 (248)
113 PRK14114 1-(5-phosphoribosyl)- 98.6 1.4E-07 3.1E-12 81.0 8.5 86 33-123 30-115 (241)
114 PRK00208 thiG thiazole synthas 98.6 2.5E-07 5.5E-12 78.9 9.3 76 36-115 134-209 (250)
115 TIGR02129 hisA_euk phosphoribo 98.6 5.8E-07 1.2E-11 77.4 11.6 110 3-116 114-238 (253)
116 PF00977 His_biosynth: Histidi 98.6 5.9E-08 1.3E-12 82.6 5.1 89 33-125 29-117 (229)
117 PLN02617 imidazole glycerol ph 98.6 7.3E-07 1.6E-11 84.6 12.4 76 33-111 438-513 (538)
118 COG0106 HisA Phosphoribosylfor 98.5 3.1E-07 6.6E-12 78.1 8.0 89 33-125 31-119 (241)
119 COG0214 SNZ1 Pyridoxine biosyn 98.5 8.2E-07 1.8E-11 74.9 10.2 104 1-115 63-242 (296)
120 TIGR02129 hisA_euk phosphoribo 98.5 3.5E-07 7.6E-12 78.8 8.2 79 36-125 41-123 (253)
121 PLN02446 (5-phosphoribosyl)-5- 98.5 4.1E-07 8.8E-12 78.7 7.8 84 33-125 43-130 (262)
122 cd03319 L-Ala-DL-Glu_epimerase 98.5 2.3E-06 5E-11 75.9 12.3 98 3-110 160-258 (316)
123 PRK06843 inosine 5-monophospha 98.5 1.5E-06 3.3E-11 79.6 11.3 107 3-118 177-293 (404)
124 PRK13586 1-(5-phosphoribosyl)- 98.5 8E-07 1.7E-11 75.9 8.6 86 34-124 31-116 (232)
125 TIGR01303 IMP_DH_rel_1 IMP deh 98.4 1.2E-06 2.6E-11 82.0 10.1 106 3-116 249-363 (475)
126 cd04723 HisA_HisF Phosphoribos 98.4 9.5E-07 2.1E-11 75.4 8.6 87 33-125 35-121 (233)
127 PLN02617 imidazole glycerol ph 98.4 7.4E-07 1.6E-11 84.5 8.6 84 33-117 267-361 (538)
128 PF03060 NMO: Nitronate monoox 98.4 2.9E-06 6.4E-11 76.0 11.9 81 35-119 145-228 (330)
129 TIGR01919 hisA-trpF 1-(5-phosp 98.4 1.3E-06 2.8E-11 75.1 8.6 86 34-124 32-117 (243)
130 PRK07807 inosine 5-monophospha 98.4 3.1E-06 6.7E-11 79.4 11.3 108 5-120 253-369 (479)
131 PRK05567 inosine 5'-monophosph 98.4 3.6E-06 7.8E-11 79.2 11.6 104 5-116 254-366 (486)
132 PRK00278 trpC indole-3-glycero 98.4 7.3E-06 1.6E-10 71.1 12.6 105 3-121 145-251 (260)
133 cd02812 PcrB_like PcrB_like pr 98.4 2.3E-06 4.9E-11 72.4 9.1 84 31-123 133-217 (219)
134 PLN02274 inosine-5'-monophosph 98.4 4E-06 8.6E-11 79.2 11.6 104 6-117 275-387 (505)
135 KOG0538 Glycolate oxidase [Ene 98.3 7.5E-06 1.6E-10 71.6 11.6 128 3-154 207-336 (363)
136 TIGR01302 IMP_dehydrog inosine 98.3 8E-06 1.7E-10 76.2 12.7 110 4-122 249-368 (450)
137 KOG1436 Dihydroorotate dehydro 98.3 2.6E-06 5.6E-11 74.8 8.5 106 19-125 252-376 (398)
138 cd00945 Aldolase_Class_I Class 98.3 1.6E-05 3.4E-10 64.9 12.9 100 4-110 96-201 (201)
139 cd00564 TMP_TenI Thiamine mono 98.3 5.2E-06 1.1E-10 67.7 9.6 80 37-118 106-186 (196)
140 KOG1606 Stationary phase-induc 98.3 2.2E-06 4.7E-11 71.4 6.8 53 69-122 196-250 (296)
141 PRK04128 1-(5-phosphoribosyl)- 98.3 8E-06 1.7E-10 69.6 10.6 101 3-116 107-217 (228)
142 PTZ00314 inosine-5'-monophosph 98.3 8E-06 1.7E-10 77.0 11.0 104 5-117 267-380 (495)
143 TIGR01304 IMP_DH_rel_2 IMP deh 98.3 8.1E-06 1.7E-10 74.2 10.5 95 17-119 186-293 (369)
144 TIGR00262 trpA tryptophan synt 98.2 2.5E-05 5.4E-10 67.7 13.1 111 3-114 70-231 (256)
145 PRK07565 dihydroorotate dehydr 98.2 2.4E-05 5.3E-10 70.2 13.4 106 4-110 86-197 (334)
146 TIGR01305 GMP_reduct_1 guanosi 98.2 1.8E-05 3.9E-10 70.5 12.0 104 4-115 134-246 (343)
147 cd03315 MLE_like Muconate lact 98.2 2.6E-05 5.7E-10 67.5 12.7 97 3-109 111-209 (265)
148 PRK08649 inosine 5-monophospha 98.2 1E-05 2.2E-10 73.5 10.5 95 18-120 186-295 (368)
149 COG0352 ThiE Thiamine monophos 98.2 6.2E-06 1.3E-10 69.4 8.5 86 35-122 113-198 (211)
150 TIGR01769 GGGP geranylgeranylg 98.2 1.6E-05 3.4E-10 66.7 10.2 73 32-110 133-205 (205)
151 PRK00507 deoxyribose-phosphate 98.2 3.6E-05 7.9E-10 65.3 12.2 102 3-112 104-210 (221)
152 PRK00043 thiE thiamine-phospha 98.2 1.4E-05 3E-10 66.5 9.6 78 39-118 117-196 (212)
153 PRK07107 inosine 5-monophospha 98.2 2.2E-05 4.8E-10 74.1 11.9 106 5-117 268-388 (502)
154 TIGR00734 hisAF_rel hisA/hisF 98.2 8.1E-06 1.7E-10 69.2 8.0 86 33-124 36-122 (221)
155 PRK07226 fructose-bisphosphate 98.2 3.1E-05 6.8E-10 67.4 11.7 101 7-118 124-239 (267)
156 COG2070 Dioxygenases related t 98.1 1.3E-05 2.9E-10 72.0 9.5 83 35-118 136-221 (336)
157 cd00958 DhnA Class I fructose- 98.1 4.9E-05 1.1E-09 64.6 12.6 90 17-118 120-222 (235)
158 COG1304 idi Isopentenyl diphos 98.1 3.9E-06 8.5E-11 75.9 6.1 105 3-116 202-308 (360)
159 CHL00200 trpA tryptophan synth 98.1 4.4E-05 9.6E-10 66.4 12.0 110 3-115 75-236 (263)
160 TIGR01768 GGGP-family geranylg 98.1 2E-05 4.4E-10 66.7 9.5 83 34-122 136-220 (223)
161 COG3010 NanE Putative N-acetyl 98.1 4.2E-05 9E-10 63.6 10.9 79 36-119 137-217 (229)
162 TIGR01949 AroFGH_arch predicte 98.1 7E-05 1.5E-09 64.8 12.5 100 9-119 123-236 (258)
163 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.0001 2.2E-09 61.3 13.0 103 6-118 90-194 (206)
164 PRK07028 bifunctional hexulose 98.1 7.3E-05 1.6E-09 69.3 13.1 103 7-118 96-198 (430)
165 PRK08883 ribulose-phosphate 3- 98.1 4.2E-05 9E-10 64.9 10.5 104 9-118 47-203 (220)
166 PF00478 IMPDH: IMP dehydrogen 98.1 1.8E-05 3.9E-10 71.3 8.6 105 4-117 133-247 (352)
167 PRK02615 thiamine-phosphate py 98.0 3.5E-05 7.5E-10 69.5 10.0 79 38-118 252-330 (347)
168 PLN02591 tryptophan synthase 98.0 0.00015 3.2E-09 62.7 12.9 46 69-115 178-223 (250)
169 PRK05096 guanosine 5'-monophos 98.0 5.7E-05 1.2E-09 67.4 10.5 105 5-118 136-250 (346)
170 TIGR00693 thiE thiamine-phosph 98.0 5.5E-05 1.2E-09 62.4 9.7 77 40-118 110-188 (196)
171 PRK04169 geranylgeranylglycery 98.0 8.6E-05 1.9E-09 63.4 10.6 68 45-118 153-221 (232)
172 PRK06512 thiamine-phosphate py 98.0 5.7E-05 1.2E-09 64.1 9.5 77 39-118 124-200 (221)
173 PF02581 TMP-TENI: Thiamine mo 98.0 3.9E-05 8.5E-10 62.8 8.2 74 38-113 107-180 (180)
174 PRK13125 trpA tryptophan synth 98.0 0.00015 3.2E-09 62.4 12.1 104 9-115 64-219 (244)
175 CHL00162 thiG thiamin biosynth 97.9 5E-05 1.1E-09 65.1 8.7 75 37-115 149-223 (267)
176 cd03316 MR_like Mandelate race 97.9 8.8E-05 1.9E-09 66.8 10.9 96 4-109 172-269 (357)
177 cd04726 KGPDC_HPS 3-Keto-L-gul 97.9 0.0003 6.5E-09 58.1 12.8 103 5-118 90-194 (202)
178 cd00405 PRAI Phosphoribosylant 97.9 0.0001 2.2E-09 61.4 9.9 104 10-119 87-190 (203)
179 cd04724 Tryptophan_synthase_al 97.9 0.00026 5.6E-09 60.8 12.4 109 4-115 61-220 (242)
180 PF05690 ThiG: Thiazole biosyn 97.9 7.6E-05 1.7E-09 63.3 8.6 75 37-115 135-209 (247)
181 TIGR01163 rpe ribulose-phospha 97.9 0.0001 2.2E-09 61.2 9.4 105 7-119 44-202 (210)
182 cd04739 DHOD_like Dihydroorota 97.8 0.00053 1.2E-08 61.4 13.8 104 6-110 86-195 (325)
183 PRK03512 thiamine-phosphate py 97.8 0.00022 4.8E-09 60.0 10.2 79 39-119 115-195 (211)
184 KOG0134 NADH:flavin oxidoreduc 97.8 0.00013 2.8E-09 66.3 8.6 123 4-126 224-364 (400)
185 PRK06806 fructose-bisphosphate 97.7 0.00019 4.1E-09 63.0 9.1 79 37-117 157-237 (281)
186 PRK08999 hypothetical protein; 97.7 0.0002 4.3E-09 63.4 9.1 74 38-113 238-311 (312)
187 PLN02979 glycolate oxidase 97.7 0.00073 1.6E-08 61.2 12.1 90 19-110 120-251 (366)
188 PF00218 IGPS: Indole-3-glycer 97.7 0.00042 9E-09 60.0 9.9 106 3-122 143-250 (254)
189 PLN02535 glycolate oxidase 97.7 0.00086 1.9E-08 60.9 12.3 95 14-110 118-251 (364)
190 PRK11750 gltB glutamate syntha 97.6 0.00043 9.3E-09 71.8 11.3 111 3-118 979-1104(1485)
191 PLN02493 probable peroxisomal 97.6 0.00099 2.1E-08 60.5 11.9 90 19-110 121-252 (367)
192 PF03437 BtpA: BtpA family; I 97.6 0.00065 1.4E-08 58.8 10.0 78 35-121 160-238 (254)
193 cd04742 NPD_FabD 2-Nitropropan 97.6 0.00036 7.8E-09 64.4 8.8 79 36-119 166-257 (418)
194 TIGR00259 thylakoid_BtpA membr 97.6 0.00053 1.1E-08 59.4 9.3 77 34-120 158-236 (257)
195 TIGR01859 fruc_bis_ald_ fructo 97.6 0.0015 3.4E-08 57.3 12.4 73 40-114 160-234 (282)
196 PRK13111 trpA tryptophan synth 97.5 0.0026 5.6E-08 55.2 13.2 44 69-114 189-232 (258)
197 PTZ00170 D-ribulose-5-phosphat 97.5 0.0016 3.4E-08 55.5 11.6 104 9-118 54-209 (228)
198 cd03332 LMO_FMN L-Lactate 2-mo 97.5 0.0016 3.5E-08 59.5 12.0 89 20-110 138-281 (383)
199 PRK13802 bifunctional indole-3 97.5 0.0039 8.5E-08 61.1 15.2 104 4-121 146-251 (695)
200 PRK12290 thiE thiamine-phospha 97.5 0.00077 1.7E-08 62.3 9.8 78 39-118 313-400 (437)
201 cd00331 IGPS Indole-3-glycerol 97.5 0.00066 1.4E-08 57.0 8.7 77 32-115 30-106 (217)
202 PLN02334 ribulose-phosphate 3- 97.5 0.0007 1.5E-08 57.5 8.7 79 36-119 128-211 (229)
203 PF01791 DeoC: DeoC/LacD famil 97.5 0.0009 2E-08 57.0 9.4 103 6-114 109-234 (236)
204 cd00381 IMPDH IMPDH: The catal 97.5 0.0016 3.4E-08 58.4 11.2 94 4-110 69-163 (325)
205 cd04743 NPD_PKS 2-Nitropropane 97.4 0.00069 1.5E-08 60.5 8.7 113 3-119 38-211 (320)
206 cd00429 RPE Ribulose-5-phospha 97.4 0.002 4.3E-08 53.3 11.0 72 47-120 128-204 (211)
207 cd04727 pdxS PdxS is a subunit 97.4 0.0011 2.4E-08 57.8 9.7 82 9-107 55-136 (283)
208 TIGR00126 deoC deoxyribose-pho 97.4 0.0016 3.5E-08 54.8 10.3 102 3-111 100-205 (211)
209 cd02809 alpha_hydroxyacid_oxid 97.4 0.0032 7E-08 55.6 12.5 86 19-110 115-200 (299)
210 PRK07455 keto-hydroxyglutarate 97.4 0.0011 2.3E-08 54.8 8.8 67 39-115 118-185 (187)
211 PRK09140 2-dehydro-3-deoxy-6-p 97.4 0.001 2.3E-08 55.8 8.9 68 39-117 117-186 (206)
212 TIGR02814 pfaD_fam PfaD family 97.4 0.00083 1.8E-08 62.4 8.8 75 40-119 175-262 (444)
213 COG2022 ThiG Uncharacterized e 97.4 0.00075 1.6E-08 57.2 7.7 73 38-114 143-215 (262)
214 cd03321 mandelate_racemase Man 97.4 0.0035 7.5E-08 56.7 12.7 97 3-109 168-266 (355)
215 PRK04302 triosephosphate isome 97.4 0.00091 2E-08 56.6 8.5 79 40-119 128-211 (223)
216 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0027 5.9E-08 53.0 10.9 98 3-107 99-200 (203)
217 COG0274 DeoC Deoxyribose-phosp 97.4 0.0023 4.9E-08 54.1 10.3 103 2-111 106-213 (228)
218 PLN02898 HMP-P kinase/thiamin- 97.4 0.00099 2.1E-08 63.0 9.2 78 39-118 403-483 (502)
219 cd02922 FCB2_FMN Flavocytochro 97.4 0.0031 6.7E-08 57.0 11.9 89 20-110 118-241 (344)
220 PRK05437 isopentenyl pyrophosp 97.3 0.0033 7.2E-08 56.9 12.0 107 2-110 103-217 (352)
221 PF01884 PcrB: PcrB family; I 97.3 0.00027 5.8E-09 60.2 4.5 48 70-118 172-219 (230)
222 PLN02495 oxidoreductase, actin 97.3 0.0034 7.4E-08 57.5 11.7 104 11-114 104-218 (385)
223 cd04740 DHOD_1B_like Dihydroor 97.3 0.0055 1.2E-07 53.8 12.7 98 11-109 81-185 (296)
224 cd04737 LOX_like_FMN L-Lactate 97.3 0.0032 7E-08 57.0 11.3 88 20-109 125-248 (351)
225 COG0134 TrpC Indole-3-glycerol 97.3 0.0059 1.3E-07 52.7 12.3 104 4-121 142-247 (254)
226 KOG2334 tRNA-dihydrouridine sy 97.3 0.00013 2.8E-09 66.4 2.2 111 4-123 314-424 (477)
227 PRK11197 lldD L-lactate dehydr 97.3 0.004 8.6E-08 57.0 11.8 43 66-110 231-273 (381)
228 cd00452 KDPG_aldolase KDPG and 97.3 0.0014 3.1E-08 54.0 8.2 65 39-114 110-175 (190)
229 PF00478 IMPDH: IMP dehydrogen 97.3 0.0026 5.6E-08 57.5 10.4 98 4-112 72-179 (352)
230 PF04481 DUF561: Protein of un 97.3 0.0044 9.4E-08 52.1 10.8 108 4-113 102-217 (242)
231 PRK11840 bifunctional sulfur c 97.2 0.002 4.3E-08 57.4 9.2 48 67-115 236-283 (326)
232 PRK13957 indole-3-glycerol-pho 97.2 0.0065 1.4E-07 52.4 12.1 76 39-121 164-241 (247)
233 COG0269 SgbH 3-hexulose-6-phos 97.2 0.0095 2.1E-07 50.1 12.6 108 3-118 91-200 (217)
234 PRK09517 multifunctional thiam 97.2 0.0013 2.8E-08 65.2 8.8 72 46-119 128-203 (755)
235 PRK07259 dihydroorotate dehydr 97.2 0.0058 1.3E-07 53.9 12.1 93 16-109 88-188 (301)
236 KOG0623 Glutamine amidotransfe 97.2 0.00059 1.3E-08 60.8 5.5 72 34-108 442-513 (541)
237 PRK08005 epimerase; Validated 97.2 0.0047 1E-07 52.0 10.7 104 9-118 48-199 (210)
238 PLN02460 indole-3-glycerol-pho 97.2 0.0075 1.6E-07 54.1 12.5 106 4-123 216-330 (338)
239 PRK07315 fructose-bisphosphate 97.2 0.0024 5.2E-08 56.4 9.3 78 37-116 157-238 (293)
240 COG0069 GltB Glutamate synthas 97.2 0.0037 7.9E-08 58.5 10.8 110 3-118 286-411 (485)
241 TIGR02708 L_lactate_ox L-lacta 97.2 0.0058 1.2E-07 55.6 11.9 88 21-110 134-256 (367)
242 TIGR02151 IPP_isom_2 isopenten 97.2 0.0067 1.4E-07 54.5 12.0 107 2-110 96-210 (333)
243 cd03329 MR_like_4 Mandelate ra 97.2 0.0055 1.2E-07 55.6 11.6 96 4-109 172-270 (368)
244 PRK08745 ribulose-phosphate 3- 97.1 0.0072 1.6E-07 51.4 11.3 104 9-118 51-207 (223)
245 cd02810 DHOD_DHPD_FMN Dihydroo 97.1 0.01 2.2E-07 51.9 12.6 103 7-110 85-196 (289)
246 PRK06801 hypothetical protein; 97.1 0.0035 7.6E-08 55.2 9.6 75 39-115 162-238 (286)
247 TIGR00078 nadC nicotinate-nucl 97.1 0.0088 1.9E-07 52.1 11.7 81 10-111 167-251 (265)
248 PF01680 SOR_SNZ: SOR/SNZ fami 97.1 0.0027 5.8E-08 51.8 7.7 84 1-106 57-141 (208)
249 COG0036 Rpe Pentose-5-phosphat 97.1 0.0062 1.3E-07 51.4 10.2 104 9-118 51-205 (220)
250 TIGR01361 DAHP_synth_Bsub phos 97.1 0.016 3.4E-07 50.4 12.8 100 10-111 124-230 (260)
251 PRK08072 nicotinate-nucleotide 97.0 0.01 2.3E-07 52.0 11.6 68 37-118 199-268 (277)
252 PRK05283 deoxyribose-phosphate 97.0 0.007 1.5E-07 52.4 10.2 103 3-119 113-226 (257)
253 PF00290 Trp_syntA: Tryptophan 97.0 0.015 3.2E-07 50.5 12.3 45 69-115 187-231 (259)
254 cd04736 MDH_FMN Mandelate dehy 97.0 0.011 2.3E-07 53.8 11.8 42 67-110 223-264 (361)
255 PRK13397 3-deoxy-7-phosphohept 97.0 0.02 4.3E-07 49.5 12.7 100 9-110 113-219 (250)
256 cd01568 QPRTase_NadC Quinolina 97.0 0.013 2.7E-07 51.3 11.5 89 9-118 169-263 (269)
257 PRK13398 3-deoxy-7-phosphohept 96.9 0.016 3.5E-07 50.5 12.0 99 10-111 126-232 (266)
258 cd01572 QPRTase Quinolinate ph 96.9 0.014 3E-07 50.9 11.5 64 37-114 193-258 (268)
259 PRK13307 bifunctional formalde 96.9 0.016 3.5E-07 53.2 12.3 101 5-118 263-366 (391)
260 COG0159 TrpA Tryptophan syntha 96.9 0.032 6.9E-07 48.5 13.3 111 3-115 77-238 (265)
261 TIGR01305 GMP_reduct_1 guanosi 96.9 0.016 3.4E-07 52.0 11.5 98 3-110 79-178 (343)
262 PRK07428 nicotinate-nucleotide 96.9 0.015 3.3E-07 51.2 11.3 94 8-119 183-280 (288)
263 cd02811 IDI-2_FMN Isopentenyl- 96.9 0.018 4E-07 51.6 11.9 107 2-110 95-209 (326)
264 COG2876 AroA 3-deoxy-D-arabino 96.9 0.016 3.5E-07 50.1 10.9 98 17-119 150-256 (286)
265 PRK09427 bifunctional indole-3 96.9 0.019 4.1E-07 53.8 12.3 105 4-123 145-251 (454)
266 PRK06552 keto-hydroxyglutarate 96.9 0.008 1.7E-07 50.7 8.9 64 40-114 123-187 (213)
267 PRK05848 nicotinate-nucleotide 96.8 0.019 4E-07 50.3 11.3 92 7-119 168-266 (273)
268 COG0434 SgcQ Predicted TIM-bar 96.8 0.0064 1.4E-07 51.8 7.9 71 34-113 164-235 (263)
269 PRK13957 indole-3-glycerol-pho 96.8 0.0099 2.1E-07 51.2 9.3 76 33-115 61-136 (247)
270 PRK06843 inosine 5-monophospha 96.8 0.022 4.7E-07 52.5 12.0 70 33-110 152-222 (404)
271 PRK12595 bifunctional 3-deoxy- 96.8 0.031 6.7E-07 50.8 12.9 107 9-120 216-330 (360)
272 cd00377 ICL_PEPM Members of th 96.8 0.037 7.9E-07 47.6 12.6 108 3-110 53-180 (243)
273 cd03328 MR_like_3 Mandelate ra 96.8 0.016 3.6E-07 52.3 11.0 97 3-109 164-264 (352)
274 PF01070 FMN_dh: FMN-dependent 96.8 0.0079 1.7E-07 54.6 8.8 90 19-110 109-253 (356)
275 PRK05742 nicotinate-nucleotide 96.8 0.025 5.3E-07 49.7 11.5 70 36-119 199-270 (277)
276 PRK08673 3-deoxy-7-phosphohept 96.7 0.035 7.5E-07 50.0 12.6 94 17-111 198-298 (335)
277 COG5016 Pyruvate/oxaloacetate 96.7 0.076 1.6E-06 48.7 14.5 102 1-107 121-228 (472)
278 TIGR01306 GMP_reduct_2 guanosi 96.7 0.027 6E-07 50.3 11.5 97 3-110 67-165 (321)
279 PRK05581 ribulose-phosphate 3- 96.7 0.024 5.3E-07 47.3 10.7 37 82-120 172-208 (220)
280 TIGR02317 prpB methylisocitrat 96.7 0.05 1.1E-06 47.9 12.9 107 3-109 57-180 (285)
281 cd03325 D-galactonate_dehydrat 96.7 0.024 5.2E-07 51.2 11.2 96 4-109 159-256 (352)
282 PRK11320 prpB 2-methylisocitra 96.6 0.055 1.2E-06 47.8 13.0 118 3-122 62-196 (292)
283 PTZ00314 inosine-5'-monophosph 96.6 0.016 3.5E-07 54.8 10.3 70 33-110 240-310 (495)
284 TIGR02534 mucon_cyclo muconate 96.6 0.038 8.2E-07 50.2 12.2 97 3-109 169-267 (368)
285 PF00834 Ribul_P_3_epim: Ribul 96.6 0.0072 1.6E-07 50.6 6.9 103 8-116 46-200 (201)
286 cd03326 MR_like_1 Mandelate ra 96.6 0.042 9.1E-07 50.4 12.4 97 3-109 187-289 (385)
287 PRK05458 guanosine 5'-monophos 96.6 0.016 3.6E-07 51.9 9.4 96 3-110 70-168 (326)
288 PRK14017 galactonate dehydrata 96.6 0.03 6.5E-07 51.1 11.4 96 4-109 160-257 (382)
289 COG1646 Predicted phosphate-bi 96.6 0.0036 7.8E-08 53.1 4.9 56 64-122 177-232 (240)
290 PRK13396 3-deoxy-7-phosphohept 96.6 0.038 8.3E-07 50.0 11.7 99 10-110 200-306 (352)
291 TIGR02320 PEP_mutase phosphoen 96.6 0.051 1.1E-06 47.9 12.2 107 4-110 63-189 (285)
292 PF04309 G3P_antiterm: Glycero 96.5 0.003 6.4E-08 51.7 4.1 71 33-115 104-174 (175)
293 cd03327 MR_like_2 Mandelate ra 96.5 0.034 7.3E-07 50.0 11.0 96 4-109 154-251 (341)
294 PF01081 Aldolase: KDPG and KH 96.5 0.034 7.3E-07 46.4 10.1 89 21-123 9-97 (196)
295 PRK09722 allulose-6-phosphate 96.5 0.032 6.8E-07 47.7 10.0 100 9-114 49-201 (229)
296 COG1411 Uncharacterized protei 96.4 0.021 4.6E-07 47.4 8.5 83 30-116 134-216 (229)
297 PRK06852 aldolase; Validated 96.4 0.064 1.4E-06 47.6 12.1 95 17-117 165-272 (304)
298 cd03324 rTSbeta_L-fuconate_deh 96.4 0.057 1.2E-06 50.0 12.3 97 3-109 222-323 (415)
299 KOG2550 IMP dehydrogenase/GMP 96.4 0.0075 1.6E-07 55.1 5.8 74 36-112 303-385 (503)
300 PRK15072 bifunctional D-altron 96.3 0.053 1.2E-06 49.9 11.6 94 6-109 191-286 (404)
301 cd03318 MLE Muconate Lactonizi 96.3 0.08 1.7E-06 47.9 12.5 96 4-109 171-268 (365)
302 cd01573 modD_like ModD; Quinol 96.3 0.032 6.9E-07 48.8 9.4 63 39-112 196-260 (272)
303 cd03323 D-glucarate_dehydratas 96.3 0.05 1.1E-06 50.0 11.2 93 3-108 196-289 (395)
304 cd00377 ICL_PEPM Members of th 96.3 0.053 1.2E-06 46.6 10.6 97 3-114 122-230 (243)
305 PRK08318 dihydropyrimidine deh 96.3 0.092 2E-06 48.6 12.8 101 9-109 88-199 (420)
306 cd03322 rpsA The starvation se 96.3 0.07 1.5E-06 48.4 11.7 92 8-109 150-243 (361)
307 TIGR01182 eda Entner-Doudoroff 96.2 0.064 1.4E-06 45.0 10.4 90 21-124 9-98 (204)
308 cd02940 DHPD_FMN Dihydropyrimi 96.2 0.13 2.7E-06 45.5 12.8 100 11-110 90-200 (299)
309 PRK06015 keto-hydroxyglutarate 96.2 0.07 1.5E-06 44.7 10.3 89 21-123 5-93 (201)
310 PRK05718 keto-hydroxyglutarate 96.1 0.086 1.9E-06 44.5 10.9 97 9-122 7-103 (212)
311 PRK02901 O-succinylbenzoate sy 96.1 0.11 2.5E-06 46.5 12.2 95 3-109 116-213 (327)
312 PRK13813 orotidine 5'-phosphat 96.1 0.031 6.6E-07 46.8 8.0 107 9-118 45-200 (215)
313 TIGR01302 IMP_dehydrog inosine 96.1 0.03 6.5E-07 52.4 8.6 70 33-110 223-293 (450)
314 PLN02274 inosine-5'-monophosph 96.1 0.027 5.8E-07 53.5 8.3 70 33-110 247-317 (505)
315 PRK02714 O-succinylbenzoate sy 96.1 0.15 3.3E-06 45.4 12.7 96 4-109 146-246 (320)
316 PF04131 NanE: Putative N-acet 96.0 0.042 9.2E-07 45.4 8.3 92 9-109 22-118 (192)
317 cd00308 enolase_like Enolase-s 96.0 0.13 2.9E-06 43.3 11.7 92 8-109 81-174 (229)
318 PRK15440 L-rhamnonate dehydrat 96.0 0.087 1.9E-06 48.5 11.3 96 4-109 191-290 (394)
319 PRK07998 gatY putative fructos 96.0 0.12 2.6E-06 45.5 11.6 108 4-114 114-233 (283)
320 PRK09140 2-dehydro-3-deoxy-6-p 96.0 0.079 1.7E-06 44.4 10.1 87 21-121 11-98 (206)
321 PRK08185 hypothetical protein; 96.0 0.051 1.1E-06 47.8 9.2 74 36-113 152-231 (283)
322 TIGR01303 IMP_DH_rel_1 IMP deh 96.0 0.022 4.8E-07 53.7 7.3 69 34-110 225-294 (475)
323 TIGR01037 pyrD_sub1_fam dihydr 96.0 0.13 2.9E-06 45.2 11.9 102 8-110 79-189 (300)
324 PRK08227 autoinducer 2 aldolas 96.0 0.16 3.5E-06 44.2 12.0 47 70-116 182-232 (264)
325 TIGR01927 menC_gamma/gm+ o-suc 96.0 0.12 2.6E-06 45.8 11.6 95 3-109 136-235 (307)
326 TIGR02319 CPEP_Pphonmut carbox 96.0 0.23 5.1E-06 43.9 13.1 119 4-124 62-197 (294)
327 cd00452 KDPG_aldolase KDPG and 96.0 0.089 1.9E-06 43.3 10.0 88 21-122 5-92 (190)
328 PRK07709 fructose-bisphosphate 95.9 0.18 3.9E-06 44.4 12.1 108 4-113 117-236 (285)
329 COG4981 Enoyl reductase domain 95.9 0.037 8E-07 52.4 8.1 109 9-118 112-261 (717)
330 PRK05096 guanosine 5'-monophos 95.9 0.11 2.4E-06 46.6 10.8 98 3-111 80-180 (346)
331 TIGR03247 glucar-dehydr glucar 95.8 0.13 2.9E-06 48.0 11.7 93 5-108 210-307 (441)
332 PRK12858 tagatose 1,6-diphosph 95.8 0.14 3.1E-06 46.2 11.5 85 33-118 184-284 (340)
333 PRK07807 inosine 5-monophospha 95.8 0.046 9.9E-07 51.6 8.5 70 34-111 227-297 (479)
334 COG1954 GlpP Glycerol-3-phosph 95.8 0.087 1.9E-06 42.8 8.8 66 33-110 108-173 (181)
335 PRK07455 keto-hydroxyglutarate 95.8 0.1 2.2E-06 43.1 9.6 89 9-111 4-92 (187)
336 TIGR02321 Pphn_pyruv_hyd phosp 95.8 0.23 5E-06 43.9 12.3 121 3-124 59-199 (290)
337 PRK05567 inosine 5'-monophosph 95.7 0.037 8.1E-07 52.2 7.6 69 34-110 228-297 (486)
338 PRK00230 orotidine 5'-phosphat 95.7 0.099 2.2E-06 44.5 9.5 45 9-55 44-89 (230)
339 PRK09195 gatY tagatose-bisphos 95.7 0.082 1.8E-06 46.6 9.1 77 37-114 159-236 (284)
340 cd03320 OSBS o-Succinylbenzoat 95.6 0.13 2.8E-06 44.4 10.2 95 3-109 109-205 (263)
341 COG4948 L-alanine-DL-glutamate 95.6 0.13 2.9E-06 46.6 10.6 94 6-109 173-268 (372)
342 PRK00278 trpC indole-3-glycero 95.6 0.066 1.4E-06 46.5 8.1 90 19-115 49-145 (260)
343 TIGR01858 tag_bisphos_ald clas 95.6 0.08 1.7E-06 46.6 8.7 76 37-113 157-233 (282)
344 PRK07107 inosine 5-monophospha 95.6 0.058 1.3E-06 51.2 8.3 72 33-111 241-313 (502)
345 PRK07114 keto-hydroxyglutarate 95.5 0.26 5.6E-06 41.9 11.1 99 9-124 7-109 (222)
346 PRK14040 oxaloacetate decarbox 95.5 1 2.2E-05 43.7 16.5 206 2-218 121-342 (593)
347 COG0159 TrpA Tryptophan syntha 95.4 0.37 8E-06 42.0 12.0 103 7-109 4-128 (265)
348 cd06556 ICL_KPHMT Members of t 95.4 0.15 3.3E-06 43.8 9.5 78 7-109 114-208 (240)
349 PRK12738 kbaY tagatose-bisphos 95.4 0.12 2.7E-06 45.5 9.1 78 35-113 157-235 (286)
350 COG0800 Eda 2-keto-3-deoxy-6-p 95.4 0.27 5.9E-06 41.3 10.7 86 10-109 6-91 (211)
351 cd00408 DHDPS-like Dihydrodipi 95.3 0.19 4E-06 43.7 10.2 99 5-107 50-156 (281)
352 cd04729 NanE N-acetylmannosami 95.3 0.29 6.2E-06 41.1 10.8 95 9-109 50-149 (219)
353 TIGR03151 enACPred_II putative 95.2 0.26 5.7E-06 43.8 11.0 90 3-109 46-135 (307)
354 PF09370 TIM-br_sig_trns: TIM- 95.2 0.094 2E-06 45.5 7.8 76 37-112 161-248 (268)
355 PRK06552 keto-hydroxyglutarate 95.2 0.26 5.6E-06 41.6 10.3 96 10-122 6-104 (213)
356 PRK05835 fructose-bisphosphate 95.2 0.15 3.2E-06 45.4 9.1 68 36-103 158-227 (307)
357 PRK12737 gatY tagatose-bisphos 95.2 0.14 3.1E-06 45.0 9.0 77 36-113 158-235 (284)
358 TIGR02320 PEP_mutase phosphoen 95.2 0.39 8.5E-06 42.3 11.7 98 3-114 133-244 (285)
359 PF13714 PEP_mutase: Phosphoen 95.1 0.54 1.2E-05 40.3 12.2 52 4-55 54-107 (238)
360 PF01729 QRPTase_C: Quinolinat 95.1 0.15 3.2E-06 41.5 8.3 96 7-119 66-164 (169)
361 KOG0538 Glycolate oxidase [Ene 95.1 0.28 6E-06 43.6 10.2 79 30-110 131-251 (363)
362 COG0329 DapA Dihydrodipicolina 95.1 0.16 3.4E-06 45.1 9.0 88 30-118 22-114 (299)
363 TIGR02313 HpaI-NOT-DapA 2,4-di 95.1 0.15 3.3E-06 44.9 8.9 87 31-118 19-110 (294)
364 PRK08385 nicotinate-nucleotide 95.0 0.22 4.7E-06 43.8 9.6 93 9-118 171-267 (278)
365 cd00947 TBP_aldolase_IIB Tagat 95.0 0.5 1.1E-05 41.5 11.9 108 4-113 109-229 (276)
366 PRK13306 ulaD 3-keto-L-gulonat 95.0 0.26 5.6E-06 41.6 9.8 36 81-118 164-199 (216)
367 PRK08610 fructose-bisphosphate 95.0 0.18 3.9E-06 44.5 9.0 76 36-112 159-235 (286)
368 TIGR01362 KDO8P_synth 3-deoxy- 95.0 0.52 1.1E-05 40.8 11.5 97 9-110 107-221 (258)
369 cd03317 NAAAR N-acylamino acid 95.0 0.46 1E-05 42.7 11.9 92 7-109 165-257 (354)
370 PRK12330 oxaloacetate decarbox 94.8 2.4 5.2E-05 40.3 16.5 103 2-109 121-231 (499)
371 cd04730 NPD_like 2-Nitropropan 94.8 0.75 1.6E-05 38.7 12.1 92 3-109 37-128 (236)
372 PRK07084 fructose-bisphosphate 94.8 0.61 1.3E-05 41.8 11.8 101 4-105 125-242 (321)
373 PRK03620 5-dehydro-4-deoxygluc 94.7 0.22 4.7E-06 44.1 9.0 85 31-117 26-115 (303)
374 PRK12581 oxaloacetate decarbox 94.7 1.8 3.8E-05 40.9 15.4 206 2-218 129-353 (468)
375 PLN02417 dihydrodipicolinate s 94.7 0.22 4.8E-06 43.6 9.0 86 31-117 20-110 (280)
376 PRK02227 hypothetical protein; 94.7 1.4 3E-05 37.8 13.4 130 3-158 38-180 (238)
377 PRK09282 pyruvate carboxylase 94.7 1.1 2.4E-05 43.5 14.4 201 3-218 121-341 (592)
378 cd00945 Aldolase_Class_I Class 94.7 0.47 1E-05 38.2 10.4 93 19-112 48-151 (201)
379 cd00951 KDGDH 5-dehydro-4-deox 94.7 0.23 4.9E-06 43.7 9.0 85 31-117 19-108 (289)
380 PRK12999 pyruvate carboxylase; 94.7 1.3 2.8E-05 46.3 15.6 207 2-218 651-878 (1146)
381 COG0135 TrpF Phosphoribosylant 94.6 0.31 6.8E-06 41.0 9.2 102 10-117 89-190 (208)
382 PRK06559 nicotinate-nucleotide 94.6 0.21 4.5E-06 44.2 8.4 69 36-118 207-277 (290)
383 cd04724 Tryptophan_synthase_al 94.6 0.27 5.9E-06 42.1 8.9 83 28-110 8-111 (242)
384 cd00408 DHDPS-like Dihydrodipi 94.5 0.27 5.9E-06 42.7 9.1 86 31-117 16-106 (281)
385 TIGR01334 modD putative molybd 94.5 0.24 5.3E-06 43.5 8.5 95 6-117 174-270 (277)
386 PRK12457 2-dehydro-3-deoxyphos 94.5 0.96 2.1E-05 39.6 12.0 98 9-110 121-237 (281)
387 PRK14042 pyruvate carboxylase 94.5 3.1 6.8E-05 40.4 16.8 206 2-218 120-341 (596)
388 PF01116 F_bP_aldolase: Fructo 94.4 0.3 6.6E-06 43.1 9.1 108 5-114 114-239 (287)
389 PRK12331 oxaloacetate decarbox 94.4 1.2 2.6E-05 41.7 13.6 100 3-109 121-228 (448)
390 PRK04147 N-acetylneuraminate l 94.4 0.29 6.4E-06 43.0 9.1 87 31-118 22-114 (293)
391 PRK12857 fructose-1,6-bisphosp 94.4 0.29 6.4E-06 43.1 9.0 76 37-113 159-235 (284)
392 PRK13111 trpA tryptophan synth 94.4 0.22 4.8E-06 43.2 8.1 88 22-109 14-123 (258)
393 COG2513 PrpB PEP phosphonomuta 94.4 0.7 1.5E-05 40.7 11.0 120 4-125 63-199 (289)
394 TIGR01235 pyruv_carbox pyruvat 94.4 1.6 3.4E-05 45.7 15.3 210 2-218 649-876 (1143)
395 PLN03033 2-dehydro-3-deoxyphos 94.3 0.75 1.6E-05 40.4 11.1 73 9-85 121-194 (290)
396 PRK01222 N-(5'-phosphoribosyl) 94.3 0.53 1.2E-05 39.5 10.0 99 11-118 92-191 (210)
397 TIGR01928 menC_lowGC/arch o-su 94.3 0.69 1.5E-05 41.2 11.3 90 9-109 162-252 (324)
398 KOG4201 Anthranilate synthase 94.3 0.2 4.4E-06 42.3 7.2 72 40-117 200-273 (289)
399 PRK01130 N-acetylmannosamine-6 94.3 0.66 1.4E-05 38.9 10.5 96 9-110 46-146 (221)
400 TIGR01182 eda Entner-Doudoroff 94.2 0.23 5.1E-06 41.6 7.6 48 69-118 136-184 (204)
401 TIGR00167 cbbA ketose-bisphosp 94.2 0.31 6.8E-06 43.0 8.7 76 37-113 162-239 (288)
402 COG0329 DapA Dihydrodipicolina 94.2 0.71 1.5E-05 40.9 10.9 93 4-100 56-156 (299)
403 cd00952 CHBPH_aldolase Trans-o 94.2 0.32 7E-06 43.2 8.8 86 31-117 27-117 (309)
404 PRK08091 ribulose-phosphate 3- 94.1 0.85 1.8E-05 38.9 10.9 101 7-118 105-215 (228)
405 cd04722 TIM_phosphate_binding 94.1 0.26 5.7E-06 39.2 7.6 80 33-114 12-95 (200)
406 PF00218 IGPS: Indole-3-glycer 94.1 0.31 6.7E-06 42.3 8.3 77 33-116 68-144 (254)
407 TIGR02319 CPEP_Pphonmut carbox 94.1 0.89 1.9E-05 40.3 11.3 99 4-114 131-237 (294)
408 PF04476 DUF556: Protein of un 94.1 2.4 5.2E-05 36.2 13.4 159 4-189 39-214 (235)
409 cd06556 ICL_KPHMT Members of t 94.1 0.72 1.6E-05 39.6 10.5 106 4-123 57-186 (240)
410 TIGR00737 nifR3_yhdG putative 94.1 0.74 1.6E-05 41.0 11.0 90 19-109 62-166 (319)
411 cd00950 DHDPS Dihydrodipicolin 94.1 0.37 8E-06 42.0 8.9 86 31-117 19-109 (284)
412 PRK05198 2-dehydro-3-deoxyphos 94.0 1.1 2.3E-05 39.0 11.3 97 9-110 115-229 (264)
413 cd04743 NPD_PKS 2-Nitropropane 94.0 0.75 1.6E-05 41.2 10.7 34 72-109 96-129 (320)
414 PRK11320 prpB 2-methylisocitra 94.0 0.98 2.1E-05 40.0 11.3 96 4-114 132-238 (292)
415 PRK05105 O-succinylbenzoate sy 93.9 1 2.2E-05 40.2 11.6 93 3-109 140-236 (322)
416 PLN02591 tryptophan synthase 93.9 0.42 9E-06 41.3 8.7 84 27-110 9-113 (250)
417 TIGR02317 prpB methylisocitrat 93.9 0.94 2E-05 39.9 11.1 99 4-114 127-233 (285)
418 TIGR00683 nanA N-acetylneurami 93.9 0.46 1E-05 41.8 9.2 86 31-118 19-111 (290)
419 cd00954 NAL N-Acetylneuraminic 93.9 0.47 1E-05 41.6 9.2 86 31-117 19-110 (288)
420 PRK06106 nicotinate-nucleotide 93.8 0.96 2.1E-05 39.8 10.9 85 9-114 182-270 (281)
421 PRK06543 nicotinate-nucleotide 93.8 0.38 8.3E-06 42.3 8.3 94 7-119 179-274 (281)
422 CHL00200 trpA tryptophan synth 93.8 0.58 1.3E-05 40.8 9.4 88 22-109 17-125 (263)
423 PRK09016 quinolinate phosphori 93.7 0.43 9.2E-06 42.3 8.5 89 9-118 197-288 (296)
424 PRK07896 nicotinate-nucleotide 93.7 0.55 1.2E-05 41.5 9.2 93 9-118 188-282 (289)
425 cd02801 DUS_like_FMN Dihydrour 93.6 0.82 1.8E-05 38.2 10.0 90 19-109 54-157 (231)
426 PRK06978 nicotinate-nucleotide 93.6 0.47 1E-05 42.0 8.6 72 36-119 215-286 (294)
427 PF00290 Trp_syntA: Tryptophan 93.5 0.47 1E-05 41.3 8.4 102 13-121 3-126 (259)
428 TIGR03217 4OH_2_O_val_ald 4-hy 93.5 0.84 1.8E-05 41.1 10.3 80 31-111 22-108 (333)
429 PRK14041 oxaloacetate decarbox 93.5 4.1 8.8E-05 38.5 15.2 204 3-218 120-340 (467)
430 PRK00311 panB 3-methyl-2-oxobu 93.5 0.54 1.2E-05 41.0 8.7 70 5-87 117-203 (264)
431 PRK09250 fructose-bisphosphate 93.5 1.1 2.3E-05 40.7 10.7 82 35-117 219-325 (348)
432 PLN02716 nicotinate-nucleotide 93.4 1.5 3.2E-05 39.1 11.5 67 45-118 228-298 (308)
433 PRK14567 triosephosphate isome 93.4 0.12 2.7E-06 44.7 4.6 42 80-123 202-243 (253)
434 KOG3111 D-ribulose-5-phosphate 93.4 0.65 1.4E-05 38.6 8.5 104 9-118 52-205 (224)
435 PF00793 DAHP_synth_1: DAHP sy 93.4 0.59 1.3E-05 40.9 8.8 95 16-111 128-235 (270)
436 PF00701 DHDPS: Dihydrodipicol 93.3 0.4 8.7E-06 41.9 7.9 87 31-118 20-111 (289)
437 TIGR00262 trpA tryptophan synt 93.3 0.6 1.3E-05 40.4 8.7 88 22-110 12-122 (256)
438 PF02310 B12-binding: B12 bind 93.3 0.4 8.6E-06 35.8 6.8 71 36-112 41-113 (121)
439 COG0157 NadC Nicotinate-nucleo 93.3 0.27 5.9E-06 43.0 6.4 91 10-119 177-271 (280)
440 TIGR00674 dapA dihydrodipicoli 93.3 0.64 1.4E-05 40.6 9.0 86 31-117 17-107 (285)
441 TIGR03569 NeuB_NnaB N-acetylne 93.3 2.4 5.2E-05 38.2 12.7 90 11-105 126-218 (329)
442 PRK03620 5-dehydro-4-deoxygluc 93.2 1.3 2.9E-05 39.1 10.9 88 7-99 62-154 (303)
443 PRK14565 triosephosphate isome 93.1 0.16 3.5E-06 43.5 4.8 56 66-123 170-230 (237)
444 PF03932 CutC: CutC family; I 93.0 0.74 1.6E-05 38.5 8.6 96 3-109 101-198 (201)
445 KOG0623 Glutamine amidotransfe 93.0 0.23 5E-06 44.7 5.7 82 34-116 270-362 (541)
446 PF01081 Aldolase: KDPG and KH 93.0 0.39 8.6E-06 40.0 6.9 69 40-118 115-184 (196)
447 cd00311 TIM Triosephosphate is 92.9 0.11 2.4E-06 44.7 3.5 41 80-122 199-239 (242)
448 TIGR01521 FruBisAldo_II_B fruc 92.9 0.67 1.5E-05 41.9 8.6 65 36-100 174-244 (347)
449 cd00953 KDG_aldolase KDG (2-ke 92.8 0.77 1.7E-05 40.1 8.8 85 30-116 17-104 (279)
450 PRK13397 3-deoxy-7-phosphohept 92.8 0.53 1.1E-05 40.7 7.6 88 31-124 27-119 (250)
451 cd00950 DHDPS Dihydrodipicolin 92.8 1.2 2.6E-05 38.7 10.0 98 6-107 54-159 (284)
452 PRK02506 dihydroorotate dehydr 92.8 2.4 5.2E-05 37.7 12.0 102 6-109 78-190 (310)
453 PRK05286 dihydroorotate dehydr 92.7 1.8 3.9E-05 39.0 11.3 104 9-113 126-248 (344)
454 COG0167 PyrD Dihydroorotate de 92.7 1.5 3.3E-05 39.1 10.5 94 24-117 100-200 (310)
455 TIGR03249 KdgD 5-dehydro-4-deo 92.7 1.6 3.5E-05 38.3 10.8 96 8-108 61-162 (296)
456 TIGR03586 PseI pseudaminic aci 92.7 3.1 6.8E-05 37.4 12.6 73 11-87 127-200 (327)
457 PRK03170 dihydrodipicolinate s 92.6 0.93 2E-05 39.7 9.1 96 8-107 57-160 (292)
458 TIGR03249 KdgD 5-dehydro-4-deo 92.6 0.87 1.9E-05 40.1 8.9 85 31-117 24-113 (296)
459 cd04726 KGPDC_HPS 3-Keto-L-gul 92.6 2.2 4.7E-05 34.9 10.8 91 8-110 41-133 (202)
460 COG0134 TrpC Indole-3-glycerol 92.5 0.56 1.2E-05 40.6 7.3 102 9-117 34-143 (254)
461 TIGR00674 dapA dihydrodipicoli 92.4 1.5 3.3E-05 38.3 10.2 90 8-101 54-151 (285)
462 PRK03170 dihydrodipicolinate s 92.4 0.93 2E-05 39.7 8.8 85 31-117 20-110 (292)
463 TIGR01520 FruBisAldo_II_A fruc 92.4 1 2.2E-05 40.9 9.0 80 33-113 198-290 (357)
464 TIGR01163 rpe ribulose-phospha 92.3 1.8 3.8E-05 35.6 10.0 75 31-109 9-85 (210)
465 PRK06096 molybdenum transport 92.3 2.1 4.5E-05 37.8 10.8 85 7-112 176-266 (284)
466 PRK13307 bifunctional formalde 92.3 2.1 4.4E-05 39.5 11.1 92 9-112 215-308 (391)
467 PRK14057 epimerase; Provisiona 92.3 1.8 3.9E-05 37.5 10.2 48 69-118 177-229 (254)
468 TIGR01740 pyrF orotidine 5'-ph 92.2 0.96 2.1E-05 37.9 8.4 46 9-55 40-85 (213)
469 PRK13399 fructose-1,6-bisphosp 92.2 0.77 1.7E-05 41.6 8.1 64 36-99 176-245 (347)
470 TIGR01108 oadA oxaloacetate de 92.1 8.5 0.00018 37.4 15.6 205 3-218 116-336 (582)
471 COG0502 BioB Biotin synthase a 92.1 0.67 1.5E-05 41.7 7.6 103 32-150 86-188 (335)
472 cd00952 CHBPH_aldolase Trans-o 92.1 2.3 5E-05 37.7 11.0 92 5-100 61-161 (309)
473 TIGR00222 panB 3-methyl-2-oxob 92.0 1.3 2.8E-05 38.6 9.1 68 7-87 118-202 (263)
474 TIGR00736 nifR3_rel_arch TIM-b 92.0 3.4 7.3E-05 35.3 11.4 99 6-109 56-167 (231)
475 PF01680 SOR_SNZ: SOR/SNZ fami 91.9 0.54 1.2E-05 38.6 6.1 75 36-111 24-101 (208)
476 COG0284 PyrF Orotidine-5'-phos 91.9 3.3 7.2E-05 35.6 11.4 45 10-56 54-99 (240)
477 PRK07114 keto-hydroxyglutarate 91.9 2 4.3E-05 36.5 9.8 67 42-118 128-196 (222)
478 TIGR01502 B_methylAsp_ase meth 91.7 4.3 9.3E-05 37.7 12.7 87 19-109 228-326 (408)
479 KOG1799 Dihydropyrimidine dehy 91.7 0.11 2.4E-06 46.8 2.1 112 2-116 256-391 (471)
480 cd00951 KDGDH 5-dehydro-4-deox 91.7 2.9 6.4E-05 36.6 11.2 95 8-107 56-156 (289)
481 TIGR01036 pyrD_sub2 dihydrooro 91.7 1.9 4.1E-05 38.8 10.1 79 35-113 153-247 (335)
482 cd04741 DHOD_1A_like Dihydroor 91.7 3.4 7.5E-05 36.4 11.6 103 6-110 75-193 (294)
483 cd00954 NAL N-Acetylneuraminic 91.7 1.8 3.8E-05 37.9 9.7 89 8-100 57-154 (288)
484 COG1830 FbaB DhnA-type fructos 91.6 1.1 2.4E-05 39.0 8.0 71 35-116 168-243 (265)
485 PRK04147 N-acetylneuraminate l 91.6 2.6 5.7E-05 37.0 10.8 96 8-107 60-163 (293)
486 KOG2550 IMP dehydrogenase/GMP 91.5 2.3 5E-05 39.3 10.3 70 35-111 252-321 (503)
487 PRK11572 copper homeostasis pr 91.5 1.5 3.2E-05 38.0 8.7 73 34-110 9-93 (248)
488 TIGR03128 RuMP_HxlA 3-hexulose 91.4 3.8 8.2E-05 33.7 11.0 91 8-110 40-133 (206)
489 PRK09197 fructose-bisphosphate 91.3 1.4 3E-05 40.0 8.6 73 40-113 195-282 (350)
490 PLN02424 ketopantoate hydroxym 91.3 3.3 7.1E-05 37.3 11.0 96 4-109 80-201 (332)
491 PF04481 DUF561: Protein of un 91.3 1.8 3.9E-05 36.7 8.7 66 30-111 24-89 (242)
492 PLN02460 indole-3-glycerol-pho 91.2 0.93 2E-05 40.9 7.5 78 33-117 139-217 (338)
493 PF01188 MR_MLE: Mandelate rac 91.2 2.2 4.8E-05 28.7 7.8 63 11-85 2-66 (67)
494 PRK09196 fructose-1,6-bisphosp 91.2 0.8 1.7E-05 41.5 7.1 62 35-96 175-242 (347)
495 PF00697 PRAI: N-(5'phosphorib 91.1 0.14 3E-06 42.5 2.1 92 19-119 92-185 (197)
496 TIGR02313 HpaI-NOT-DapA 2,4-di 91.1 2.4 5.1E-05 37.4 10.0 99 8-110 56-164 (294)
497 PF13714 PEP_mutase: Phosphoen 91.0 1.2 2.7E-05 38.2 7.8 98 4-114 119-223 (238)
498 COG2513 PrpB PEP phosphonomuta 91.0 2.8 6.1E-05 36.9 10.0 94 3-111 131-235 (289)
499 PRK08195 4-hyroxy-2-oxovalerat 90.9 2.8 6.2E-05 37.7 10.4 80 31-111 23-109 (337)
500 PRK13802 bifunctional indole-3 90.8 3.2 7E-05 41.1 11.4 77 33-116 70-146 (695)
No 1
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-42 Score=305.84 Aligned_cols=198 Identities=32% Similarity=0.469 Sum_probs=178.9
Q ss_pred CCChHHHHHHHHHHhhcCC-ceEEEEECCCCChHH--HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 1 MDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~--~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
|++|+++.+||++++++++ +|||||||+||+..+ +.++++.++++|+++|+||+||+.|+ |.+++||++|+++++
T Consensus 117 l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~--y~~~ad~~~I~~vk~ 194 (323)
T COG0042 117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG--YLGPADWDYIKELKE 194 (323)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc--CCCccCHHHHHHHHH
Confidence 7899999999999999995 999999999997665 88999999999999999999999985 567899999999999
Q ss_pred hCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 78 ALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 78 ~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
.++ +|||+||||+|++|+.++|+.+||||||+|||+++|||+|+++ ++..+|+..+ ++..+..+++.+|++...+
T Consensus 195 ~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i---~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~ 270 (323)
T COG0042 195 AVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI---DYLETGELLP-PTLAEVLDILREHLELLLE 270 (323)
T ss_pred hCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH---HHhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999987 5555666544 7788999999999997765
Q ss_pred CC--ChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHHh
Q 026945 157 YP--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 207 (230)
Q Consensus 157 ~~--~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 207 (230)
+. ..++.+|+|+.+|+++ +++...+|+.+++.. +..++.++++.+...
T Consensus 271 ~~~~~~~~~~r~h~~~~~~~-~~~a~~~r~~~~~~~--~~~~~~~~l~~~~~~ 320 (323)
T COG0042 271 YYGKKGLRRLRKHLGYYLKG-LPGARELRRALNKAE--DGAEVRRALEAVFEE 320 (323)
T ss_pred hccccHHHHHHHHHHHHhhc-CccHHHHHHHHhccC--cHHHHHHHHHHHHhh
Confidence 54 5689999999999998 789999999999987 899888888877654
No 2
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=1.1e-39 Score=290.08 Aligned_cols=199 Identities=25% Similarity=0.361 Sum_probs=177.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChH--HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~--~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|+||+++.+|++++++++++||++|+|+||+.+ ++.++++.++++|+++|+||+||+.+. +.|+++|+.++++++.
T Consensus 115 l~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~--~~G~a~~~~i~~ik~~ 192 (321)
T PRK10415 115 LQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSIRAVKQK 192 (321)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccc--cCCCcChHHHHHHHHh
Confidence 579999999999999999999999999998643 688999999999999999999998764 5678999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh-C
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-Y 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~-~ 157 (230)
+++|||+||||.|++|+.++++.+|||+||||||+++|||+|++++ .+...|+..+++++.++.+++.+|++.+.+ |
T Consensus 193 ~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (321)
T PRK10415 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ--HYLDTGELLPPLPLAEVKRLLCAHVRELHDFY 270 (321)
T ss_pred cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999886 345556665566778899999999996654 4
Q ss_pred CC--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 158 PV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 158 ~~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+. ++..+|+|+.||+++ +++...+|+.+++++ +++++.++++++..
T Consensus 271 ~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 271 GPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred ChHHHHHHHHHHHHHHHhc-CCchHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 54 478999999999998 799999999999998 99999999998764
No 3
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=2.7e-39 Score=286.17 Aligned_cols=191 Identities=23% Similarity=0.391 Sum_probs=168.9
Q ss_pred CCChHHHHHHHHHHhhcC--CceEEEEECCCCCh-HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVK 76 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~-~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~ 76 (230)
|++|+++.+|++++++++ ++|||||+|+||+. +++.++++.++++|+++|+||+||+.| +|+++ ++|+.+++++
T Consensus 113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik 190 (312)
T PRK10550 113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--GYRAEHINWQAIGEIR 190 (312)
T ss_pred hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--CCCCCcccHHHHHHHH
Confidence 579999999999999988 49999999999853 458899999999999999999999986 46676 4999999999
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
+.+++||++||||+|++|+.++++.+|||+||||||+++|||+|++++. |+ ++++..++++++.+|+++...
T Consensus 191 ~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~------g~--~~~~~~e~~~~~~~~~~~~~~ 262 (312)
T PRK10550 191 QRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY------NE--PRMPWPEVVALLQKYTRLEKQ 262 (312)
T ss_pred hhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc------CC--CCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998999999999999999999998864 22 235677888999999987554
Q ss_pred CC-C--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHH
Q 026945 157 YP-V--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 204 (230)
Q Consensus 157 ~~-~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 204 (230)
+. . .+..||+|+.||+++ +++..++|+.+++++ +.+++.++++++
T Consensus 263 ~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~i~~~~--~~~e~~~~~~~~ 310 (312)
T PRK10550 263 GDTGLYHVARIKQWLGYLRKE-YDEATELFQEIRALN--NSPDIARAIQAI 310 (312)
T ss_pred cCcchhHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHhh
Confidence 43 2 377899999999998 799999999999998 999999998865
No 4
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-39 Score=284.40 Aligned_cols=204 Identities=44% Similarity=0.620 Sum_probs=176.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|.+|+++.++|++++..+++|||||||++.|.+++++++++++++|++.++|||||+.|+....+++||+.|+.|++.++
T Consensus 123 ~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~ 202 (358)
T KOG2335|consen 123 MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVP 202 (358)
T ss_pred ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCc
Confidence 67999999999999999999999999999999999999999999999999999999999866688999999999999998
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhhCCC
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 159 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~~~~ 159 (230)
+||++||||.+++|+..++++||+||||+|||+|.|||+|.... + . ....+++.+|++++.+++.
T Consensus 203 ~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~---~-----~------~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 203 DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAG---Y-----G------PTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCC---C-----C------CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999996511 1 0 1235789999999988874
Q ss_pred h--hHHHHHHHHHHHhhhcCCCHHHHHHHHhcC-ccCHHHHHH-HHHHHHHhCCCCCCccCcc
Q 026945 160 P--WRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFEFLYN-LVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 160 ~--~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 218 (230)
. +..+|.|+++|++.++.-++.+|..++..+ ..++.++.+ ++..+...+.+.+......
T Consensus 269 ~~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~~~~ 331 (358)
T KOG2335|consen 269 LSSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDFLEELVLMVRKRVEDGFGRGVEE 331 (358)
T ss_pred CchhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHHHHHHHHHHHhhhccccccCccc
Confidence 4 899999999999999998888999998876 224555444 6666777777776655544
No 5
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=5.6e-40 Score=290.53 Aligned_cols=194 Identities=34% Similarity=0.521 Sum_probs=153.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|+||+++.+|++++++++++|||||+|+|++ .+++.++++.++++|+++|+||+||+.|+ +.+++||+.++++++.
T Consensus 104 l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~--~~~~a~w~~i~~i~~~ 181 (309)
T PF01207_consen 104 LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR--YKGPADWEAIAEIKEA 181 (309)
T ss_dssp GC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC--CTS---HHHHHHCHHC
T ss_pred hcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc--CCcccchHHHHHHhhc
Confidence 6899999999999999999999999999987 67899999999999999999999999986 5679999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHh-hC
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCE-KY 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~-~~ 157 (230)
+++||++||||+|++|+.++++++||||||||||++.|||+|++..... .+...+.++..+..+++.+|++... .|
T Consensus 182 ~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (309)
T PF01207_consen 182 LPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIK---EGEPEPFPPIAERLDIILRHYDYMEEFY 258 (309)
T ss_dssp -TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHH---HHTT--S--HHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhc---cCCCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999522111 1222223335678999999999654 34
Q ss_pred C--ChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHH
Q 026945 158 P--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 202 (230)
Q Consensus 158 ~--~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~ 202 (230)
+ ..+..+++|+.+|+++ +++...+|+.++++. +.+++.+.++
T Consensus 259 ~~~~~~~~~~k~~~~y~~~-~~~~~~~r~~l~~~~--~~~e~~~~l~ 302 (309)
T PF01207_consen 259 GEEKALRQMRKHLKWYFKG-FPGARKFRRELNKCK--TLEEFLELLE 302 (309)
T ss_dssp HCCHHHHHHHTTCCCCTTT-STTHHHHHHHHCCH---SHHHHHHHH-
T ss_pred ccCchHHHHHHHHHHHHcc-CCcHHHHHHHHHhhC--CHHHHhhhhc
Confidence 3 3588999999999987 788899999999998 9999988888
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=3.8e-37 Score=272.97 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=163.4
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh----HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-------CcccH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-------FRADW 69 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~----~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-------~~~~~ 69 (230)
|++|+++.+|++++++++++|||||+|+|++. +++.++++.++++|+++|+||+||+.. .+++ ++++|
T Consensus 105 l~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~-qg~sg~~~~~~~~~~~ 183 (318)
T TIGR00742 105 MGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL-SGLSPKENREIPPLRY 183 (318)
T ss_pred hcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh-cCCCccccccCCchhH
Confidence 68999999999999999999999999999853 567899999999999999999999732 1233 34699
Q ss_pred HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHH
Q 026945 70 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLV 148 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (230)
+.++++++.+ ++|||+||||+|++|+.+++. ||||||||||++.|||+|.++... +..+ ..++++..+..+.++
T Consensus 184 ~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~~--l~~~-~~~~~~~~e~~~~~~ 258 (318)
T TIGR00742 184 ERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDRE--IFNE-TDEILTRKEIVEQML 258 (318)
T ss_pred HHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHHH--hcCC-CCCCCCHHHHHHHHH
Confidence 9999999988 799999999999999999995 899999999999999999998643 3333 333456678888889
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 149 EYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 149 ~yl~~~~~~~~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+|++....++..++.+|+|+.||+++ +++...||+++++..... ....++++....
T Consensus 259 ~~~~~~~~~~~~~~~~rk~~~~y~~g-~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~ 314 (318)
T TIGR00742 259 PYIEEYLSQGLSLNHITRHLLGLFQG-KPGAKQWRRYLSENAPKA-GAGIEVLETALE 314 (318)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHcc-CCCHHHHHHHHHhcccCC-CCcHHHHHHHHH
Confidence 99886655555689999999999997 799999999999865211 245566666553
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.8e-35 Score=262.80 Aligned_cols=199 Identities=30% Similarity=0.509 Sum_probs=174.4
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++|+++.+|++++++.+++||+||+|+|++. .++.++++.++++|+++|+||+|+..+ ++.++++|+.++++++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc--cCCCchhHHHHHHHHHc
Confidence 46899999999999999999999999998753 357899999999999999999998875 46678999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH-hhC
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKY 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~-~~~ 157 (230)
+++||++||||.|++|+.++++.+|||+||+|||++.|||+|.+++. +...+...++++..++++++.+|++.+ +.|
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 268 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ--YLTTGKYKPPPTFAEKLDAILRHLQLLADYY 268 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH--HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988999999999999999999998863 333344444567778999999999975 445
Q ss_pred CC--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 158 PV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 158 ~~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+. .+..+|+|+.+|+++ +++.+.+|+.|++++ +++++.++++++..
T Consensus 269 ~~~~~~~~~r~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 269 GESKGLRIARKHIAWYLKG-FPGNAALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred CcchHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 53 488999999999986 799999999999998 99999999998765
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=3.7e-33 Score=249.25 Aligned_cols=184 Identities=18% Similarity=0.268 Sum_probs=155.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh----HHHHHHHHHHHHcCCCEEEEecCCCC-CcC-----CCCCcccHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRD-EKD-----GKKFRADWN 70 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~----~~~~~~a~~l~~~G~~~i~vh~rt~~-~~~-----~~~~~~~~~ 70 (230)
|++|+++.+|++++++++++||+||+|++++. .++.++++.++++|+++|+||+|+.. +.+ ...++++|+
T Consensus 115 ~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 115 MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYD 194 (333)
T ss_pred hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHH
Confidence 57999999999999999999999999998642 46789999999999999999999863 211 122568999
Q ss_pred HHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 71 AIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 71 ~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
.++++++.+ ++|||+||||+|++|+.++++ ||||||||||++.|||+|+++....+ |...++++..+.++.+.+
T Consensus 195 ~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 269 (333)
T PRK11815 195 RVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELF---GEPAPPLSRSEVLEAMLP 269 (333)
T ss_pred HHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhc---CCCCCCCCHHHHHHHHHH
Confidence 999999986 899999999999999999997 69999999999999999999864322 333334567788888888
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 026945 150 YLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN 190 (230)
Q Consensus 150 yl~~~~~~~~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~ 190 (230)
|++....++..+..+|+|+.+|+++ +++...||+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~ 309 (333)
T PRK11815 270 YIERHLAQGGRLNHITRHMLGLFQG-LPGARAWRRYLSENA 309 (333)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence 8886655666689999999999998 799999999998874
No 9
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=205.45 Aligned_cols=162 Identities=17% Similarity=0.337 Sum_probs=134.7
Q ss_pred CCChHHHHHHHHHHhhcCC-ceEEEEECCCC--ChHHHHHHHHHHH-HcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLE-DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~--~~~~~~~~a~~l~-~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
|.+|..+.++++++...++ +|||||||.|. +..-+.+++..+. +.|++++|+|||++.|+ |+..+||++|.++.
T Consensus 371 l~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQR--YTK~AnWdYi~e~a 448 (614)
T KOG2333|consen 371 LNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQR--YTKSANWDYIEECA 448 (614)
T ss_pred hcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhh--hhcccChHHHHHHH
Confidence 5789999999999988774 69999999985 3345667777777 99999999999999987 56689999999998
Q ss_pred hhC-C-ccEEEcCCCCCHHHHHHHHHhhC-CcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHH
Q 026945 77 NAL-R-IPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKL 153 (230)
Q Consensus 77 ~~~-~-ipvi~nGgI~s~~da~~~l~~~g-adgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~ 153 (230)
+.. + +|+|+||||.|++|..+.+.+++ +|+||||||+|-.||||.+++...++ ..+..+++++++.|.++
T Consensus 449 ~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~w-------D~sSteRldiL~df~ny 521 (614)
T KOG2333|consen 449 DKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHW-------DISSTERLDILKDFCNY 521 (614)
T ss_pred HhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcC-------CccchHHHHHHHHHHhh
Confidence 875 3 89999999999999988888766 99999999999999999999875432 35677999999999998
Q ss_pred H-hhCCC---hhHHHHHHHHHH
Q 026945 154 C-EKYPV---PWRMIRSHVHKL 171 (230)
Q Consensus 154 ~-~~~~~---~~~~~r~h~~~~ 171 (230)
. ++||. .+...|+++..+
T Consensus 522 GLeHWGSDt~GVetTRRFlLE~ 543 (614)
T KOG2333|consen 522 GLEHWGSDTKGVETTRRFLLEF 543 (614)
T ss_pred hhhhcCCccccHHHHHHHHHHH
Confidence 6 56664 255566665443
No 10
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.91 E-value=8e-24 Score=179.56 Aligned_cols=109 Identities=25% Similarity=0.299 Sum_probs=98.6
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|+||+++.++++++++ .++||+||+|++++..++.++++.++++|+++|+||.+... .+.++|+.|+++++.++
T Consensus 117 l~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 117 LKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFN 190 (231)
T ss_pred cCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcC
Confidence 5799999999999995 58999999999887678999999999999999999975432 12389999999999985
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+|||+||||+|++|+.++++ +|||+||+|||++.|
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 99999999999999999998 899999999999976
No 11
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.91 E-value=5.8e-24 Score=180.06 Aligned_cols=122 Identities=41% Similarity=0.679 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+|+++.++++++++.+++||+||+|.+|+.. ++.++++.++++|+++|+||+|+..+. +.++++|+.++++++.++
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999999999998765 899999999999999999999997653 445789999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+||++||||.|++|+.++++.+|||+||+||+++.|||+|+++..
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence 999999999999999999987899999999999999999998764
No 12
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.91 E-value=7.7e-24 Score=180.55 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|+||+++.++++++++ .++||+||+|++++ .++.++++.++++|++.|+++.+ .+ + +.+||+.|++++ ++
T Consensus 122 l~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~~--~~--g--~~ad~~~I~~i~--~~ 191 (233)
T cd02911 122 LKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVDAM--DP--G--NHADLKKIRDIS--TE 191 (233)
T ss_pred cCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECcC--CC--C--CCCcHHHHHHhc--CC
Confidence 5799999999999998 59999999999998 78999999999999998776543 21 1 268999999997 78
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+|||+||||+|++|+.++++ +|||+||+||+ .|||+|+++.
T Consensus 192 ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 192 LFIIGNNSVTTIESAKEMFS-YGADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred CEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC--CCchHHHHhh
Confidence 99999999999999999998 89999999999 9999998764
No 13
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.2e-22 Score=177.61 Aligned_cols=167 Identities=26% Similarity=0.451 Sum_probs=147.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+.+|+.+..|+.++.+...+||+||||+.++.++++++++.+.+.|+..|+||+||+++++. .+++-++++.+.+.++
T Consensus 131 Lt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~--~~~~~~~i~~i~~~~~ 208 (477)
T KOG2334|consen 131 LTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQ--EPATKDYIREIAQACQ 208 (477)
T ss_pred hcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCC--CCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999998643 4788899999999987
Q ss_pred -ccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 81 -IPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 81 -ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
|||++||+..+ +.|+....+.+|+++|||+|.+..||.+|..- +..+..+.+++|++++.+
T Consensus 209 ~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~e---------------G~~~~~~~~~~fl~~a~~ 273 (477)
T KOG2334|consen 209 MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREE---------------GCLSEKEVIREFLRLAVQ 273 (477)
T ss_pred cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeec---------------CCchHHHHHHHHHHHHHH
Confidence 99999999988 78888888889999999999999999999952 234567889999999999
Q ss_pred CCChhHHHHHHHHHHHhhhcCCCHHHHH
Q 026945 157 YPVPWRMIRSHVHKLLGEWFRIQPGVRE 184 (230)
Q Consensus 157 ~~~~~~~~r~h~~~~l~~~~~~~~~~r~ 184 (230)
|.+.....+..+..++.+.+.+.|..+.
T Consensus 274 ~dn~~~ntkycl~~il~~~~~~~p~~~~ 301 (477)
T KOG2334|consen 274 YDNHYGNTKYCLQRILRGIQEGCPRGKR 301 (477)
T ss_pred HhhcccchhHHHHHHhhhhhccCchhhH
Confidence 9888888899998888887666665543
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.85 E-value=4.6e-21 Score=168.95 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=104.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCCc
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~~ 66 (230)
+.+|+++.++++++++.+++||+||+|. +.++..++++.++++|+|+|++|+++... ..+++|+
T Consensus 139 ~~~~~~~~eiv~~vr~~~~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 139 GQDPELSADVVKAVKDKTDVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 4689999999999999999999999995 44678899999999999999999654210 1234555
Q ss_pred ccH----HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 67 ADW----NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 67 ~~~----~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+.| +.++++++.+++|||+||||.|++|+.+++. +|||+||+||+++.|||+|.++..
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHH
Confidence 544 7889999999999999999999999999997 899999999999999999998753
No 15
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.83 E-value=3.4e-20 Score=163.58 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe---------------------cCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDE 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh---------------------~rt~~~ 59 (230)
++||+.+.++++++++.+++||+||+|. +..+..++++.++++|++.|+++ +|+..
T Consensus 150 ~~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~- 226 (299)
T cd02940 150 GQDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTY- 226 (299)
T ss_pred ccCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCc-
Confidence 4689999999999999999999999996 44578899999999999999854 44443
Q ss_pred cCCCCCccc----HHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchh
Q 026945 60 KDGKKFRAD----WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 124 (230)
Q Consensus 60 ~~~~~~~~~----~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~ 124 (230)
.+++|++. |+.++++++.+ ++|||+||||.|.+|+.+++. +|||+||+||+++. .|.++.++.
T Consensus 227 -gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 227 -GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred -CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 35777776 89999999999 899999999999999999997 99999999999998 899998765
No 16
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.81 E-value=1.6e-19 Score=158.24 Aligned_cols=122 Identities=21% Similarity=0.335 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--------------CCCCCc-
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKFR- 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------~~~~~~- 66 (230)
++|+.+.++++++++.+++||++|++.+.+.+++.++++.++++|+|+|++|+++.... .++++.
T Consensus 145 ~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~ 224 (289)
T cd02810 145 QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAP 224 (289)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHH
Confidence 58999999999999999999999999988878899999999999999999998764210 112222
Q ss_pred ---ccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 67 ---ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 67 ---~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
..+++++++++.+ ++||+++|||+|++|+.+++. .|||+||+||+++.| |++|.++.
T Consensus 225 ~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 225 IRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 2578899999998 899999999999999999997 899999999999999 99999875
No 17
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.81 E-value=1.1e-19 Score=163.08 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC--------ChHHHHHHHHHHHHcC-CCEEEEecCCCCCc--------C-CCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP--------NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEK--------D-GKK 64 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~--------~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~--------~-~~~ 64 (230)
+.+++.+|+++|+++++.+++||+|+++ +.++++++++.|+++| +|+|+||+++.... . .+.
T Consensus 190 R~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~ 269 (343)
T cd04734 190 RMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMP 269 (343)
T ss_pred HhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCC
Confidence 4689999999999999888888888864 3568999999999998 89999976543321 0 112
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhh
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 127 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~ 127 (230)
...+|+.++++++.+++||++||+|++++++++++++++||+||+||+++.|||+++++..+.
T Consensus 270 ~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~ 332 (343)
T cd04734 270 PGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGR 332 (343)
T ss_pred cchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCC
Confidence 234789999999999999999999999999999999889999999999999999999887643
No 18
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.81 E-value=2e-19 Score=160.48 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHhhcCC-----ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCC
Q 026945 1 MDNLPLVKSLVEKLALNLN-----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKK 64 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-----~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~ 64 (230)
+++|+.+.++++++++.++ +||+||++..++.++..++++.++++|+++|++|+|+.... .+++
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 3689999999999999886 99999999877767889999999999999999999875321 2345
Q ss_pred Ccc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 65 FRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 65 ~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
|++ .|+.++++++.+ ++||+++|||.|++|+.+++. +|||+||+||+++.+ ||+|.++.
T Consensus 259 G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 259 GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHH
Confidence 543 378999999998 799999999999999999997 999999999999875 99999875
No 19
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.80 E-value=2e-19 Score=161.52 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHhhcCC-----ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-----------cCCCCC
Q 026945 2 DNLPLVKSLVEKLALNLN-----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKF 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-----~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-----------~~~~~~ 65 (230)
++|+.+.++++++++.++ +||+||++...+.++..++++.++++|+|+|++|+++... ..+++|
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG 268 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG 268 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc
Confidence 588999999999999887 9999999987777789999999999999999999987432 123444
Q ss_pred cc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 66 RA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 66 ~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ .|++++++++.+ ++||+++|||.|++|+.+++. +|||+||+||+++. +||+|+++..
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHH
Confidence 43 788999999998 799999999999999999998 89999999999987 5999998753
No 20
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.80 E-value=3.6e-19 Score=159.40 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-CCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-~~~~~~~~~~i~~i 75 (230)
+..++.||+++|+++++.||++|++. |.+.+++.++++.++++|+|+|+||+++..... ...+..+|++++++
T Consensus 191 R~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~i 270 (337)
T PRK13523 191 RYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHI 270 (337)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHH
Confidence 46789999999999999999999997 346788999999999999999999999743211 11123478999999
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++.+++||+++|+|.|++++++++++++||+||+||+++.||++++++...
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~ 321 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKE 321 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHH
Confidence 999999999999999999999999988899999999999999999988653
No 21
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.79 E-value=9.4e-19 Score=153.93 Aligned_cols=121 Identities=22% Similarity=0.321 Sum_probs=102.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCCcc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRA 67 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~~~ 67 (230)
.+|+++.++++++++.+++||++|++. +.++..++++.++++|+|.|++++++... ..+++|++
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 214 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPA 214 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcc
Confidence 689999999999999999999999985 44578899999999999999987543210 01234443
Q ss_pred ----cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 68 ----DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 68 ----~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
.++.++++++.+++|||++|||.|++|+.++++ .|||+||+||+++.|||+|+++..
T Consensus 215 ~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~-~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 215 IKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLM-AGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred cchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEchhhhcChHHHHHHHH
Confidence 468999999999999999999999999999997 899999999999999999998754
No 22
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.79 E-value=8.6e-19 Score=154.34 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc--CCCEEEE----------ec-CCC-----CCc-CC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV----------HG-RTR-----DEK-DG 62 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~--G~~~i~v----------h~-rt~-----~~~-~~ 62 (230)
.||+.+.+|++++++.+++||+||+|.+++..+..++++.+.++ |++.|++ |. |+. .+. .+
T Consensus 140 ~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 140 YDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 48999999999999999999999999988877888999999998 9999995 43 222 111 12
Q ss_pred CCCcc-c---HHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 63 KKFRA-D---WNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 63 ~~~~~-~---~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++|++ + +..++++++.++ +|||+||||.|.+|+.+++. +|||+||+|++++. +||+|+++..
T Consensus 220 ~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 288 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEK 288 (294)
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHH
Confidence 33332 3 456677888884 99999999999999999997 99999999999995 9999998753
No 23
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.79 E-value=1.1e-18 Score=153.87 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCC--
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF-- 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~-- 65 (230)
++|+++.++++++++.+++||+||++. +.++..++++.++++|+|.|++++++... ..++++
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 217 (301)
T PRK07259 140 TDPELAYEVVKAVKEVVKVPVIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPA 217 (301)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcC
Confidence 579999999999999999999999995 44578899999999999999987643211 012233
Q ss_pred --cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 66 --RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 66 --~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+..+++++++++.+++||+++|||.|++|+.+++. .|||+||+||+++.+|++|.++..
T Consensus 218 ~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 218 IKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred cccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHH
Confidence 23689999999999999999999999999999997 899999999999999999998764
No 24
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.78 E-value=2.7e-18 Score=156.26 Aligned_cols=124 Identities=24% Similarity=0.320 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC--------------------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV--------------------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~--------------------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~ 60 (230)
+++++.+|+++|++++ ++||++|++. |.+.++++++++.++++|+|+|+||+++..+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 5789999999999998 6899999995 23557889999999999999999999875432
Q ss_pred C-----CCCC-cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 61 D-----GKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 61 ~-----~~~~-~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
. .+.+ ...++.++.+++.+++||+++|+|++++++.+++++++||+||+||+++.|||+++++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcC
Confidence 1 1111 2346788999999999999999999999999999988899999999999999999998754
No 25
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.78 E-value=2.2e-18 Score=154.50 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEEC------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC---------CC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---------KF 65 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~---------~~ 65 (230)
+++++.+++++|++++ ++||++|++ .|++.+++.++++.|+++|+++|+||+++..+.... ..
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 5789999999999998 589999997 467888999999999999999999999986543210 01
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
...++..+++++.+++||+++|+|.+++++.+++++.+||+|++||+++.|||+++++.+
T Consensus 278 ~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~ 337 (338)
T cd04733 278 AYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLA 337 (338)
T ss_pred hhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence 224688889999999999999999999999999998889999999999999999998753
No 26
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.77 E-value=1.7e-18 Score=159.37 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=104.1
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---------------------ecCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---------------------HGRTRDE 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---------------------h~rt~~~ 59 (230)
+++|+.+.+|++++++.+++||+||+|. +..+..++++.++++|++.|++ |+|+..
T Consensus 150 ~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~- 226 (420)
T PRK08318 150 GQVPELVEMYTRWVKRGSRLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSH- 226 (420)
T ss_pred cCCHHHHHHHHHHHHhccCCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCc-
Confidence 3689999999999999999999999995 4456789999999999999994 444433
Q ss_pred cCCCCCcc----cHHHHHHHHhhC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 60 KDGKKFRA----DWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 60 ~~~~~~~~----~~~~i~~i~~~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
.+++|++ .|++|+++++.+ ++|||+||||.|.+|+.+++. +|||+||+||+++. .|.++.++..
T Consensus 227 -gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 227 -GGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred -ccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHH
Confidence 3567776 599999999987 799999999999999999997 99999999999999 7998887754
No 27
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.75 E-value=1.5e-17 Score=148.03 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCC------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCccc
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~ 68 (230)
+++++.++++++++.+ ++||++|++.. ++.+++.++++.+++.|+++|+||+++..+... .....+
T Consensus 190 r~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 190 RARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 3678899999999988 78999999964 456789999999999999999999998654321 112457
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.++.+++.+++||+++|+|+|++++.++++..|||+|++||+++.||+++.++.
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 88999999999999999999999999999999779999999999999999998765
No 28
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.74 E-value=1.8e-17 Score=142.06 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHHHhhcC--CceE---EEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNL--NVPV---SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~--~~pv---svKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
++||+++.++++.+.+++ .+|+ .+|++ ||+ ..++.++++.+++.|++.|++|+|++.+. +.| +||+.++
T Consensus 108 l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~--~~G-~d~~~i~ 183 (241)
T PRK14024 108 LENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT--LTG-PNLELLR 183 (241)
T ss_pred hCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC--ccC-CCHHHHH
Confidence 479999999999998765 3455 55554 674 23678999999999999999999999975 445 5999999
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHH--hhCCcEEEEehhhhhCCccccc
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLE--ETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~--~~gadgVmigR~~l~nP~lf~~ 122 (230)
++++.+++||++||||+|++|+.++++ .+||||||+||+++.++.-+.+
T Consensus 184 ~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~ 234 (241)
T PRK14024 184 EVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPE 234 (241)
T ss_pred HHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHH
Confidence 999999999999999999999999864 4799999999999999765544
No 29
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.74 E-value=2.1e-17 Score=148.05 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCC--CCCcCCCCCcccHHH
Q 026945 2 DNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRT--RDEKDGKKFRADWNA 71 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt--~~~~~~~~~~~~~~~ 71 (230)
.+++++.+++++|++.+ ++||++|++. +++.+++.++++.+++.|+++|+||... ..+........+++.
T Consensus 202 nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~ 281 (336)
T cd02932 202 NRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPF 281 (336)
T ss_pred HHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHH
Confidence 36889999999999998 7999999994 5677889999999999999999999543 322111112335688
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.+++++.+++||+++|+|.|++++.++++++.||+||+||+++.||++..++.
T Consensus 282 ~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 282 AERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 89999999999999999999999999999777999999999999999988654
No 30
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.73 E-value=3.8e-17 Score=146.50 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCC---------CChHHHHHHHHHHHHcCCCEEEE-ecCCCCCcCCCCCcccHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g---------~~~~~~~~~a~~l~~~G~~~i~v-h~rt~~~~~~~~~~~~~~~ 71 (230)
+..++.||+++|+++++. ||++|++.. .+.+++.++++.|++.|+|+|+| |+++..+. +..+++.
T Consensus 201 R~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~ 276 (338)
T cd02933 201 RARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDF 276 (338)
T ss_pred hhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHH
Confidence 467899999999998854 899999863 24578899999999999999999 56554332 4678999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++|++.+++||+++|+|+ ++++++++++.+||+|++||+++.|||+++++..+
T Consensus 277 ~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g 330 (338)
T cd02933 277 LDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERLKNG 330 (338)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcC
Confidence 9999999999999999997 99999999988899999999999999999998754
No 31
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.71 E-value=3.2e-17 Score=147.75 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHhhcCC----ceEEEEECCCC--------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKLALNLN----VPVSCKIRVFP--------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~----~pvsvKiR~g~--------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+..++.||+++|+++++ .++.|++|+++ +.++++++++.++++|+|+|+||+++........+..+++
T Consensus 193 R~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~ 272 (353)
T cd04735 193 RMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQT 272 (353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHH
Confidence 46789999999999886 55666666643 3568999999999999999999986543321122233577
Q ss_pred HHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.++.+++.+ ++||++||+|+|++++.++++. |||+||+||+++.||+++.++..+
T Consensus 273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~~~G 329 (353)
T cd04735 273 IMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVEKIKEG 329 (353)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHHHcC
Confidence 778888876 7999999999999999999986 999999999999999999988754
No 32
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.69 E-value=1.3e-16 Score=143.87 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC--------CChHHHHHHHHHHHHcCCCEEEEecC-----CCCCcCCCCCcc-c
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF--------PNLQDTIKYAKMLEDAGCSLLAVHGR-----TRDEKDGKKFRA-D 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g--------~~~~~~~~~a~~l~~~G~~~i~vh~r-----t~~~~~~~~~~~-~ 68 (230)
+++++.+++++++++++.++.+++|++ ++.++++++++.|+++|+|+|+|+.. +... ..+.+.. .
T Consensus 186 R~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~-~~~~~~~~~ 264 (353)
T cd02930 186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI-ATSVPRGAF 264 (353)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc-cccCCchhh
Confidence 478999999999999865555555553 35678999999999999999999643 2211 1112222 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+..+++++.+++||+++|++++++++++++++++||+||+||+++.|||+++++..+
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 4567899999999999999999999999999988899999999999999999988754
No 33
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.68 E-value=5.1e-16 Score=139.02 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCCCcc----c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFRA----D 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~~~~----~ 68 (230)
++.+.++++++++.+++||+||++.+. .+..++++.++++|++.|++|+|+.... .++++++ .
T Consensus 150 ~~~~~eil~~v~~~~~iPV~vKl~p~~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~a 227 (334)
T PRK07565 150 EQRYLDILRAVKSAVSIPVAVKLSPYF--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLP 227 (334)
T ss_pred HHHHHHHHHHHHhccCCcEEEEeCCCc--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHH
Confidence 356889999999999999999998644 4678999999999999999999864321 1123332 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
++.++++++.+++|||++|||+|.+|+.+++. +|||+||+||+++.+ |.++.++.
T Consensus 228 l~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 228 LRWIAILSGRVGADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 67788898889999999999999999999997 999999999999995 98777654
No 34
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.67 E-value=5.6e-16 Score=138.27 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCCCcc----c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFRA----D 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~~~~----~ 68 (230)
++.+.++++++++.+++||+||++.. ..+..++++.++++|++.|++|+|+.... .+++|++ .
T Consensus 148 ~~~~~eiv~~v~~~~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a 225 (325)
T cd04739 148 EQRYLDILRAVKSAVTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP 225 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHH
Confidence 36788999999999999999999964 34688999999999999999999863211 1123332 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
+++++++++.+++||+++|||.|++|+.+++. +|||+||+|++++.+ |.++.++.
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 67888999888999999999999999999997 999999999999995 99888765
No 35
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.66 E-value=7e-16 Score=151.56 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcC-CCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKD-GKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~-~~~~~~~~~~i 72 (230)
...++.||+++|++++ ++||++|++. |++.++++++++.++++|+|+|+||+ ++..+.. .+......++.
T Consensus 600 R~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 679 (765)
T PRK08255 600 RLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFA 679 (765)
T ss_pred HhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHH
Confidence 4678999999999987 5899999997 34567899999999999999999994 4433211 11112345677
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC-ccccchh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP-ALFAGFR 124 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP-~lf~~~~ 124 (230)
+++|+.+++||++||+|++++++++++++++||+||+||+++.|| |.++...
T Consensus 680 ~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~ 732 (765)
T PRK08255 680 DRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAA 732 (765)
T ss_pred HHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHH
Confidence 899999999999999999999999999989999999999999999 5455443
No 36
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.66 E-value=8.2e-16 Score=138.78 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC----------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV----------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~----------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+..++.||+++|++++ ++||.+|++. |.+.+++.++++.++++|+|+|+++.+.... ..+. +.+++
T Consensus 193 R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~-~~~~~ 270 (361)
T cd04747 193 RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFE-GSELN 270 (361)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcC-ccchh
Confidence 4678999999999988 5899999994 2345678899999999999999887753211 1222 34678
Q ss_pred HHHHHHhhCCccEEEcCCC------------------CCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNV------------------RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI------------------~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+.+++.+++||+++|+| .|++++++++++++||+||+||+++.|||++.++.++
T Consensus 271 ~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 271 LAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred HHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 8899999999999999998 6999999999988899999999999999999998764
No 37
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.64 E-value=1.6e-15 Score=137.61 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC----------CChHHHHHHHHHHHHcCCCEEEEecCCCCCc----CCCCCccc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF----------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g----------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~----~~~~~~~~ 68 (230)
+..++.||+++|+++++.++.|++|++ ++.++++++++.+++. +|++.++....... ..+.+...
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCcccc
Confidence 578999999999999876666666653 2356788999999876 89999987543211 11223456
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
|+.++++++.+++||+++|+|++++++++++++++||+||+||+++.|||++.+++.+
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 335 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREG 335 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcC
Confidence 8889999999999999999999999999999988899999999999999999998764
No 38
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.59 E-value=1e-14 Score=123.82 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEEC----CCCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIR----VFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR----~g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.+|+.+.++++.+.+++.+++.+|.+ .+|. ..+..++++.+++.|++.|.+|++++.+. +.| +||+.+++
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~--~~G-~d~~~i~~ 184 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGT--LSG-PNVEATRE 184 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCC--cCC-CCHHHHHH
Confidence 57889999999886654445554421 1342 23578999999999999999999998864 334 79999999
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++.+++||+++|||+|++|+.++++.+||||||+||+++..
T Consensus 185 l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 185 LAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 999999999999999999999999986669999999999876
No 39
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.59 E-value=1.7e-14 Score=123.57 Aligned_cols=115 Identities=25% Similarity=0.363 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEEECC----------CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCKIRV----------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvKiR~----------g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~ 67 (230)
+.+|+.+.++++.+.+ .+-+++.+|.|. +++ ..++.++++.+++.|+++|.+|+++.... ..++
T Consensus 104 ~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~---~~g~ 180 (243)
T cd04731 104 VENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT---KKGY 180 (243)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC---CCCC
Confidence 4689999999998853 455666666543 222 34688999999999999999999987532 2356
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+.++++++.+++||+++|||+|++|+.++++.+|||+||+||+++..-.
T Consensus 181 ~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~ 231 (243)
T cd04731 181 DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCC
Confidence 999999999999999999999999999999999889999999998876543
No 40
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.58 E-value=1.4e-14 Score=130.75 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=93.7
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
.+|+++.+++++++++. |+||+|+++ .++.++++.++++|++.|++|+||++|.+. .+..+|..+.++++.+++
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~--~~~~e~a~~l~eAGad~I~ihgrt~~q~~~-sg~~~p~~l~~~i~~~~I 189 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSP--QNAREIAPIVVKAGADLLVIQGTLVSAEHV-STSGEPLNLKEFIGELDV 189 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCC--cCHHHHHHHHHHCCCCEEEEeccchhhhcc-CCCCCHHHHHHHHHHCCC
Confidence 37999999999999974 999999954 478899999999999999999999988642 345689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++ |+|.|.+++.++++ +|||+||+||+.-.
T Consensus 190 PVI~-G~V~t~e~A~~~~~-aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 190 PVIA-GGVNDYTTALHLMR-TGAAGVIVGPGGAN 221 (369)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCCCc
Confidence 9998 99999999999997 99999999997754
No 41
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.57 E-value=2.5e-14 Score=123.78 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=94.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCC-----------C---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF-----------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g-----------~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~ 66 (230)
+.+|+++.++++.+.+. .+++++++|.+ | ......++++.+++.|++.+.+|++++.+. +.|
T Consensus 107 ~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~--~~G- 182 (258)
T PRK01033 107 LEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGT--MKG- 182 (258)
T ss_pred hcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCC--cCC-
Confidence 36889999999988533 36778877755 1 123578999999999999999999999865 334
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||+.++++++.+++||+++|||.|.+|+.++++.+|||||++|+++...
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 69999999999999999999999999999999977999999999977765
No 42
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.55 E-value=7.4e-14 Score=118.76 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCC------------C---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF------------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g------------~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~ 65 (230)
+.+|+++.++++...+. .+++++++|.+ | ...++.++++.+++.|+++|++|++++.+. . .
T Consensus 107 l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~--~-~ 182 (232)
T TIGR03572 107 LENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT--M-K 182 (232)
T ss_pred hcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC--c-C
Confidence 46899999999887443 26788887763 1 123578999999999999999999888653 2 3
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+++|+.++++++.+++||+++|||+|++|+.+++..+|||+||+|+++
T Consensus 183 g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 469999999999999999999999999999997878999999999975
No 43
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.54 E-value=5e-14 Score=119.61 Aligned_cols=116 Identities=24% Similarity=0.314 Sum_probs=92.4
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEEEC----CCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCKIR----VFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvKiR----~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+.||+++.++.+.+.+ .+-+++.+|.+ -+| ...+..++++.+++.|++.|++|++++.+. +. +++|+.+
T Consensus 106 l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~--~~-g~~~~~i 182 (234)
T cd04732 106 VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT--LS-GPNFELY 182 (234)
T ss_pred HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc--cC-CCCHHHH
Confidence 3578999999888755 32233333321 122 234678999999999999999999988754 23 4899999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
+++++.+++||+++|||++.+|+.++++ .|||+||+||+++.++--+
T Consensus 183 ~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~~~ 229 (234)
T cd04732 183 KELAAATGIPVIASGGVSSLDDIKALKE-LGVAGVIVGKALYEGKITL 229 (234)
T ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCH
Confidence 9999999999999999999999999997 7999999999999997533
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.53 E-value=7.7e-14 Score=122.91 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC---------------CcCCCCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------EKDGKKFR 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~---------------~~~~~~~~ 66 (230)
++|+.+.++++++++.+.+||.||+.. +..+..++|+.+.++|+|.|++..-+.. ...+.+|+
T Consensus 144 ~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~ 221 (310)
T COG0167 144 QDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGP 221 (310)
T ss_pred cCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcc
Confidence 389999999999999999999999985 6788999999999999999998763321 11234554
Q ss_pred c----cHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchhh
Q 026945 67 A----DWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 125 (230)
Q Consensus 67 ~----~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~~ 125 (230)
+ ....++++.+.++ +|||+.|||.|++|+.+.+. .||+.|.++.+++.+ |++|.++..
T Consensus 222 ~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~~ 286 (310)
T COG0167 222 PLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFIL-AGASAVQVGTALIYKGPGIVKEIIK 286 (310)
T ss_pred cchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHH-cCCchheeeeeeeeeCchHHHHHHH
Confidence 4 4677888989876 99999999999999999997 899999999999998 999998754
No 45
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.51 E-value=1.2e-13 Score=122.06 Aligned_cols=98 Identities=27% Similarity=0.261 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
.++++.+++.+++||++|... +.+.++.++++|++.|++|++...+. +.+++.|+.+.++++.+ ++|||+
T Consensus 161 ~~~i~~l~~~~~~pvivK~v~------s~~~a~~a~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~ipvia 232 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKGIL------TPEDALRAVDAGADGIVVSNHGGRQL--DGAPATIDALPEIVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHHhcCCCEEEeecC------CHHHHHHHHHCCCCEEEEcCCCCCCC--CCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 367888888889999999753 24668999999999999988765442 34678899999999887 499999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|||++..|+.+++. .|||+||+||.++
T Consensus 233 ~GGI~~~~d~~kal~-lGAd~V~ig~~~l 260 (299)
T cd02809 233 DGGIRRGTDVLKALA-LGADAVLIGRPFL 260 (299)
T ss_pred eCCCCCHHHHHHHHH-cCCCEEEEcHHHH
Confidence 999999999999997 9999999999433
No 46
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.51 E-value=2e-13 Score=115.90 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+|+.+.++++.+... .+.+++++|. +|. ..+..++++.+++.|++.+++|++++.+.. . +.||+.+
T Consensus 106 ~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~--~-g~~~~~i 181 (230)
T TIGR00007 106 ENPDLVKELLKEYGPE-RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTL--S-GPNFELT 181 (230)
T ss_pred hCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCc--C-CCCHHHH
Confidence 5788888998888522 2455565553 342 135688999999999999999999987642 2 5799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++++.+++||+++|||+|.+|+.++++ +||||||+|++++.+
T Consensus 182 ~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 182 KELVKAVNVPVIASGGVSSIDDLIALKK-LGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEeHHHHcC
Confidence 9999999999999999999999999886 999999999999987
No 47
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.50 E-value=9.6e-14 Score=124.36 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHhhcCC-------ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-----------CcCCC
Q 026945 2 DNLPLVKSLVEKLALNLN-------VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------EKDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-------~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-----------~~~~~ 63 (230)
.+++.+.++++++++.++ +||.+|+....+.++..++++.++++|++.|++..++.. ...++
T Consensus 186 ~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGl 265 (335)
T TIGR01036 186 QYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGL 265 (335)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcc
Confidence 578999999999998776 999999998766668899999999999999999876532 11234
Q ss_pred CCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchh
Q 026945 64 KFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 124 (230)
Q Consensus 64 ~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~ 124 (230)
+|++ -..+++++++.+ ++|||++|||.|++|+.+++. .|||.|++|++++. +|+++.++.
T Consensus 266 SG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 266 SGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHHHH
Confidence 4443 346777787777 599999999999999999997 89999999999988 599998765
No 48
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.47 E-value=4.7e-13 Score=115.37 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=92.6
Q ss_pred CCChHHHHHHHHHHh-h----cCC-------ceEEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc
Q 026945 1 MDNLPLVKSLVEKLA-L----NLN-------VPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~-~----~~~-------~pvsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~ 66 (230)
+++|+++.++.+.+. + .++ .|++||+|.+++. ....++++.+++.|++.|.+|+..+... ...
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~---~~g 183 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT---KNG 183 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC---CCC
Confidence 368999999999873 1 223 4678999987642 3578999999999999999988654321 124
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.||+.++++++.+++||+++|||.|.+|+.++++.+|||+||+|+++...
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 59999999999999999999999999999999987899999999988765
No 49
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.47 E-value=5.9e-13 Score=113.71 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=93.8
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEE---EC-CCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCK---IR-VFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvK---iR-~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++|+++.++.+.+.. .+-+.+++| +. -||+. .+..++++.+++.|++.|++|++++... ..+.+|+.+
T Consensus 109 ~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~---~~g~~~~~i 185 (241)
T PRK13585 109 VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL---LEGVNTEPV 185 (241)
T ss_pred hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC---cCCCCHHHH
Confidence 3588888888888743 322233433 11 14432 2678999999999999999999987642 235799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+++++.+++||+++|||+|++|+.+++ .+||++|++|++++.+|..+.+.
T Consensus 186 ~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~gv~vgsa~~~~~~~~~~~ 235 (241)
T PRK13585 186 KELVDSVDIPVIASGGVTTLDDLRALK-EAGAAGVVVGSALYKGKFTLEEA 235 (241)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEEHHHhcCCcCHHHH
Confidence 999999999999999999999999965 59999999999999999977754
No 50
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.46 E-value=8e-13 Score=119.32 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEECC-------CCChHHHHHHHHHHHHcC-CCEEEEecCCCCC--cCCCC-CcccHH
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIRV-------FPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDE--KDGKK-FRADWN 70 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR~-------g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~--~~~~~-~~~~~~ 70 (230)
-.++.||+++++++++ .||.+++.. |++.+++.++++.|++.| +++|++++..... ..... +.....
T Consensus 199 ~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~ 278 (363)
T COG1902 199 ARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVE 278 (363)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHH
Confidence 4688999999999984 689999886 235678999999999999 7999998765431 11111 233456
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
....++..+.+||+++|+|++++.+++++++.+||.|.+||+++.||++..+++.+
T Consensus 279 ~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g 334 (363)
T COG1902 279 FAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence 67778888899999999999999999999966699999999999999999988754
No 51
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.46 E-value=5.1e-13 Score=120.86 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc-cHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~~i 81 (230)
+|+++.+++++++++ + |++|+|+. ..+..++++.+.++|+++|++|+||+.+.+. +.. +|..+.++++..++
T Consensus 116 ~p~l~~~iv~~~~~~-~--V~v~vr~~--~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 116 KPELITERIAEIRDA-G--VIVAVSLS--PQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CHHHHHHHHHHHHhC-e--EEEEEecC--CcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHHHHHHHHHCCC
Confidence 689999999999986 3 66677763 3567899999999999999999999987643 344 78888888888899
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
|||+ |+|.|.+++.++++ +|||+||+|+|-
T Consensus 189 pVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 189 PVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999 99999999999997 999999999874
No 52
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.46 E-value=6.3e-13 Score=114.74 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHh-hcC--Cc-----eE------EEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC
Q 026945 2 DNLPLVKSLVEKLA-LNL--NV-----PV------SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~-~~~--~~-----pv------svKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~ 65 (230)
.+|+++.++.+... +++ .+ ++ -||+|.+++ ..+..++++.+++.|++.|.+|++++.. +.+
T Consensus 108 ~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g---~~~ 184 (254)
T TIGR00735 108 KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG---TKS 184 (254)
T ss_pred hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc---CCC
Confidence 58999999888774 332 12 11 377777553 3468899999999999999999988753 445
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++|+.++++++.+++||+++|||+|++|+.++++.+||||||+|+.++..
T Consensus 185 g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 185 GYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 789999999999999999999999999999999987779999999987654
No 53
>PLN02826 dihydroorotate dehydrogenase
Probab=99.40 E-value=3.5e-12 Score=116.82 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=99.9
Q ss_pred CCChHHHHHHHHHHhhc---------CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC------------C
Q 026945 1 MDNLPLVKSLVEKLALN---------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~---------~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~------------~ 59 (230)
+++++.+.++++++++. ..+||.||+....+.++..++++.+.+.|++.|++...+.. .
T Consensus 235 lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~ 314 (409)
T PLN02826 235 LQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADE 314 (409)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhccccccc
Confidence 35788899999998643 46899999986556567889999999999999999875431 1
Q ss_pred cCCCCCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 60 KDGKKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 60 ~~~~~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
..+.+|++ -.+.++++++.+ ++|||++|||.|.+|+.+++. .||+.|+++++++.+ |+++.++.
T Consensus 315 ~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 315 AGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHHHH
Confidence 12345544 367788888887 699999999999999999997 899999999999885 98887765
No 54
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.40 E-value=4e-12 Score=115.04 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECC---------CCChHH-HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRV---------FPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~---------g~~~~~-~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
-.++.||+++|+++++ -+|.+|+.. |.+.++ ++++++.|++.|+|+|+|+....... .+....+.
T Consensus 209 ~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~ 284 (362)
T PRK10605 209 ARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG----EPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC----ccccHHHH
Confidence 4688999999999884 257888754 234566 79999999999999999987432211 12344667
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++|++.+++||+++|++ |++.+++++++..||.|++||+++.||++..++.++
T Consensus 285 ~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 285 EKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred HHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 88999999999999996 899999999977799999999999999999988754
No 55
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.38 E-value=1.6e-12 Score=112.00 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+||++++.+.. .+.+|+.++++++.+++||+++|||+|.+|+++++. +||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~---~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEG---RDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc---CcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 46889999999999999999999986432 268999999999999999999999999999999998 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||++|.++..
T Consensus 106 ~l~~p~~~~ei~~ 118 (253)
T PRK02083 106 AVANPELISEAAD 118 (253)
T ss_pred HhhCcHHHHHHHH
Confidence 9999999998764
No 56
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.36 E-value=2.4e-12 Score=110.17 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|++|.+++.. +.++.+++.++++++.+++||+++|||+|.+|+.++++ .|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~---~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS---EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc---ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECch
Confidence 378899999999999999999998753 33477999999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 103 ~~~~p~~~~~i~~ 115 (243)
T cd04731 103 AVENPELIREIAK 115 (243)
T ss_pred hhhChHHHHHHHH
Confidence 9999999988754
No 57
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.36 E-value=6e-12 Score=114.34 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=95.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-------C------------cCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------E------------KDG 62 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-------~------------~~~ 62 (230)
++|+.+.++++.+++.+++||.||+. ++..+..++++.+.++|++.|++..++.. . ..+
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vKLs--Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GG 242 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAKMT--PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGG 242 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEEeC--CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCC
Confidence 58999999999999989999999998 45566889999999999999999775432 0 011
Q ss_pred CCCcc-cH---HHHHHHHhhC------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchhh
Q 026945 63 KKFRA-DW---NAIKAVKNAL------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 125 (230)
Q Consensus 63 ~~~~~-~~---~~i~~i~~~~------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~~ 125 (230)
++|++ .| ..++++++.+ ++||+++|||.|.+|+.+++. .||+.|+++.+++.+ |.++.++..
T Consensus 243 lSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~~ 315 (385)
T PLN02495 243 YSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLCA 315 (385)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHHH
Confidence 23332 22 2234455544 499999999999999999997 899999999999998 999987653
No 58
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.36 E-value=1.5e-12 Score=116.98 Aligned_cols=123 Identities=26% Similarity=0.383 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC------ChHHHHHHHHHHHHcCCCEEEEecCCC------CCc--CCCCCcc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTR------DEK--DGKKFRA 67 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~------~~~~~~~~a~~l~~~G~~~i~vh~rt~------~~~--~~~~~~~ 67 (230)
-.++.||+++|++++ ++||.+|+.... +.+++.++++.+++.|++.+.++.... ... .......
T Consensus 199 ~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (341)
T PF00724_consen 199 ARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGY 278 (341)
T ss_dssp HHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTT
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch
Confidence 368899999999987 688999998732 246778899999999999887643211 000 1111223
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+....+++.+++||+++|++.+++.+++++++..||.|++||+++.||++..++..+
T Consensus 279 ~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g 337 (341)
T PF00724_consen 279 NLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREG 337 (341)
T ss_dssp THHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHT
T ss_pred hhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcC
Confidence 45778899999999999999999999999999988899999999999999999988754
No 59
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.35 E-value=4.1e-12 Score=112.75 Aligned_cols=122 Identities=14% Similarity=0.217 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC----------CC--C---C--cCCCCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR----------TR--D---E--KDGKKF 65 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r----------t~--~---~--~~~~~~ 65 (230)
||+.+.++++++++.+++||.+|+....+..+..+.+..+.+.|++.|..-.+ +. . . ..+.+|
T Consensus 141 d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG 220 (310)
T PRK02506 141 DFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG 220 (310)
T ss_pred CHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc
Confidence 78999999999999999999999997655545555555556667776544321 11 0 0 122344
Q ss_pred cc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 66 RA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 66 ~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ -...++++++.+ ++|||++|||.|.+|+.+++. +||+.||++.+++. +|.+|.++..
T Consensus 221 ~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 286 (310)
T PRK02506 221 DYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLTK 286 (310)
T ss_pred hhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHHH
Confidence 43 345677777777 699999999999999999996 99999999999998 7999997653
No 60
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.35 E-value=7.3e-12 Score=112.19 Aligned_cols=110 Identities=27% Similarity=0.363 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------CCC--CCcccH---
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------DGK--KFRADW--- 69 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------~~~--~~~~~~--- 69 (230)
.+...+.++.+++.+++||.||... . ..+.+.++.++++|+|+|+||++..... ..+ ....+|
T Consensus 164 f~~~le~i~~i~~~~~vPVivK~~g-~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~ 240 (333)
T TIGR02151 164 FKGWLEKIAEICSQLSVPVIVKEVG-F--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIP 240 (333)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC-C--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHh
Confidence 3445688999999999999999763 2 2357899999999999999999753210 000 011344
Q ss_pred --HHHHHHHh-hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 70 --NAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 70 --~~i~~i~~-~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.++++ ..++|||++|||+++.|+.+++. .|||+|++||+++..-
T Consensus 241 t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLa-lGAd~V~igr~~L~~~ 290 (333)
T TIGR02151 241 TAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIA-LGADAVGMARPFLKAA 290 (333)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHH-hCCCeehhhHHHHHHH
Confidence 45666666 56899999999999999999998 7999999999988543
No 61
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.32 E-value=1.2e-11 Score=111.58 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~ 85 (230)
.+-++.+++.+++||.||- .. ..+.++.+.++|++.|.|++....|. +.+++.|+.+.++++.++ +||++
T Consensus 217 w~~i~~l~~~~~~PvivKG---v~---~~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~ 288 (367)
T TIGR02708 217 PRDIEEIAGYSGLPVYVKG---PQ---CPEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVF 288 (367)
T ss_pred HHHHHHHHHhcCCCEEEeC---CC---CHHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEe
Confidence 3567888888899999992 21 36788999999999885543323332 446788999999998874 99999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|||++..|+.++|. .|||+|||||.+|.
T Consensus 289 dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 289 DSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred eCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999998 99999999997665
No 62
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.30 E-value=5.2e-11 Score=106.02 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEec---CCCCCc-CCCCCcccHHH--HHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVHG---RTRDEK-DGKKFRADWNA--IKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh~---rt~~~~-~~~~~~~~~~~--i~~ 74 (230)
+.+.+.++++.+++.++ +||.++ +- +.+-++.+.++|+|.+.|+. |...+. ....+.++|.. ++.
T Consensus 123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~ 195 (326)
T PRK05458 123 HSDSVINMIQHIKKHLPETFVIAGNVG-------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 195 (326)
T ss_pred chHHHHHHHHHHHhhCCCCeEEEEecC-------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHH
Confidence 34678899999999884 888886 43 45678899999999999873 331121 11123567764 889
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC 154 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~ 154 (230)
+++.+++|||++|||+++.|+.++|. .|||+||+|+.+++-..-..+. .. ..-..+.+|+..+
T Consensus 196 ~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG~~~~~~~espg~~-----------~~-----~~g~~~k~y~g~~ 258 (326)
T PRK05458 196 CAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIGSLFAGHEESPGKT-----------VE-----IDGKLYKEYFGSA 258 (326)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEechhhcCCccCCCce-----------ee-----ecchhHHHhhCcH
Confidence 99888999999999999999999998 6999999999887533322211 00 0012234444333
Q ss_pred hhCC-------C---hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHH
Q 026945 155 EKYP-------V---PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYN 199 (230)
Q Consensus 155 ~~~~-------~---~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~ 199 (230)
.+|. . .....|-|+..++..+ ..++|..+..+...++.|+.+
T Consensus 259 ~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l---~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 259 SEFQKGEYKNVEGKKILVPHKGSLKDTLTEM---EQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred hhhccccccccCCceEEecccCCHHHHHHHH---HHHHHHHHHHhCCCCHHHHhc
Confidence 2231 0 1223345666666643 357788777765447777764
No 63
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.29 E-value=1.6e-11 Score=108.17 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC----------CCC-----cCCCCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT----------RDE-----KDGKKFRA 67 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt----------~~~-----~~~~~~~~ 67 (230)
+++...++++.+++..++||.||+....+.......+..+.+.|++.|+...++ ... ..+.+|++
T Consensus 146 ~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~ 225 (295)
T PF01180_consen 146 DPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPA 225 (295)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGG
T ss_pred CHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchh
Confidence 577888999999998899999999975444555667777779999999854332 111 01134443
Q ss_pred ----cHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh-hhCCccccchhh
Q 026945 68 ----DWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 125 (230)
Q Consensus 68 ----~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~-l~nP~lf~~~~~ 125 (230)
-..+++++++.++ +|||++|||.|++|+.+++. .||+.|+++.++ +.+|+++.++..
T Consensus 226 i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 226 IRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLM-AGASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp GHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHH
T ss_pred hhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHH-hCCCHheechhhhhcCcHHHHHHHH
Confidence 3567888888888 99999999999999999997 899999999999 668999998764
No 64
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.25 E-value=3.2e-11 Score=108.51 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
.+..+.++.+++.+++||.+|-- .+.+.++.+.++|+|.|.| ||+ .+. +.+++.++.+.++++.+ +
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhGG--r~l--d~~~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGI------QSPEDADVAINAGADGIWVSNHGG--RQL--DGGPASFDSLPEIAEAVNHR 276 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecC------CCHHHHHHHHHcCCCEEEEeCCCC--ccC--CCCchHHHHHHHHHHHhCCC
Confidence 34557788899888999999942 1346788999999999999 664 222 33567789999999887 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||+++|||++..|+.++|. .|||+|||||+++....
T Consensus 277 i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~~la 313 (351)
T cd04737 277 VPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLYGLA 313 (351)
T ss_pred CeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 99999999999999999998 89999999998877543
No 65
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.25 E-value=1e-10 Score=105.56 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------cC------CC---CCc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KD------GK---KFR 66 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------~~------~~---~~~ 66 (230)
+.+.+.+.++++++.+++||.||.... ..+.+.++.++++|+|+|+|+|+.... +. .+ .+.
T Consensus 170 ~f~~~le~i~~i~~~~~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~ 246 (352)
T PRK05437 170 DFRGWLDNIAEIVSALPVPVIVKEVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGI 246 (352)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccC
Confidence 344567899999999999999999732 234688999999999999999874210 10 00 011
Q ss_pred ccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+..+.+.++++. .++||+++|||+|..|+.+++. .|||+|++||+++..
T Consensus 247 pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~-~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 247 PTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALA-LGADAVGMAGPFLKA 296 (352)
T ss_pred CHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH-cCCCEEEEhHHHHHH
Confidence 223567777777 5899999999999999999998 699999999998864
No 66
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.25 E-value=7e-11 Score=100.17 Aligned_cols=114 Identities=27% Similarity=0.345 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+||+++.+++++..+.+ -|++-.|. ||.. -+..++++.+++.|+..|.+|..+++. +-.++|++.+
T Consensus 109 ~~p~~v~~~~~~~g~ri--vv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DG---tl~G~n~~l~ 183 (241)
T COG0106 109 KNPDLVKELCEEYGDRI--VVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDG---TLSGPNVDLV 183 (241)
T ss_pred cCHHHHHHHHHHcCCcE--EEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEeccccc---ccCCCCHHHH
Confidence 68999999999998554 44444444 4532 257899999999999999999998874 3446899999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhhhhCCcccc
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESLLENPALFA 121 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~l~nP~lf~ 121 (230)
.++.+.+++||+++|||.|.+|+..+.+ . |+.||.+||+++..-.-+.
T Consensus 184 ~~l~~~~~ipviaSGGv~s~~Di~~l~~-~~G~~GvIvG~ALy~g~~~l~ 232 (241)
T COG0106 184 KELAEAVDIPVIASGGVSSLDDIKALKE-LSGVEGVIVGRALYEGKFTLE 232 (241)
T ss_pred HHHHHHhCcCEEEecCcCCHHHHHHHHh-cCCCcEEEEehHHhcCCCCHH
Confidence 9999999999999999999999997665 6 8999999999998765444
No 67
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.23 E-value=3.6e-11 Score=103.79 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+++..++... ..+.+++.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 3688999999999999999999987642 3367999999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999988753
No 68
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.23 E-value=4.3e-11 Score=101.55 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.++||.+++... ..+.+++.++++++.+++||+++|||+|+++++++++ +|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 4788999999999999999999876521 1367899999999999999999999999999999996 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999988754
No 69
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.23 E-value=1.2e-10 Score=104.02 Aligned_cols=110 Identities=30% Similarity=0.424 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------cCCC------CCcccH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGK------KFRADW 69 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------~~~~------~~~~~~ 69 (230)
|.+.+.+.++.+++.+++||.+|.... ..+.+.++.++++|+|.|.|+|+.... +... ....+|
T Consensus 162 df~~~~~~i~~l~~~~~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 162 DFRGWLERIEELVKALSVPVIVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 344566889999999999999998642 234688999999999999999852210 0000 001223
Q ss_pred -----HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 70 -----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 70 -----~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..+.++++.+ ++|||++|||++..|+.+++. .|||+|++||++|..
T Consensus 239 g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~-lGAd~V~i~~~~L~~ 290 (326)
T cd02811 239 GIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALA-LGADLVGMAGPFLKA 290 (326)
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEcHHHHHH
Confidence 5667777777 899999999999999999998 799999999987743
No 70
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.18 E-value=1.8e-10 Score=99.87 Aligned_cols=51 Identities=24% Similarity=0.477 Sum_probs=46.5
Q ss_pred cccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 66 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.++|+.++++++..++||+ +.|||.|++++..+++ +|||+|++|++++..+
T Consensus 189 ~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 189 QAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSG 241 (293)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCC
Confidence 4689999999999999998 9999999999999997 8999999999988543
No 71
>PLN02411 12-oxophytodienoate reductase
Probab=99.18 E-value=3.1e-10 Score=103.82 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEECCCC---------ChHHHHHHHHHHHHc------CCCEEEEecCCCCCcC--C--C
Q 026945 4 LPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDA------GCSLLAVHGRTRDEKD--G--K 63 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~-pvsvKiR~g~---------~~~~~~~~a~~l~~~------G~~~i~vh~rt~~~~~--~--~ 63 (230)
-.++.||+++|+++++- .|.+|+.... ..++..++++.+++. |+|+|+|+........ . .
T Consensus 215 ~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~ 294 (391)
T PLN02411 215 CRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGR 294 (391)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccc
Confidence 46889999999999842 4778877421 124567788888763 5999999875432100 0 0
Q ss_pred CC-ccc-HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 64 KF-RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 64 ~~-~~~-~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+ ... ....+++++.+++||+++|++ +.+.+++++++..||.|.+||+++.||++..+++++
T Consensus 295 ~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g 358 (391)
T PLN02411 295 HGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLN 358 (391)
T ss_pred cCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcC
Confidence 01 111 245688999999999999999 679999999866699999999999999999988764
No 72
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.11 E-value=8e-10 Score=98.03 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=77.6
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEcCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
+++.+++. +++|.+.+. +.+.++.++++|+|.|++|++.... +.+ ..+|..+.++++.+++|||++||
T Consensus 101 ~i~~lk~~-g~~v~~~v~-------s~~~a~~a~~~GaD~Ivv~g~eagG---h~g~~~~~~ll~~v~~~~~iPviaaGG 169 (307)
T TIGR03151 101 YIPRLKEN-GVKVIPVVA-------SVALAKRMEKAGADAVIAEGMESGG---HIGELTTMALVPQVVDAVSIPVIAAGG 169 (307)
T ss_pred HHHHHHHc-CCEEEEEcC-------CHHHHHHHHHcCCCEEEEECcccCC---CCCCCcHHHHHHHHHHHhCCCEEEECC
Confidence 44445443 445544332 3577899999999999999995543 222 34799999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|.+.+++.+++. .|||+||+|+.++.-+..
T Consensus 170 I~~~~~~~~al~-~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 170 IADGRGMAAAFA-LGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCHHHHHHHHH-cCCCEeecchHHhccccc
Confidence 999999999998 899999999999887654
No 73
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.11 E-value=8.6e-10 Score=93.07 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.+.++++.+++..++|+.+.+. +.+.+..+.++|++++.+ |+++.... .....+++.++++++.+++||
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipv 180 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKLGFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPV 180 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHcCCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCE
Confidence 7788888887765688887653 223457888999999965 45554332 223468999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++|||++++++.++++ .|||+|++|++++...+
T Consensus 181 ia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 181 IAEGRINSPEQAAKALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred EEeCCCCCHHHHHHHHH-CCCCEEEEchHHhChHh
Confidence 99999999999999998 79999999998765544
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.07 E-value=2.1e-09 Score=87.03 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
|+...++++++++.+ ++|+.+|++........ .+.+.|+++|.+++++..+......+.....+..++...++|
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 172 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCC
Confidence 456788999999887 89999999875432221 178899999999998775432111111124566666778899
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|+++|||++++++.++++ .|||+|++||
T Consensus 173 i~~~GGi~~~~~~~~~~~-~Gad~v~vgs 200 (200)
T cd04722 173 VIAGGGINDPEDAAEALA-LGADGVIVGS 200 (200)
T ss_pred EEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence 999999999999999998 5999999997
No 75
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.07 E-value=1.2e-09 Score=93.79 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEE-----CC---CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKI-----RV---FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKi-----R~---g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+++|+++.++.+...+.+-+.+.+|. .+ ||. ..+..++++.+++.|+..|.++...+... ..++|++
T Consensus 107 ~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt---~~G~d~~ 183 (243)
T TIGR01919 107 LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL---SGGPNEL 183 (243)
T ss_pred hCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc---CCCcCHH
Confidence 36899999998887554333333441 11 342 23578999999999999999999877643 3467999
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHH--HHhhCCcEEEEehhhhhCCcccc
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~--l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.++++++.+++||+++|||.|.+|+.++ +...|++||++|++++.+---+.
T Consensus 184 l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 184 LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHH
Confidence 9999999999999999999999999986 43469999999999987754333
No 76
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.06 E-value=1.5e-09 Score=94.02 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 67 ADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
++++.++++++..++||+ +.|||.|++++..+++ .|||||++|+++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 578999999998899998 9999999999999997 89999999999885
No 77
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.05 E-value=1.4e-09 Score=91.80 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.+.++++.+++..++|+.+.+. + .+-++.+.+.|++++.++.+ +.... ...+.+++.++++++.+++|
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iP 175 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFDFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCP 175 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCCEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCC
Confidence 56778888887644678776543 2 23357889999999987533 32211 12345789999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|++.|||+|++++.++++ .|+|+|++|++++..
T Consensus 176 via~GGI~t~~~~~~~l~-~GadgV~iGsai~~~ 208 (221)
T PRK01130 176 VIAEGRINTPEQAKKALE-LGAHAVVVGGAITRP 208 (221)
T ss_pred EEEECCCCCHHHHHHHHH-CCCCEEEEchHhcCC
Confidence 999999999999999997 799999999986653
No 78
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.97 E-value=1.5e-09 Score=91.03 Aligned_cols=90 Identities=21% Similarity=0.356 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+..+.+++|+.+.+.|+|.|++-..|.+... ...++++++++++.+.||+...|||+|.+|+.++|. .|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g---r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG---RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc---chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeC
Confidence 3457899999999999999999999886432 257899999999999999999999999999999997 899999999
Q ss_pred hhhhhCCccccchh
Q 026945 111 ESLLENPALFAGFR 124 (230)
Q Consensus 111 R~~l~nP~lf~~~~ 124 (230)
.+++.||.+.+++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999987654
No 79
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.97 E-value=2.9e-09 Score=90.48 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+++...+.. ...+.+++.++++.+.+++||+++|||+|.+++.++++ .||++|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~---~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASK---RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcc---cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 378899999999999999999988753 23367999999999999999999999999999999876 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999998887654
No 80
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.96 E-value=7.4e-09 Score=92.02 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe---cCC---CCCcCCCCCcccH--HHHHHHH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---GRT---RDEKDGKKFRADW--NAIKAVK 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh---~rt---~~~~~~~~~~~~~--~~i~~i~ 76 (230)
+.+.+.++.+++.+..|+-++=.++ +.+.++.+.++|++.|.|+ |++ +... + .+..+| ..+.+++
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV~-----t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~-g-~g~~~~~l~ai~ev~ 194 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNVG-----TPEAVRELENAGADATKVGIGPGKVCITKIKT-G-FGTGGWQLAALRWCA 194 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCC-----CHHHHHHHHHcCcCEEEECCCCCccccceeee-c-cCCCchHHHHHHHHH
Confidence 6778889999988766654444332 5678999999999999998 443 2221 1 123344 4888899
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+..++|||++|||++..|+.++|. .|||+||+||.+-+
T Consensus 195 ~a~~~pVIadGGIr~~~Di~KALa-~GAd~Vmig~~~ag 232 (321)
T TIGR01306 195 KAARKPIIADGGIRTHGDIAKSIR-FGASMVMIGSLFAG 232 (321)
T ss_pred HhcCCeEEEECCcCcHHHHHHHHH-cCCCEEeechhhcC
Confidence 888999999999999999999998 79999999986654
No 81
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.95 E-value=1.4e-08 Score=86.79 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=87.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+||+++.++.+...++ +-+++-.|- +|. ..+..++++.+++.|+..+.+....+.. +..++|++.+
T Consensus 110 ~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG---t~~G~~~~li 184 (234)
T PRK13587 110 QDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDG---KMSGPNFELT 184 (234)
T ss_pred cCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcC---CCCccCHHHH
Confidence 6899999998888544 334443332 342 2346899999999999999998877663 3346799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+++.+.+++||++.|||+|++|+.++++ .|+++|.+|++++.
T Consensus 185 ~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivG~a~~~ 226 (234)
T PRK13587 185 GQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEhHHHHh
Confidence 9999999999999999999999999996 89999999999886
No 82
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.92 E-value=1e-08 Score=91.70 Aligned_cols=109 Identities=24% Similarity=0.198 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++... +||.+ |. -.+.+.++.+.++|+|+|.++.. ++... ..+.++|..+..+
T Consensus 118 ~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~--g~g~p~~~~i~~v 189 (325)
T cd00381 118 HSVYVIEMIKFIKKKYPNVDVIA----GN--VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVT--GVGVPQATAVADV 189 (325)
T ss_pred CcHHHHHHHHHHHHHCCCceEEE----CC--CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeC--CCCCCHHHHHHHH
Confidence 34567788888888652 55544 21 23457788999999999999632 22221 2345688888887
Q ss_pred HhhC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 76 KNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 76 ~~~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
.+.. ++|||++|||.++.|+.+++. .|||+||+|+.+..-.+-.
T Consensus 190 ~~~~~~~~vpVIA~GGI~~~~di~kAla-~GA~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 190 AAAARDYGVPVIADGGIRTSGDIVKALA-AGADAVMLGSLLAGTDESP 236 (325)
T ss_pred HHHHhhcCCcEEecCCCCCHHHHHHHHH-cCCCEEEecchhcccccCC
Confidence 6654 699999999999999999997 8999999999998865543
No 83
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.91 E-value=2.6e-08 Score=91.17 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC------CCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~------~~~~~~~~~~i~~ 74 (230)
.+|+-+.++++.+++.++ +||.+|+-.+.+ ..++++.++..|+|+|+|.+....... ...+.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~---~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHG---EGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCC---HHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 457778999999999987 999999986533 347788888888999999886322110 0112222334444
Q ss_pred HHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 75 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 75 i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.+ ++||++.|||+|..|+.+++. .|||+|.+||++|.--
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala-LGAd~V~ig~~~l~al 321 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALA-LGADAVGIGTAALIAL 321 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH-cCCCeeeechHHHHhc
Confidence 44432 699999999999999999998 7999999999998643
No 84
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.91 E-value=1.9e-08 Score=86.90 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHH-hhcCCceEEEEECC--------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKL-ALNLNVPVSCKIRV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v-~~~~~~pvsvKiR~--------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
||+++.++++.. .+.+-+.+.+|..- ||. .-+..+++..+.+.|+..|.++...++.+ ..++|.+
T Consensus 121 ~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGt---l~G~d~e 197 (262)
T PLN02446 121 DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGK---RLGIDEE 197 (262)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCc---ccCCCHH
Confidence 399999999999 44444445555211 342 23578899999999999999999877743 3367999
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhh--hhCCcccc
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESL--LENPALFA 121 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~--l~nP~lf~ 121 (230)
.++++++.+++|||++|||.|.+|+.++.+.. |+.+|.+|+++ +.+-.-+.
T Consensus 198 l~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ 251 (262)
T PLN02446 198 LVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYD 251 (262)
T ss_pred HHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHH
Confidence 99999999999999999999999999988743 78999999999 55543333
No 85
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.91 E-value=1.1e-08 Score=87.23 Aligned_cols=111 Identities=27% Similarity=0.411 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHhh-cCCceEEEEEC--C---CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSCKIR--V---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsvKiR--~---g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.||+++.++.+.... .+-+.+.+|-. + +|.. .+..++++.+.+.|+..+.++.-.+... ..++|++.+
T Consensus 107 ~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt---~~G~d~~~~ 183 (229)
T PF00977_consen 107 EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT---MQGPDLELL 183 (229)
T ss_dssp HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT---SSS--HHHH
T ss_pred hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC---cCCCCHHHH
Confidence 489999999999866 33334444432 1 3432 3688999999999999999999877643 335799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++++.+++||+++|||.|.+|+.++.+ .|+++|++|++++..
T Consensus 184 ~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G~~gvivg~al~~g 226 (229)
T PF00977_consen 184 KQLAEAVNIPVIASGGVRSLEDLRELKK-AGIDGVIVGSALHEG 226 (229)
T ss_dssp HHHHHHHSSEEEEESS--SHHHHHHHHH-TTECEEEESHHHHTT
T ss_pred HHHHHHcCCCEEEecCCCCHHHHHHHHH-CCCcEEEEehHhhCC
Confidence 9999999999999999999999999884 899999999998754
No 86
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.91 E-value=2e-08 Score=86.19 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
++||+++.++ ....+. +-+++-.|- ||. .-+..++++.+++.|+..|.+....+... ..++|++.
T Consensus 106 ~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt---~~G~d~el 179 (241)
T PRK14114 106 LEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT---LQEHDFSL 179 (241)
T ss_pred hCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc---CCCcCHHH
Confidence 3689999998 454333 445554443 332 22578999999999999999998777643 23579999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHh----hC-CcEEEEehhhhhCCc
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEE----TG-CEGVLSAESLLENPA 118 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~----~g-adgVmigR~~l~nP~ 118 (230)
++++++.+++||+++|||.|.+|+.++.+. .| ++||.+|++++.+--
T Consensus 180 ~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 180 TRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGIL 231 (241)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCC
Confidence 999999999999999999999999988763 15 999999999887653
No 87
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.90 E-value=2.4e-08 Score=84.74 Aligned_cols=101 Identities=23% Similarity=0.370 Sum_probs=74.9
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+++.+++ .++++.+++. + .+.++.+.+.|+++|.++++.............++.++++++.+++||+++|||
T Consensus 94 ~~~~~~~-~~i~~i~~v~---~----~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 94 VVERLKA-AGIKVIPTVT---S----VEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred HHHHHHH-cCCEEEEeCC---C----HHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 3444443 3567766653 1 245677788999999999874321111111245889999999899999999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++++++.++++ .|+|||++|++++..+..
T Consensus 166 ~~~~~v~~~l~-~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 166 ADGRGIAAALA-LGADGVQMGTRFLATEES 194 (236)
T ss_pred CCHHHHHHHHH-cCCcEEEEchhhhcCccc
Confidence 99999999997 899999999999987764
No 88
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.89 E-value=8.1e-09 Score=87.59 Aligned_cols=89 Identities=27% Similarity=0.421 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.+++........ + .+.+++.++++++.+++||++.|||+|.+|+.++++ .|||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 3688999999999999999999754321 1 257899999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999988876543
No 89
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.89 E-value=1.4e-08 Score=91.34 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh---hC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---AL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~ 79 (230)
++....+.++.+++.+++||.+|-= . +.+.++.+.++|++.|.|++....+... .....+.+.++.+ .+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivKgv---~---~~~dA~~a~~~G~d~I~vsnhgG~~~d~--~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLKGV---Q---TVEDAVLAAEYGVDGIVLSNHGGRQLDT--APAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcC---C---CHHHHHHHHHcCCCEEEEECCCcccCCC--CCCHHHHHHHHHHHHHHh
Confidence 3456678899999999999999922 1 3567889999999999998743332221 1233455666655 23
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++|||+.|||++..|+.++|. .|||+|+|||+++..+.
T Consensus 269 ~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 269 FDKIEVYVDGGVRRGTDVLKALC-LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 599999999999999999997 89999999999998764
No 90
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.88 E-value=1.7e-08 Score=87.49 Aligned_cols=103 Identities=20% Similarity=0.320 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE--EecCCCC------------------------Cc
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA--VHGRTRD------------------------EK 60 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~--vh~rt~~------------------------~~ 60 (230)
+.+++..++...+.|+.+-++ +++-+....+.|+|+|- ++|-|.. ..
T Consensus 100 ~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~ 172 (283)
T cd04727 100 ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEEL 172 (283)
T ss_pred HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 678888898877999999887 34457778899999994 4445543 10
Q ss_pred CC--CCCcccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 61 DG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 61 ~~--~~~~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.. ....++|+.++++++.+++||+ +.|||.|++++..+++ .|||+|++|++++.-+
T Consensus 173 ~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~a~ 232 (283)
T cd04727 173 YAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSE 232 (283)
T ss_pred HhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhcCC
Confidence 00 0124689999999999999997 9999999999999997 8999999999988533
No 91
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.87 E-value=1.5e-08 Score=83.15 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE--EecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA--VHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~--vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.|+.+.++++.+++.. .++..-+. +++-+....++|+|.|. ++|-|....+ ..+|++.++++++. +
T Consensus 77 Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~~A~~~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~ 144 (192)
T PF04131_consen 77 RPETLEELIREIKEKY-QLVMADIS-------TLEEAINAAELGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-D 144 (192)
T ss_dssp -SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHHHHHHTT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-T
T ss_pred CCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHHHHHHcCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-C
Confidence 4677889999999987 88888776 34557888999999994 4555554332 46799999999986 9
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+|||+-|+|+||+++.++|+ .||++|.+|. ++.+|++..
T Consensus 145 ~pvIaEGri~tpe~a~~al~-~GA~aVVVGs-AITrP~~It 183 (192)
T PF04131_consen 145 VPVIAEGRIHTPEQAAKALE-LGAHAVVVGS-AITRPQEIT 183 (192)
T ss_dssp SEEEEESS--SHHHHHHHHH-TT-SEEEE-H-HHH-HHHHH
T ss_pred CcEeecCCCCCHHHHHHHHh-cCCeEEEECc-ccCCHHHHH
Confidence 99999999999999999997 8999999996 677777543
No 92
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.84 E-value=1.3e-08 Score=86.87 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+.+.|++.+++-..+.... + ...+++.++++.+..++|++++|||+|.+++..+++ .|||+|++|..+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~-~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~-~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE-G--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLD-LGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc-C--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHH-cCCCEEEEChHH
Confidence 678999999999999987655443211 1 256899999999999999999999999999999996 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.+|+++.++..
T Consensus 109 ~~~~~~~~~i~~ 120 (241)
T PRK13585 109 VENPEIVRELSE 120 (241)
T ss_pred hhChHHHHHHHH
Confidence 999999887754
No 93
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.83 E-value=6.4e-08 Score=82.61 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVF-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
++ +++.++++...+. .+-+++-.+-+ .+..+..++++.+++. ++.+++....+... ..+.|++.++++.
T Consensus 112 ~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~---~~g~~~~~~~~i~ 185 (233)
T cd04723 112 PS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS---GQGPDLELLERLA 185 (233)
T ss_pred cc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc---CCCcCHHHHHHHH
Confidence 46 7778888887541 23445444433 1234578899999999 99999998776532 2367999999999
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+++||++.|||+|.+|+.++++ .|+++|.+|++++.+-
T Consensus 186 ~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivGsal~~g~ 225 (233)
T cd04723 186 ARADIPVIAAGGVRSVEDLELLKK-LGASGALVASALHDGG 225 (233)
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEehHHHcCC
Confidence 999999999999999999999997 7999999999998773
No 94
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.83 E-value=3.2e-08 Score=89.38 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
|+.+..+.++.+++.++.||.+|= + - +.+-++.+.+.|+|.|.|++....|..+ .++..+.+.++++.+++|
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiKg-V-~----~~eda~~a~~~G~d~I~VSnhGGrqld~--~~~~~~~L~ei~~~~~~~ 291 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVKG-I-V----TAEDAKRCIELGADGVILSNHGGRQLDD--AIAPIEALAEIVAATYKP 291 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEec-C-C----CHHHHHHHHHCCcCEEEECCCCcCCCcC--CccHHHHHHHHHHHhCCe
Confidence 344556788999999999999993 2 1 3456888899999999986543333222 245678889998888999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|++.|||++..|+.++|. .|||+||+||+++..
T Consensus 292 vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~~ 324 (361)
T cd04736 292 VLIDSGIRRGSDIVKALA-LGANAVLLGRATLYG 324 (361)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHH
Confidence 999999999999999997 899999999977753
No 95
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.82 E-value=6.4e-08 Score=82.65 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=84.6
Q ss_pred CChHHHHHHHHHHh-hcCCceEEEEEC------C-CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 2 DNLPLVKSLVEKLA-LNLNVPVSCKIR------V-FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 2 ~~p~~~~eiv~~v~-~~~~~pvsvKiR------~-g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
++|+++.++.+... +. +-+++-.| + +|. ..+..++++.+++.|+..|.++.-.+..+ ..++|++.
T Consensus 107 ~~p~~~~~~~~~~g~~~--ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt---~~G~d~el 181 (232)
T PRK13586 107 TNFNLFHDIVREIGSNR--VLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT---TKGIDYNV 181 (232)
T ss_pred CCHHHHHHHHHHhCCCC--EEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc---CcCcCHHH
Confidence 68999999988883 33 33444432 1 342 12577999999999999999998877643 33679999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++.+++. ..|++++|||+|.+|+.++.+ .|++||.+|++++.+
T Consensus 182 ~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~gvivg~Aly~g 224 (232)
T PRK13586 182 KDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCEEEEehhhhcC
Confidence 9999876 567999999999999999875 799999999998854
No 96
>PLN02535 glycolate oxidase
Probab=98.81 E-value=3e-08 Score=89.70 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+|.+-.+-++.+++.+++||.+|-=+. .+-++.+.++|+|.|.|++....+.. .+++..+.+.++++.+ +
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKgV~~------~~dA~~a~~~GvD~I~vsn~GGr~~d--~~~~t~~~L~ev~~av~~~ 278 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKGVLT------REDAIKAVEVGVAGIIVSNHGARQLD--YSPATISVLEEVVQAVGGR 278 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEecCCC------HHHHHHHHhcCCCEEEEeCCCcCCCC--CChHHHHHHHHHHHHHhcC
Confidence 344555778888888899999994321 24478999999999999764332221 1244467788887766 6
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|||+.|||++..|+.++|. .|||+|++||+++..+.
T Consensus 279 ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 279 VPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPVIYGLA 315 (364)
T ss_pred CCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHHHhhhh
Confidence 99999999999999999997 89999999998887655
No 97
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.77 E-value=3e-08 Score=85.00 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++|+.+.+.|++.|++-.-...+ + .+.+.+.|+++.+.+++||.+.|||+|.+|+++++. .||+.|.+|.++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchH
Confidence 68899999999999999999877653 2 256889999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.||.++.++..
T Consensus 108 l~~p~l~~~i~~ 119 (241)
T PRK14024 108 LENPEWCARVIA 119 (241)
T ss_pred hCCHHHHHHHHH
Confidence 999999987753
No 98
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.77 E-value=4.5e-08 Score=89.06 Aligned_cols=103 Identities=21% Similarity=0.195 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
|.+-.+-++.+++.+++||.+|==. +.+-++.+.+.|+|.|.|++...-+. ..+++..+.+.++++.+ ++
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~------~~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~~~ 309 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGIL------HPDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGDRL 309 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCC------CHHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcCCC
Confidence 4444567888888889999999211 24567888899999999975433232 22355678888888876 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 310 ~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~l~ 342 (383)
T cd03332 310 TVLFDSGVRTGADIMKALA-LGAKAVLIGRPYAY 342 (383)
T ss_pred eEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 9999999999999999997 79999999998873
No 99
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.77 E-value=1.1e-07 Score=80.51 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHhhcCCceEEEE-ECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCK-IRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvK-iR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
++|+++.++.. -+.+.+| -++ +|. +...++.+.+.+.|+ .+.+..-.+.. ...++|++.++++++
T Consensus 113 ~~p~~l~~~~~------vvslD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dG---t~~G~d~eli~~i~~ 181 (221)
T TIGR00734 113 DITELLRECYT------VVSLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVG---TMKGPNLELLTKTLE 181 (221)
T ss_pred CCHHHHHHhhh------EEEEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCccc---cCCCCCHHHHHHHHh
Confidence 57777776541 1223333 111 343 356678888888998 67766655542 334679999999999
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+++||+++|||+|++|+.++.+ .|+|+|++|++++..
T Consensus 182 ~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g 219 (221)
T TIGR00734 182 LSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKG 219 (221)
T ss_pred hCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCC
Confidence 99999999999999999998665 799999999998754
No 100
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.77 E-value=5e-08 Score=82.01 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHHHhhcC-CceEEEEECC-C----C----------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC
Q 026945 1 MDNLPLVKSLVEKLALNL-NVPVSCKIRV-F----P----------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 64 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~-~~pvsvKiR~-g----~----------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~ 64 (230)
++||+++.++-+..-.++ -+.|.+|-+. | | +.-+++++++.+++.|+-.|.+....++. ..
T Consensus 107 v~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DG---tk 183 (256)
T COG0107 107 VKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDG---TK 183 (256)
T ss_pred hcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccc---cc
Confidence 368999988888887664 4556667653 1 1 12368999999999999999998876653 34
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+.|.+.++.+++.+++|||++||..+++++.+.+.++.||++..+.
T Consensus 184 ~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs 230 (256)
T COG0107 184 AGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAAS 230 (256)
T ss_pred cCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhh
Confidence 46799999999999999999999999999999999988899887654
No 101
>PLN02979 glycolate oxidase
Probab=98.75 E-value=6.4e-08 Score=87.14 Aligned_cols=103 Identities=27% Similarity=0.301 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
|.+.-+-++.+++.+++||.||-=. ..+-++.+.++|+|.|.|++....|.. ..++..+.+.++++.+ ++
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld--~~p~t~~~L~ei~~~~~~~~ 279 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRI 279 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHhcCCCEEEECCCCcCCCC--CchhHHHHHHHHHHHhCCCC
Confidence 3444566888899999999999643 246688999999999999876544432 2244567777787765 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 280 ~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 280 PVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred eEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 9999999999999999998 89999999996664
No 102
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.72 E-value=4.6e-08 Score=83.29 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+.+. ++.+++-.+..... + .+.+.+.++++.+.+++||++.|||+|.+|++++++ .|+++|.+|+.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~-g--~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFE-G--KPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhc-C--CcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchh
Confidence 688999999998 99999977765421 1 246899999999999999999999999999999997 799999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+ ||.+++++.
T Consensus 106 ~-~~~~l~~~~ 115 (228)
T PRK04128 106 F-DLEFLEKVT 115 (228)
T ss_pred c-CHHHHHHHH
Confidence 9 999888764
No 103
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.72 E-value=5.3e-08 Score=83.25 Aligned_cols=88 Identities=6% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 34 DTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 34 ~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.|+.+.+ .|++.|+|-.-..... ..+.+.+.|+++.+.+++||.+.|||+|.+++++++. .||+-|.+|..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~---~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~-~Ga~kvvigt~ 107 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKA---QHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFA-AGINYCIVGTK 107 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccccc---CCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHH-CCCCEEEECch
Confidence 57789999999 7999999998766532 1257899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.+++++..
T Consensus 108 a~~~~~~l~~~~~ 120 (234)
T PRK13587 108 GIQDTDWLKEMAH 120 (234)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988754
No 104
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.72 E-value=6.5e-08 Score=83.79 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+.+.|++.|++..-.+... ..+.+.+.++++.+.+++||++.|||+|.+|+.+++. .|+++|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKR---GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcC---CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChH
Confidence 3789999999999999999998766532 1257899999999999999999999999999999995 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999998887643
No 105
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.69 E-value=1.2e-07 Score=85.67 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
+.+..+-++.+++.+++||.||==+ ..+-++.+.+.|++.|.|++.-..|. ..+++..+.+.++++.+ ++
T Consensus 210 ~~~~w~~i~~~~~~~~~pvivKgv~------~~~da~~~~~~G~~~i~vs~hGGr~~--d~~~~~~~~L~~i~~~~~~~~ 281 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWKLPVIVKGVL------SPEDAKRAVDAGVDGIDVSNHGGRQL--DWGPPTIDALPEIRAAVGDDI 281 (356)
T ss_dssp TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSS--TTS-BHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHhcccCCceEEEecc------cHHHHHHHHhcCCCEEEecCCCcccC--ccccccccccHHHHhhhcCCe
Confidence 4444566888888999999999543 23557899999999999976433332 22456678888888876 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.+++. .||++|.+||.++.
T Consensus 282 ~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 282 PIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp EEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 9999999999999999998 89999999996654
No 106
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.69 E-value=1.2e-07 Score=86.23 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
-+-++.+++.++.||.+|==+ +.+-++.+.++|++.|.|++....+... .++..+.+.++.+.+ ++||++
T Consensus 234 W~di~~lr~~~~~pvivKgV~------s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~~i~~a~~~~~~vi~ 305 (381)
T PRK11197 234 WKDLEWIRDFWDGPMVIKGIL------DPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALPAIADAVKGDITILA 305 (381)
T ss_pred HHHHHHHHHhCCCCEEEEecC------CHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHHHHHHHhcCCCeEEe
Confidence 344788888899999999643 2456888899999999996543323211 133457777777665 599999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.|||++..|+.++|. .|||+||+||.++.-
T Consensus 306 dGGIr~g~Di~KALa-LGA~~V~iGr~~l~~ 335 (381)
T PRK11197 306 DSGIRNGLDVVRMIA-LGADTVLLGRAFVYA 335 (381)
T ss_pred eCCcCcHHHHHHHHH-cCcCceeEhHHHHHH
Confidence 999999999999998 799999999977643
No 107
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.68 E-value=1.3e-07 Score=85.50 Aligned_cols=102 Identities=27% Similarity=0.311 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Ccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ip 82 (230)
.+.-+-++-+++.+++||.+|==. ..+-++.+.++|++.|.|++....|.. ..++..+.+.++++.+ ++|
T Consensus 210 ~~tW~di~wlr~~~~~PiivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~ 281 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIP 281 (367)
T ss_pred CCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCe
Confidence 334456788888899999999543 246688999999999999876544432 2244567778887765 499
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
|++.|||++..|+.++|. .||++|++||.++.
T Consensus 282 vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 282 VFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred EEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999999998 79999999997664
No 108
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.68 E-value=1.5e-07 Score=78.43 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.+..+.+.|+|++.++...........++..|+.++++++.+++||++.||| +++++.++++ +|+|+|++|+++...
T Consensus 106 e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 106 EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcC
Confidence 44677889999999875533322111122457899999999999999999999 8999999986 899999999999854
Q ss_pred C
Q 026945 117 P 117 (230)
Q Consensus 117 P 117 (230)
+
T Consensus 184 ~ 184 (201)
T PRK07695 184 A 184 (201)
T ss_pred C
Confidence 3
No 109
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.68 E-value=1.9e-07 Score=84.40 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC------CCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~------~~~~~~~~~~i~~ 74 (230)
.+++-+.+.|+.+++.. ++||++|+-.+...+. ++..+.++|+|+|+|.|....... ...|-+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46888999999999988 8999999987665332 233388999999999986432110 0111121223334
Q ss_pred HHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 75 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 75 i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.+.+ .+.++++|++.|+.|+.+++. .|||+|.+||++|--
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~igt~~liA 309 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-LGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-SHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEecchhhhh
Confidence 33321 489999999999999999997 899999999999864
No 110
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.67 E-value=1.2e-07 Score=80.48 Aligned_cols=89 Identities=26% Similarity=0.406 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.++|........ ..+.+.+.++++.+.+++|+.+.|||++.++++++++ .|||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LGVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 3688999999999999999987655421 1246899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||..+.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887653
No 111
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.65 E-value=5.3e-07 Score=75.86 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Ccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ip 82 (230)
+.+.++++.... .++.+.+-+. +. +-++.+.+.|++++.+++++.... +.+.+.+.++++.+ ++|
T Consensus 108 ~~~~~~~~~~~~-~g~~~~v~v~---~~----~e~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~p 174 (217)
T cd00331 108 EQLKELYELARE-LGMEVLVEVH---DE----EELERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVI 174 (217)
T ss_pred HHHHHHHHHHHH-cCCeEEEEEC---CH----HHHHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCE
Confidence 455566665533 3444434443 11 226667788999999998765431 45678899998874 699
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|++.|||.|++++.++++ .|+|||++|++++..++.
T Consensus 175 via~gGI~s~edi~~~~~-~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 175 LVSESGISTPEDVKRLAE-AGADAVLIGESLMRAPDP 210 (217)
T ss_pred EEEEcCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCH
Confidence 999999999999999986 799999999999987654
No 112
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.65 E-value=1.6e-07 Score=80.06 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
...++.++++|++.|-.+|...... .|..+++.|+.+++..++|||+.|||.|++|+.++++ .|||+|++|.++..
T Consensus 134 ~~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~ 209 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAK 209 (248)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcC
Confidence 3567888889999997766554321 3456899999999988999999999999999999997 89999999998874
No 113
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.62 E-value=1.4e-07 Score=80.95 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|++.++|-.-+.... + .+.+++.++++.+.+ +||...|||+|.+++++.++ .||+-|.+|..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g--~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~-~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-N--SVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc-C--CcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHH-CCCCEEEECch
Confidence 4789999999999999999988765421 1 256899999999987 89999999999999999997 89999999999
Q ss_pred hhhCCccccch
Q 026945 113 LLENPALFAGF 123 (230)
Q Consensus 113 ~l~nP~lf~~~ 123 (230)
++.||.+++++
T Consensus 105 a~~~p~~l~~~ 115 (241)
T PRK14114 105 VLEDPSFLKFL 115 (241)
T ss_pred hhCCHHHHHHH
Confidence 99999988877
No 114
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.61 E-value=2.5e-07 Score=78.90 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..+++.++++|++.|-.+|..-.. + .|..+++.++.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 134 ~~~ak~l~~~G~~~vmPlg~pIGs--g-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItk 209 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLGAPIGS--G-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCC--C-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhC
Confidence 456788888999999666554432 1 3456789999999988999999999999999999997 89999999998874
No 115
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.60 E-value=5.8e-07 Score=77.44 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHH-hhcCCceEEEEE------CC---CCCh---HHHH-HHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 3 NLPLVKSLVEKL-ALNLNVPVSCKI------RV---FPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v-~~~~~~pvsvKi------R~---g~~~---~~~~-~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
+|+++.++.+.. .+.+-+-+.+|. ++ ||.. -+.. ++++.+++. +..|.++...++.+ ..++|
T Consensus 114 ~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGt---l~G~d 189 (253)
T TIGR02129 114 DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGL---CKGID 189 (253)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCc---cccCC
Confidence 488888998888 454444455541 11 3432 2466 999999999 99999999887743 34679
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHh-hCCcEEEEehhhhhC
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAESLLEN 116 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-~gadgVmigR~~l~n 116 (230)
.+.++++++.+++|||++||+.|.+|+.++.+. .|..++.+|++++.-
T Consensus 190 lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f 238 (253)
T TIGR02129 190 EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF 238 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence 999999999999999999999999999987432 367789999988753
No 116
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.59 E-value=5.9e-08 Score=82.63 Aligned_cols=89 Identities=24% Similarity=0.464 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|++.++|..-..... + .+.+++.|+++.+.+++||.+.|||+|.+|++++++ .||+.|.+|..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~-g--~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~-~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKE-G--RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLD-AGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCC-T--HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHH-TT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCccc-C--chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHH-hCCCEEEeChH
Confidence 4688999999999999999987654421 1 256899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999887654
No 117
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.57 E-value=7.3e-07 Score=84.58 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
-++.++++.+++.|+..|.+....++. ...++|.+.++.+++.+++|||++||+.+++|+.++++.+|+|+++.|.
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~DG---t~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCDG---QGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeeccccc---cccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 368899999999999999998887764 3346799999999999999999999999999999999988999999883
No 118
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.54 E-value=3.1e-07 Score=78.14 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+++.+.++.+.+.|+.++|+..-+..-. .++.+.+.++++.+.+++||-..|||+|.++++.+++ .|++.|.+|..
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~---g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~-~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA---GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLD-AGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc---CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHH-CCCCEEEEecc
Confidence 4789999999999999999988765531 2366889999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++-.
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999987754
No 119
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.53 E-value=8.2e-07 Score=74.85 Aligned_cols=104 Identities=25% Similarity=0.489 Sum_probs=72.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec--------------------------
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------------------------- 54 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------------------------- 54 (230)
|.||..+.+|+.++ .+||..|.|+|.- --++.|+..|+|+|.=+-
T Consensus 63 MaDp~~i~eim~aV----sIPVMAKvRIGH~-----~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarn 133 (296)
T COG0214 63 MADPKMIEEIMDAV----SIPVMAKVRIGHF-----VEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARN 133 (296)
T ss_pred cCCHHHHHHHHHhc----ccceeeeeecchh-----HHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCc
Confidence 78898877777665 8999999999853 226778888888873210
Q ss_pred ---------------CCCCCcCCC---------------------------------CCcccHHHHHHHHhhCCccEE--
Q 026945 55 ---------------RTRDEKDGK---------------------------------KFRADWNAIKAVKNALRIPVL-- 84 (230)
Q Consensus 55 ---------------rt~~~~~~~---------------------------------~~~~~~~~i~~i~~~~~ipvi-- 84 (230)
||..+. ++ .-.+.++.+.++++.-.+||+
T Consensus 134 LgEAlRRI~EGAaMIRTKGEa-GTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnF 212 (296)
T COG0214 134 LGEALRRISEGAAMIRTKGEA-GTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNF 212 (296)
T ss_pred HHHHHHHHhhhHHHHhcCCCC-CCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEee
Confidence 111100 00 002335566666666567875
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.|||-||.|+.-+++ .|||||.+|.|+..
T Consensus 213 AAGGvATPADAALMM~-LGadGVFVGSGIFK 242 (296)
T COG0214 213 AAGGVATPADAALMMQ-LGADGVFVGSGIFK 242 (296)
T ss_pred cccCcCChhHHHHHHH-hCCCeEEecccccC
Confidence 8899999999998775 89999999998765
No 120
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.53 E-value=3.5e-07 Score=78.76 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.|+.+++.|+++|||..- + .+ +.+.|+++.+.+++||...|||++ ++++++++ .||+.|.+|..++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g--~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------G--PN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------C--CC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 89999999999999999876 1 14 899999999999999999999997 99999997 89999999999999
Q ss_pred C----Cccccchhh
Q 026945 116 N----PALFAGFRT 125 (230)
Q Consensus 116 n----P~lf~~~~~ 125 (230)
| |.++.++..
T Consensus 110 ~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 110 KGKFDLKRLKEIVS 123 (253)
T ss_pred CCCCCHHHHHHHHH
Confidence 8 667766543
No 121
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.50 E-value=4.1e-07 Score=78.69 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++.++|+.+++.|++++||..-.. + .+.+.+.++++++ +++||-..|||++ ++++++|+ .||+-|++|..
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g--~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~-~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----D--DASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLD-AGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----C--CcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHH-cCCCEEEEchH
Confidence 4689999999999999999987644 1 2457899999999 8999999999996 99999997 89999999999
Q ss_pred hhhC----Cccccchhh
Q 026945 113 LLEN----PALFAGFRT 125 (230)
Q Consensus 113 ~l~n----P~lf~~~~~ 125 (230)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 998877643
No 122
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.47 E-value=2.3e-06 Score=75.93 Aligned_cols=98 Identities=9% Similarity=0.139 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+++...++++++++.+ ++++.++.+.+|+.+++.++++.+++.|+.+|. +. . .+.+|+.++++++.+++
T Consensus 160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP--~-~~~d~~~~~~L~~~~~i 229 (316)
T cd03319 160 DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP--V-PAGDDDGLAYLRDKSPL 229 (316)
T ss_pred ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC--C-CCCCHHHHHHHHhcCCC
Confidence 4566778899998877 488999999999999999999999999999983 31 2 24689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++++.+.+++++.++++..++|.|.+-
T Consensus 230 pIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 230 PIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 99999999999999999998899999773
No 123
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=1.5e-06 Score=79.59 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC------cCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------KDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~------~~~~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++.+ +.+|.++-= .+.+-++.+.++|+|.|.+ |-+... ..+ .+.+++..+..+
T Consensus 177 ~~~~~~~~v~~ik~~~p~~~vi~g~V------~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g-~g~p~ltai~~v 248 (404)
T PRK06843 177 HSTRIIELVKKIKTKYPNLDLIAGNI------VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAG-VGVPQITAICDV 248 (404)
T ss_pred CChhHHHHHHHHHhhCCCCcEEEEec------CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecC-CCCChHHHHHHH
Confidence 3466778888888776 566666432 1456788889999999987 422210 011 234566666444
Q ss_pred H---hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 76 K---NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 76 ~---~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+ +..++|||+-|||+++.|+.++|. .|||+||+|+.+.+-..
T Consensus 249 ~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmvGs~~agt~E 293 (404)
T PRK06843 249 YEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMIGNLFAGTKE 293 (404)
T ss_pred HHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcceeeeeec
Confidence 4 456899999999999999999997 89999999998887443
No 124
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=8e-07 Score=75.91 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+....||...|||+|.++++++++ .||+-|.+|..+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECchh
Confidence 68899999999999999998876553 1 255789999998854459999999999999999997 899999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||.+++++.
T Consensus 106 ~~~p~~~~~~~ 116 (232)
T PRK13586 106 FTNFNLFHDIV 116 (232)
T ss_pred hCCHHHHHHHH
Confidence 99999988764
No 125
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.44 E-value=1.2e-06 Score=82.04 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--cCCC--CCcc----cHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDGK--KFRA----DWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--~~~~--~~~~----~~~~i~ 73 (230)
+++.+.++++.+++.. ++||.+- . --+.+-++.|.++|++.|-|....... ...+ .|.+ .++..+
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g----~--~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAG----N--VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEe----c--cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 5678899999999875 7899882 1 224566888889999999976542110 0011 1222 333333
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..++ .++|||+.|||+++.|+.++|. .|||+||+|+-+-+-
T Consensus 323 ~~~~-~~~~viadGgi~~~~di~kala-~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 323 EARK-LGGHVWADGGVRHPRDVALALA-AGASNVMVGSWFAGT 363 (475)
T ss_pred HHHH-cCCcEEEeCCCCCHHHHHHHHH-cCCCEEeechhhccc
Confidence 3344 3899999999999999999997 899999999977654
No 126
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.44 E-value=9.5e-07 Score=75.41 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.+++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+-|.+|..
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~-~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLK-RGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHH-cCCCeEEEcce
Confidence 368899999999999999999887652 2 267899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.| .++.++-.
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 87776543
No 127
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.44 E-value=7.4e-07 Score=84.54 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-----------HHHHHHHHh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 101 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-----------~da~~~l~~ 101 (230)
.+.+++|+.+.+.|+|.|++-.-+...........+++.|+++++.+.+|+.+.|||+|. +++.++|+
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~- 345 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR- 345 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-
Confidence 468999999999999999999887642111112346899999999999999999999997 66899997
Q ss_pred hCCcEEEEehhhhhCC
Q 026945 102 TGCEGVLSAESLLENP 117 (230)
Q Consensus 102 ~gadgVmigR~~l~nP 117 (230)
.|||-|.||..++.||
T Consensus 346 ~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 SGADKISIGSDAVYAA 361 (538)
T ss_pred cCCCEEEEChHHHhCh
Confidence 8999999999999975
No 128
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.43 E-value=2.9e-06 Score=76.00 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-c--ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-R--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~--~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+.+.++.+++.|+|.|.+-|...-. ..+ . .-+..+.++++.+++|||+.|||.+.+++..+|. .|||||++|.
T Consensus 145 s~~~A~~a~~~G~D~iv~qG~eAGG---H~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GT 220 (330)
T PF03060_consen 145 SVREARKAAKAGADAIVAQGPEAGG---HRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGT 220 (330)
T ss_dssp SHHHHHHHHHTT-SEEEEE-TTSSE---E---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESH
T ss_pred CHHHHHHhhhcCCCEEEEeccccCC---CCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCC
Confidence 3566888999999999998865432 222 2 2478889999999999999999999999999997 7999999999
Q ss_pred hhhhCCcc
Q 026945 112 SLLENPAL 119 (230)
Q Consensus 112 ~~l~nP~l 119 (230)
.++.-+.-
T Consensus 221 rFl~t~Es 228 (330)
T PF03060_consen 221 RFLATEES 228 (330)
T ss_dssp HHHTSTTS
T ss_pred eEEecccc
Confidence 99987664
No 129
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.40 E-value=1.3e-06 Score=75.10 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..+.++.+++.|+..++|..-.... + .+.+.+.++++.+.+++||...|||+|.++++.+++ .|||-|++|..+
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~-~Ga~~vvigT~a 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALT-GGRARVNGGTAA 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHH-cCCCEEEECchh
Confidence 56788888999999999998765442 1 256889999999999999999999999999999997 799999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||+++.++.
T Consensus 107 ~~~p~~~~~~~ 117 (243)
T TIGR01919 107 LENPWWAAAVI 117 (243)
T ss_pred hCCHHHHHHHH
Confidence 99999887764
No 130
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.38 E-value=3.1e-06 Score=79.42 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcC-CceEEE-EECCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CCcCCCCCcccHHHHHHHHh-
Q 026945 5 PLVKSLVEKLALNL-NVPVSC-KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR----DEKDGKKFRADWNAIKAVKN- 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsv-KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~----~~~~~~~~~~~~~~i~~i~~- 77 (230)
..+.++++.+++.. +++|.+ -+ .+.+-++.+.++|+|.|-|--.+. ...+.-.+.+++..+.++++
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~ 325 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAA 325 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHH
Confidence 45667777777765 566655 22 245677888899999998642221 11111123568899988877
Q ss_pred --hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 78 --ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 78 --~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
..++|||+-|||.++.|+.++|. .|||+||+|+.+.+-..-.
T Consensus 326 ~~~~~~~via~ggi~~~~~~~~al~-~ga~~v~~g~~~ag~~Esp 369 (479)
T PRK07807 326 ARELGAHVWADGGVRHPRDVALALA-AGASNVMIGSWFAGTYESP 369 (479)
T ss_pred HHhcCCcEEecCCCCCHHHHHHHHH-cCCCeeeccHhhccCccCC
Confidence 46899999999999999999998 8999999999988765543
No 131
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.37 E-value=3.6e-06 Score=79.20 Aligned_cols=104 Identities=23% Similarity=0.238 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC-----CCCcCCCCCcccHHHHHHHHhh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-----RDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt-----~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
..+.+.++.+++.. ++||.++-=. +.+-++.+.++|++.|.|.... ..+.. ..|.++++.+.++++.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v~------t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~-~~g~p~~~~~~~~~~~ 326 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNVA------TAEAARALIEAGADAVKVGIGPGSICTTRIVA-GVGVPQITAIADAAEA 326 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEeccC------CHHHHHHHHHcCCCEEEECCCCCccccceeec-CCCcCHHHHHHHHHHH
Confidence 45667778888776 7888774321 3456788889999999873211 01111 1245677888777664
Q ss_pred ---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 79 ---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 79 ---~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.++|||+.|||+++.|+.+++. .|||.||+|..+-+-
T Consensus 327 ~~~~~~~viadGGi~~~~di~kAla-~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 327 AKKYGIPVIADGGIRYSGDIAKALA-AGASAVMLGSMLAGT 366 (486)
T ss_pred hccCCCeEEEcCCCCCHHHHHHHHH-hCCCEEEECcccccc
Confidence 4799999999999999999998 899999999866554
No 132
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.37 E-value=7.3e-06 Score=71.14 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+++.+.++++..++ .+..+.|-+. +.++ ++.+.++|++.|.+|+|+... + ..+.+...++.+.++
T Consensus 145 ~~~~l~~li~~a~~-lGl~~lvevh---~~~E----~~~A~~~gadiIgin~rdl~~---~--~~d~~~~~~l~~~~p~~ 211 (260)
T PRK00278 145 DDEQLKELLDYAHS-LGLDVLVEVH---DEEE----LERALKLGAPLIGINNRNLKT---F--EVDLETTERLAPLIPSD 211 (260)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC---CHHH----HHHHHHcCCCEEEECCCCccc---c--cCCHHHHHHHHHhCCCC
Confidence 34567777777755 3666655554 2222 245668899999999987642 1 456788888877663
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+|+|+-|||.|++++.++++ .|+|+|.+|++++..++.-.
T Consensus 212 ~~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 212 RLVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGA 251 (260)
T ss_pred CEEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHH
Confidence 69999999999999999997 79999999999998777533
No 133
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.37 E-value=2.3e-06 Score=72.38 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.+....+|...+..|...+-+- .+ +. ..+.+.++++++.+ ++|++..|||+|+++++++++ .|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~S-----G~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YS-----GA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CC-----CC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45678889999999996666654 11 11 25779999999998 999999999999999999986 89999999
Q ss_pred ehhhhhCCccccch
Q 026945 110 AESLLENPALFAGF 123 (230)
Q Consensus 110 gR~~l~nP~lf~~~ 123 (230)
|..+..||.++.++
T Consensus 204 Gsai~~~p~~~~~~ 217 (219)
T cd02812 204 GNIVEEDPNAALET 217 (219)
T ss_pred CchhhCCHHHHHHH
Confidence 99999999887753
No 134
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.37 E-value=4e-06 Score=79.20 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcC-CceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCc-CCCCCcccHHHHHHHH
Q 026945 6 LVKSLVEKLALNL-NVPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEK-DGKKFRADWNAIKAVK 76 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~-~~~~~~~~~~~i~~i~ 76 (230)
.+.++++.+++.. +.+|.++ +- +.+-++.+.++|+|.|.|. +. |+... .+.+....+..+.++.
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~-------t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~ 347 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVV-------TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIA 347 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-------CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHH
Confidence 3457788888766 4666554 22 3456888889999999774 32 21100 1111223455677788
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+..++|||+-|||+++.|+.++|. .||++||+|..+..-.
T Consensus 348 ~~~~vpVIadGGI~~~~di~kAla-~GA~~V~vGs~~~~t~ 387 (505)
T PLN02274 348 AQHGVPVIADGGISNSGHIVKALT-LGASTVMMGSFLAGTT 387 (505)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEchhhcccc
Confidence 888999999999999999999997 8999999999887643
No 135
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.33 E-value=7.5e-06 Score=71.61 Aligned_cols=128 Identities=25% Similarity=0.295 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
||.+-.+=++-+++.++.||.+|==+. .+=|+...++|++.|.|+.-..-|.. ..++..+.+.++.+++ +
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGilt------~eDA~~Ave~G~~GIIVSNHGgRQlD--~vpAtI~~L~Evv~aV~~r 278 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVLT------GEDARKAVEAGVAGIIVSNHGGRQLD--YVPATIEALPEVVKAVEGR 278 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeecc------cHHHHHHHHhCCceEEEeCCCccccC--cccchHHHHHHHHHHhcCc
Confidence 444455567778888899999995431 13367888999999999765444432 2478889999998887 4
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC 154 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~ 154 (230)
+||..-|||++..|+.++|. .||.+|.+||..+ +.-.-.+ + ......+++++.-++++
T Consensus 279 i~V~lDGGVR~G~DVlKALA-LGAk~VfiGRP~v-----~gLA~~G------e----~GV~~vl~iL~~efe~t 336 (363)
T KOG0538|consen 279 IPVFLDGGVRRGTDVLKALA-LGAKGVFIGRPIV-----WGLAAKG------E----AGVKKVLDILRDEFELT 336 (363)
T ss_pred eEEEEecCcccchHHHHHHh-cccceEEecCchh-----eeecccc------c----hhHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8999999999544 4432221 1 34456777777666654
No 136
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.33 E-value=8e-06 Score=76.18 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~~~~~~~~~~~~i~~i~ 76 (230)
-+.+.+.++.+++.. ++||.++-=. +.+-++.+.++|+|+|-|. +. |+.. .+ .|.+....+.+++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~------t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~-~~-~g~p~~~~i~~~~ 320 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVA------TAEQAKALIDAGADGLRVGIGPGSICTTRIV-AG-VGVPQITAVYDVA 320 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHhCCCEEEECCCCCcCCcccee-cC-CCccHHHHHHHHH
Confidence 356778888888874 7888885432 3456788889999999764 21 2211 11 2334566666664
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+ ..++|||+.|||+++.|+.++|. .||+.||+|+.+.+-.+...+
T Consensus 321 ~~~~~~~vpviadGGi~~~~di~kAla-~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 321 EYAAQSGIPVIADGGIRYSGDIVKALA-AGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred HHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhcCCcCCCc
Confidence 4 36899999999999999999997 899999999988776665543
No 137
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.32 E-value=2.6e-06 Score=74.79 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC------------cCCCCCcc----cHHHHHHHHhhC--C
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFRA----DWNAIKAVKNAL--R 80 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~------------~~~~~~~~----~~~~i~~i~~~~--~ 80 (230)
..|+.+|+-..-...+..+++..+.+.++|.+++++-|.+- ..+.+|++ ..+.++++...+ .
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 46999999865555678899999999999999998754321 12333333 356677776665 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
||||++|||.|..|+.+.+. +||..|.++.++.. .|-+|.+++.
T Consensus 332 IpiIG~GGV~SG~DA~Ekir-aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIR-AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred CceEeecCccccHhHHHHHh-cCchHHHHHHHHhhcCchhHHHHHH
Confidence 99999999999999999997 89999999999876 5889988764
No 138
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.32 E-value=1.6e-05 Score=64.92 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
++.+.+.++++.+.+ ++|+.++.+.+. +.+...++++.+.+.|++.|..+.... .+..+++.++++++..
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~------~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG------GGGATVEDVKLMKEAV 169 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC------CCCCCHHHHHHHHHhc
Confidence 577888888888874 899999998654 345667777888899999998765322 1346889999998887
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++.||+.+++.+..++. .||+|+++|
T Consensus 170 ~~~~~v~~~gg~~~~~~~~~~~~-~Ga~g~~~g 201 (201)
T cd00945 170 GGRVGVKAAGGIKTLEDALAAIE-AGADGIGTS 201 (201)
T ss_pred ccCCcEEEECCCCCHHHHHHHHH-hccceeecC
Confidence 679999999999999999997 699999875
No 139
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.30 E-value=5.2e-06 Score=67.72 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+-+..+.+.|+|+|.++....... .+...+..++.++++++..++||++-||| +.+++.++++ .|+|+|++|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~-~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLA-AGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhc
Confidence 345667778999999987643321 11113567899999998889999999999 4789988886 89999999999887
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
++.
T Consensus 184 ~~~ 186 (196)
T cd00564 184 ADD 186 (196)
T ss_pred CCC
Confidence 655
No 140
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.28 E-value=2.2e-06 Score=71.38 Aligned_cols=53 Identities=25% Similarity=0.492 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 69 WNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
++.+++.++.-.+||+ +.|||.||.|+.-+++ .|||||.+|.|.+..++=++.
T Consensus 196 ~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~ 250 (296)
T KOG1606|consen 196 YDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKR 250 (296)
T ss_pred HHHHHHHHHcCCCceEEecccCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHH
Confidence 4555555665568885 8999999999988775 899999999998876665554
No 141
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.28 E-value=8e-06 Score=69.59 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC------CC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF------PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g------~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
||+++.++.+...+ +-+++-.|-| |. .....++++.+++. +..|.+....+... .. ++|
T Consensus 107 ~~~~l~~~~~~~g~---ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt--~~-G~d----- 174 (228)
T PRK04128 107 DLEFLEKVTSEFEG---ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGT--LT-GIE----- 174 (228)
T ss_pred CHHHHHHHHHHcCC---EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhc--cc-CHH-----
Confidence 68888888887732 4455544432 32 22467888889888 89999998777643 22 334
Q ss_pred HHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 74 AVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 74 ~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+.+. .++||+++|||+|.+|+.++.+ .|++||++|++++..
T Consensus 175 ~l~~~~~~~pviasGGv~~~~Dl~~l~~-~g~~gvivg~al~~g 217 (228)
T PRK04128 175 EIERFWGDEEFIYAGGVSSAEDVKKLAE-IGFSGVIIGKALYEG 217 (228)
T ss_pred HHHHhcCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEEhhhhcC
Confidence 22232 5799999999999999999887 799999999998765
No 142
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.26 E-value=8e-06 Score=77.01 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCcCCCCCcccHHHHHHHH-
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEKDGKKFRADWNAIKAVK- 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~~~~~~~~~~~~i~~i~- 76 (230)
..+.+.++.+++.. ++||.++-= -+.+-++.+.++|+|+|.+. +. |+... ..|.+....+..++
T Consensus 267 ~~~~~~i~~ik~~~~~~~v~aG~V------~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~--~~g~p~~~ai~~~~~ 338 (495)
T PTZ00314 267 IYQIDMIKKLKSNYPHVDIIAGNV------VTADQAKNLIDAGADGLRIGMGSGSICITQEVC--AVGRPQASAVYHVAR 338 (495)
T ss_pred hHHHHHHHHHHhhCCCceEEECCc------CCHHHHHHHHHcCCCEEEECCcCCcccccchhc--cCCCChHHHHHHHHH
Confidence 44567888888875 577777321 13456788889999999863 21 11111 12334555555444
Q ss_pred --hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 --NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 --~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+..++|||+.|||+++.|+.+++. .|||+||+|+.+.+--
T Consensus 339 ~~~~~~v~vIadGGi~~~~di~kAla-~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 339 YARERGVPCIADGGIKNSGDICKALA-LGADCVMLGSLLAGTE 380 (495)
T ss_pred HHhhcCCeEEecCCCCCHHHHHHHHH-cCCCEEEECchhcccc
Confidence 446899999999999999999997 8999999999876643
No 143
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.25 E-value=8.1e-06 Score=74.15 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-CcCCC--CCcccHHHHHHHHh-------hC---CccE
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGK--KFRADWNAIKAVKN-------AL---RIPV 83 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-~~~~~--~~~~~~~~i~~i~~-------~~---~ipv 83 (230)
..++||.+.-- .+ .+.++.+.++|+|.|.+ ++... ..... .+.+....+..+.. .. .+||
T Consensus 186 ~~~IPVI~G~V--~t----~e~A~~~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpV 258 (369)
T TIGR01304 186 ELDVPVIAGGV--ND----YTTALHLMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHV 258 (369)
T ss_pred HCCCCEEEeCC--CC----HHHHHHHHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 34789876211 12 34456666799999984 32211 10011 11233445554432 23 3999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|+.|||.+..|+.+++. .|||+||+|+.++.--+.
T Consensus 259 IAdGGI~tg~di~kAlA-lGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 259 IADGGIETSGDLVKAIA-CGADAVVLGSPLARAAEA 293 (369)
T ss_pred EEeCCCCCHHHHHHHHH-cCCCEeeeHHHHHhhhcC
Confidence 99999999999999997 899999999999875553
No 144
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.25 E-value=2.5e-05 Score=67.67 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecC-------------------------
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGR------------------------- 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~r------------------------- 55 (230)
+.+.+.++++++++. .++|+..=+-..+ -.-...+|++.+.++|++.+.+|.-
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECC
Confidence 356778899999876 6888652111111 0012356777777777777777631
Q ss_pred -CCCCc-----------------CCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 56 -TRDEK-----------------DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 56 -t~~~~-----------------~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|...+ .+++| +...+.++++++..+.||++.|||+|++++.++.+ .|||||.+|+
T Consensus 150 ~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~-~GADgvVvGS 228 (256)
T TIGR00262 150 NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAID-AGADGVIVGS 228 (256)
T ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECH
Confidence 10000 12222 12467889999988999999999999999999886 8999999999
Q ss_pred hhh
Q 026945 112 SLL 114 (230)
Q Consensus 112 ~~l 114 (230)
+++
T Consensus 229 aiv 231 (256)
T TIGR00262 229 AIV 231 (256)
T ss_pred HHH
Confidence 885
No 145
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.25 E-value=2.4e-05 Score=70.18 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC----cccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF----RADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~----~~~~~~i~~i~~~~ 79 (230)
++...+.+..+++..++||.++++. .+.++..++++.++++|+++|.+|.--.....+..+ ..-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 3555667777777778999999976 455788899999999999999997521111111111 12367889999999
Q ss_pred CccEEEc--CCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~n--GgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999965 566677888888888999998663
No 146
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.23 E-value=1.8e-05 Score=70.54 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------cCCCCCcCCCCCcccHHHHHHHHh
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
-+.+.+.++.+++.+.-+..+|=.+. +.+-++.|.++|+|.|-|. ..|+. ..+ .|-+.+..+..+++
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~-----T~e~a~~Li~aGAD~ikVgiGpGSicttR~-~~G-vg~pqltAv~~~a~ 206 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVV-----TGEMVEELILSGADIVKVGIGPGSVCTTRT-KTG-VGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeccc-----CHHHHHHHHHcCCCEEEEcccCCCcccCce-eCC-CCcCHHHHHHHHHH
Confidence 34566777778777643444544432 2356778889999999876 22332 222 23356777777766
Q ss_pred hC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 78 AL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 78 ~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.. ++|||+-|||++..|+.++|. .|||+||+|.-+-+
T Consensus 207 aa~~~~v~VIaDGGIr~~gDI~KALA-~GAd~VMlG~llAG 246 (343)
T TIGR01305 207 AAHGLKGHIISDGGCTCPGDVAKAFG-AGADFVMLGGMFAG 246 (343)
T ss_pred HhccCCCeEEEcCCcCchhHHHHHHH-cCCCEEEECHhhhC
Confidence 53 689999999999999999998 89999999944433
No 147
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.22 E-value=2.6e-05 Score=67.51 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.-.++++++++.+ ++++.+..+-+|+.+++.++++.+++.|+++|.- .. .+.+++..+++++.++
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe---------P~-~~~d~~~~~~l~~~~~ 180 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQ---------PL-PADDLEGRAALARATD 180 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC---------CC-CcccHHHHHHHHhhCC
Confidence 4566778899999877 5788888888899999999999999999999852 11 1357899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+++++.++.++.++++...+|.|++
T Consensus 181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 181 TPIMADESAFTPHDAFRELALGAADAVNI 209 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998788999876
No 148
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.22 E-value=1e-05 Score=73.55 Aligned_cols=95 Identities=23% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC---C--CCcccHHHHHHHHhh-------C---Ccc
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG---K--KFRADWNAIKAVKNA-------L---RIP 82 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~---~--~~~~~~~~i~~i~~~-------~---~ip 82 (230)
.++||.++- + . +.+-++.+.++|+|.|.+ ++....-.. . .+-+....+.++++. . ++|
T Consensus 186 ~~ipVIaG~-V-~----t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vp 258 (368)
T PRK08649 186 LDVPVIVGG-C-V----TYTTALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVH 258 (368)
T ss_pred CCCCEEEeC-C-C----CHHHHHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCe
Confidence 478887622 1 1 245567777899999977 443210000 0 112334445554321 1 599
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
||+.|||++..|+.++|. .|||+||+|+.+..-..-.
T Consensus 259 VIAdGGI~~~~diakAla-lGAd~Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 259 VIADGGIGTSGDIAKAIA-CGADAVMLGSPLARAAEAP 295 (368)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCeecccchhcccccCC
Confidence 999999999999999997 8999999999988855433
No 149
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.22 E-value=6.2e-06 Score=69.38 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
..+-+...++.|+|+|.+.+-.........++.-|+.++.+++..++|+++-||| +++.+.++++ +|++||.+-|+++
T Consensus 113 ~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga~gVAvvsai~ 190 (211)
T COG0352 113 DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGADGVAVVSAIT 190 (211)
T ss_pred CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCCCeEEehhHhh
Confidence 3466777888999999998865544322235668999999999989999999999 6899999886 9999999999999
Q ss_pred hCCccccc
Q 026945 115 ENPALFAG 122 (230)
Q Consensus 115 ~nP~lf~~ 122 (230)
.+++....
T Consensus 191 ~a~d~~~a 198 (211)
T COG0352 191 SAADPAAA 198 (211)
T ss_pred cCCCHHHH
Confidence 87765543
No 150
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.19 E-value=1.6e-05 Score=66.72 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.++...++...+..|++.|++..-+.. ..+.+.+.++++++.+++|++..|||+|+++++++++ .|||+|.+|
T Consensus 133 ~e~~~~~a~aa~~~G~~~i~Le~~sGa-----~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~-~GAD~VVVG 205 (205)
T TIGR01769 133 PEIAAAYCLAAKYFGMKWVYLEAGSGA-----SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVL-AGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCC-----CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHH-cCCCEEEeC
Confidence 467888999999999999999553322 2245789999999999999999999999999999886 789999987
No 151
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.17 E-value=3.6e-05 Score=65.26 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.+.+-+.++++.+ .|+.+|+=+ ..+.++....++.+.++|+|+|--+.... .+++..+.++.+++.+
T Consensus 104 ~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~------~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 104 DWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS------TGGATVEDVKLMRETV 176 (221)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHh
Confidence 4666777777777755 467788733 23556778899999999999887543221 2357788888888876
Q ss_pred C--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 80 R--IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 80 ~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+ ++|.++|||+|++++.++++ .||+.+-..+|
T Consensus 177 ~~~~~IKasGGIrt~~~a~~~i~-aGA~riGtS~~ 210 (221)
T PRK00507 177 GPRVGVKASGGIRTLEDALAMIE-AGATRLGTSAG 210 (221)
T ss_pred CCCceEEeeCCcCCHHHHHHHHH-cCcceEccCcH
Confidence 4 89999999999999999997 89998766554
No 152
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.17 E-value=1.4e-05 Score=66.49 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+....+.|+|+|.+++...... .+..+...++.++++++..+ +||++-||| +.+++.++++ .|+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~-~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE-AGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEeHHhhcC
Confidence 4555678999999886543321 11222334899999999887 999999999 6899998887 899999999988765
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
+.
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 44
No 153
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.17 E-value=2.2e-05 Score=74.13 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecC----CCCCcCCCCCcccHHHHHHHHhh
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGR----TRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~r----t~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.++.+++.++.++.|+---- -+.+-++.+.++|+|+|.| |+. |+.+. -.|.+.+..+.+++++
T Consensus 268 ~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~--~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 268 EWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLAEAGADFVKVGIGGGSICITREQK--GIGRGQATALIEVAKA 341 (502)
T ss_pred HHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHHHcCCCEEEECCCCCcCccccccc--CCCccHHHHHHHHHHH
Confidence 3456777888776654444443211 1345577788899999987 332 33332 1345567777777664
Q ss_pred C-------C--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 79 L-------R--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 79 ~-------~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
. + +|||+-|||++..|+.++|. .|||+||+||.+-+--
T Consensus 342 ~~~~~~~~g~~~~viadgGir~~gdi~KAla-~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 342 RDEYFEETGVYIPICSDGGIVYDYHMTLALA-MGADFIMLGRYFARFD 388 (502)
T ss_pred HHHHHhhcCCcceEEEcCCCCchhHHHHHHH-cCCCeeeeChhhhccc
Confidence 3 4 89999999999999999998 8999999999887743
No 154
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.16 E-value=8.1e-06 Score=69.23 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHh-hCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-~gadgVmigR 111 (230)
.+..+.|+.+.+.|++.|+|-.-.... + .+.+.+.++++.+. +|+...|||+|.+|+++++.. .+|+-|.+|.
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~--~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--G--LGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--C--CcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 467899999999999999998876642 2 25689999999887 499999999999999998652 3699999999
Q ss_pred hhhhCCccccchh
Q 026945 112 SLLENPALFAGFR 124 (230)
Q Consensus 112 ~~l~nP~lf~~~~ 124 (230)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999887653
No 155
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.15 E-value=3.1e-05 Score=67.38 Aligned_cols=101 Identities=13% Similarity=0.235 Sum_probs=72.0
Q ss_pred HHHHHHHHhhc---CCceEEEEEC-------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 7 VKSLVEKLALN---LNVPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 7 ~~eiv~~v~~~---~~~pvsvKiR-------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
+.+.+.++.+. .++|+.+=.. ...+.+.....++...+.|+|+|-.+ +. .+.+.++++.
T Consensus 124 ~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~--~~~~~l~~~~ 192 (267)
T PRK07226 124 MLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YT--GDPESFREVV 192 (267)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CC--CCHHHHHHHH
Confidence 44444444433 4788776321 11223344556788889999999543 22 2568888888
Q ss_pred hhCCccEEEcCCCC--CHHHHHHHHH---hhCCcEEEEehhhhhCCc
Q 026945 77 NALRIPVLANGNVR--HMEDVQKCLE---ETGCEGVLSAESLLENPA 118 (230)
Q Consensus 77 ~~~~ipvi~nGgI~--s~~da~~~l~---~~gadgVmigR~~l~nP~ 118 (230)
+..++||++.|||+ |.+++.+++. +.||+|+.+||.++..|+
T Consensus 193 ~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 193 EGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 87889999999999 8888887762 489999999999998766
No 156
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=72.01 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCC--CCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+...++.+++.|+|.|.+++-..-...+. ....-...+.++++.++ ||||+.|||.+.+++..+|. .|||||.+|.
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT 214 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGT 214 (336)
T ss_pred CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhh
Confidence 46788999999999999988654322111 01223677899999999 99999999999999999998 8999999999
Q ss_pred hhhhCCc
Q 026945 112 SLLENPA 118 (230)
Q Consensus 112 ~~l~nP~ 118 (230)
.++.-..
T Consensus 215 ~Fl~t~E 221 (336)
T COG2070 215 RFLATKE 221 (336)
T ss_pred hhhcccc
Confidence 9988654
No 157
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.14 E-value=4.9e-05 Score=64.62 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=66.1
Q ss_pred cCCceEEEEECC-CC------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 17 NLNVPVSCKIRV-FP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 17 ~~~~pvsvKiR~-g~------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
..++|+.+-... |. +.+.....++...+.|+|+|-+.. +.+.+.++++++.+++||++.||+
T Consensus 120 ~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~ 188 (235)
T cd00958 120 KYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGP 188 (235)
T ss_pred HcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCC
Confidence 357888775543 11 122333347778899999999831 126788999999999999998987
Q ss_pred --CCHHH----HHHHHHhhCCcEEEEehhhhhCCc
Q 026945 90 --RHMED----VQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 90 --~s~~d----a~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|.++ +.++++ .|++||.+||.++..|+
T Consensus 189 ~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 189 KKDSEEEFLKMVYDAME-AGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCCCHHHHHHHHHHHHH-cCCcEEEechhhhcCCC
Confidence 67766 566665 89999999999997775
No 158
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.14 E-value=3.9e-06 Score=75.90 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+|-.+.|-+..+++.+..|+.+|= .. ..+=+..+-+.|++.|.++.....|. .-+.+..+.+.++++.++
T Consensus 202 ~P~i~ked~~~i~~~~~~~lv~kG---V~---~~~D~~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 202 VPVISKEDGAGISKEWAGPLVLKG---IL---APEDAAGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred CCcccHHHHhHHHHhcCCcHHHhC---CC---CHHHHHhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCCC
Confidence 344444445555554444444331 10 11225666788999999976443332 224566788999999886
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||++.|||+|..|+.+++. .|||+|++||.++..
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlA-LGA~~v~igrp~L~~ 308 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALA-LGADAVGIGRPFLYG 308 (360)
T ss_pred eEEEecCCCCCHHHHHHHHH-hCCchhhhhHHHHHH
Confidence 99999999999999999998 899999999976653
No 159
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.12 E-value=4.4e-05 Score=66.39 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCCh---HHHHHHHHHHHHcCCCEEEEecC------------------------
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR------------------------ 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~r------------------------ 55 (230)
+.+.+.++++++++..++|+.+ -..++. -...+|++.+.++|++.+.+|.-
T Consensus 75 ~~~~~~~~~~~~r~~~~~p~vl--m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 75 NLNKILSILSEVNGEIKAPIVI--FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCEEE--EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3567788999998777888642 222221 12345666777777777777631
Q ss_pred -C-CCCc-----------------CCCCCcc------cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 56 -T-RDEK-----------------DGKKFRA------DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 56 -t-~~~~-----------------~~~~~~~------~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+ ...+ .+.+|.- --+.++++++.++.||...+||+|++++.++.+ .|||||.+|
T Consensus 153 PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~-~GADGvVVG 231 (263)
T CHL00200 153 PTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKG-WNINGIVIG 231 (263)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHh-cCCCEEEEC
Confidence 1 0000 1222221 135678888888999999999999999999775 899999999
Q ss_pred hhhhh
Q 026945 111 ESLLE 115 (230)
Q Consensus 111 R~~l~ 115 (230)
.+++.
T Consensus 232 Salv~ 236 (263)
T CHL00200 232 SACVQ 236 (263)
T ss_pred HHHHH
Confidence 99965
No 160
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.12 E-value=2e-05 Score=66.74 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+....+....+ .|-..+-+-... ++..+.+++.++++++.+ ++|++..|||+|.++++++++ .|||+|++|.
T Consensus 136 ~~aa~~~lA~~~~g~~~vYlE~gs-----~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGs 209 (223)
T TIGR01768 136 DLAAYAAMAEEMLGMPIIYLEAGS-----GAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAE-AGADTIVTGN 209 (223)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecC-----CCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHH-cCCCEEEECc
Confidence 33333333333 566666554221 122356789999999998 899999999999999999886 7999999999
Q ss_pred hhhhCCccccc
Q 026945 112 SLLENPALFAG 122 (230)
Q Consensus 112 ~~l~nP~lf~~ 122 (230)
.+..||..+.+
T Consensus 210 ~~~~dp~~~~~ 220 (223)
T TIGR01768 210 VIEEDVDKALE 220 (223)
T ss_pred HHhhCHHHHHH
Confidence 99999887664
No 161
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=4.2e-05 Score=63.57 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEE--EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+....++|+|+| |++|-|.... ....+|++.++++.+ .+.+||+-|.++||+.+.++++ .||++|.+|. +
T Consensus 137 ~ee~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga~aVvVGs-A 211 (229)
T COG3010 137 FEEGLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGADAVVVGS-A 211 (229)
T ss_pred HHHHHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCCeEEEECc-c
Confidence 344556678999998 7778776432 233679999999988 7999999999999999999997 8999999995 6
Q ss_pred hhCCcc
Q 026945 114 LENPAL 119 (230)
Q Consensus 114 l~nP~l 119 (230)
+.+|.-
T Consensus 212 ITRp~~ 217 (229)
T COG3010 212 ITRPEE 217 (229)
T ss_pred cCCHHH
Confidence 666653
No 162
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.08 E-value=7e-05 Score=64.79 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=70.4
Q ss_pred HHHHHHhhc---CCceEEEEEC-----CCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 9 SLVEKLALN---LNVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 9 eiv~~v~~~---~~~pvsvKiR-----~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+.+.++++. .++|+.+..- ++. +.+.....++...++|+|+|.+. + +.+.+.++++.+..
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~ 191 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGC 191 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhC
Confidence 455555543 4788877432 221 22333444688889999999963 1 13678899999888
Q ss_pred CccEEEcCCCC--CHHHHHHHHH---hhCCcEEEEehhhhhCCcc
Q 026945 80 RIPVLANGNVR--HMEDVQKCLE---ETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 ~ipvi~nGgI~--s~~da~~~l~---~~gadgVmigR~~l~nP~l 119 (230)
++||++.|||+ |.+++.+.++ +.|++|+.+||.++..++.
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 99999999999 6666554442 3899999999999977663
No 163
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.08 E-value=0.0001 Score=61.32 Aligned_cols=103 Identities=16% Similarity=0.314 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhcCCceEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccE
Q 026945 6 LVKSLVEKLALNLNVPVSCKI-RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKi-R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipv 83 (230)
.+.++++.+++ .++++.+-+ .. ....+-++.+.+.|++++.+++.+..+.. ++..++.++++++.++ .++
T Consensus 90 ~~~~~i~~~~~-~g~~~~~~~~~~----~t~~~~~~~~~~~g~d~v~~~pg~~~~~~---~~~~~~~i~~l~~~~~~~~i 161 (206)
T TIGR03128 90 TIKGAVKAAKK-HGKEVQVDLINV----KDKVKRAKELKELGADYIGVHTGLDEQAK---GQNPFEDLQTILKLVKEARV 161 (206)
T ss_pred HHHHHHHHHHH-cCCEEEEEecCC----CChHHHHHHHHHcCCCEEEEcCCcCcccC---CCCCHHHHHHHHHhcCCCcE
Confidence 45677777765 478888764 32 22445566667789999999865444321 2345678888887765 455
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+.||| +++.+.++++ .|+|+|.+||+++..+.
T Consensus 162 ~v~GGI-~~~n~~~~~~-~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 162 AVAGGI-NLDTIPDVIK-LGPDIVIVGGAITKAAD 194 (206)
T ss_pred EEECCc-CHHHHHHHHH-cCCCEEEEeehhcCCCC
Confidence 568999 7899999886 89999999999876554
No 164
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.07 E-value=7.3e-05 Score=69.30 Aligned_cols=103 Identities=18% Similarity=0.312 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
+.++++.+++ .++++.+-+ ++. ....+.++.+.+.|+++|.++.....+. .++..++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~-~s~--~t~~e~~~~a~~~GaD~I~~~pg~~~~~---~~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL-INV--PDPVKRAVELEELGVDYINVHVGIDQQM---LGKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe-cCC--CCHHHHHHHHHhcCCCEEEEEeccchhh---cCCChHHHHHHHHhhCCCcEEEE
Confidence 4566666665 466666542 111 2234557888889999999886432221 12334688999998889999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||| +.+.+.++++ .|+|+|.+||+++..+.
T Consensus 169 GGI-~~~n~~~~l~-aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 169 GGL-DAETAAKAVA-AGADIVIVGGNIIKSAD 198 (430)
T ss_pred CCC-CHHHHHHHHH-cCCCEEEEChHHcCCCC
Confidence 999 6889988887 89999999999987654
No 165
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.06 E-value=4.2e-05 Score=64.88 Aligned_cols=104 Identities=15% Similarity=0.347 Sum_probs=74.1
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
++++++++. +++|+.|-+=+ .+...+++.+.++|++.|++|.-....-
T Consensus 47 ~~i~~i~~~~~~~~~dvHLMv----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i 122 (220)
T PRK08883 47 PICKALRDYGITAPIDVHLMV----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHL 122 (220)
T ss_pred HHHHHHHHhCCCCCEEEEecc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence 567888776 57888877654 3456788999999999999996421100
Q ss_pred ----------------CCCCC----cccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKF----RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~----~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+++.| +...+.++++++.. ++||.+-|||+ .+.+.++.+ .|||++.+|+++..
T Consensus 123 ~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~-aGAd~vVvGSaIf~ 200 (220)
T PRK08883 123 EYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE-AGADMFVAGSAIFG 200 (220)
T ss_pred HHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHhC
Confidence 11212 12345677776654 38999999997 899988886 89999999999876
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 201 ~~d 203 (220)
T PRK08883 201 QPD 203 (220)
T ss_pred CCC
Confidence 444
No 166
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.06 E-value=1.8e-05 Score=71.28 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~ 76 (230)
-+.+.+.++.+++... +||.+-== -+.+-++.|.++|+|.|-|--. |+... + .|-+.+..+.+++
T Consensus 133 s~~~~~~ik~ik~~~~~~~viaGNV------~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~-G-vG~PQ~tAv~~~a 204 (352)
T PF00478_consen 133 SEHVIDMIKKIKKKFPDVPVIAGNV------VTYEGAKDLIDAGADAVKVGIGPGSICTTREVT-G-VGVPQLTAVYECA 204 (352)
T ss_dssp SHHHHHHHHHHHHHSTTSEEEEEEE-------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHH-S-BSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEeccc------CCHHHHHHHHHcCCCEEEEeccCCccccccccc-c-cCCcHHHHHHHHH
Confidence 3556677888877764 77765421 2356778899999999998532 22211 1 2344667776665
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+ ..++|||+-|||++.-|+.++|. .|||.||+|+-+-+--
T Consensus 205 ~~a~~~~v~iIADGGi~~sGDi~KAla-~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 205 EAARDYGVPIIADGGIRTSGDIVKALA-AGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHCTTSEEEEESS-SSHHHHHHHHH-TT-SEEEESTTTTTBT
T ss_pred HHhhhccCceeecCCcCcccceeeeee-ecccceeechhhccCc
Confidence 5 35799999999999999999997 8999999999766543
No 167
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.04 E-value=3.5e-05 Score=69.51 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
-+....+.|+|+|.+.+...........+..++.++.+++..++||++-||| +++++.++++ +|++||.++++++..+
T Consensus 252 e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~-~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 252 EMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQ-AGAKRVAVVRAIMGAE 329 (347)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCcEEEEeHHHhCCC
Confidence 3455567899999998765432211123567899999999999999999999 4899988775 8999999999998754
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
.
T Consensus 330 d 330 (347)
T PRK02615 330 D 330 (347)
T ss_pred C
Confidence 4
No 168
>PLN02591 tryptophan synthase
Probab=98.01 E-value=0.00015 Score=62.70 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+.++++++..++||+..-||+|++++.++++ .|||||.+|.+++.
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~-~GADGvIVGSalVk 223 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAG-WGADGVIVGSAMVK 223 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 34588899988999999999999999999776 89999999999873
No 169
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.00 E-value=5.7e-05 Score=67.36 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHHHh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.++|+.+++.. +++|.+-= --+.+-++.|.++|+|.+-|-- -|+... + .|-+.+..+.++++
T Consensus 136 ~~~i~~ik~ik~~~P~~~vIaGN------V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vt-G-vG~PQltAV~~~a~ 207 (346)
T PRK05096 136 EHFVQFVAKAREAWPDKTICAGN------VVTGEMVEELILSGADIVKVGIGPGSVCTTRVKT-G-VGYPQLSAVIECAD 207 (346)
T ss_pred HHHHHHHHHHHHhCCCCcEEEec------ccCHHHHHHHHHcCCCEEEEcccCCccccCcccc-c-cChhHHHHHHHHHH
Confidence 45566677776654 44544321 1244678889999999997631 233221 1 23456666666654
Q ss_pred ---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 78 ---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 78 ---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..++|||+-|||++.-|+.++|. .|||.||+|+-+-+-..
T Consensus 208 ~a~~~gvpiIADGGi~~sGDI~KAla-aGAd~VMlGsllAGt~E 250 (346)
T PRK05096 208 AAHGLGGQIVSDGGCTVPGDVAKAFG-GGADFVMLGGMLAGHEE 250 (346)
T ss_pred HHHHcCCCEEecCCcccccHHHHHHH-cCCCEEEeChhhcCccc
Confidence 45899999999999999999997 89999999987766543
No 170
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.99 E-value=5.5e-05 Score=62.39 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=57.9
Q ss_pred HHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
..+.+.|+|++.+........ ....++..++.++++++.. ++||++.||| +.+++.++++ +|++||++|++++..+
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 456678999999866533221 1122345789999998765 5999999999 5899998885 8999999999988654
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 3
No 171
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.97 E-value=8.6e-05 Score=63.39 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=55.7
Q ss_pred cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc-cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 45 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 45 ~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i-pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|-..+.+-.... ...+.+.+.++++++.+++ ||++.|||+|++++.+++. .|||+|.+|..+..||.
T Consensus 153 ~g~~~vYle~gs~-----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 153 LGMPIVYLEYGGG-----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred cCCCeEEEECCCC-----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 4655555443221 2235688999999999998 9999999999999999887 79999999999999988
No 172
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.97 E-value=5.7e-05 Score=64.10 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+...++.|+|+|.+.+-....+. ...+...+.++++++.+++||++-||| +.+++.++++ +|++||.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~-~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKP-EAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-TGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCC-CCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-hCCCEEEEhHHhhCCCC
Confidence 44456789999999876322221 123456788888888899999999999 8999999986 89999999999986554
No 173
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.96 E-value=3.9e-05 Score=62.78 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
-++.+.+.|+|++.+.+-..........+..|+.+.++++..++||++-||| +++++.++.+ +|++||.+-|++
T Consensus 107 e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 107 EAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 3777788999999999875443222225668999999999999999999999 6889988775 999999988763
No 174
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.96 E-value=0.00015 Score=62.35 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCceEE--EEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC---CC------------------------
Q 026945 9 SLVEKLALNLNVPVS--CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR---DE------------------------ 59 (230)
Q Consensus 9 eiv~~v~~~~~~pvs--vKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~---~~------------------------ 59 (230)
++++++++.+++|+. +|.... ..+..++++.+.++|++.+++|.-.. +.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~--~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDY--VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchh--hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 789999988889974 555541 34566788888888999888884210 00
Q ss_pred --c--------CC--------CCCc---cc-HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 60 --K--------DG--------KKFR---AD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 60 --~--------~~--------~~~~---~~-~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
. .+ ..|. .+ .+.++++++.. +.||+.-|||++++++.++++ .|||+|.+|++++.
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 0 00 0011 11 34677777776 489999999999999999886 89999999998875
No 175
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.94 E-value=5e-05 Score=65.08 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|++|+++||..|-.-+-.-. ...|-.+...++.+.+..++||+.-+||.+++|+..+++ .|||||+++.|...
T Consensus 149 v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nSaIak 223 (267)
T CHL00162 149 MLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNTAVAQ 223 (267)
T ss_pred HHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecceeec
Confidence 3456667777766654332111 123456889999999999999999999999999999997 89999999998874
No 176
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.94 E-value=8.8e-05 Score=66.80 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++.+ ++++.+...-+|+.+++.++++.+++.|+.+|. | + . ++.+++..+.+++.+++
T Consensus 172 ~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~i 241 (357)
T cd03316 172 LREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFE-------E-P-V-PPDDLEGLARLRQATSV 241 (357)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEc-------C-C-C-CccCHHHHHHHHHhCCC
Confidence 577889999999987 578999888889999999999999999988875 2 1 1 13378899999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++.+.+.+++++.++++...+|.|.+
T Consensus 242 pi~~dE~~~~~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 242 PIAAGENLYTRWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred CEEeccccccHHHHHHHHHhCCCCEEec
Confidence 9999999999999999998778998876
No 177
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.91 E-value=0.0003 Score=58.13 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCCceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.+.++++.+++. ++++.+= +.. ....+..+ +...|++++.++. ++... .+ .+...+.++++++..++|
T Consensus 90 ~~~~~~i~~~~~~-g~~~~v~~~~~----~t~~e~~~-~~~~~~d~v~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~~~ 160 (202)
T cd04726 90 STIKKAVKAAKKY-GKEVQVDLIGV----EDPEKRAK-LLKLGVDIVILHRGIDAQA-AG--GWWPEDDLKKVKKLLGVK 160 (202)
T ss_pred HHHHHHHHHHHHc-CCeEEEEEeCC----CCHHHHHH-HHHCCCCEEEEcCcccccc-cC--CCCCHHHHHHHHhhcCCC
Confidence 4466777777653 5655543 222 12234444 6778999999863 33221 11 234568888888767899
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++.|||+ ++++.++++ .|+|+|.+|+++...+.
T Consensus 161 i~~~GGI~-~~~i~~~~~-~Gad~vvvGsai~~~~d 194 (202)
T cd04726 161 VAVAGGIT-PDTLPEFKK-AGADIVIVGRAITGAAD 194 (202)
T ss_pred EEEECCcC-HHHHHHHHh-cCCCEEEEeehhcCCCC
Confidence 99999995 999999997 89999999999876544
No 178
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.91 E-value=0.0001 Score=61.43 Aligned_cols=104 Identities=17% Similarity=0.305 Sum_probs=71.0
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
.++.+++..+.++...+.+... ...+. ......|+|++.+...+.....+...+.+|+.+++++ .++|+++.|||
T Consensus 87 ~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI 161 (203)
T cd00405 87 YCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL 161 (203)
T ss_pred HHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC
Confidence 3455555445566544554322 11222 2334578999988776654322233357999998887 68999999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+++.+.++++..+++||-+++|+...|-.
T Consensus 162 -~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 162 -TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred -ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 89999999985449999999998887765
No 179
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.89 E-value=0.00026 Score=60.80 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhhcCCceEEE--EECCCCChHHHHHHHHHHHHcCCCEEEEec--------------------------C
Q 026945 4 LPLVKSLVEKLALNLNVPVSC--KIRVFPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------R 55 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsv--KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~--------------------------r 55 (230)
.+...++++.+++..++|+.+ +...-.. .....|++.+.++|++.++++. -
T Consensus 61 ~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 61 LKDVLELVKEIRKKNTIPIVLMGYYNPILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCHHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 456788999999877888755 4332110 0124567777777777777721 1
Q ss_pred CCCCc-----------------CCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 56 TRDEK-----------------DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 56 t~~~~-----------------~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
|...+ .+..| +...+.++++++..++||+..|||++.+++.++.+ . ||+|.+|.+
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~-~-ADgvVvGSa 217 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAK-Y-ADGVIVGSA 217 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHc-c-CCEEEECHH
Confidence 11000 01111 11246788888888999999999999999999886 6 999999987
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 218 iv~ 220 (242)
T cd04724 218 LVK 220 (242)
T ss_pred HHH
Confidence 763
No 180
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.88 E-value=7.6e-05 Score=63.30 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|++|+++||..+-.-+-.-. ...|-.+...++.+.+..++|||.-+||.++.|+..+++ .|||+|++..+.-.
T Consensus 135 v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~daVLvNTAiA~ 209 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLVNTAIAK 209 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SEEEESHHHHT
T ss_pred HHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCceeehhhHHhc
Confidence 4566777777777765442211 123456788999999999999999999999999999997 89999999887654
No 181
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.88 E-value=0.0001 Score=61.18 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCceEE--EEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc------------------------
Q 026945 7 VKSLVEKLALNLNVPVS--CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK------------------------ 60 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvs--vKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~------------------------ 60 (230)
-.++++++++..+.|+. ++++ + ..++++.+.++|++.|++|+......
T Consensus 44 ~~~~v~~i~~~~~~~v~v~lm~~---~---~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~ 117 (210)
T TIGR01163 44 GPPVLEALRKYTDLPIDVHLMVE---N---PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPL 117 (210)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeC---C---HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 34567777765566653 4444 1 34667777888888888886421000
Q ss_pred -------------------CCCCC-cccHHH---HHHHHhhCC-----ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 61 -------------------DGKKF-RADWNA---IKAVKNALR-----IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 61 -------------------~~~~~-~~~~~~---i~~i~~~~~-----ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.++ ..+|.. ++++++.++ +|+++.|||+ ++++.++++ +|+|++.+|++
T Consensus 118 e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsa 195 (210)
T TIGR01163 118 EFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSA 195 (210)
T ss_pred HHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChH
Confidence 01111 123433 444544433 7999999995 799998885 89999999999
Q ss_pred hhhCCcc
Q 026945 113 LLENPAL 119 (230)
Q Consensus 113 ~l~nP~l 119 (230)
++..|+.
T Consensus 196 i~~~~d~ 202 (210)
T TIGR01163 196 IFGADDY 202 (210)
T ss_pred HhCCCCH
Confidence 9877653
No 182
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.83 E-value=0.00053 Score=61.39 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc----ccHHHHHHHHhhCCc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALRI 81 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~~i 81 (230)
...+-+...++..+.||.+-+. +.+.++..++++.++++|+|+|.+|--......+..+. .-.+.++.+++.+++
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI 164 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence 3344444555555789988884 45667889999999999999999986421111111111 124778888888899
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||+ .++++.+..++.+.+++.|+|+|.+.
T Consensus 165 Pv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 165 PVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 998 45677778888888888999998653
No 183
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.79 E-value=0.00022 Score=60.05 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+..+.+.|+|++.+.+-..... .+..++..|+.++++.+. .++||++-||| +.+++.++++ +|++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~-~Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLA-TGVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEhhHhhCC
Confidence 4555678999999988644322 223345678888888776 58999999999 5899998886 899999999998866
Q ss_pred Ccc
Q 026945 117 PAL 119 (230)
Q Consensus 117 P~l 119 (230)
++.
T Consensus 193 ~d~ 195 (211)
T PRK03512 193 ADW 195 (211)
T ss_pred CCH
Confidence 653
No 184
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=97.75 E-value=0.00013 Score=66.26 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEEC------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCC----Cc
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKK----FR 66 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~----~~ 66 (230)
-.++.|++++|++.++ .+..+-.+ .+++.++....|..+++.|.+.+.+.+++....- +.+ ..
T Consensus 224 ~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~ 303 (400)
T KOG0134|consen 224 CRFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREA 303 (400)
T ss_pred hhhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhcccccccccccc
Confidence 3567788999988762 22222222 1345567788899999999996666554433210 011 11
Q ss_pred ccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 67 ADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
...+....++...+.||+ ++|+.++.+.+.++++....|+|..||.++.||++..++..+
T Consensus 304 ~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 304 FFVEFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred chhhhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 234556667777777766 677899999999999988888999999999999999987653
No 185
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.73 E-value=0.00019 Score=63.04 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC--CCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG--gI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+..+..++.|+|+|.+.-.+....+...++.+++.++++++.+++|+++-| || +.+++.++++ +|+++|-+++++.
T Consensus 157 ea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~-~G~~kinv~T~i~ 234 (281)
T PRK06806 157 EAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQ-HGIRKINVATATF 234 (281)
T ss_pred HHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHH-cCCcEEEEhHHHH
Confidence 333344568999998843332221112345799999999999999999999 99 6888999886 8999999999998
Q ss_pred hCC
Q 026945 115 ENP 117 (230)
Q Consensus 115 ~nP 117 (230)
.+|
T Consensus 235 ~a~ 237 (281)
T PRK06806 235 NSV 237 (281)
T ss_pred HHH
Confidence 853
No 186
>PRK08999 hypothetical protein; Provisional
Probab=97.71 E-value=0.0002 Score=63.35 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
-+..+.+.|+|++.+.+-..........+..++.++++++.+++||++-||| +++++.++++ +|++||.+-+++
T Consensus 238 ~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g~~gva~i~~~ 311 (312)
T PRK08999 238 ELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hCCCEEEEEEEe
Confidence 3556677899999998864432211123557899999999999999999999 8999999886 899999887654
No 187
>PLN02979 glycolate oxidase
Probab=97.67 E-value=0.00073 Score=61.20 Aligned_cols=90 Identities=20% Similarity=0.344 Sum_probs=67.7
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------c-CCCCCcC------------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------G-RTRDEKD------------------------------ 61 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~-rt~~~~~------------------------------ 61 (230)
+-|.+.++.+..|.+.+.+++++.+++|+..|.+. | |.++.++
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 44677777766677788899999999999998773 1 2111110
Q ss_pred -----CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 -----GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 -----~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+..+|+.++.+++..++|||+ .||.+.+|+..+.+ .|+|+|.++
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~-~Gvd~I~Vs 251 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 251 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHh-cCCCEEEEC
Confidence 012346799999999999999998 66779999999887 899998774
No 188
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.65 E-value=0.00042 Score=60.00 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+++.+.++++...+ .++-+-|=+. +.++ ++.+.++|++.|-|..|.-.. ...|.+...++...++
T Consensus 143 ~~~~l~~l~~~a~~-lGle~lVEVh---~~~E----l~~al~~~a~iiGINnRdL~t-----f~vd~~~~~~l~~~ip~~ 209 (254)
T PF00218_consen 143 SDDQLEELLELAHS-LGLEALVEVH---NEEE----LERALEAGADIIGINNRDLKT-----FEVDLNRTEELAPLIPKD 209 (254)
T ss_dssp GHHHHHHHHHHHHH-TT-EEEEEES---SHHH----HHHHHHTT-SEEEEESBCTTT-----CCBHTHHHHHHHCHSHTT
T ss_pred CHHHHHHHHHHHHH-cCCCeEEEEC---CHHH----HHHHHHcCCCEEEEeCccccC-----cccChHHHHHHHhhCccc
Confidence 34555666666544 5666666665 2222 444558899999999987653 2567788888877664
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.+|+-+||.|++|+..+.+ .|+|||.||+++|.+|+.-..
T Consensus 210 ~~~iseSGI~~~~d~~~l~~-~G~davLVGe~lm~~~d~~~~ 250 (254)
T PF00218_consen 210 VIVISESGIKTPEDARRLAR-AGADAVLVGEALMRSPDPGEA 250 (254)
T ss_dssp SEEEEESS-SSHHHHHHHCT-TT-SEEEESHHHHTSSSHHHH
T ss_pred eeEEeecCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHH
Confidence 78899999999999998775 899999999999999886543
No 189
>PLN02535 glycolate oxidase
Probab=97.65 E-value=0.00086 Score=60.91 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=70.2
Q ss_pred HhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC------------------------
Q 026945 14 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG------------------------ 62 (230)
Q Consensus 14 v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~------------------------ 62 (230)
|.+..+-|....+-+..|.+.+.+++++.+++|+..|.|.- |.+..+++
T Consensus 118 va~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 197 (364)
T PLN02535 118 VASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSG 197 (364)
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccccc
Confidence 33333456777777766777889999999999999987741 21211111
Q ss_pred --------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 63 --------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 63 --------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+..+|+.++.+++..++||++ .||.+++|+..+.+ .|+|+|.++
T Consensus 198 ~~~~~~~~~~~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~-~GvD~I~vs 251 (364)
T PLN02535 198 LEAFASETFDASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVE-VGVAGIIVS 251 (364)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHh-cCCCEEEEe
Confidence 12346899999999999999988 77889999998886 899999774
No 190
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.64 E-value=0.00043 Score=71.84 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHH-HHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNA-IKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~-i~~ 74 (230)
.++-+..+|..++... +.||+||+-.+.... .++..+.++|+|.|+|.|........ +. +.-|+. +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg---~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~-GlP~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVG---TIATGVAKAYADLITISGYDGGTGASPLTSVKYA-GSPWELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCcc---HHHhChhhcCCCEEEEeCCCCCcccccHHHHhhC-CccHHHHHHH
Confidence 5677889999999876 689999997643321 35556778999999999864321100 11 223443 434
Q ss_pred HHhh-----C--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 75 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 75 i~~~-----~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+. + .+.+++.|+++|+.|+..++. .|||.|.+|+++|----
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a-LGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAI-LGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH-cCCcccccchHHHHHcC
Confidence 3332 2 499999999999999999997 89999999999987544
No 191
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.60 E-value=0.00099 Score=60.55 Aligned_cols=90 Identities=20% Similarity=0.344 Sum_probs=66.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------c-CCCCCcCC-----------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------G-RTRDEKDG----------------------------- 62 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~-rt~~~~~~----------------------------- 62 (230)
+-|....+-+..|.+.+.+++++.+++|+..|.|. | |.++.+++
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 200 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence 34566666665677778899999999999998774 1 21111100
Q ss_pred ------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 63 ------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 63 ------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+..+|+.++.+++..++|||+ .||.+.+|+..+.+ .|+|+|.++
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~-~Gvd~I~Vs 252 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 252 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHH-cCCCEEEEC
Confidence 12346899999999999999998 66779999999997 899999774
No 192
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.58 E-value=0.00065 Score=58.76 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=60.4
Q ss_pred HHHHHHH-HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 35 TIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 35 ~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
..+.++. ++..++|.|.|+|.... .+++.+.++++++.+++||++++|+ |++.+.+.|. -|||+.+|+.+
T Consensus 160 ~~~~~~~a~~~~~aDaviVtG~~TG------~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~--~ADG~IVGS~~ 230 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVTGKATG------EPPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLS--YADGAIVGSYF 230 (254)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccC------CCCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHH--hCCEEEEeeee
Confidence 3344544 47789999999986432 2678899999999999999999999 6899999997 49999999865
Q ss_pred hhCCcccc
Q 026945 114 LENPALFA 121 (230)
Q Consensus 114 l~nP~lf~ 121 (230)
-.|=.+..
T Consensus 231 K~~G~~~n 238 (254)
T PF03437_consen 231 KKDGKWEN 238 (254)
T ss_pred eeCCEeCC
Confidence 54443333
No 193
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.57 E-value=0.00036 Score=64.36 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred HHHHHHHHHcC-CCEEEEecCCCCCcCCCCCc----ccHHHHHHHHhhC--------CccEEEcCCCCCHHHHHHHHHhh
Q 026945 36 IKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEET 102 (230)
Q Consensus 36 ~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~--------~ipvi~nGgI~s~~da~~~l~~~ 102 (230)
.+-++.+++.| +|.|++. ... .|..+. .-...+.++++.+ ++||++.|||.|++++..+|. .
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EA---GGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-l 240 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADS---GGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-L 240 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccC---CCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-c
Confidence 34455555566 6999996 221 122221 2234455555554 699999999999999999997 7
Q ss_pred CCcEEEEehhhhhCCcc
Q 026945 103 GCEGVLSAESLLENPAL 119 (230)
Q Consensus 103 gadgVmigR~~l~nP~l 119 (230)
|||+|++|..++.-+.-
T Consensus 241 GAd~V~~GT~flat~Ea 257 (418)
T cd04742 241 GADFIVTGSINQCTVEA 257 (418)
T ss_pred CCcEEeeccHHHhCccc
Confidence 99999999999997764
No 194
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.57 E-value=0.00053 Score=59.39 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
...+.++.....| +|.|+|+|.... .+.+|+.++++++.. ++||+.+||+ +++.+.++++. +||+.+|+
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG------~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~--adGviVgS 228 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTG------TEVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI--ADGVIVAT 228 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCC------CCCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh--CCEEEECC
Confidence 4556777766666 999999996432 267999999999865 6899999999 69999999984 99999999
Q ss_pred hhhhCCccc
Q 026945 112 SLLENPALF 120 (230)
Q Consensus 112 ~~l~nP~lf 120 (230)
++= +|-.+
T Consensus 229 ~~K-~~G~~ 236 (257)
T TIGR00259 229 TIK-KDGVF 236 (257)
T ss_pred Ccc-cCCcc
Confidence 865 44433
No 195
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.56 E-value=0.0015 Score=57.34 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=55.3
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC--CCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG--gI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+..++.|+|+|.+.-.|.-..+...+..+++.++++++.+++|+++-| || +.+++.++++ .|+++|-+++.+.
T Consensus 160 ~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~-~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 160 QFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIK-LGIAKINIDTDCR 234 (282)
T ss_pred HHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHH-cCCCEEEECcHHH
Confidence 333458999999753332211112356789999999999999999999 88 5788888887 7999999988654
No 196
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.53 E-value=0.0026 Score=55.22 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.+.++++++..++||+..+||++++++.++++ +||||.+|.+++
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv 232 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALV 232 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHH
Confidence 45899999989999999999999999999886 499999999887
No 197
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.52 E-value=0.0016 Score=55.50 Aligned_cols=104 Identities=15% Similarity=0.356 Sum_probs=71.5
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-c---------CC---------------
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-K---------DG--------------- 62 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-~---------~~--------------- 62 (230)
++++++++.. ++|+.+|+=+ .+...+++.+.++|++.++||.-+... - .+
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~ 129 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMV----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEV 129 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECC----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHH
Confidence 5788888877 8999999873 345567789999999999999753221 0 00
Q ss_pred ---------------------CCCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 63 ---------------------KKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 63 ---------------------~~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.|.. ..+.++++++.. .+.+...||| +.+.+..+.+ .|+|.+++||++..+
T Consensus 130 l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~-aGad~iVvGsaI~~a 207 (228)
T PTZ00170 130 LFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAAD-AGANVIVAGSSIFKA 207 (228)
T ss_pred HHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHH-cCCCEEEEchHHhCC
Confidence 00110 123344455543 3678889999 4678887776 899999999987766
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
++
T Consensus 208 ~d 209 (228)
T PTZ00170 208 KD 209 (228)
T ss_pred CC
Confidence 55
No 198
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.49 E-value=0.0016 Score=59.53 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=67.0
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------------cCCCC---C----------c-------------C
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------------GRTRD---E----------K-------------D 61 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------------~rt~~---~----------~-------------~ 61 (230)
-|...++-+..|.+.+.+++++.+++|+..|.+. -|+.. . . .
T Consensus 138 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (383)
T cd03332 138 APRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGED 217 (383)
T ss_pred CCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCC
Confidence 4667776665566778899999999999998886 11110 0 0 0
Q ss_pred C-----------------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 G-----------------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 ~-----------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
. ..+..+|+.++++++..++||++- ||.|.+|+..+.+ .|+|+|.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~-~G~d~I~vs 281 (383)
T cd03332 218 PEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVE-AGVDGVVVS 281 (383)
T ss_pred cccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHH-CCCCEEEEc
Confidence 0 013468999999999999999984 7789999999997 899999885
No 199
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.49 E-value=0.0039 Score=61.08 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
++.+.++++...+ .++-+.|-++ +. +-+++..++|++.|-|..|.-.. -..|.+...++...+ ++
T Consensus 146 ~~~l~~l~~~a~~-lGme~LvEvh---~~----~el~~a~~~ga~iiGINnRdL~t-----f~vd~~~t~~L~~~ip~~~ 212 (695)
T PRK13802 146 DAQLKHLLDLAHE-LGMTVLVETH---TR----EEIERAIAAGAKVIGINARNLKD-----LKVDVNKYNELAADLPDDV 212 (695)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeC---CH----HHHHHHHhCCCCEEEEeCCCCcc-----ceeCHHHHHHHHhhCCCCc
Confidence 3445555554433 4555555554 21 22445566788888888886543 256778888887776 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+|+-+||+|++|+..+.+ .|+|+|.||.++|..|+.-.
T Consensus 213 ~~VsESGI~~~~d~~~l~~-~G~davLIGeslm~~~dp~~ 251 (695)
T PRK13802 213 IKVAESGVFGAVEVEDYAR-AGADAVLVGEGVATADDHEL 251 (695)
T ss_pred EEEEcCCCCCHHHHHHHHH-CCCCEEEECHHhhCCCCHHH
Confidence 7888899999999998886 89999999999999988533
No 200
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.49 E-value=0.00077 Score=62.28 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcC-CCCCcccHHHHHHHHhhC---------CccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~---------~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
+....+.|+|+|.+.+-...... ....+..|+.++++++.+ ++||++-||| +.+++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 45566789999999886544321 123456788888776654 6999999999 7999999996 9999999
Q ss_pred EehhhhhCCc
Q 026945 109 SAESLLENPA 118 (230)
Q Consensus 109 igR~~l~nP~ 118 (230)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986554
No 201
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.48 E-value=0.00066 Score=56.99 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
..+..++|+.++++|+++|++..-.... .-..+.++.+++.+++||+.-|.+.+...++.+++ .|||+|.++-
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~------~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~~ 102 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYF------QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLIV 102 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccc------CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEee
Confidence 3568999999999999999988654321 12457888888888999999888999988888886 8999998876
Q ss_pred hhhh
Q 026945 112 SLLE 115 (230)
Q Consensus 112 ~~l~ 115 (230)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 6554
No 202
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.47 E-value=0.0007 Score=57.52 Aligned_cols=79 Identities=11% Similarity=0.286 Sum_probs=56.4
Q ss_pred HHHHHHHHHcC-CCEE---EEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~G-~~~i---~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.++.+.+.| +|+| ++++.+..+. ..+...+.++++++. .++||.+-||| +.+++.++.+ .|+|+|.+|
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~-aGad~vvvg 202 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAE-AGANVIVAG 202 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHH-cCCCEEEEC
Confidence 34455555554 9998 5555433321 123456777888776 35899999999 7999998886 899999999
Q ss_pred hhhhhCCcc
Q 026945 111 ESLLENPAL 119 (230)
Q Consensus 111 R~~l~nP~l 119 (230)
+++...++.
T Consensus 203 sai~~~~d~ 211 (229)
T PLN02334 203 SAVFGAPDY 211 (229)
T ss_pred hHHhCCCCH
Confidence 998876653
No 203
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.47 E-value=0.0009 Score=57.02 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred HHHHHHHHHhh---cCCceEEEEECCCCCh--------HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 6 LVKSLVEKLAL---NLNVPVSCKIRVFPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 6 ~~~eiv~~v~~---~~~~pvsvKiR~g~~~--------~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.+.+.++.+++ ..++||.+=.-+ .+. +.....++.+.++|+|+|-..-... . + ...-+.+.+++
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~-~-~t~~~~~~~~~ 183 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--V-G-ATPEDVELMRK 183 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--S-C-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--c-c-ccHHHHHHHHH
Confidence 33444444443 347888876332 211 1356788888999999998765411 1 1 11234556666
Q ss_pred HHhhCCcc----EEEcCCC------CCHHHHHHHHHhhCC--cEEEEehhhh
Q 026945 75 VKNALRIP----VLANGNV------RHMEDVQKCLEETGC--EGVLSAESLL 114 (230)
Q Consensus 75 i~~~~~ip----vi~nGgI------~s~~da~~~l~~~ga--dgVmigR~~l 114 (230)
+.+..++| |.++||+ ++.+++.++++ .|| -|+++||.++
T Consensus 184 ~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~-aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 184 AVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIE-AGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHH-TTHSEEEEEEHHHHH
T ss_pred HHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHH-cCChhHHHHHHHHHH
Confidence 66667899 9999999 99999999997 899 8999999765
No 204
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.46 E-value=0.0016 Score=58.41 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IP 82 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ip 82 (230)
++...+.++.+++...+.+.+ +.+ .+..+.++.+.++|++.|.+..... .. ..-++.++++++..+ +|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~~----~~~-~~~~~~~~~l~eagv~~I~vd~~~G-----~~-~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAAV----GTR-EDDKERAEALVEAGVDVIVIDSAHG-----HS-VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEec----CCC-hhHHHHHHHHHhcCCCEEEEECCCC-----Cc-HHHHHHHHHHHHHCCCce
Confidence 455566667766543333332 222 4567888899999999999865321 11 123578899998774 88
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|++ |++.|.+++..+.+ .|+|+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~-aGaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLID-AGADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHh-cCCCEEEEC
Confidence 888 99999999999886 899999984
No 205
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.45 E-value=0.00069 Score=60.46 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCC---C----------------------Ch----------------HHHHHHHH
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVF---P----------------------NL----------------QDTIKYAK 40 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g---~----------------------~~----------------~~~~~~a~ 40 (230)
.|+.+.+.++.+++. .+.|+.|.+-+. + .. -.+...++
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s~~~A~ 117 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPSPGLLK 117 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 577788888888774 577777766221 0 00 01346788
Q ss_pred HHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHHhh----------CCccEEEcCCCCCHHHHHHHHHhhCC-----
Q 026945 41 MLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNA----------LRIPVLANGNVRHMEDVQKCLEETGC----- 104 (230)
Q Consensus 41 ~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~~~----------~~ipvi~nGgI~s~~da~~~l~~~ga----- 104 (230)
.++++|+|.|.+.|...-. ..|+ ..+..+.++.+. .++|||+.|||.+...+..++. .|+
T Consensus 118 ~a~~~GaD~vVaqG~EAGG---H~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala-LGA~~~~~ 193 (320)
T cd04743 118 QFLENGARKFIFEGRECGG---HVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA-LAAPLAER 193 (320)
T ss_pred HHHHcCCCEEEEecCcCcC---CCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH-cCCccccc
Confidence 8899999999998875542 2221 112233333222 2799999999999999988886 566
Q ss_pred ---cEEEEehhhhhCCcc
Q 026945 105 ---EGVLSAESLLENPAL 119 (230)
Q Consensus 105 ---dgVmigR~~l~nP~l 119 (230)
+||.+|..++.-+..
T Consensus 194 Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccEEEEccHHhcchhh
Confidence 899999998887665
No 206
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.44 E-value=0.002 Score=53.34 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=47.9
Q ss_pred CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 47 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 47 ~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
++++.+.+..............++.++++++.. ++|+++.|||+ ++++.++++ .|+|+|.+|++++..+...
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~-~gad~iivgsai~~~~~~~ 204 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAE-AGADVLVAGSALFGSDDYA 204 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEECHHHhCCCCHH
Confidence 788866554321100001112234556666655 38999999997 599998886 8999999999998776643
No 207
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.44 E-value=0.0011 Score=57.76 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
+.|+++++.+++||.-++|.+. ..-++.|.++|+|.|.-+.|.+ | ..+.+..+|...++|+++ |
T Consensus 55 ~~I~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r~r--------P-~~~~~~~iK~~~~~l~MA--D 118 (283)
T cd04727 55 KMIKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLT--------P-ADEEHHIDKHKFKVPFVC--G 118 (283)
T ss_pred HHHHHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCCCC--------c-HHHHHHHHHHHcCCcEEc--c
Confidence 3477777788999999998654 5668899999999995333321 2 467888898877888886 9
Q ss_pred CCCHHHHHHHHHhhCCcEE
Q 026945 89 VRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgV 107 (230)
+.|.+++..+.+ .|+|.|
T Consensus 119 ~stleEal~a~~-~Gad~I 136 (283)
T cd04727 119 ARNLGEALRRIS-EGAAMI 136 (283)
T ss_pred CCCHHHHHHHHH-CCCCEE
Confidence 999999999997 799955
No 208
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.43 E-value=0.0016 Score=54.82 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+.+.+.+-+.++++.+ ++|+-|=+=.+ .+.++....++...++|+|+|-.+.... .+++..+.++.+++.+
T Consensus 100 ~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~------~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 100 NEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG------AGGATVEDVRLMRNTVG 173 (211)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC------CCCCCHHHHHHHHHHhc
Confidence 4566777777887766 45555522222 2345667888899999999998653321 1346666666666654
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++||-+.|||+|.+++.++++ .|++-+-...
T Consensus 174 ~~v~IKaaGGirt~~~a~~~i~-aGa~riGts~ 205 (211)
T TIGR00126 174 DTIGVKASGGVRTAEDAIAMIE-AGASRIGASA 205 (211)
T ss_pred cCCeEEEeCCCCCHHHHHHHHH-HhhHHhCcch
Confidence 599999999999999999997 7888665443
No 209
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.40 E-value=0.0032 Score=55.63 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=68.0
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHH
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 98 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~ 98 (230)
..|+.+.+-...+.+.+.+.++.+.+.|++.|.+|.-..... . ...|+.++++++.+++||++- ++.+.+++..+
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a 189 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRA 189 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHH
Confidence 357777776554667778888999999999999997654321 1 257899999999999999985 47899999887
Q ss_pred HHhhCCcEEEEe
Q 026945 99 LEETGCEGVLSA 110 (230)
Q Consensus 99 l~~~gadgVmig 110 (230)
.+ .|+|+|.++
T Consensus 190 ~~-~G~d~I~v~ 200 (299)
T cd02809 190 VD-AGADGIVVS 200 (299)
T ss_pred HH-CCCCEEEEc
Confidence 75 899999773
No 210
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.40 E-value=0.0011 Score=54.84 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=53.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+....+.|+|++-+.+ |. ...-.++++.++..+ ++|+++.||| +++++.++++ +|+++|.++++++.
T Consensus 118 ~~~A~~~Gadyv~~Fp-t~-------~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 118 IVTAWQAGASCVKVFP-VQ-------AVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHCCCCEEEECc-CC-------cccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHH-CCCeEEEEehhccc
Confidence 4455678999999844 11 122358899999988 5999999999 7899999997 89999999997754
No 211
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.40 E-value=0.001 Score=55.78 Aligned_cols=68 Identities=26% Similarity=0.307 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+....+.|+|++.+.+ . ....+++++.++..+ ++|+++.||| +++++.++++ +|+++|.++++++..
T Consensus 117 ~~~A~~~Gad~vk~Fp---a------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~-aGa~~vav~s~l~~~ 185 (206)
T PRK09140 117 AFAALRAGAQALKLFP---A------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLA-AGAAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHcCCCEEEECC---C------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHH-CCCeEEEEehHhccc
Confidence 4555678999998733 1 123478899999887 4999999999 7899999997 899999999998764
Q ss_pred C
Q 026945 117 P 117 (230)
Q Consensus 117 P 117 (230)
.
T Consensus 186 ~ 186 (206)
T PRK09140 186 G 186 (206)
T ss_pred c
Confidence 3
No 212
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.39 E-value=0.00083 Score=62.40 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHcC-CCEEEEecCCCCCcCCCCCc-cc---HHHHHHHHhhC--------CccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 40 KMLEDAG-CSLLAVHGRTRDEKDGKKFR-AD---WNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 40 ~~l~~~G-~~~i~vh~rt~~~~~~~~~~-~~---~~~i~~i~~~~--------~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
..+++.| +|.|++. ... .|..+. .. ...+.++++.+ +|||++.|||.|++++..+|. .|||+
T Consensus 175 ~~a~~~g~aD~Ivve-~EA---GGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAdg 249 (444)
T TIGR02814 175 ELARRVPVADDICVE-ADS---GGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGADF 249 (444)
T ss_pred HHHHhCCCCcEEEEe-ccC---CCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCcE
Confidence 3344555 6999884 211 122221 12 33444444555 799999999999999999997 79999
Q ss_pred EEEehhhhhCCcc
Q 026945 107 VLSAESLLENPAL 119 (230)
Q Consensus 107 VmigR~~l~nP~l 119 (230)
|.+|..++.-+.-
T Consensus 250 V~~GT~flat~Es 262 (444)
T TIGR02814 250 IVTGSVNQCTVEA 262 (444)
T ss_pred EEeccHHHhCccc
Confidence 9999999987664
No 213
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00075 Score=57.15 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|++|+++||..+---+-.- ....|..+...++-+.+..++|||.--||.++.|+...++ .|||+|++..+.-
T Consensus 143 ~arrLee~GcaavMPl~aPI---GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA 215 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPI---GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIA 215 (262)
T ss_pred HHHHHHhcCceEeccccccc---cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhh
Confidence 45555666665553222111 1123566788899999999999999999999999999997 8999999977554
No 214
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.39 E-value=0.0035 Score=56.66 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+-||+..+++++.++
T Consensus 168 ~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 168 TADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIE-------E--PT-LQHDYEGHARIASALR 237 (355)
T ss_pred ChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEE-------C--CC-CCcCHHHHHHHHHhcC
Confidence 4556678899999887 467777777778989999999999999999887 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+...+.++.++.++++...+|.|.+
T Consensus 238 ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 238 TPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred CCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 99999888999999999998777887765
No 215
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.39 E-value=0.00091 Score=56.60 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=52.2
Q ss_pred HHHHHcCCCEEEEecCCCCCc----CCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEK----DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~----~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+.+.|.++|.+-+|..... ....+...-+.++.+++.. ++||++.|||++++++..+++ .|+|||.+|++++
T Consensus 128 ~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa~l 206 (223)
T PRK04302 128 AAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALE-LGADGVLLASGVV 206 (223)
T ss_pred HHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHc-CCCCEEEEehHHh
Confidence 345566777777666421110 0000111123344566543 699999999999999999885 8999999999999
Q ss_pred hCCcc
Q 026945 115 ENPAL 119 (230)
Q Consensus 115 ~nP~l 119 (230)
..++.
T Consensus 207 ~~~~~ 211 (223)
T PRK04302 207 KAKDP 211 (223)
T ss_pred CCcCH
Confidence 76664
No 216
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.36 E-value=0.0027 Score=52.97 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+.+.+.+-+.++++.+ ++|+-+=+=.+ .+.+.....++...++|+|+|-...... .+++..+.++.+++.+
T Consensus 99 ~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~------~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 99 DYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFG------PGGATVEDVKLMKEAVG 172 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhC
Confidence 3455666677777765 45554422222 2345677888899999999998652211 1345566655555544
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEE
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgV 107 (230)
++||-++|||+|.+++.++++ .||+-+
T Consensus 173 ~~v~ik~aGGikt~~~~l~~~~-~g~~ri 200 (203)
T cd00959 173 GRVGVKAAGGIRTLEDALAMIE-AGATRI 200 (203)
T ss_pred CCceEEEeCCCCCHHHHHHHHH-hChhhc
Confidence 699999999999999999997 788754
No 217
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.0023 Score=54.14 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC--C-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~--g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|++.+.+-|+++++++.-++.+|+=+ + .+.++....++...++|+|+|-=+... ..+++..+.++-+++.
T Consensus 106 g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf------~~~gAT~edv~lM~~~ 179 (228)
T COG0274 106 GNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF------SAGGATVEDVKLMKET 179 (228)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC------CCCCCCHHHHHHHHHH
Confidence 368899999999999886445666544 2 344566888899999999999743321 1346777888888887
Q ss_pred CC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 79 LR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 79 ~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++ +.|=++|||+|.+|+..+++ .|+.-+-..+
T Consensus 180 vg~~vgvKaSGGIrt~eda~~~i~-aga~RiGtSs 213 (228)
T COG0274 180 VGGRVGVKASGGIRTAEDAKAMIE-AGATRIGTSS 213 (228)
T ss_pred hccCceeeccCCcCCHHHHHHHHH-HhHHHhcccc
Confidence 75 77889999999999999997 7766554444
No 218
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.36 E-value=0.00099 Score=63.00 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=59.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc---EEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad---gVmigR~~l~ 115 (230)
+....+.|+|+|.+.+-..........+..++.++++++..++||++-||| +++++.++++ +|++ ||.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~-~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVME-SGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHH-cCCCcCceEEEEeHHhc
Confidence 455667899999976653332211123567999999998889999999999 5999998886 7888 9999999885
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 481 ~~d 483 (502)
T PLN02898 481 QED 483 (502)
T ss_pred CCC
Confidence 443
No 219
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.35 E-value=0.0031 Score=56.98 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=67.8
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC-------CCcCC----------------------------CC
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKDG----------------------------KK 64 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~-------~~~~~----------------------------~~ 64 (230)
.|...-+....|...+.++.++++++|++.|.+|-=+. +.+++ ..
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 56666666656767788999999999999999983211 11111 11
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+...|+.++++++..++||++- +|.+.+|+..+.+ .|+|+|.++
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~-~G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAE-YGVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHH-cCCCEEEEE
Confidence 3367999999999999999986 7789999998875 899999875
No 220
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.34 E-value=0.0033 Score=56.94 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
++|+ +.+-++.+++.. +.||.+-+..... ..+..++.+.++..+++++.+|--.........+..++ +.++.+
T Consensus 103 ~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i 181 (352)
T PRK05437 103 KDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEI 181 (352)
T ss_pred cChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHH
Confidence 4677 777778888766 7898887665221 01123455566667899999996332111011123345 578888
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 182 ~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~Vs 217 (352)
T PRK05437 182 VSALPVPVIVKEVGFGISKETAKRLAD-AGVKAIDVA 217 (352)
T ss_pred HHhhCCCEEEEeCCCCCcHHHHHHHHH-cCCCEEEEC
Confidence 8888999996 666678888876664 899999773
No 221
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.33 E-value=0.00027 Score=60.22 Aligned_cols=48 Identities=27% Similarity=0.538 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.++.++...++|++..|||+|.+.+.++.+ .|||.|.+|..+..||+
T Consensus 172 ~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~-aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 172 EVIAAVKKLSDIPLIVGGGIRSPEQAREMAE-AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HHHHHHHHSSSSEEEEESS--SHHHHHHHHC-TTSSEEEESCHHHHHH-
T ss_pred HHHHHHHhcCCccEEEeCCcCCHHHHHHHHH-CCCCEEEECCEEEEcch
Confidence 4445555566899999999999999999996 89999999999999998
No 222
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.30 E-value=0.0034 Score=57.47 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=71.4
Q ss_pred HHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC---cC-CCCCcccHHHH----HHHHhhCCc
Q 026945 11 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---KD-GKKFRADWNAI----KAVKNALRI 81 (230)
Q Consensus 11 v~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---~~-~~~~~~~~~~i----~~i~~~~~i 81 (230)
+..+++.. ++||.+-+--+.+.+++.++++.++++|+|+|.+---.... +. +..-.-+.+.+ +.+++.+++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~i 183 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATV 183 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcC
Confidence 45565555 67998887545677899999999999999999873211110 10 00001234555 555777789
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
||+ .+.++.+..++.+.+.+.|+|||.+---+.
T Consensus 184 Pv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 184 PVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred ceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 987 678888888888888789999997754443
No 223
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.30 E-value=0.0055 Score=53.84 Aligned_cols=98 Identities=24% Similarity=0.369 Sum_probs=67.7
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCCCcccHHHHHHHHhhCCccEE-
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
+...++..+.|+.+-++. .+.++..+.++.++++|+|+|.+|-....... +..+..-.+.++.+++.+++||.
T Consensus 81 ~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 81 LLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 333444457899888874 45688999999999999999999865433211 11111234677888888889988
Q ss_pred -EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 85 -ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 -~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.++.+..++.+.+.+.|+|+|.+
T Consensus 160 Kl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 160 KLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4566656666666677799999865
No 224
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.29 E-value=0.0032 Score=56.99 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=65.6
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC-----------------------------C
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG-----------------------------K 63 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~-----------------------------~ 63 (230)
-|.+..+.+..|.+.+.+++++++++|+..|.+.- |.++.+++ .
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 45666666656767788999999999999887742 11111100 0
Q ss_pred CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 64 ~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+..+|+.++++++..++||++-| |.+++|+..+.+ .|+|+|.+
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~-~G~d~I~v 248 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVKG-IQSPEDADVAIN-AGADGIWV 248 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHH-cCCCEEEE
Confidence 123579999999999999999875 889999998886 89999988
No 225
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0059 Score=52.70 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--I 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--i 81 (230)
.+.+.+++....+ .++-+-|-+. + ..++ +++.+.|+..|-|..|.-.. + ..|.+...++...++ .
T Consensus 142 ~~~l~el~~~A~~-LGm~~LVEVh---~---~eEl-~rAl~~ga~iIGINnRdL~t---f--~vdl~~t~~la~~~p~~~ 208 (254)
T COG0134 142 DEQLEELVDRAHE-LGMEVLVEVH---N---EEEL-ERALKLGAKIIGINNRDLTT---L--EVDLETTEKLAPLIPKDV 208 (254)
T ss_pred HHHHHHHHHHHHH-cCCeeEEEEC---C---HHHH-HHHHhCCCCEEEEeCCCcch---h--eecHHHHHHHHhhCCCCc
Confidence 4445555555533 4565555554 2 2233 34444999999999986542 1 567888888888764 7
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+|.-+||.|++|+..+.+ .|+||+.||.++|.+|..-.
T Consensus 209 ~~IsESGI~~~~dv~~l~~-~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 209 ILISESGISTPEDVRRLAK-AGADAFLVGEALMRADDPEE 247 (254)
T ss_pred EEEecCCCCCHHHHHHHHH-cCCCEEEecHHHhcCCCHHH
Confidence 7889999999999998886 89999999999999998744
No 226
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00013 Score=66.43 Aligned_cols=111 Identities=26% Similarity=0.367 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+..+..+.+..+...+.|+ +|+|+-.+..++..+++.+++.| .+.+|+|-...++.+ ++.|+.++.+-....+|+
T Consensus 314 ~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r~~~--pa~~~~~k~~l~~~~~~~ 388 (477)
T KOG2334|consen 314 AFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDRPTD--PAKWDTPKMVLADLCVKT 388 (477)
T ss_pred HhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccccccCC--CcCCCCHHHHHHHhhhhh
Confidence 3445566667777778888 99999887788999999999988 677888865444333 789999999888889999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+||.+....+. ...++.+||.+||...|-.+|..-
T Consensus 389 ~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~n 424 (477)
T KOG2334|consen 389 KANGPVYETVQR----TDKLFSSIATARGQKYNSSIWSPN 424 (477)
T ss_pred cCCCcchhhhhh----hhhhhHHHhhhhhhhhhccccCcc
Confidence 999999876664 236788999999999998888753
No 227
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.28 E-value=0.004 Score=56.96 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=38.2
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+|+.|+++++..++||++ .+|.|.+|+..+++ .|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~-~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVR-FGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHh-CCCCEEEEC
Confidence 45789999999999999988 77899999999997 899999874
No 228
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.27 E-value=0.0014 Score=54.02 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+....++|+|+|-+... .+...++++.++..+ ++|+++.||| +++++.++++ +|+++|.++..+.
T Consensus 110 ~~~A~~~Gad~i~~~p~---------~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~-~G~~~v~v~s~i~ 175 (190)
T cd00452 110 IMQALELGADIVKLFPA---------EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA-AGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHCCCCEEEEcCC---------cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH-CCCEEEEEchhcc
Confidence 45556899999998431 112457888888777 4999999999 8999999997 8999999999887
No 229
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.27 E-value=0.0026 Score=57.50 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhcC---------CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 4 LPLVKSLVEKLALNL---------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---------~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
++.-.+.++.+++.. ...|.+-+.+. ++..+.++.|.++|+|.|.|..-.... ..-.+.++.
T Consensus 72 ~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~---~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ 142 (352)
T PF00478_consen 72 IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTR---DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKK 142 (352)
T ss_dssp HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESS---TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccccceEEEEecCC---HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHH
Confidence 344556666665421 23344434332 345788889999999999997543221 123477899
Q ss_pred HHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 75 VKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 75 i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+++..+ +|||+ |+|-|.+-++.+++ +|||+|-+|=|
T Consensus 143 ik~~~~~~~via-GNV~T~e~a~~L~~-aGad~vkVGiG 179 (352)
T PF00478_consen 143 IKKKFPDVPVIA-GNVVTYEGAKDLID-AGADAVKVGIG 179 (352)
T ss_dssp HHHHSTTSEEEE-EEE-SHHHHHHHHH-TT-SEEEESSS
T ss_pred HHHhCCCceEEe-cccCCHHHHHHHHH-cCCCEEEEecc
Confidence 999886 88886 88999999999886 89999998854
No 230
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.26 E-value=0.0044 Score=52.13 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--CCCCC-----cccHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKF-----RADWNAIKAV 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--~~~~~-----~~~~~~i~~i 75 (230)
.+.+.++.+..++-+ ++|++|-+-=.-..++-++++..|+++|+|.|.--|.|.... .+..| .+.+.....+
T Consensus 102 a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~I 181 (242)
T PF04481_consen 102 AEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAI 181 (242)
T ss_pred HHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHH
Confidence 455677777777766 688888765444567788999999999999999888775532 11111 1234556778
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+.+++||++.-|+.+.. +--.+. .||.||.+|.+.
T Consensus 182 Sr~v~iPVlcASGlS~vT-~PmAia-aGAsGVGVGSav 217 (242)
T PF04481_consen 182 SRAVSIPVLCASGLSAVT-APMAIA-AGASGVGVGSAV 217 (242)
T ss_pred HhccCCceEeccCcchhh-HHHHHH-cCCcccchhHHh
Confidence 888999999999996543 334454 799999999753
No 231
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.25 E-value=0.002 Score=57.36 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.+.++.+.+..++||+.-+||.+++|+..+++ .|||||.+..|...
T Consensus 236 ~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~ 283 (326)
T PRK11840 236 QNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAE 283 (326)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceecc
Confidence 4889999999999999999999999999999997 89999999998764
No 232
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.25 E-value=0.0065 Score=52.37 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++...++|++.|-|..|.-.. -..|.+...++...+ +..+|+-+||.|++|+..+.+ . +|||.||.++|.+
T Consensus 164 l~~a~~~ga~iiGINnRdL~t-----~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~ 236 (247)
T PRK13957 164 AKLALDCGAEIIGINTRDLDT-----FQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHhCCCCEEEEeCCCCcc-----ceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCC
Confidence 344556788888888776542 256777777787766 467788999999999999765 5 9999999999999
Q ss_pred Ccccc
Q 026945 117 PALFA 121 (230)
Q Consensus 117 P~lf~ 121 (230)
++.-.
T Consensus 237 ~d~~~ 241 (247)
T PRK13957 237 KDIRK 241 (247)
T ss_pred CCHHH
Confidence 88544
No 233
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0095 Score=50.09 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+.+-+...++..++ .++-+-+-+=-.|+ ..+-++.+++.|++.+.+|-..-.|..|. ...|+.+..+++..+
T Consensus 91 ~~~TI~~~i~~A~~-~~~~v~iDl~~~~~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g 164 (217)
T COG0269 91 DDATIKKAIKVAKE-YGKEVQIDLIGVWD---PEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLG 164 (217)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeecCCC---HHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccC
Confidence 34445555555544 35556665543344 44566777779999999996544443332 223677888888765
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+|-..||| +++++..+.. .|++.|.+||++-...+
T Consensus 165 ~~vAVaGGI-~~~~i~~~~~-~~~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGI-TPEDIPLFKG-IGADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCC-CHHHHHHHhc-CCCCEEEECchhcCCCC
Confidence 799999999 6999998776 78999999998765443
No 234
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.23 E-value=0.0013 Score=65.21 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCC---ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 46 GCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 46 G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~---ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|+|++.+.+-..... .+..++..|+.++++++.++ +||++-||| +++++.++++ +|++||.+.++++..++.
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~-~Ga~giAvisai~~a~d~ 203 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA-TGIDGLCVVSAIMAAANP 203 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhCCCCH
Confidence 599999987644322 22233568999999998887 999999999 7999999886 899999999999976663
No 235
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.23 E-value=0.0058 Score=53.90 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=65.2
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcC-----CCCCcccHHHHHHHHhhCCccEEE--cC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipvi~--nG 87 (230)
+..+.|+.+-+. +.+.++..+.++.++++| +|+|.++.-...... ......-++.++.+++.+++||++ +.
T Consensus 88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 345789988885 456788999999999999 999998432211111 111223467788888888999885 45
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
++.+..++.+.+++.|+|++.+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 5656666667777899999865
No 236
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00059 Score=60.82 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
...++.+.+++.|+..|-+........ ....|.+.++.++..++||||++.|-.++++.++.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGs---n~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGS---NKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCC---CCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 478999999999999999888766532 236799999999999999999999999999999999999999653
No 237
>PRK08005 epimerase; Validated
Probab=97.21 E-value=0.0047 Score=52.04 Aligned_cols=104 Identities=10% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------------- 60 (230)
++++++++.+++|+.|-+=+ .+...+++.+.++|++.|++|.-.....
T Consensus 48 ~~i~~l~~~t~~~~DvHLMv----~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 48 KTIQAVAQQTRHPLSFHLMV----SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred HHHHHHHhcCCCCeEEEecc----CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 46777777777787776643 3355788999999999999996421100
Q ss_pred ---------------CCCCCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 61 ---------------DGKKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 61 ---------------~~~~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+.|.. -++-|+++++.. ...+.+-|||+ .+.+..+.+ .|||.+.+|+++..+++
T Consensus 124 ~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~-aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 124 YLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 0111211 123344444443 24688999995 788887775 89999999998876655
No 238
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.20 E-value=0.0075 Score=54.14 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-----
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN----- 77 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~----- 77 (230)
++.+.++++... ..++-+-|-+. +.+ | ++++.++ |++.|-|..|.-... ..|.+...++..
T Consensus 216 ~~~L~~l~~~A~-~LGme~LVEVH---~~~---E-lerAl~~~ga~iIGINNRdL~Tf-----~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 216 DLDIKYMLKICK-SLGMAALIEVH---DER---E-MDRVLGIEGVELIGINNRSLETF-----EVDISNTKKLLEGERGE 282 (338)
T ss_pred HHHHHHHHHHHH-HcCCeEEEEeC---CHH---H-HHHHHhcCCCCEEEEeCCCCCcc-----eECHHHHHHHhhhcccc
Confidence 344555555443 34666656554 212 2 3334455 999999999876532 567777777766
Q ss_pred hC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 78 AL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 78 ~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+ ++.+++-+||+|++|+..+.+ .|+|+|.||.++|..|+.-..+
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l 330 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGI 330 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHH
Confidence 22 355788899999999998876 8999999999999998864443
No 239
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.20 E-value=0.0024 Score=56.44 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHHHHHHHhhC-CccEEEcCC--CCCHHHHHHHHHhhCCcEEEEehh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~-~ipvi~nGg--I~s~~da~~~l~~~gadgVmigR~ 112 (230)
+-++.+.+.|+|+|.+.-.+.-..+.. ++..+++.++++++.+ ++|+++-|| | +.+++.++++ +|++.|-+++.
T Consensus 157 eea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~-~Gi~KiNv~T~ 234 (293)
T PRK07315 157 EDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIK-LGVAKVNVNTE 234 (293)
T ss_pred HHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHH-cCCCEEEEccH
Confidence 334555578999997753333211111 2358999999999999 599999999 8 5788988886 89999999998
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+..+
T Consensus 235 i~~~ 238 (293)
T PRK07315 235 CQIA 238 (293)
T ss_pred HHHH
Confidence 8863
No 240
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0037 Score=58.49 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHH-HHHcCCCEEEEecCCCCC---c---CCCCCcccHHH-HH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDE---K---DGKKFRADWNA-IK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~-l~~~G~~~i~vh~rt~~~---~---~~~~~~~~~~~-i~ 73 (230)
.++-+..+|..+++.. ..+|+||+-.+.. ++.+.. +.++|+|.|+|.|-..-. . -.+.| .-|+. +.
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~gla 360 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHG----VGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLA 360 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccc----hHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHH
Confidence 5778889999999875 4679999976443 222333 889999999998743211 0 00112 22443 23
Q ss_pred HHHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 74 AVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 74 ~i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++-+.+ .+-|++.|+++|..|+..++. .|||.|-+|+++|----
T Consensus 361 e~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a-LGAd~v~~gTa~lia~G 411 (485)
T COG0069 361 ETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAA-LGADAVGFGTAALVALG 411 (485)
T ss_pred HHHHHHHHcCCcceeEEEecCCccCHHHHHHHHH-hCcchhhhchHHHHHhh
Confidence 332221 478999999999999999997 89999999999875433
No 241
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.20 E-value=0.0058 Score=55.64 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=63.4
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC----------------------------CCC
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG----------------------------KKF 65 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~----------------------------~~~ 65 (230)
|...-+-+..|.+-+.+++++.+++|+..|.+.- |.++.+++ ..+
T Consensus 134 ~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (367)
T TIGR02708 134 PHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQ 213 (367)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCC
Confidence 4444444444556678999999999999987741 11111100 012
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+|+.|+++++..++||++= ||.+.+|+..+.+ .|+|+|.++
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~-~Gvd~I~VS 256 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALK-AGASGIWVT 256 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHH-cCcCEEEEC
Confidence 467999999999999999986 5889999999886 899998664
No 242
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.17 E-value=0.0067 Score=54.53 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHhh-cCCceEEEEECCCCChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsvKiR~g~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
.+|+...+. +.+++ ..++|+.+-+....... ...++.+.++..+++++.+|--.........+..++ +.++.+
T Consensus 96 ~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i 174 (333)
T TIGR02151 96 KDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEI 174 (333)
T ss_pred cChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHH
Confidence 477766666 77777 56899988765422111 144456666666889998886322111011122234 778889
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.+.+.+..+. +.|+|+|-++
T Consensus 175 ~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vs 210 (333)
T TIGR02151 175 CSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVA 210 (333)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 9999999986 56556888887655 5899999775
No 243
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.17 E-value=0.0055 Score=55.63 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++++.+-..-+|+.+++.++++.+++.++.++. | .. .+.+++..+++++.+++
T Consensus 172 ~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~~~i 241 (368)
T cd03329 172 VRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYE-------D--PL-REASISSYRWLAEKLDI 241 (368)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCCeEe-------C--CC-CchhHHHHHHHHhcCCC
Confidence 455678889998877 578888777788989999999999999888776 2 11 23478888999999999
Q ss_pred cEEEcCCCCC-HHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRH-MEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s-~~da~~~l~~~gadgVmi 109 (230)
||.+...+.+ ++++.++++...+|.|.+
T Consensus 242 pIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 242 PILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred CEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9988888999 999999999777887766
No 244
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.15 E-value=0.0072 Score=51.36 Aligned_cols=104 Identities=14% Similarity=0.331 Sum_probs=69.8
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
++++++++. +++|+.|-+=+ .+...+++.+.++|++.|++|.-.....
T Consensus 51 ~~i~~lr~~~~~~~~dvHLMv----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i 126 (223)
T PRK08745 51 MVCQALRKHGITAPIDVHLMV----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDIL 126 (223)
T ss_pred HHHHHHHhhCCCCCEEEEecc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHH
Confidence 567888876 58888887654 2356788999999999999996421100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|+.|.. .++-++++++. .++.|-+-|||+ .+.+..+.+ .|+|.+++|+++..
T Consensus 127 ~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~-aGaDi~V~GSaiF~ 204 (223)
T PRK08745 127 DWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAA-AGADTFVAGSAIFN 204 (223)
T ss_pred HHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEChhhhC
Confidence 1121211 23344555443 246688999995 788887775 89999999998765
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 205 ~~d 207 (223)
T PRK08745 205 APD 207 (223)
T ss_pred CCC
Confidence 544
No 245
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.14 E-value=0.01 Score=51.90 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=67.2
Q ss_pred HHHHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC----CCCcccHHHHHHHHhhCCc
Q 026945 7 VKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG----KKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 7 ~~eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~----~~~~~~~~~i~~i~~~~~i 81 (230)
..+-+...++. .+.|+.+-++. .+.++..+.++.++++|+++|.++........+ ..+..-.+.++.+++.+++
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~ 163 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDI 163 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCC
Confidence 33334444444 57899888864 456789999999999999999998654432111 0111124567788888889
Q ss_pred cEEE--cCCCC--CHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~--nGgI~--s~~da~~~l~~~gadgVmig 110 (230)
||++ ++++. ...++.+.+++.|+|+|.+.
T Consensus 164 pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 164 PLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9874 45543 23344455667899999875
No 246
>PRK06801 hypothetical protein; Provisional
Probab=97.14 E-value=0.0035 Score=55.21 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC--CCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg--I~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.+++.|+|+|.++-.|.-.++...++.+++.++++++.+++|+++-|| |. .+++.++.+ .|++.|-+++.+..
T Consensus 162 ~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~-~Gi~KINv~T~~~~ 238 (286)
T PRK06801 162 RDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIE-LGIHKINFYTGMSQ 238 (286)
T ss_pred HHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHH-cCCcEEEehhHHHH
Confidence 33344789999999655554433223357999999999999999999998 74 678888886 89999999886643
No 247
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.11 E-value=0.0088 Score=52.14 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=55.6
Q ss_pred HHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEE
Q 026945 10 LVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA 85 (230)
Q Consensus 10 iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~ 85 (230)
-++.+++..+ .+|.+-++ +.+-+..+.++|+|+|-+-+. ..+.++++.+.++ +|+++
T Consensus 167 av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~------------~~e~lk~~v~~~~~~ipi~A 227 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM------------KPEEIKEAVQLLKGRVLLEA 227 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhcCCCcEEE
Confidence 3555555442 44554443 234466667899999988432 2255666655443 89999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.||| +.+.+.++.+ +|+|++.+|.
T Consensus 228 sGGI-~~~ni~~~a~-~Gvd~Isvga 251 (265)
T TIGR00078 228 SGGI-TLDNLEEYAE-TGVDVISSGA 251 (265)
T ss_pred ECCC-CHHHHHHHHH-cCCCEEEeCH
Confidence 9999 6999998886 9999999954
No 248
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.10 E-value=0.0027 Score=51.82 Aligned_cols=84 Identities=19% Similarity=0.371 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH-HhhC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV-KNAL 79 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i-~~~~ 79 (230)
|.||.++.+|.+++ .+||..|.|+|.- --|+.|+..|+|+|.=+--. -|+|... .| |..+
T Consensus 57 MsDP~~I~eI~~aV----sIPVMAK~RIGHf-----vEAqiLealgVD~IDESEVL--------TpAD~~~--HI~K~~F 117 (208)
T PF01680_consen 57 MSDPKMIKEIMDAV----SIPVMAKVRIGHF-----VEAQILEALGVDYIDESEVL--------TPADEEN--HIDKHNF 117 (208)
T ss_dssp S--HHHHHHHHHH-----SSEEEEEEETT-H-----HHHHHHHHTT-SEEEEETTS----------S-SS------GGG-
T ss_pred cCCHHHHHHHHHhe----Eeceeecccccee-----ehhhhHHHhCCceecccccc--------ccccccc--cccchhC
Confidence 77898877776655 8999999999863 23789999999999855421 1333221 22 3457
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
++|+++ |.++.-.+.+.+. -||..
T Consensus 118 ~vPFVc--GarnLGEALRRI~-EGAaM 141 (208)
T PF01680_consen 118 KVPFVC--GARNLGEALRRIA-EGAAM 141 (208)
T ss_dssp SS-EEE--EESSHHHHHHHHH-TT-SE
T ss_pred CCCeEe--cCCCHHHHHhhHH-hhhhh
Confidence 899886 4567777777776 46653
No 249
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0062 Score=51.43 Aligned_cols=104 Identities=15% Similarity=0.369 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--------------------------C---
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E--- 59 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--------------------------~--- 59 (230)
.+++++++.+..|+.|-+=+ ++...+++.+.++|+++|++|.-... .
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALE 126 (220)
T ss_pred HHHHHHhhcCCCceEEEEec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 57888888778898888754 34568899999999999999953110 0
Q ss_pred --------------cCCCCCc----ccHHHHHHHHhhCC----ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 60 --------------KDGKKFR----ADWNAIKAVKNALR----IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 60 --------------~~~~~~~----~~~~~i~~i~~~~~----ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.+|+.|. .-.+-++++++..+ +-+-.-||| +.+.+..+.+ .|+|-+++|+++..++
T Consensus 127 ~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~-AGad~~VaGSalF~~~ 204 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAA-AGADVFVAGSALFGAD 204 (220)
T ss_pred HHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHH-cCCCEEEEEEEEeCCc
Confidence 0122222 12344555555433 456788999 4677777665 8999999999888888
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
+
T Consensus 205 d 205 (220)
T COG0036 205 D 205 (220)
T ss_pred c
Confidence 8
No 250
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.05 E-value=0.016 Score=50.42 Aligned_cols=100 Identities=13% Similarity=0.257 Sum_probs=69.2
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE-ecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc-C
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-G 87 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n-G 87 (230)
+++++. ..+.||.+|.-...+.++....++.+.+.|..-|.+ |..+..-.......+|+..+..+++..++||+.+ +
T Consensus 124 LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 124 LLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred HHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCC
Confidence 455553 358999999988777888999999999999865555 6434321011123579999999999889999993 3
Q ss_pred CCCC-----HHHHHHHHHhhCCcEEEEeh
Q 026945 88 NVRH-----MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 88 gI~s-----~~da~~~l~~~gadgVmigR 111 (230)
-... +.-+..+.. .|+||+||=+
T Consensus 203 Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~ 230 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIA-AGADGLMIEV 230 (260)
T ss_pred CCCCccchHHHHHHHHHH-cCCCEEEEEe
Confidence 2222 344445554 7999998854
No 251
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.01 Score=51.98 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+-++...+.|+|+|.+- ....+.++++++.++ +|+.+.||| +.+.+.++.+ +|+|+|.+|.-..
T Consensus 199 eea~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 199 EQVREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33555668999999882 123377777777654 788899999 7999999886 9999999997444
Q ss_pred hCCc
Q 026945 115 ENPA 118 (230)
Q Consensus 115 ~nP~ 118 (230)
.-|+
T Consensus 265 sa~~ 268 (277)
T PRK08072 265 SVKA 268 (277)
T ss_pred CCcc
Confidence 3344
No 252
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.03 E-value=0.007 Score=52.45 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C-CChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g-~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-+.++++.++-++.+|+=+ + .+.+ +....++.+.++|+|+|-=+... ..+++..+.++.+++.
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf------~~~gAt~edv~lm~~~ 186 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK------VPVNATLEAARIMLEV 186 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCC------CCCCCCHHHHHHHHHH
Confidence 56778888888888654234455433 2 2334 46788999999999999733221 1235667777776665
Q ss_pred C-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 79 L-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 79 ~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+ ++-|=++|||+|.+++.++++ . |+-.|++-|+
T Consensus 187 i~~~~~~~~vgIKAsGGIrt~~~A~~~i~-a-------g~~~lg~~~~ 226 (257)
T PRK05283 187 IRDMGVAKTVGFKPAGGVRTAEDAAQYLA-L-------ADEILGADWA 226 (257)
T ss_pred HHhcccCCCeeEEccCCCCCHHHHHHHHH-H-------HHHHhChhhc
Confidence 4 377889999999999999997 3 4455666554
No 253
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.02 E-value=0.015 Score=50.53 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.++++++..++||++.=||++++++.++. .|+|||.+|.+++.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 4678889999999999988999999999877 59999999998764
No 254
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.02 E-value=0.011 Score=53.78 Aligned_cols=42 Identities=24% Similarity=0.649 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..|+.|+.+++..+.|||+-| |.+++|+..+.+ .|+|+|.++
T Consensus 223 ~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~-~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIE-LGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHH-CCcCEEEEC
Confidence 578999999999999999975 999999999997 899999874
No 255
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.00 E-value=0.02 Score=49.45 Aligned_cols=100 Identities=14% Similarity=0.285 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ .+.||.+|.-...+.++....++.+.+.|...| .+|-.+..-...+....|...+..+++..++||+..
T Consensus 113 ~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~ 191 (250)
T PRK13397 113 EFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDV 191 (250)
T ss_pred HHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECC
Confidence 34555544 489999999877888899999999999998544 556223221111111568888999999889999885
Q ss_pred ---CCCCC--HHHHHHHHHhhCCcEEEEe
Q 026945 87 ---GNVRH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 ---GgI~s--~~da~~~l~~~gadgVmig 110 (230)
+|.+. +.-+..++. .||||+||=
T Consensus 192 SHs~G~r~~v~~~a~AAvA-~GAdGl~IE 219 (250)
T PRK13397 192 SHSTGRRDLLLPAAKIAKA-VGANGIMME 219 (250)
T ss_pred CCCCcccchHHHHHHHHHH-hCCCEEEEE
Confidence 34332 233445554 799999984
No 256
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.97 E-value=0.013 Score=51.25 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=56.5
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC----Ccc
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIP 82 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~----~ip 82 (230)
.-++.+++... .+|.+-++ +. +-+....++|+|+|-+-..+. +.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t~----eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---TL----EEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---CH----HHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccCCCeE
Confidence 34556666542 34444433 22 224444578999999844322 4444443333 789
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+.||| +++.+.++.+ +|+|+|.+|.-...-|+
T Consensus 230 i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 230 LEASGGI-TLENIRAYAE-TGVDVISTGALTHSAPA 263 (269)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEEcHHHcCCCc
Confidence 9999999 6899998886 99999999755444444
No 257
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.95 E-value=0.016 Score=50.49 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=68.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE-EecCCCCCcCCC-CCcccHHHHHHHHhhCCccEEEc-
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-VHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~-vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
+++++ ...+.||.+|.-...+.++....++.+...|...++ +|..++.. ..| ....|+..+..+++..+.||+..
T Consensus 126 LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~-~~Y~~~~vdl~~i~~lk~~~~~pV~~D~ 203 (266)
T PRK13398 126 LLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTF-ETYTRNTLDLAAVAVIKELSHLPIIVDP 203 (266)
T ss_pred HHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCC-CCCCHHHHHHHHHHHHHhccCCCEEEeC
Confidence 45555 356899999998877788888889999999986544 45433221 122 22458888999998889999983
Q ss_pred CCCCC-----HHHHHHHHHhhCCcEEEEeh
Q 026945 87 GNVRH-----MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 GgI~s-----~~da~~~l~~~gadgVmigR 111 (230)
.--.. +..+...+. .||||+||=+
T Consensus 204 sHs~G~~~~v~~~~~aAva-~Ga~Gl~iE~ 232 (266)
T PRK13398 204 SHATGRRELVIPMAKAAIA-AGADGLMIEV 232 (266)
T ss_pred CCcccchhhHHHHHHHHHH-cCCCEEEEec
Confidence 32233 455556664 7999999854
No 258
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.94 E-value=0.014 Score=50.95 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+-+..+.++|+|+|-+-+. ..+.++++.+.. ++|+.+.||| +++.+.++.+ +|+|++.+|.-..
T Consensus 193 eea~~A~~~gaDyI~ld~~------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~ 258 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHHcCCCEEEECCc------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeec
Confidence 3355566899999988432 246777776665 5999999999 6999998886 9999999997443
No 259
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.94 E-value=0.016 Score=53.17 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhcCCceEEE-EECCCCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHHhh-CCc
Q 026945 5 PLVKSLVEKLALNLNVPVSC-KIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNA-LRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsv-KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~~~-~~i 81 (230)
+.+.+.++++++. ++-+.+ =+.. .+..+.++.+ ..++|.+.+|. .... +. ..-|+-++++++. .++
T Consensus 263 ~ti~~ai~~akk~-GikvgVD~lnp----~tp~e~i~~l-~~~vD~Vllht~vdp~---~~--~~~~~kI~~ikk~~~~~ 331 (391)
T PRK13307 263 STIEKAIHEAQKT-GIYSILDMLNV----EDPVKLLESL-KVKPDVVELHRGIDEE---GT--EHAWGNIKEIKKAGGKI 331 (391)
T ss_pred HHHHHHHHHHHHc-CCEEEEEEcCC----CCHHHHHHHh-hCCCCEEEEccccCCC---cc--cchHHHHHHHHHhCCCC
Confidence 3456667777664 444444 2332 2344566666 67999999995 3322 11 3357788888874 478
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|.+.|||+ .+++.++++ .|+|.+.+||++...++
T Consensus 332 ~I~VdGGI~-~eti~~l~~-aGADivVVGsaIf~a~D 366 (391)
T PRK13307 332 LVAVAGGVR-VENVEEALK-AGADILVVGRAITKSKD 366 (391)
T ss_pred cEEEECCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 999999997 889988886 89999999999876555
No 260
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.91 E-value=0.032 Score=48.51 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCC------------------------CC--hHHHHHHHHHHHHcCCCEEEEecC
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVF------------------------PN--LQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g------------------------~~--~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
.++.+.++++.+++. .++|+.+=.-.. +| .++..++.+.+++.|++.|.+..-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 356788999999854 678887643221 11 234445666666677777666543
Q ss_pred CCCCc------------------CCCCC---c---ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 56 TRDEK------------------DGKKF---R---ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 56 t~~~~------------------~~~~~---~---~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|.... .+.+| + .--+.++++++..++||+..=||++++++.++.+ . ||||.+|.
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~-~-ADGVIVGS 234 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAE-A-ADGVIVGS 234 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHH-h-CCeEEEcH
Confidence 32210 11112 1 1246788899989999999889999999999997 5 99999999
Q ss_pred hhhh
Q 026945 112 SLLE 115 (230)
Q Consensus 112 ~~l~ 115 (230)
+++.
T Consensus 235 AiV~ 238 (265)
T COG0159 235 AIVK 238 (265)
T ss_pred HHHH
Confidence 8764
No 261
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.89 E-value=0.016 Score=52.01 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++.+......-+++ .+|.. ++..+.++.|.++| +|+|+|..-. +++ ..-.+.++++++..+
T Consensus 79 ~~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~Ah-----Ghs-~~~i~~ik~ir~~~p 149 (343)
T TIGR01305 79 SVDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVAN-----GYS-EHFVEFVKLVREAFP 149 (343)
T ss_pred CHHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHhhCC
Confidence 3444455555544333222333 22222 44567788888875 9999985432 111 223578999999887
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
-+.+..|+|-|++++..+++ .|||+|-+|
T Consensus 150 ~~~viaGNV~T~e~a~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELIL-SGADIVKVG 178 (343)
T ss_pred CCeEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 77777799999999999886 899999776
No 262
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.88 E-value=0.015 Score=51.21 Aligned_cols=94 Identities=15% Similarity=0.322 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH-HHHHHHh-hCCccE
Q 026945 8 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKN-ALRIPV 83 (230)
Q Consensus 8 ~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~-~i~~i~~-~~~ipv 83 (230)
.+.++.+++..+ .+|.|-++ +.+-+..+.++|+|+|-+-.-+ +-++. .+..+++ .-++|+
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~-------tleea~eA~~~GaD~I~LDn~~---------~e~l~~av~~~~~~~~~i~l 246 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETE-------TLEQVQEALEYGADIIMLDNMP---------VDLMQQAVQLIRQQNPRVKI 246 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECC-------CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHHhcCCCeEE
Confidence 345555555543 33333333 2333445558999999986322 21222 2222332 346899
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.++||| +.+.+.++.+ +|+|+|.+|.....-|++
T Consensus 247 eAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 247 EASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 999999 6999998885 999999999977756654
No 263
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.86 E-value=0.018 Score=51.56 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHhhcCC-ceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
.+|+.. +-++.+++... .|+.+-+-.... ..+..++.+.++..+++++.+|--.........+.-++ +.++.+
T Consensus 95 ~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l 173 (326)
T cd02811 95 EDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEEL 173 (326)
T ss_pred cChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHH
Confidence 467755 66677776654 888776654210 01234455566667899999986321110011123345 568888
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.|.+++..+. +.|+|+|.++
T Consensus 174 ~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs 209 (326)
T cd02811 174 VKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA 209 (326)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 8888999996 56557888887665 5999999874
No 264
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.016 Score=50.12 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=71.6
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC---CCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC-CCCH
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANGN-VRHM 92 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg-I~s~ 92 (230)
+.+.||-.|--++-+.++++.-|+.+...|-..+.+--| |.+. .+....|...+..+|+...+|||++-. -...
T Consensus 150 ~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~--~TRntLDi~aV~~~kq~THLPVivDpSH~~Gr 227 (286)
T COG2876 150 RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEK--ATRNTLDISAVPILKQETHLPVIVDPSHATGR 227 (286)
T ss_pred ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccc--cccceechHHHHHHHhhcCCCEEECCCCcccc
Confidence 358999999999889999999999999999988887654 4442 233367999999999999999997632 1122
Q ss_pred HHH-----HHHHHhhCCcEEEEehhhhhCCcc
Q 026945 93 EDV-----QKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 93 ~da-----~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.+. ...+. .||||+|+= .-.||..
T Consensus 228 r~lv~pla~AA~A-aGAdglmiE--VHp~P~~ 256 (286)
T COG2876 228 RDLVEPLAKAAIA-AGADGLMIE--VHPDPEK 256 (286)
T ss_pred hhhHHHHHHHHHh-ccCCeeEEE--ecCCccc
Confidence 222 23333 799999993 4455554
No 265
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.85 E-value=0.019 Score=53.78 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
++.+.++++...+ .++-+.|-++ +. +-++...++|++.|-|..|.-... ..|.+...++...+ ++
T Consensus 145 ~~~l~~l~~~a~~-lGl~~lvEvh---~~----~El~~al~~~a~iiGiNnRdL~t~-----~vd~~~~~~l~~~ip~~~ 211 (454)
T PRK09427 145 DEQYRQLAAVAHS-LNMGVLTEVS---NE----EELERAIALGAKVIGINNRNLRDL-----SIDLNRTRELAPLIPADV 211 (454)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEEC---CH----HHHHHHHhCCCCEEEEeCCCCccc-----eECHHHHHHHHhhCCCCc
Confidence 4455566555533 4555556555 21 224455677999999988876532 46777777777766 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+|+-+||.|++|+..+. . |+|+|.||.++|.+|+.-..+
T Consensus 212 ~~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~~~~~ 251 (454)
T PRK09427 212 IVISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDLELAV 251 (454)
T ss_pred EEEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCHHHHH
Confidence 788899999999999864 3 699999999999999865443
No 266
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.85 E-value=0.008 Score=50.74 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
....++|+|+|-+.+.. ....++++.++..++ +|+++.||| +.+++.+.++ .|+++|.+|..++
T Consensus 123 ~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~-aGa~~vavgs~l~ 187 (213)
T PRK06552 123 VTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFA-AGADAVGIGGELN 187 (213)
T ss_pred HHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHH-CCCcEEEEchHHh
Confidence 44457999999985421 122477899988876 999999999 4899999997 8999999999885
No 267
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.83 E-value=0.019 Score=50.33 Aligned_cols=92 Identities=16% Similarity=0.298 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-----C
Q 026945 7 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~ 79 (230)
+.+.++.+++... .+|.|=++ +.+-++.+.++|+|.|-+-. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566777776653 45666444 34456666789999888532 234555555443 2
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++.+.++||| +++.+.++.+ +|+|.|.+|.....-|++
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATWI 266 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCcc
Confidence 4669999999 9999999886 999999999865544443
No 268
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.81 E-value=0.0064 Score=51.81 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=57.9
Q ss_pred HHHHHHHH-HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 34 DTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 34 ~~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.++- ++..++|.++++|.+.. .++|.+.++.+++..++||+++-|+ +++.+...++. |||+.+|..
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~TG------~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~~--adG~IvgT~ 234 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSRTG------SPPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLKI--ADGVIVGTS 234 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEecccCC------CCCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHHH--cCceEEEEE
Confidence 34455554 77788999999996432 2679999999999999999999999 69999999984 999999974
Q ss_pred h
Q 026945 113 L 113 (230)
Q Consensus 113 ~ 113 (230)
+
T Consensus 235 l 235 (263)
T COG0434 235 L 235 (263)
T ss_pred E
Confidence 4
No 269
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.81 E-value=0.0099 Score=51.24 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|+++|.|-.-... + .-+++.++.+++.+++||+..+.|-++.++.+... .|||+|.+-=+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~----F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSY----F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCc----C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 36789999999999999988653211 2 23689999999999999999999999999999987 89999976555
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 554
No 270
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.80 E-value=0.022 Score=52.52 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.++.+.++.|.++|+|.|.|-.-.. . +..-.+.++++++.. +++|++ |+|.|++++..+++ .|+|+|.+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g-----~-~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~-aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHG-----H-STRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-----C-ChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHH-cCCCEEEEC
Confidence 4578899999999999999854321 1 123468899999877 467555 99999999999886 899999876
No 271
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.79 E-value=0.031 Score=50.84 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEe-cCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+++++.+ .+.||.+|.-...+.++....++.+.+.|.. .+.+| |-+..... .....|+..+..+++..++||+.+
T Consensus 216 ~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~-~~~~ldl~~i~~lk~~~~~PV~~d 293 (360)
T PRK12595 216 ELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKA-TRNTLDISAVPILKQETHLPVMVD 293 (360)
T ss_pred HHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCC-CCCCcCHHHHHHHHHHhCCCEEEe
Confidence 34555543 5899999998877888899999999999985 55555 43221111 123469999999999899999995
Q ss_pred CCCCC----HH--HHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 87 GNVRH----ME--DVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 87 GgI~s----~~--da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
-+=.. .. -+..++. .||||+||=+=. ||...
T Consensus 294 ~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 294 VTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred CCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCCC
Confidence 33211 11 3334454 799999997755 66543
No 272
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.77 E-value=0.037 Score=47.59 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc---cc----HHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR---AD----WNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~---~~----~~~i~~ 74 (230)
..+.+.+.++.|...+++||.+-+..|. +..+..+.++.+.++|++.|.+-+.+...+.+..+. .. .+.|+.
T Consensus 53 ~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~a 132 (243)
T cd00377 53 TLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKA 132 (243)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHH
Confidence 3466777888888888999999999875 446788889999999999999966544332221111 11 223343
Q ss_pred HHhhC----CccEEEcCCC-----CCHHHHHHHH---HhhCCcEEEEe
Q 026945 75 VKNAL----RIPVLANGNV-----RHMEDVQKCL---EETGCEGVLSA 110 (230)
Q Consensus 75 i~~~~----~ipvi~nGgI-----~s~~da~~~l---~~~gadgVmig 110 (230)
+++.. +++|++--|. .+.+++.+.. .+.|||+|++=
T Consensus 133 a~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 133 ARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred HHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 44432 4666665222 3455555333 34899999983
No 273
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.77 E-value=0.016 Score=52.31 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-- 78 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+..+++++++.+++.++.++. | .. ++-|++..+++++.
T Consensus 164 ~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~E-------e--P~-~~~d~~~~~~l~~~~~ 233 (352)
T cd03328 164 DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFE-------E--PV-SSDDLAGLRLVRERGP 233 (352)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhh-------C--CC-ChhhHHHHHHHHhhCC
Confidence 3555667788888776 356666666678888888888888888776664 2 11 23478999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.+..++.++++...+|.|.+
T Consensus 234 ~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 234 AGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred CCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 8899999778999999999998666787754
No 274
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.76 E-value=0.0079 Score=54.61 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=63.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcC------------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKD------------------------------ 61 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~------------------------------ 61 (230)
..|...-+-...+.+.+.+.+++++++|++.|.||- |.+..++
T Consensus 109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (356)
T PF01070_consen 109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN 188 (356)
T ss_dssp TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence 345555554445667788999999999999999982 1000000
Q ss_pred ------------------CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 ------------------GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 ------------------~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+..+|+.|+++++..++|||.=|= .+++|+..+.+ .|+|+|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-~~~~da~~~~~-~G~~~i~vs 253 (356)
T PF01070_consen 189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-LSPEDAKRAVD-AGVDGIDVS 253 (356)
T ss_dssp -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--SHHHHHHHHH-TT-SEEEEE
T ss_pred ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-ccHHHHHHHHh-cCCCEEEec
Confidence 011345799999999999999998654 79999999886 899999886
No 275
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.75 E-value=0.025 Score=49.66 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+..+.++|+|+|-+- ....+.++++.+.. ++|+.++||| +.+.+.++.+ +|+|+|.+|.-.
T Consensus 199 leea~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt 264 (277)
T PRK05742 199 LDELRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhh
Confidence 344566668999999762 12345666666555 7999999999 6999998886 999999999754
Q ss_pred hhCCcc
Q 026945 114 LENPAL 119 (230)
Q Consensus 114 l~nP~l 119 (230)
..-|++
T Consensus 265 ~s~~~~ 270 (277)
T PRK05742 265 KDVKAV 270 (277)
T ss_pred cCCccc
Confidence 444443
No 276
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.74 E-value=0.035 Score=50.02 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=65.3
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC----CCC
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRH 91 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg----I~s 91 (230)
.++.||.+|.-...+.++....++.+...|...+ .+|..++.-........|+..+..+++..+.||++.-+ .+.
T Consensus 198 ~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~ 277 (335)
T PRK08673 198 KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRD 277 (335)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCcccc
Confidence 3589999999887778888889999999998654 44532322101112357899999999988999977432 211
Q ss_pred --HHHHHHHHHhhCCcEEEEeh
Q 026945 92 --MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 92 --~~da~~~l~~~gadgVmigR 111 (230)
+.-+..+.. .||||+||=.
T Consensus 278 ~v~~~a~AAvA-~GAdGliIE~ 298 (335)
T PRK08673 278 LVEPLALAAVA-AGADGLIVEV 298 (335)
T ss_pred chHHHHHHHHH-hCCCEEEEEe
Confidence 234455554 8999999953
No 277
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.72 E-value=0.076 Score=48.68 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 1 MDNLPLVKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
|.|+.-+..-++++++.- ..-++.-+..-.+.+-.+++++.+.+.|+|.|++-.-..- .++..-++.++.+|+
T Consensus 121 lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl----ltP~~ayelVk~iK~ 196 (472)
T COG5016 121 LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL----LTPYEAYELVKAIKK 196 (472)
T ss_pred ccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc----CChHHHHHHHHHHHH
Confidence 456666666677776542 1222222333336678999999999999999998664332 233456899999999
Q ss_pred hCCccEEEcCCCCCH---HHHHHHHHhhCCcEE
Q 026945 78 ALRIPVLANGNVRHM---EDVQKCLEETGCEGV 107 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~---~da~~~l~~~gadgV 107 (230)
.+++||....--.|. -...++++ .|+|++
T Consensus 197 ~~~~pv~lHtH~TsG~a~m~ylkAvE-AGvD~i 228 (472)
T COG5016 197 ELPVPVELHTHATSGMAEMTYLKAVE-AGVDGI 228 (472)
T ss_pred hcCCeeEEecccccchHHHHHHHHHH-hCcchh
Confidence 999999865543332 22334454 799976
No 278
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.69 E-value=0.027 Score=50.35 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.-.+.++.++.. .++ |-+.+|.+ .+..+.+..+.++| +|+|.+..-. +++ ..-++.++.+++..+
T Consensus 67 ~~E~~~sfvrk~k~~-~L~--v~~SvG~t-~e~~~r~~~lv~a~~~~d~i~~D~ah-----g~s-~~~~~~i~~i~~~~p 136 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GLF--ASISVGVK-ACEYEFVTQLAEEALTPEYITIDIAH-----GHS-NSVINMIKHIKTHLP 136 (321)
T ss_pred CHHHHHHHHHhcccc-ccE--EEEEcCCC-HHHHHHHHHHHhcCCCCCEEEEeCcc-----Cch-HHHHHHHHHHHHhCC
Confidence 556555555555332 233 44444444 34456777778888 6998874421 111 224688999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.|++..|+|.|.+++..+++ .|||+|.+|
T Consensus 137 ~~~vi~GnV~t~e~a~~l~~-aGad~I~V~ 165 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELEN-AGADATKVG 165 (321)
T ss_pred CCEEEEecCCCHHHHHHHHH-cCcCEEEEC
Confidence 99999999999999999886 899999876
No 279
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.68 E-value=0.024 Score=47.27 Aligned_cols=37 Identities=14% Similarity=0.479 Sum_probs=30.6
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
+|.+-|||+. +++.++++ .|+|+|.+|++++.+|+..
T Consensus 172 ~i~v~GGI~~-~nv~~l~~-~GaD~vvvgSai~~~~d~~ 208 (220)
T PRK05581 172 LIEVDGGINA-DNIKECAE-AGADVFVAGSAVFGAPDYK 208 (220)
T ss_pred eEEEECCCCH-HHHHHHHH-cCCCEEEEChhhhCCCCHH
Confidence 3567799976 89988886 8999999999999877643
No 280
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.66 E-value=0.05 Score=47.92 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-c--cc-HHHHHHH--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-R--AD-WNAIKAV-- 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~--~~-~~~i~~i-- 75 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.+.++|+..|+|-..+...+.++.+ . .+ -+.+.+|
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~A 136 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAA 136 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHH
Confidence 3455677788888889999999998875 45677888999999999999998765432222211 1 11 2344444
Q ss_pred -HhhC-CccEEEcCCCCC-----HHHHHHH---HHhhCCcEEEE
Q 026945 76 -KNAL-RIPVLANGNVRH-----MEDVQKC---LEETGCEGVLS 109 (230)
Q Consensus 76 -~~~~-~ipvi~nGgI~s-----~~da~~~---l~~~gadgVmi 109 (230)
++.. +.+++.|....+ .+++.+. ..+.|||+|++
T Consensus 137 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi 180 (285)
T TIGR02317 137 AVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP 180 (285)
T ss_pred HHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 3332 345666553322 4455432 23479999998
No 281
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.66 E-value=0.024 Score=51.18 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+-|++..+++++.+++
T Consensus 159 ~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~L~~~~~~ 228 (352)
T cd03325 159 VDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIE-------E--PV-LPENVEALAEIAARTTI 228 (352)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C--CC-CccCHHHHHHHHHhCCC
Confidence 455677888888876 466666666678888889999999888888886 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.++.++..+++...+|.|.+
T Consensus 229 pia~dEs~~~~~~~~~~~~~~~~d~v~~ 256 (352)
T cd03325 229 PIATGERLFSRWDFKELLEDGAVDIIQP 256 (352)
T ss_pred CEEecccccCHHHHHHHHHhCCCCEEec
Confidence 9998778999999999998767887765
No 282
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.64 E-value=0.055 Score=47.84 Aligned_cols=118 Identities=11% Similarity=0.171 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-Cc--cc-HHHHHHHH-
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FR--AD-WNAIKAVK- 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~--~~-~~~i~~i~- 76 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+..|+|-..+...+.+.. +. .. -+.+.+|+
T Consensus 62 ~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~A 141 (292)
T PRK11320 62 TLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKA 141 (292)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHH
Confidence 3456677888888889999999998875 5667888999999999999999765432222221 11 11 23444443
Q ss_pred --hhC-CccEEEcCCCCC-----HHHHHH---HHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 --NAL-RIPVLANGNVRH-----MEDVQK---CLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 --~~~-~ipvi~nGgI~s-----~~da~~---~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.. +.+++.|..... .+++.+ ...+.|||+|++- .+.++.-.++
T Consensus 142 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~--~~~~~~~i~~ 196 (292)
T PRK11320 142 AVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE--AMTELEMYRR 196 (292)
T ss_pred HHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHHH
Confidence 332 455555543322 445542 2234899999983 2444444443
No 283
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.64 E-value=0.016 Score=54.84 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+.++.+.++|++.|+|..-. +.+ ...|+.|+++++.. ++||++ |+|.|.+++..+.+ .|||+|.+|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~-----G~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~-aGad~I~vg 310 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQ-----GNS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLID-AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----CCc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHH-cCCCEEEEC
Confidence 345889999999999999986531 111 22378999999986 588887 99999999999886 899999764
No 284
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=96.62 E-value=0.038 Score=50.17 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+-+++..+++++..+
T Consensus 169 ~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~ 238 (368)
T TIGR02534 169 DPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVELIE-------Q--PT-PAENREALARLTRRFN 238 (368)
T ss_pred CcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcChhheE-------C--CC-CcccHHHHHHHHHhCC
Confidence 4555567788888876 344555445568888899999999988877665 2 11 1346888899999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.-.+.+..++.++++..++|.|.+
T Consensus 239 ~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 239 VPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 99999888999999999998777898754
No 285
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.60 E-value=0.0072 Score=50.56 Aligned_cols=103 Identities=13% Similarity=0.354 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
-++++++++.+++|+.|-+=+. +...+++.+.++|++.|++|..+....
T Consensus 46 ~~~i~~i~~~~~~~~DvHLMv~----~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~ 121 (201)
T PF00834_consen 46 PDIIKAIRKITDLPLDVHLMVE----NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEEL 121 (201)
T ss_dssp HHHHHHHHTTSSSEEEEEEESS----SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGG
T ss_pred HHHHHHHhhcCCCcEEEEeeec----cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHH
Confidence 3568888888889999887432 234677888888888888885422100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|+.|.. -++-|+++++. .++.+..-|||+ .+.+..+.+ .|+|.+.+|+++..
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~-aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVE-AGADIFVAGSAIFK 199 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHH-HT--EEEESHHHHT
T ss_pred HHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHH-cCCCEEEECHHHhC
Confidence 1222222 24445555443 358899999995 567777775 89999999998765
Q ss_pred C
Q 026945 116 N 116 (230)
Q Consensus 116 n 116 (230)
+
T Consensus 200 ~ 200 (201)
T PF00834_consen 200 A 200 (201)
T ss_dssp S
T ss_pred C
Confidence 3
No 286
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.60 E-value=0.042 Score=50.39 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-|++..+++++.++
T Consensus 187 ~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~L~~~~~ 256 (385)
T cd03326 187 PLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYE-------E--PG-DPLDYALQAELADHYD 256 (385)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCCEEE-------C--CC-CccCHHHHHHHHhhCC
Confidence 3455567788888776 466666666678888889999999888888776 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCC----cEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGC----EGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~ga----dgVmi 109 (230)
+||.+.=.+.++.++.++++...+ |.|.+
T Consensus 257 iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 257 GPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred CCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 999998889999999999985444 76654
No 287
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.58 E-value=0.016 Score=51.89 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC--CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~--~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+...+.++.++. ..+.|-+.++.+ .+..+-+..|.++|+ |.|.|..-... ...-.+.|+++++..+
T Consensus 70 ~~e~~~~~~r~~~~---~~l~v~~~vg~~-~~~~~~~~~Lv~ag~~~d~i~iD~a~gh------~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMHE---QGLIASISVGVK-DDEYDFVDQLAAEGLTPEYITIDIAHGH------SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhccc---cccEEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCc------hHHHHHHHHHHHhhCC
Confidence 55555555544422 123444444443 345677888888855 99999443211 0223577999999886
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||++ |+|.|.+++..+.+ .|||++.+|
T Consensus 140 ~~~vi~-g~V~t~e~a~~l~~-aGad~i~vg 168 (326)
T PRK05458 140 ETFVIA-GNVGTPEAVRELEN-AGADATKVG 168 (326)
T ss_pred CCeEEE-EecCCHHHHHHHHH-cCcCEEEEC
Confidence 66555 88999999998886 899999876
No 288
>PRK14017 galactonate dehydratase; Provisional
Probab=96.58 E-value=0.03 Score=51.14 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+.+++..+++++.+++
T Consensus 160 ~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~L~~~~~~ 229 (382)
T PRK14017 160 VDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPMFIE-------E--PV-LPENAEALPEIAAQTSI 229 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCCeEE-------C--CC-CcCCHHHHHHHHhcCCC
Confidence 355677888888876 466666666678888899999999998888876 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.++.++..+++...+|.|.+
T Consensus 230 pIa~dEs~~~~~~~~~li~~~a~d~v~~ 257 (382)
T PRK14017 230 PIATGERLFSRWDFKRVLEAGGVDIIQP 257 (382)
T ss_pred CEEeCCccCCHHHHHHHHHcCCCCeEec
Confidence 9999888999999999998766887765
No 289
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.57 E-value=0.0036 Score=53.10 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 64 ~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
..|..-+.++++++.. |++..|||+|++.+.++.+ .|||.|..|.-+..+|.-+.+
T Consensus 177 ~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~-agAD~IVtG~iiee~~~~~~~ 232 (240)
T COG1646 177 GDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAE-AGADTIVTGTIIEEDPDKALE 232 (240)
T ss_pred CCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHH-cCCCEEEECceeecCHHHHHH
Confidence 3455667777776654 9999999999999999886 899999999999999955443
No 290
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.57 E-value=0.038 Score=50.03 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEecCCCCCcCCC-CCcccHHHHHHHHhhCCccEEEcC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+++++.+ ++.||.+|.-...+.+++...++.+.+.|.. .+-+|..++.-..+| ....|+..+..+++..++|||++-
T Consensus 200 LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dp 278 (352)
T PRK13396 200 LLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDP 278 (352)
T ss_pred HHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECC
Confidence 3555543 5899999998887889999999999999985 455565332211122 235799999999998899998763
Q ss_pred ----CCC--CHHHHHHHHHhhCCcEEEEe
Q 026945 88 ----NVR--HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 88 ----gI~--s~~da~~~l~~~gadgVmig 110 (230)
|.+ ++.-+..++. .||||+||=
T Consensus 279 sH~~G~sd~~~~~a~AAva-~GAdGliIE 306 (352)
T PRK13396 279 SHGTGKSEYVPSMAMAAIA-AGTDSLMIE 306 (352)
T ss_pred cccCCcHHHHHHHHHHHHh-hCCCeEEEE
Confidence 221 2333344454 799999994
No 291
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.55 E-value=0.051 Score=47.87 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC---C---Cccc----HHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---K---FRAD----WNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~---~---~~~~----~~~i~ 73 (230)
.+.+.+.++.|..++++||++-+-.|-+..+....++.+.++|+..|++-..+...+++. . .-.. .+.|+
T Consensus 63 ~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 63 WTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 455666788888888999999998876677888999999999999999955433222111 1 0111 23344
Q ss_pred HHHhh-C--CccEEEcCCC----CCHHHHHHH---HHhhCCcEEEEe
Q 026945 74 AVKNA-L--RIPVLANGNV----RHMEDVQKC---LEETGCEGVLSA 110 (230)
Q Consensus 74 ~i~~~-~--~ipvi~nGgI----~s~~da~~~---l~~~gadgVmig 110 (230)
.+++. . +++|++-=|. ...+++.+. ..+.|||+|++=
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 44443 2 4677665332 235555432 234899999984
No 292
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=96.54 E-value=0.003 Score=51.69 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.....-.+.+++..+|++.+-+. .-...++++++.+++|||+.|=|.+.+++.++|+ .||++|.-+..
T Consensus 104 ~al~~~~~~i~~~~PD~vEilPg-----------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~-aGa~aVSTS~~ 171 (175)
T PF04309_consen 104 SALETGIKQIEQSKPDAVEILPG-----------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALK-AGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESC-----------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCC-TTCEEEEE--H
T ss_pred HHHHHHHHHHhhcCCCEEEEchH-----------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHH-cCCEEEEcCCh
Confidence 33444566777888899887553 2236788888889999999999999999999997 89999998765
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
-|+
T Consensus 172 ~LW 174 (175)
T PF04309_consen 172 ELW 174 (175)
T ss_dssp HHC
T ss_pred Hhc
Confidence 443
No 293
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.49 E-value=0.034 Score=50.02 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-|++..+++++.+++
T Consensus 154 ~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~~ 223 (341)
T cd03327 154 LRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELRWIE-------E--PL-IPDDIEGYAELKKATGI 223 (341)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCcccc-------C--CC-CccCHHHHHHHHhcCCC
Confidence 355667788888876 356666666668888888999999888877665 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.+..++.++++...+|.|.+
T Consensus 224 pIa~gE~~~~~~~~~~~i~~~a~d~i~~ 251 (341)
T cd03327 224 PISTGEHEYTVYGFKRLLEGRAVDILQP 251 (341)
T ss_pred CeEeccCccCHHHHHHHHHcCCCCEEec
Confidence 9998778999999999998777887765
No 294
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.48 E-value=0.034 Score=46.38 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=63.7
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
++..=+|. .+.+++.++++.+.+.|+..+.|.-||.. -.+.|+.+++..+--+++.|.|.|.++++++++
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t~~---------a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRTPN---------ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTSTT---------HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCCcc---------HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH
Confidence 34444675 45688999999999999999999887642 258899898887767899999999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccch
Q 026945 101 ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.||+.++.= -.||.+.+..
T Consensus 79 -aGA~FivSP---~~~~~v~~~~ 97 (196)
T PF01081_consen 79 -AGAQFIVSP---GFDPEVIEYA 97 (196)
T ss_dssp -HT-SEEEES---S--HHHHHHH
T ss_pred -cCCCEEECC---CCCHHHHHHH
Confidence 899988762 2455555543
No 295
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.46 E-value=0.032 Score=47.66 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC-CCc---------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-DEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~-~~~--------------------------- 60 (230)
.+++++++.+++|+.|-+=+ .+...+++.+.++|++.|++|.-.. ..-
T Consensus 49 ~~i~~ir~~t~~~~DvHLMv----~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l 124 (229)
T PRK09722 49 FFVSQVKKLASKPLDVHLMV----TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESI 124 (229)
T ss_pred HHHHHHHhcCCCCeEEEEEe----cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 56788887777888776643 3456788999999999999997521 100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|+.|.. -++-|+++++. .++.+.+-|||+ .+.+.++.+ .|||.+.+|++++
T Consensus 125 ~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~-aGad~~V~Gss~i 201 (229)
T PRK09722 125 KYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME-AGADVFIVGTSGL 201 (229)
T ss_pred HHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEEChHHH
Confidence 0111111 12234444432 236688999996 778877775 8999999998633
No 296
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=96.44 E-value=0.021 Score=47.44 Aligned_cols=83 Identities=33% Similarity=0.350 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.++..+.++.+...--..+.+-...+- +...++|++.+..+.+...-||+..|||.-.||.+.+.. .||+||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aV---Gt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAV---GTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccc---ccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeee
Confidence 34567777777766544323333222211 122357899999999988899999999999999998886 89999999
Q ss_pred ehhhhhC
Q 026945 110 AESLLEN 116 (230)
Q Consensus 110 gR~~l~n 116 (230)
|+++-..
T Consensus 210 aTalh~G 216 (229)
T COG1411 210 ATALHEG 216 (229)
T ss_pred hhhhhcC
Confidence 9977543
No 297
>PRK06852 aldolase; Validated
Probab=96.43 E-value=0.064 Score=47.62 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=60.4
Q ss_pred cCCceEEEE--ECCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCC
Q 026945 17 NLNVPVSCK--IRVF-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN 88 (230)
Q Consensus 17 ~~~~pvsvK--iR~g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGg 88 (230)
.+++|+.+= -|-. .+.+...-.++...+.|+|.|-+---+.. +.-+.+.++++.+.+ ++||+..||
T Consensus 165 ~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~------~~g~~e~f~~vv~~~g~vpVviaGG 238 (304)
T PRK06852 165 KHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKE------GANPAELFKEAVLAAGRTKVVCAGG 238 (304)
T ss_pred HhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcC------CCCCHHHHHHHHHhCCCCcEEEeCC
Confidence 358887652 2221 12233455667788899999876432211 113457888888888 899888887
Q ss_pred CC-CHHHHHH----HHHhhCCcEEEEehhhhhCC
Q 026945 89 VR-HMEDVQK----CLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 89 I~-s~~da~~----~l~~~gadgVmigR~~l~nP 117 (230)
=+ +.+++.+ +++..|+.||++||-....|
T Consensus 239 ~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~ 272 (304)
T PRK06852 239 SSTDPEEFLKQLYEQIHISGASGNATGRNIHQKP 272 (304)
T ss_pred CCCCHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence 65 4445544 44447999999999665543
No 298
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.42 E-value=0.057 Score=50.01 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+-+++..+++++.+
T Consensus 222 ~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iE-------E--P~-~~~d~~~~~~L~~~~~ 291 (415)
T cd03324 222 DLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPWWIE-------E--PT-SPDDILGHAAIRKALA 291 (415)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCCEEE-------C--CC-CCCcHHHHHHHHHhcc
Confidence 3455567788888876 355666666678888899999999998888776 2 11 234788899999988
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.-.+.+..++.++++...+|.+.+
T Consensus 292 ~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 292 PLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred cCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 699988778999999999998666787754
No 299
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0075 Score=55.10 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHH---HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 36 IKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~---i~~~~~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
.+-++.|.++|+|.+-|--. |.+-. -.|.+.-..+.+ .+...++|||+-|||.+..++.++|. .|++.
T Consensus 303 ~~qa~nLI~aGaDgLrVGMGsGSiCiTqevm--a~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAst 379 (503)
T KOG2550|consen 303 KEQAANLIAAGADGLRVGMGSGSICITQKVM--ACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGAST 379 (503)
T ss_pred HHHHHHHHHccCceeEeccccCceeeeceee--eccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCchh
Confidence 35677788999999988533 22211 112233334444 44557899999999999999999997 89999
Q ss_pred EEEehh
Q 026945 107 VLSAES 112 (230)
Q Consensus 107 VmigR~ 112 (230)
||+|-=
T Consensus 380 VMmG~l 385 (503)
T KOG2550|consen 380 VMMGGL 385 (503)
T ss_pred heecce
Confidence 999953
No 300
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=96.34 E-value=0.053 Score=49.93 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
...+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-+++..+++++.+++||
T Consensus 191 ~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~L~~~~~iPI 260 (404)
T PRK15072 191 FVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------D--PT-PAENQEAFRLIRQHTTTPL 260 (404)
T ss_pred HHHHHHHHHHhhhCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C--CC-CccCHHHHHHHHhcCCCCE
Confidence 3457899999887 466777777779999999999999999988887 2 11 2347899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.=.+.++.++.++++...+|.|.+
T Consensus 261 a~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 261 AVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred EeCcCccCHHHHHHHHHcCCCCEEec
Confidence 99878999999999998767888765
No 301
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.33 E-value=0.08 Score=47.91 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.++ +.+.+-..-+|+..++.++++.+++.|+.+|. + .. ++-+++..+++++..++
T Consensus 171 ~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~~ 240 (365)
T cd03318 171 PADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIE-------Q--PV-PRENLDGLARLRSRNRV 240 (365)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceee-------C--CC-CcccHHHHHHHHhhcCC
Confidence 4445667777777663 44555555567878888888888888877665 2 11 13378889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.+.+++.++++...+|.+.+
T Consensus 241 pia~dE~~~~~~~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 241 PIMADESVSGPADAFELARRGAADVFSL 268 (365)
T ss_pred CEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence 9998777999999999998766888744
No 302
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.31 E-value=0.032 Score=48.83 Aligned_cols=63 Identities=13% Similarity=0.304 Sum_probs=44.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccH-HHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.++|+|+|-+...... +. +.++.++.. .++|+++.||| +++.+.++.+ +|+|+|++|.-
T Consensus 196 a~~A~~~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 196 ALAAAEAGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred HHHHHHcCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChh
Confidence 34455899999998654322 12 333434443 26999999999 7999999886 89999977653
No 303
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.31 E-value=0.05 Score=50.04 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+|+.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ ++.++. | .. + +++..+++++.+++
T Consensus 196 ~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~~~l~~-~l~~iE-------e--P~--~-d~~~~~~L~~~~~~ 262 (395)
T cd03323 196 PGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLAKELEG-VLAYLE-------D--PC--G-GREGMAEFRRATGL 262 (395)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHHHhcCc-CCCEEE-------C--CC--C-CHHHHHHHHHhcCC
Confidence 3455566777777765 34444444556777888888888888 777665 2 12 3 88999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
||.++=.+.+..++.++++...+|.+.
T Consensus 263 PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 263 PLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred CEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 999877899999999999876678773
No 304
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.29 E-value=0.053 Score=46.58 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEEC-----CC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIR-----VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR-----~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.++...+.+++++++.+ .++.|=-| .+ ...+++++-++.+.++|+|.+.+++.+ +.+.+++
T Consensus 122 ~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~ 190 (243)
T cd00377 122 PIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRA 190 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHH
Confidence 45556666777766543 24444444 33 357889999999999999999998743 5688999
Q ss_pred HHhhCCccEEEcC--CC--CCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 75 VKNALRIPVLANG--NV--RHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 75 i~~~~~ipvi~nG--gI--~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+..+.||+++. +- .+.+++. +.|+..|.+|-.++
T Consensus 191 ~~~~~~~Pl~~~~~~~~~~~~~~~l~----~lG~~~v~~~~~~~ 230 (243)
T cd00377 191 FAEAPDVPLNVNMTPGGNLLTVAELA----ELGVRRVSYGLALL 230 (243)
T ss_pred HHhcCCCCEEEEecCCCCCCCHHHHH----HCCCeEEEEChHHH
Confidence 9999999988763 22 3444443 47999999876543
No 305
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.27 E-value=0.092 Score=48.56 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=66.5
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC---Cc-CC----CCCcccHHHHHHHHhhC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---EK-DG----KKFRADWNAIKAVKNAL 79 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~---~~-~~----~~~~~~~~~i~~i~~~~ 79 (230)
+.++.+.+.. +.||.+-+-...+.++..++++.++++|+|+|.+----.. .+ .+ ..+..-.+.++.+++.+
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc
Confidence 3344444444 4777766653336788999999999999999998532211 11 00 11112234566667777
Q ss_pred CccEE--EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVL--ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi--~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||+ ...++.+..++.+.+++.|+|||.+
T Consensus 168 ~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 168 RLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 89987 5677778888888888899999984
No 306
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=96.26 E-value=0.07 Score=48.38 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=73.9
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.+.++++++.+ ++.+.+-..-+|+.+++..+++.+++.++.++. | .. ++-+++..+++++..++||.+
T Consensus 150 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~L~~~~~~pia~ 219 (361)
T cd03322 150 PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWME-------D--PT-PAENQEAFRLIRQHTATPLAV 219 (361)
T ss_pred HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C--CC-CcccHHHHHHHHhcCCCCEEe
Confidence 46678888876 366777667678989999999999999988886 2 11 234789999999999999998
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.++.++..+++...+|.+.+
T Consensus 220 gE~~~~~~~~~~~i~~~a~di~~~ 243 (361)
T cd03322 220 GEVFNSIWDWQNLIQERLIDYIRT 243 (361)
T ss_pred ccCCcCHHHHHHHHHhCCCCEEec
Confidence 778999999999998766777754
No 307
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.22 E-value=0.064 Score=44.98 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=69.0
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.+++.++++.+.+.|++.+.|.-|+.. -.+.|+++++..+--+++.|.|.|.++++++.+
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t~~---------a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRTPV---------ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444665 45688999999999999999999876532 357899998877655788899999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccchh
Q 026945 101 ETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.|++.++. =+ .||.+....+
T Consensus 79 -aGA~Fivs-P~--~~~~v~~~~~ 98 (204)
T TIGR01182 79 -AGAQFIVS-PG--LTPELAKHAQ 98 (204)
T ss_pred -cCCCEEEC-CC--CCHHHHHHHH
Confidence 89998854 22 3666665433
No 308
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.20 E-value=0.13 Score=45.51 Aligned_cols=100 Identities=22% Similarity=0.335 Sum_probs=64.0
Q ss_pred HHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--CcCCC------CCcccHHHHHHHHhhCCc
Q 026945 11 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--EKDGK------KFRADWNAIKAVKNALRI 81 (230)
Q Consensus 11 v~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--~~~~~------~~~~~~~~i~~i~~~~~i 81 (230)
+..+.+.. +.|+.+-+--..+.++..++++.+++.|+++|.+----.. ...+. .+..-.+.++.+++.+++
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI 169 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence 44444444 5788776644347788999999999999999988432111 10110 011123456667777789
Q ss_pred cEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++ .-++.+..++.+.+.+.|+|+|.+.
T Consensus 170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 170 PVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 9874 4455566677777777999999764
No 309
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.16 E-value=0.07 Score=44.65 Aligned_cols=89 Identities=18% Similarity=0.311 Sum_probs=69.2
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.+++.++++.+.+.|+..|.|.-+|.. -.+.|+++++..+--+++.|-|.|.++++++.+
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp~---------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTPA---------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 44444664 46789999999999999999999876542 357899998877666789999999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccch
Q 026945 101 ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.|++.++.= -.||.+.+..
T Consensus 75 -aGA~FivSP---~~~~~vi~~a 93 (201)
T PRK06015 75 -AGSRFIVSP---GTTQELLAAA 93 (201)
T ss_pred -cCCCEEECC---CCCHHHHHHH
Confidence 899988762 2456555543
No 310
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.14 E-value=0.086 Score=44.46 Aligned_cols=97 Identities=28% Similarity=0.377 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+.+. ++..=+|. .+.+++.++++.+.+.|++.|.|.-++. .-.+.|+.+++..+--+++.|-
T Consensus 7 ~~~~~l~~~---~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGT 73 (212)
T PRK05718 7 SIEEILRAG---PVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGT 73 (212)
T ss_pred HHHHHHHHC---CEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEee
Confidence 455555443 33333664 5678999999999999999999985433 2357889998877666789999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
|.+.++++.+++ .|++.++. --.||.+.+.
T Consensus 74 Vl~~~~a~~a~~-aGA~Fivs---P~~~~~vi~~ 103 (212)
T PRK05718 74 VLNPEQLAQAIE-AGAQFIVS---PGLTPPLLKA 103 (212)
T ss_pred ccCHHHHHHHHH-cCCCEEEC---CCCCHHHHHH
Confidence 999999999997 89998876 2245555543
No 311
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=96.12 E-value=0.11 Score=46.54 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.-.+.++++++.++ +.+.+-..-+|+.++++++++.+ ++.++.+|. | +-.+++..+++++.+
T Consensus 116 ~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l~~iE-------q-----P~~~~~~la~Lr~~~ 183 (327)
T PRK02901 116 TLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPLEYVE-------Q-----PCATVEELAELRRRV 183 (327)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCceEEe-------c-----CCCCHHHHHHHHHhC
Confidence 34556677788877763 44555555568888899999998 667777775 2 112478888999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.=.+++..|..++++..++|.+.+
T Consensus 184 ~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 184 GVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999998778999999999998888898876
No 312
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.10 E-value=0.031 Score=46.77 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC----------cCCCC--------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----------KDGKK-------------- 64 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~----------~~~~~-------------- 64 (230)
++++++++...+|+.+|+=... .....+++.+.++|+|++++|.-.... +++..
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~--~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIP--NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE 122 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccH--HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence 5677777766777778875211 122334577888999999999754110 00000
Q ss_pred -------------------C----cccHHHHHHHHhhCCcc-EEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 65 -------------------F----RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 65 -------------------~----~~~~~~i~~i~~~~~ip-vi~nGgI~s~-~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
| +...+.++++++..+-+ .+..|||+.. .++..+++ .|+|++++||+++..++
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~-aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIK-AGADYVIVGRSIYNAAD 200 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHH-cCCCEEEECcccCCCCC
Confidence 0 00112334454444332 3377898753 24667775 89999999998776654
No 313
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.08 E-value=0.03 Score=52.40 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+-++.+.++|++.|.|..-... + ..-++.|+++++.. ++||++ |+|.|++++..+.+ .|||+|-+|
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~---~---~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~-aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH---S---IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALID-AGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc---H---hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 35677888999999999998553221 1 23468899999884 799998 99999999999986 899999755
No 314
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.07 E-value=0.027 Score=53.50 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+-++.|.++|+|.|.+-.-. +. ...-|+.++++++..+ .+|++ |+|.|.+++..+.+ .|||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~-aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQ-AGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHH-cCcCEEEEC
Confidence 356788999999999999996621 21 1235899999999875 66655 99999999999997 899999765
No 315
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=96.06 E-value=0.15 Score=45.45 Aligned_cols=96 Identities=9% Similarity=0.180 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ .++.+|. | .. +.-+++..+.+++.
T Consensus 146 ~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~ 215 (320)
T PRK02714 146 LEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIE-------Q--PL-PPDQFDEMLQLSQD 215 (320)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccEEE-------C--CC-CcccHHHHHHHHHh
Confidence 455567777887765 45566666667888888888888877 4666665 2 11 13378899999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.++.|+..+++...+|.|.+
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 9999999889999999999998655666544
No 316
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.05 E-value=0.042 Score=45.39 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=58.6
Q ss_pred HHHHHHhhcCCceEE--EEECCCC-C--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVS--CKIRVFP-N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvs--vKiR~g~-~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+-|+++++.+++||. +|-.... + ..-+.+-++.+.++|++.|.+.+-.+. + +..-.+.++++++.. .++
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~-R----p~~l~~li~~i~~~~-~l~ 95 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRP-R----PETLEELIREIKEKY-QLV 95 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS------SS-HHHHHHHHHHCT-SEE
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCC-C----CcCHHHHHHHHHHhC-cEE
Confidence 347789999999984 4543221 1 224667788999999999999874332 1 133568899999876 444
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+ .||.|.+++..+.+ .|+|.|.-
T Consensus 96 M--ADist~ee~~~A~~-~G~D~I~T 118 (192)
T PF04131_consen 96 M--ADISTLEEAINAAE-LGFDIIGT 118 (192)
T ss_dssp E--EE-SSHHHHHHHHH-TT-SEEE-
T ss_pred e--eecCCHHHHHHHHH-cCCCEEEc
Confidence 4 69999999999997 89997643
No 317
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=96.04 E-value=0.13 Score=43.32 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++.|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------E--PC-APDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------C--CC-CccCHHHHHHHHhhCCCCEEe
Confidence 35677777765 466777777778989999999999998888886 2 11 134688899999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.++++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 667899999988888667787755
No 318
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=96.04 E-value=0.087 Score=48.47 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++++ ++.+.+-..-+|+..+++++++.+++.|+.++. | .. .+-|++..+++++.+++
T Consensus 191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE-------E--Pl-~~~d~~~~~~L~~~~~~ 260 (394)
T PRK15440 191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE-------E--CL-PPDDYWGYRELKRNAPA 260 (394)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee-------C--CC-CcccHHHHHHHHHhCCC
Confidence 355678889999887 577888877789999999999999999988886 2 11 24478899999999875
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||. +.=.+.|..++.++++...+|.+.+
T Consensus 261 ~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 261 GMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred CCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 543 3335779999999998666777654
No 319
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.03 E-value=0.12 Score=45.54 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CC-C-C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+..+++++.... .+++|-.=+- ++ . + ..+..+..+-+++.|+|.+.|.-.|.-..+.. +..|++.+
T Consensus 114 i~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l 191 (283)
T PRK07998 114 IAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLL 191 (283)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHHHH
Confidence 3455555555544 5777755442 21 1 1 12344555566778999998876665543322 45789999
Q ss_pred HHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhh
Q 026945 73 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~l 114 (230)
++|++.+++|++.-||=..+ +++.++++ .|+..|=|++.+.
T Consensus 192 ~~I~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~Tel~ 233 (283)
T PRK07998 192 KRIAEVSPVPLVIHGGSGIPPEILRSFVN-YKVAKVNIASDLR 233 (283)
T ss_pred HHHHhhCCCCEEEeCCCCCCHHHHHHHHH-cCCcEEEECHHHH
Confidence 99999999999999986655 66677775 8999999988654
No 320
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.02 E-value=0.079 Score=44.43 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=67.5
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCL 99 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l 99 (230)
|+..=+|. .+.++..++++.+.+.|+..|.|.-++.. ..+.++.+++..+.+ +++.|.|.+.+++..++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSPD---------PFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 44444775 35688999999999999999999765432 346889998887754 78999999999999999
Q ss_pred HhhCCcEEEEehhhhhCCcccc
Q 026945 100 EETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 100 ~~~gadgVmigR~~l~nP~lf~ 121 (230)
+ .|+|+++.+- .||.+..
T Consensus 81 ~-aGA~fivsp~---~~~~v~~ 98 (206)
T PRK09140 81 D-AGGRLIVTPN---TDPEVIR 98 (206)
T ss_pred H-cCCCEEECCC---CCHHHHH
Confidence 7 8999999953 4444443
No 321
>PRK08185 hypothetical protein; Provisional
Probab=96.00 E-value=0.051 Score=47.81 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEE-----ecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEE
Q 026945 36 IKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLS 109 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmi 109 (230)
.+..+-+++.|+|++.+ ||-.... ..+..+++.+++|++.+++|+++-||...+ +++.++.+ .|+.-|=|
T Consensus 152 eea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~-~GI~KiNi 227 (283)
T PRK08185 152 EQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQ-LGVGKINI 227 (283)
T ss_pred HHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHH-CCCeEEEe
Confidence 34444455669999999 6654331 134578999999999999999999998665 55556665 78888877
Q ss_pred ehhh
Q 026945 110 AESL 113 (230)
Q Consensus 110 gR~~ 113 (230)
++.+
T Consensus 228 ~T~l 231 (283)
T PRK08185 228 SSDM 231 (283)
T ss_pred ChHH
Confidence 6644
No 322
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.99 E-value=0.022 Score=53.65 Aligned_cols=69 Identities=33% Similarity=0.387 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+..+.++.|.++|++.|.+-.-.. .+ ..-.+.+++|++.. ++|||+ |.+-|.+.+..+.+ .|||+|-+|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g-----~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~-~G~d~i~vg 294 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHG-----HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLE-AGANIIKVG 294 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCC-----Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHH-hCCCEEEEC
Confidence 566889999999999999844221 11 22457889998875 799999 88999999999886 899998654
No 323
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.98 E-value=0.13 Score=45.21 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCc-CC----CCCcccHHHHHHHHhhCC
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEK-DG----KKFRADWNAIKAVKNALR 80 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~-~~----~~~~~~~~~i~~i~~~~~ 80 (230)
.+.+.......+.|+.+-+. |.+.++..+.++.++++| +++|.+---....+ .+ .....-.+.++++++.++
T Consensus 79 ~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 79 LEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 33444444445678888775 456788999999999874 99998853222111 01 111223567788888888
Q ss_pred ccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||.+ +.++.+..++.+.+++.|+|++.+.
T Consensus 158 ~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 158 VPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred CCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 89874 4445555566667777999999874
No 324
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.97 E-value=0.16 Score=44.25 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCccEEEcCCCC-CHHHHHHHHH---hhCCcEEEEehhhhhC
Q 026945 70 NAIKAVKNALRIPVLANGNVR-HMEDVQKCLE---ETGCEGVLSAESLLEN 116 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~-s~~da~~~l~---~~gadgVmigR~~l~n 116 (230)
+.++++.+..++||+..||=+ +.+++.++.+ +.|+.||++||-....
T Consensus 182 ~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 182 EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 677888888999999888865 4444544333 2899999999965544
No 325
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=95.96 E-value=0.12 Score=45.83 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+++.-.+.++++++.++ +.+.+-..-+|+..++.++++.+++ .++.+|. | .. + .++..+++++
T Consensus 136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q--P~--~-~~~~~~~l~~ 203 (307)
T TIGR01927 136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLE-------E--PL--P-DADEMSAFSE 203 (307)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEe-------C--CC--C-CHHHHHHHHH
Confidence 45566677888887663 3444444446888889999999986 6777776 2 11 2 2378888999
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+++||.+.=.+.+..|+.++++...+|.|.+
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 99999999889999999999998655676654
No 326
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.95 E-value=0.23 Score=43.93 Aligned_cols=119 Identities=9% Similarity=0.082 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-Cc--cc-HHHHHHH---
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FR--AD-WNAIKAV--- 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~--~~-~~~i~~i--- 75 (230)
.+.+.+.++.|..++++||++-+-.|. +..+....++.++++|+..|++-.-+...+.+.. +. .+ -+.+.+|
T Consensus 62 ~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa 141 (294)
T TIGR02319 62 VSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAA 141 (294)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHH
Confidence 455677788888889999999998875 3455778899999999999999775432222221 11 11 2344444
Q ss_pred HhhC-CccEEEcCCCC-----CHHHHHHH---HHhhCCcEEEEehhhhhCCccccchh
Q 026945 76 KNAL-RIPVLANGNVR-----HMEDVQKC---LEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ~~~~-~ipvi~nGgI~-----s~~da~~~---l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.. +.+++.|.... ..+++.+. ..+.|||+|.+- | +.++.-..++.
T Consensus 142 ~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~-~-~~~~~ei~~~~ 197 (294)
T TIGR02319 142 VEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE-A-MLDVEEMKRVR 197 (294)
T ss_pred HHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec-C-CCCHHHHHHHH
Confidence 3332 24455554322 24444422 234899999993 2 45555544443
No 327
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.95 E-value=0.089 Score=43.27 Aligned_cols=88 Identities=19% Similarity=0.360 Sum_probs=67.0
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 44444664 4568899999999999999999976532 2456889998887655678899999999999987
Q ss_pred hhCCcEEEEehhhhhCCccccc
Q 026945 101 ETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~ 122 (230)
.|+|+++.+- .+|.+...
T Consensus 75 -~Ga~~i~~p~---~~~~~~~~ 92 (190)
T cd00452 75 -AGAQFIVSPG---LDPEVVKA 92 (190)
T ss_pred -cCCCEEEcCC---CCHHHHHH
Confidence 8999998763 34555443
No 328
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.90 E-value=0.18 Score=44.45 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCCC--C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVFP--N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g~--~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+..+++++-... .+++|-.=+ ++|- + ..+..+..+-+++.|+|.+.|.-.|.-..+...+..||+.+
T Consensus 117 i~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L 195 (285)
T PRK07709 117 VETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEM 195 (285)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHH
Confidence 3455555555543 366666554 2221 1 12334444455667999998876665544333456799999
Q ss_pred HHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 73 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 196 ~~I~~~~~iPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 236 (285)
T PRK07709 196 EQVRDFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 236 (285)
T ss_pred HHHHHHHCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 99999999999999987665 66667775 788888776543
No 329
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.90 E-value=0.037 Score=52.36 Aligned_cols=109 Identities=18% Similarity=0.333 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCceE-EEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcC--------------------CC-CC
Q 026945 9 SLVEKLALNLNVPV-SCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD--------------------GK-KF 65 (230)
Q Consensus 9 eiv~~v~~~~~~pv-svKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~--------------------~~-~~ 65 (230)
++|+.++.. +-|| .|-|..| ++.+++.++++.|-..|+.++.+-+.+.+|.+ |. .|
T Consensus 112 rLv~kara~-G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGG 190 (717)
T COG4981 112 RLVQKARAS-GAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGG 190 (717)
T ss_pred HHHHHHHhc-CCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCC
Confidence 456666543 3444 2444444 57789999999999999999999877644320 11 12
Q ss_pred cccHHH--------HHHHHhhCCccEEEcCCCCCHHHHHHHHHh-----h-----CCcEEEEehhhhhCCc
Q 026945 66 RADWNA--------IKAVKNALRIPVLANGNVRHMEDVQKCLEE-----T-----GCEGVLSAESLLENPA 118 (230)
Q Consensus 66 ~~~~~~--------i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-----~-----gadgVmigR~~l~nP~ 118 (230)
.-.|+- -.+++..-+|-+++.|||.|++++...|.- . .+||+.+|.++|.--.
T Consensus 191 HHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 191 HHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred ccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 223442 245666678999999999999999988831 1 2799999999997544
No 330
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.86 E-value=0.11 Score=46.63 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~--~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++.++.....-++| .+|.. ++..+.++.|.+ +|+|.|+|..-. +++ ..-.+.|+.+++..+
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~v--avG~~-~~d~er~~~L~~~~~g~D~iviD~Ah-----Ghs-~~~i~~ik~ik~~~P 150 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMV--STGTS-DADFEKTKQILALSPALNFICIDVAN-----GYS-EHFVQFVAKAREAWP 150 (346)
T ss_pred CHHHHHHHHHhccccccceEEE--EecCC-HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHHhCC
Confidence 3455556666665443222333 23322 344566667766 599999985432 111 223578999999874
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++||+ |+|-|++-++.+++ .|||+|=+|=
T Consensus 151 ~~~vIa-GNV~T~e~a~~Li~-aGAD~vKVGI 180 (346)
T PRK05096 151 DKTICA-GNVVTGEMVEELIL-SGADIVKVGI 180 (346)
T ss_pred CCcEEE-ecccCHHHHHHHHH-cCCCEEEEcc
Confidence 66555 99999999998886 8999986553
No 331
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=95.83 E-value=0.13 Score=47.96 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc----HHHHHHHHhhC
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNAL 79 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~ 79 (230)
+.-.+.++++++.+ ++.+.+-..-+|+.++++.+++.+++. +.+|. | .. ++-+ ++..+++++.+
T Consensus 210 ~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~~~~Le~~-~~~iE-------e--Pv-~~~d~~~~~~~la~Lr~~~ 278 (441)
T TIGR03247 210 EEEIEAVTALAKRFPQARITLDPNGAWSLDEAIALCKDLKGV-LAYAE-------D--PC-GAEQGYSGREVMAEFRRAT 278 (441)
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhh-hceEe-------C--CC-CcccccchHHHHHHHHHhC
Confidence 44456666666654 234444444457777777777777765 54433 2 11 1224 78899999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
++||.+.=.+.++.++..+++...+|.+.
T Consensus 279 ~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 279 GLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred CCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 99999877899999999999876777754
No 332
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.83 E-value=0.14 Score=46.18 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH--cCCCEEEEecC-CCCCcCC-------CCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHHH-
Q 026945 33 QDTIKYAKMLED--AGCSLLAVHGR-TRDEKDG-------KKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLE- 100 (230)
Q Consensus 33 ~~~~~~a~~l~~--~G~~~i~vh~r-t~~~~~~-------~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l~- 100 (230)
+.....++.+.+ .|+|.+-+--- ......+ |+...-.+.++++.+..++|++ ++||+ +.+++.+.++
T Consensus 184 ~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~ 262 (340)
T PRK12858 184 EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEF 262 (340)
T ss_pred HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHH
Confidence 345677788884 99999876321 1000001 1111112567777888899976 47888 7777776554
Q ss_pred --hhCC--cEEEEehhhhhCCc
Q 026945 101 --ETGC--EGVLSAESLLENPA 118 (230)
Q Consensus 101 --~~ga--dgVmigR~~l~nP~ 118 (230)
+.|+ .||.+||....++-
T Consensus 263 A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 263 ACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHcCCCccchhhhHHHHhhhh
Confidence 3789 99999998877644
No 333
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.80 E-value=0.046 Score=51.61 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+..+.++.|.++|++.|.+-.-... ...-++.+++|++.. +++|++ |+|.|.+.+..+++ .|||+|-+|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~-aGad~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVE-AGADIVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHH-cCCCEEEECc
Confidence 4568889999999999988553222 134578999999987 577776 99999999999997 8999987543
No 334
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=95.79 E-value=0.087 Score=42.78 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.....-.+.+++.++|+|.|-+. .-...++++.+.+++|||+.|=|++-|++.++++ +||-+|.-.
T Consensus 108 ~Al~~~~~~i~~~~pD~iEvLPG-----------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~-aGA~avSTs 173 (181)
T COG1954 108 IALEKGIKQIEKSEPDFIEVLPG-----------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALK-AGAVAVSTS 173 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCc-----------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHH-hCcEEEeec
Confidence 33445566677788999987553 3348899999999999999999999999999997 899888754
No 335
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.78 E-value=0.1 Score=43.06 Aligned_cols=89 Identities=16% Similarity=0.331 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+.+. |+..=+|. .+.++..++++.+.+.|++.|.+.-++.. ..+.++.+++..+.-.++.|-
T Consensus 4 ~~~~~l~~~---~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---------~~e~~~~~~~~~~~~~~g~gt 70 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSDQ---------PAELISQLREKLPECIIGTGT 70 (187)
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCcEEeEEE
Confidence 455566443 34333675 35688999999999999999998665432 346777777766655577888
Q ss_pred CCCHHHHHHHHHhhCCcEEEEeh
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR 111 (230)
+.+.+++..+++ .|||+|+++-
T Consensus 71 vl~~d~~~~A~~-~gAdgv~~p~ 92 (187)
T PRK07455 71 ILTLEDLEEAIA-AGAQFCFTPH 92 (187)
T ss_pred EEcHHHHHHHHH-cCCCEEECCC
Confidence 999999999997 8999998865
No 336
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.78 E-value=0.23 Score=43.88 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccH-HHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADW-NAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~-~~i~~i 75 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+..|++-......++++ .+ -.+. +.+.+|
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI 138 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKI 138 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHH
Confidence 4566778888899999999999998875 334677889999999999999977543222221 11 1222 233444
Q ss_pred ---Hhh-CCccEEEcCCCCC------HHHHHH---HHHhhCCcEEEEehhhhhCCccccchh
Q 026945 76 ---KNA-LRIPVLANGNVRH------MEDVQK---CLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ---~~~-~~ipvi~nGgI~s------~~da~~---~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++. .+.+++.|....+ .+++.+ ...+.|||+|++ .|.+.+|.-+..+.
T Consensus 139 ~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv-~~~~~~~~ei~~~~ 199 (290)
T TIGR02321 139 AAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILI-HSRQKTPDEILAFV 199 (290)
T ss_pred HHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe-cCCCCCHHHHHHHH
Confidence 332 2445665553222 345442 223489999998 33345666555543
No 337
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.71 E-value=0.037 Score=52.23 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+.++.+.++|++.|.+-.-.. .. ..-++.++.+++.. ++||++ |+|-|.+++..+.+ .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g-----~~-~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~-aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHG-----HS-EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIE-AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCC-----cc-hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHH-cCCCEEEEC
Confidence 457899999999999887743211 10 12357788998887 799998 99999999999886 899999765
No 338
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.68 E-value=0.099 Score=44.49 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=30.1
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++. ..+++.+|+- +-......+++.+.++|++++|||+-
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred HHHHHHHhcCCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEccc
Confidence 557777765 4566666662 11123445677788999999999974
No 339
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.68 E-value=0.082 Score=46.57 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l 114 (230)
+..+-+++.|+|.+.|.-.|.-..+...+..||+.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 236 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIK-LGICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 3444455789999988766654433223467999999999999999998886544 456666765 8998888877554
No 340
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.63 E-value=0.13 Score=44.44 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++..+++.+++.++.+|. | .. ++-|++..++++ .+
T Consensus 109 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~--~~ 176 (263)
T cd03320 109 SFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIEYIE-------Q--PL-PPDDLAELRRLA--AG 176 (263)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCceEE-------C--CC-ChHHHHHHHHhh--cC
Confidence 3455567777777765 344444445567778888888888888777776 2 11 134677777776 78
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|.+
T Consensus 177 ~PIa~dEs~~~~~~~~~~~~~~~~d~v~~ 205 (263)
T cd03320 177 VPIALDESLRRLDDPLALAAAGALGALVL 205 (263)
T ss_pred CCeeeCCccccccCHHHHHhcCCCCEEEE
Confidence 99999888999999999998767887766
No 341
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.61 E-value=0.13 Score=46.59 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.-.+.+++++++++ +.+.+-..-+|+..++..+++.+++.++.++. | .. ++-|.+..+++++.+++||
T Consensus 173 ~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~~~~PI 242 (372)
T COG4948 173 EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLEWIE-------E--PL-PPDDLEGLRELRAATSTPI 242 (372)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCcceEE-------C--CC-CccCHHHHHHHHhcCCCCE
Confidence 55678889988874 67777777789988899999999999988876 2 11 2347889999999888999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.=.+.|..++.++++...+|.|.+
T Consensus 243 a~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 243 AAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred ecCcccccHHHHHHHHHcCCCCeecC
Confidence 99999999999999998655787654
No 342
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.59 E-value=0.066 Score=46.48 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=65.8
Q ss_pred CceEE--EEECC---CC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC
Q 026945 19 NVPVS--CKIRV---FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91 (230)
Q Consensus 19 ~~pvs--vKiR~---g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s 91 (230)
++||. +|.+. || ...+..++|+.++++|+++|.|..-... + .-+++.+..+++.+++||+.--=|.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~----f--~g~~~~l~~v~~~v~iPvl~kdfi~~ 122 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERF----F--QGSLEYLRAARAAVSLPVLRKDFIID 122 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEeccccc----C--CCCHHHHHHHHHhcCCCEEeeeecCC
Confidence 46774 45432 22 2346789999999999999988653221 2 22479999999999999998666778
Q ss_pred HHHHHHHHHhhCCcEEEEehhhhh
Q 026945 92 MEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 92 ~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+-++.++.. .|||+|.+.=.++.
T Consensus 123 ~~qi~~a~~-~GAD~VlLi~~~l~ 145 (260)
T PRK00278 123 PYQIYEARA-AGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHH-cCCCEEEEEeccCC
Confidence 888888776 89999977655554
No 343
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.58 E-value=0.08 Score=46.57 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+..||+.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 157 ea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 233 (282)
T TIGR01858 157 EAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIE-LGICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 44444668899999887766554433345679999999999999999999876554 45555664 788888776644
No 344
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.56 E-value=0.058 Score=51.18 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..+.++.|.++|+|.|.|. +.. +++ ..-.+.|+++++..+.+ .+..|.|-|++++..+++ .|||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~---g~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~-aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSE---GYS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE-AGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Ccc---ccc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH-cCCCEEEECC
Confidence 356788999999999999985 221 111 12257899999987643 356699999999999997 8999998854
No 345
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.47 E-value=0.26 Score=41.87 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh----CCccEE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipvi 84 (230)
++++.+.+.-=+|| +|. .+.+++.++++.+.+.|+..|.|.-||.. ..+.|+.+++. .+--++
T Consensus 7 ~~~~~l~~~~vi~V---vr~-~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~v 73 (222)
T PRK07114 7 AVLTAMKATGMVPV---FYH-ADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMIL 73 (222)
T ss_pred HHHHHHHhCCEEEE---EEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEE
Confidence 44555544322444 664 46789999999999999999999887643 23666666533 232378
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+.|-|.|.++++.+++ .|++.+|.= -.||.+.+..+
T Consensus 74 GaGTVl~~e~a~~a~~-aGA~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 74 GVGSIVDAATAALYIQ-LGANFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred eeEeCcCHHHHHHHHH-cCCCEEECC---CCCHHHHHHHH
Confidence 9999999999999997 899988762 25666665443
No 346
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.46 E-value=1 Score=43.69 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHhhcCCceE--EEEE--CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPV--SCKI--RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pv--svKi--R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
.|.+.+...++.+++. +..+ ++-. ..-.+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++
T Consensus 121 nd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~----l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 121 NDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGL----LKPYAAYELVSRIKK 195 (593)
T ss_pred CcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHH
Confidence 3556667777777664 3332 2222 22224567889999999999999998663322 222334678888998
Q ss_pred hCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 78 ALRIPVLANGNVRH---MEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 78 ~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
.+++||-.-+--++ ......+++ .|||.|=. |++ -+||.+-.-+..... .|-. ... -.+.+.-+.+
T Consensus 196 ~~~~pi~~H~Hnt~GlA~An~laAie-AGa~~vD~ai~glG~~-~Gn~~le~vv~~L~~--~~~~-~gi-dl~~l~~is~ 269 (593)
T PRK14040 196 RVDVPLHLHCHATTGLSTATLLKAIE-AGIDGVDTAISSMSMT-YGHSATETLVATLEG--TERD-TGL-DILKLEEIAA 269 (593)
T ss_pred hcCCeEEEEECCCCchHHHHHHHHHH-cCCCEEEecccccccc-ccchhHHHHHHHHHh--cCCC-cCC-CHHHHHHHHH
Confidence 88899876553322 233344554 79987633 443 256665433221110 1111 011 1244444555
Q ss_pred HHH-HHhhCCChhHHHHHHHHHHHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 150 YLK-LCEKYPVPWRMIRSHVHKLLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 150 yl~-~~~~~~~~~~~~r~h~~~~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
|++ +...|......++..=...+.+-++|- ..+..++.+.... -++++.+-+.+.......+|+++-.+
T Consensus 270 ~~~~v~~~Y~~~~~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP~S 342 (593)
T PRK14040 270 YFREVRKKYAKFEGQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTPTS 342 (593)
T ss_pred HHHHHHHHhccCCcccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 555 344553211111111111111125664 5667777766511 24445555555666777788877666
No 347
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.41 E-value=0.37 Score=41.98 Aligned_cols=103 Identities=15% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCC---------------CcCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------EKDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~---------------~~~~~~~~~~~~ 70 (230)
+...++.++..-..-+..=+-.|+ +.+.+.++++.|.+.|+|.|.+-=-+.+ -.++.+....++
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 444555555443222223345664 7889999999999999999998432211 112333344577
Q ss_pred HHHHHHhh-CCccEEEcCCC-----CCHHHHHHHHHhhCCcEEEE
Q 026945 71 AIKAVKNA-LRIPVLANGNV-----RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 71 ~i~~i~~~-~~ipvi~nGgI-----~s~~da~~~l~~~gadgVmi 109 (230)
.++++++. .++|++.=+=. .-.+...+..++.|+||+++
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 88888854 77898755422 23455566677799999999
No 348
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.37 E-value=0.15 Score=43.79 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCceEEEEECCCC-----------------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFP-----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~-----------------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
..+.+++++++ .+||...+-+.+ ..+++++=++.++++|++.|.+++. +.
T Consensus 114 ~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~ 180 (240)
T cd06556 114 HIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PV 180 (240)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CH
Confidence 44566777665 488887776522 1346777788999999999998652 45
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.++++.+.+++|+++||.=. +|||-++
T Consensus 181 e~~~~i~~~~~~P~~~~gag~------------~~dgq~l 208 (240)
T cd06556 181 ELAKQITEALAIPLAGIGAGS------------GTDGQFL 208 (240)
T ss_pred HHHHHHHHhCCCCEEEEecCc------------CCCceEE
Confidence 889999999999999886432 7887554
No 349
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.36 E-value=0.12 Score=45.49 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
..+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+
T Consensus 157 peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~-~GI~KiNi~T~l 235 (286)
T PRK12738 157 PQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATEL 235 (286)
T ss_pred HHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 334445566789999988776665443334568999999999999999999886544 455666665 788888776644
No 350
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.27 Score=41.35 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=67.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+.+.+++.--+|| +|. .+.++++.+++.+.+.|++.|.|.-|+.. -.+.|+.+++..+=-+|+.|-|
T Consensus 6 ~~~~l~~~~vI~V---lr~-~~~e~a~~~a~Ali~gGi~~IEITl~sp~---------a~e~I~~l~~~~p~~lIGAGTV 72 (211)
T COG0800 6 ILSKLKAQPVVPV---IRG-DDVEEALPLAKALIEGGIPAIEITLRTPA---------ALEAIRALAKEFPEALIGAGTV 72 (211)
T ss_pred HHHHHHHCCeeEE---EEe-CCHHHHHHHHHHHHHcCCCeEEEecCCCC---------HHHHHHHHHHhCcccEEccccc
Confidence 3444444322444 554 45789999999999999999999887643 3589999999988778999999
Q ss_pred CCHHHHHHHHHhhCCcEEEE
Q 026945 90 RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmi 109 (230)
-+++++.++.+ .|++.+..
T Consensus 73 L~~~q~~~a~~-aGa~fiVs 91 (211)
T COG0800 73 LNPEQARQAIA-AGAQFIVS 91 (211)
T ss_pred cCHHHHHHHHH-cCCCEEEC
Confidence 99999999987 89997764
No 351
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.33 E-value=0.19 Score=43.72 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+--.++++.+.+.+ ++||.+.+.. .+..+++++++.++++|++.+.+....... .+...-.++.+.|.+.+++|
T Consensus 50 ~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~p 125 (281)
T cd00408 50 EERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIELARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLP 125 (281)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHHHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCC
Confidence 33456666666554 5888887754 345789999999999999999998754321 11122356778888888899
Q ss_pred EE------EcCCCCCHHHHHHHHHhhCCcEE
Q 026945 83 VL------ANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 83 vi------~nGgI~s~~da~~~l~~~gadgV 107 (230)
|+ .+|---+++.+.++.+...+.|+
T Consensus 126 i~iYn~P~~tg~~l~~~~~~~L~~~~~v~gi 156 (281)
T cd00408 126 VILYNIPGRTGVDLSPETIARLAEHPNIVGI 156 (281)
T ss_pred EEEEECccccCCCCCHHHHHHHhcCCCEEEE
Confidence 87 34666678888877653334444
No 352
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.26 E-value=0.29 Score=41.06 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCceEEEEECCCCC-----hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPN-----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~-----~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++.+++.+++||..-.|-+.+ .....+.++.+.++|+++|.+....... + .+....+.++.+++..++|+
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p--~~~~~~~~i~~~~~~g~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-P--DGETLAELIKRIHEEYNCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-C--CCcCHHHHHHHHHHHhCCeE
Confidence 34555666568898643332211 0123457899999999988875432210 0 01134577778877656787
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+. ++.|++++..+.+ .|+|.+.+
T Consensus 127 iv--~v~t~~ea~~a~~-~G~d~i~~ 149 (219)
T cd04729 127 MA--DISTLEEALNAAK-LGFDIIGT 149 (219)
T ss_pred EE--ECCCHHHHHHHHH-cCCCEEEc
Confidence 76 6789999987775 89999865
No 353
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.25 E-value=0.26 Score=43.79 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.|+.+.+-++++++.++.|+.+.+.... ....+.++.+.+.|++.|.++.. . + .+.++++++. +++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g-------~--p--~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAG-------N--P--GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCC-------C--c--HHHHHHHHHc-CCE
Confidence 5788899999999888899988875422 12345667778899999987532 1 1 2578888775 778
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
|++ .|.|.+.+.++.+ .|+|+|.+
T Consensus 112 v~~--~v~s~~~a~~a~~-~GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEK-AGADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 774 7889999987775 89999986
No 354
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=95.25 E-value=0.094 Score=45.54 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEEecC-CCCCcCCCCCcccH----HHHHHHHh---hC--Cc-cEEEcCCCCCHHHHHHHHHhhC-C
Q 026945 37 KYAKMLEDAGCSLLAVHGR-TRDEKDGKKFRADW----NAIKAVKN---AL--RI-PVLANGNVRHMEDVQKCLEETG-C 104 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~r-t~~~~~~~~~~~~~----~~i~~i~~---~~--~i-pvi~nGgI~s~~da~~~l~~~g-a 104 (230)
+=++.+.++|+|.|.+|-. |....-+....... +.+.++.+ .+ ++ -++-.|-|.+|+|+..+++++. |
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 4456677999999999964 43322121111122 22333333 22 33 3444556999999999999876 9
Q ss_pred cEEEEehh
Q 026945 105 EGVLSAES 112 (230)
Q Consensus 105 dgVmigR~ 112 (230)
+|..-|..
T Consensus 241 ~Gf~G~Ss 248 (268)
T PF09370_consen 241 HGFIGASS 248 (268)
T ss_dssp EEEEESTT
T ss_pred CEEecccc
Confidence 99877653
No 355
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.21 E-value=0.26 Score=41.57 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=70.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc---cEEEc
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI---PVLAN 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i---pvi~n 86 (230)
+++.+.+. |+..=+|. .+.+++..+++.+.+.|+..+.|.-|+.. -.+.|+++++..+- -+++.
T Consensus 6 ~~~~l~~~---~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~~~---------a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 6 ILTKLKAN---GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTNPF---------ASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred HHHHHHHC---CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCCcc---------HHHHHHHHHHHcCCCCCeEEee
Confidence 44555443 33333665 35688999999999999999999887542 35889999887642 36899
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
|-|.|.++++++++ .|++.++. =-.||.+..-
T Consensus 73 GTV~~~~~~~~a~~-aGA~Fivs---P~~~~~v~~~ 104 (213)
T PRK06552 73 GTVLDAVTARLAIL-AGAQFIVS---PSFNRETAKI 104 (213)
T ss_pred eeCCCHHHHHHHHH-cCCCEEEC---CCCCHHHHHH
Confidence 99999999999997 89999884 2345555443
No 356
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.20 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCC--CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhC
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~g 103 (230)
.+..+-+++.|+|++.|.-.|.-..+. ..+..||+.+++|++.+++|++.-|+=..++++.+-+..+|
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 158 KEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred HHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhc
Confidence 344455567899999887666554332 12457999999999999999999999888886554444443
No 357
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.19 E-value=0.14 Score=45.05 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
.+..+-+++.|+|.+.|.-.|.-..+...+..||+.+++|++.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~-~Gi~KiNi~T~l 235 (284)
T PRK12737 158 DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAIS-LGICKVNVATEL 235 (284)
T ss_pred HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeCcHH
Confidence 34444455689999988766654433223457999999999999999998887554 455566665 899888887754
No 358
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.18 E-value=0.39 Score=42.32 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhhc-C--CceEEEEEC--C-CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALN-L--NVPVSCKIR--V-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~--~~pvsvKiR--~-g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
.++...+.|++++++ . +++|.+++- + +...+++++-++.+.++|+|.|.+++. ..+.+.+.++.
T Consensus 133 s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~----------~~~~~ei~~~~ 202 (285)
T TIGR02320 133 SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR----------KKDPDEILEFA 202 (285)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHH
Confidence 345556666666654 3 455555532 2 234678999999999999999999842 12345666666
Q ss_pred hhC-----CccEEEcCC---CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 77 NAL-----RIPVLANGN---VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 77 ~~~-----~ipvi~nGg---I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+ ++|++++.+ ..|. .+ |.+.|+..|..|-.++
T Consensus 203 ~~~~~~~p~~pl~~~~~~~~~~~~---~e-L~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 203 RRFRNHYPRTPLVIVPTSYYTTPT---DE-FRDAGISVVIYANHLL 244 (285)
T ss_pred HHhhhhCCCCCEEEecCCCCCCCH---HH-HHHcCCCEEEEhHHHH
Confidence 655 468887653 3343 33 3358999999885443
No 359
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.13 E-value=0.54 Score=40.33 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-C-hHHHHHHHHHHHHcCCCEEEEecC
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-N-LQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~-~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
.+.+.+.++.|...+++||++-+-.|. + ..+..+.++.+.++|+..|++-..
T Consensus 54 ~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 54 LTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 456678888888889999999999875 3 678899999999999999999775
No 360
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.11 E-value=0.15 Score=41.49 Aligned_cols=96 Identities=15% Similarity=0.303 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipv 83 (230)
+.+.++++++.. ..+|.|-+. + .+-++.+.++|+|.|-+-.-+.++ --+.+..++.. .++.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~---~----~ee~~ea~~~g~d~I~lD~~~~~~--------~~~~v~~l~~~~~~v~i 130 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE---N----LEEAEEALEAGADIIMLDNMSPED--------LKEAVEELRELNPRVKI 130 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES---S----HHHHHHHHHTT-SEEEEES-CHHH--------HHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC---C----HHHHHHHHHhCCCEEEecCcCHHH--------HHHHHHHHhhcCCcEEE
Confidence 345566666654 234666665 2 233555667999999886532211 11333334332 24889
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.++||| +++.+.++-+ +|+|.+.+|.-...-|++
T Consensus 131 e~SGGI-~~~ni~~ya~-~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 131 EASGGI-TLENIAEYAK-TGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp EEESSS-STTTHHHHHH-TT-SEEEECHHHHSBE--
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEcChhhcCCccc
Confidence 999999 5788888775 999999999866665553
No 361
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=95.08 E-value=0.28 Score=43.57 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEe------cCCC-CCcC-----------------------------------CCCCcc
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVH------GRTR-DEKD-----------------------------------GKKFRA 67 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh------~rt~-~~~~-----------------------------------~~~~~~ 67 (230)
.|.+-+.+++++++++|+.+|.+. ||.. +.++ ...+..
T Consensus 131 kdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl 210 (363)
T KOG0538|consen 131 KDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSL 210 (363)
T ss_pred CchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCC
Confidence 344568899999999999998774 2110 0000 001235
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+|+-|+.++...+.||+.-| |-+.+|+..+.+ .|++|+.+.
T Consensus 211 ~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave-~G~~GIIVS 251 (363)
T KOG0538|consen 211 SWKDIKWLRSITKLPIVVKG-VLTGEDARKAVE-AGVAGIIVS 251 (363)
T ss_pred ChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHH-hCCceEEEe
Confidence 79999999999999999965 668999999997 899999884
No 362
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.08 E-value=0.16 Score=45.05 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~ga 104 (230)
.|.+.+.++++.+.+.|++.|.+-|-|.+.. ..+..=..+.++.+++.+ .+|||+.-|=.+.+++.+ .-+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~-~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESP-TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccch-hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 3567788999999999999999999877632 111111234556666665 489887544444444443 3345899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
||+|+--..+..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999988888776
No 363
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.06 E-value=0.15 Score=44.89 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+.|-|.+... .+..=..+.++.+.+.+ ++||+++=+-.|.+++.+.. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~-Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS-LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc-CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999998776421 11111234455555544 58998665555666665433 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999988777663
No 364
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.03 E-value=0.22 Score=43.77 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh---CCccEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---LRIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~---~~ipvi 84 (230)
+.++.++... ..+|.|-++ +.+-+..+.++|+|.|-+-..+.++ --+.+..+++. -++.+.
T Consensus 171 ~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~~e~--------l~~~v~~l~~~~~~~~~~le 235 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMTPEE--------IREVIEALKREGLRERVKIE 235 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHHhcCcCCCEEEE
Confidence 4445555432 244555444 3344566668999988875543221 11233334332 257899
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 236 aSGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 236 VSGGI-TPENIEEYAK-LDVDVISLGALTHSVRN 267 (278)
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 99999 7999998776 99999999975553444
No 365
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.03 E-value=0.5 Score=41.47 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCC-CC---------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVF-PN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNA 71 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g-~~---------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~ 71 (230)
.+..+++++-.+. .+++|-.=+ +++ .. ..+..+..+-+++.|+|.|.|.-.|.-..+.. .+..||+.
T Consensus 109 i~~t~~vv~~ah~-~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~ 187 (276)
T cd00947 109 VAKTKEVVELAHA-YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDR 187 (276)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHH
Confidence 3455555555544 356655443 221 10 11233344445567999998765554433222 34579999
Q ss_pred HHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 72 IKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+++|.+.+++|++.-|+=..+ +++.++.+ .|+.-|=+++.+
T Consensus 188 L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 229 (276)
T cd00947 188 LKEIAERVNVPLVLHGGSGIPDEQIRKAIK-LGVCKININTDL 229 (276)
T ss_pred HHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 999999999999999987665 55677775 888888777654
No 366
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.02 E-value=0.26 Score=41.59 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=26.2
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..+...|||+ ++.+... ...|+|.+++||++...++
T Consensus 164 ~~i~V~gGI~-~~~~~~~-~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 164 FKVSVTGGLV-VEDLKLF-KGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred CeEEEcCCCC-HhhHHHH-hcCCCCEEEECCcccCCCC
Confidence 3478889996 5555554 4469999999998776655
No 367
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=94.99 E-value=0.18 Score=44.49 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~ 112 (230)
.+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|+..
T Consensus 159 eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~-~GI~KiNi~T~ 235 (286)
T PRK08610 159 KECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIP-FGTAKINVNTE 235 (286)
T ss_pred HHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeccH
Confidence 344444567899999887766654433234679999999999999999999987665 56666765 78887766553
No 368
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=94.98 E-value=0.52 Score=40.83 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ ++.||-+|--.+-+.+++.-.++.+.+.|-..|.+--|... .+|.. ..|+..+..+++. +.|||.-
T Consensus 107 ~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t--f~y~r~~~D~~~ip~~k~~-~~PVi~Dp 182 (258)
T TIGR01362 107 DLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS--FGYNNLVVDMRSLPIMREL-GCPVIFDA 182 (258)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--cCCCCcccchhhhHHHHhc-CCCEEEeC
Confidence 45666644 58999999887778889999999999999988888766542 12322 4588888888875 8999852
Q ss_pred --------------CCCCCH--HHHHHHHHhhCCcEEEEe
Q 026945 87 --------------GNVRHM--EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 --------------GgI~s~--~da~~~l~~~gadgVmig 110 (230)
||-+.. .-+...+. .|+||+||=
T Consensus 183 SHsvq~pg~~g~~s~G~r~~v~~la~AAvA-~GaDGl~iE 221 (258)
T TIGR01362 183 THSVQQPGGLGGASGGLREFVPTLARAAVA-VGIDGLFME 221 (258)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHH-hCCCEEEEE
Confidence 343332 22233444 799999993
No 369
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.95 E-value=0.46 Score=42.72 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
-.+.++++++.++ +.+.+-..-+|+..++ .+++.+++.++.+|. | .. .+.|++..+++++.+++||.+
T Consensus 165 d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a-~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~~pia~ 233 (354)
T cd03317 165 DVEPLKAVRERFPDIPLMADANSAYTLADI-PLLKRLDEYGLLMIE-------Q--PL-AADDLIDHAELQKLLKTPICL 233 (354)
T ss_pred HHHHHHHHHHHCCCCeEEEECCCCCCHHHH-HHHHHhhcCCccEEE-------C--CC-ChhHHHHHHHHHhhcCCCEEe
Confidence 3456777777653 2233333335666555 467888887777765 2 11 234788899999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.+++++..+++...+|.+.+
T Consensus 234 dEs~~~~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 234 DESIQSAEDARKAIELGACKIINI 257 (354)
T ss_pred CCccCCHHHHHHHHHcCCCCEEEe
Confidence 888999999999998666787765
No 370
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.80 E-value=2.4 Score=40.29 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHhhcCCce-EEEEECCC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLNVP-VSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~p-vsvKiR~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|.+.+...++++++.-... ..+-..++ .+.+..+++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl----l~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 121 NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAAL----LKPQPAYDIVKGIKEA 196 (499)
T ss_pred ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccC----CCHHHHHHHHHHHHHh
Confidence 45667777888887764322 22222222 35677899999999999999998664332 2223346788899998
Q ss_pred C--CccEEEcCCCC---CHHHHHHHHHhhCCcEEEE
Q 026945 79 L--RIPVLANGNVR---HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~--~ipvi~nGgI~---s~~da~~~l~~~gadgVmi 109 (230)
+ ++||-.-+--+ .......+++ .|||.|=.
T Consensus 197 ~~~~ipI~~H~Hnt~GlA~An~laAie-AGad~vDt 231 (499)
T PRK12330 197 CGEDTRINLHCHSTTGVTLVSLMKAIE-AGVDVVDT 231 (499)
T ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHH-cCCCEEEe
Confidence 8 68987665322 2333445554 79987643
No 371
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.77 E-value=0.75 Score=38.66 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+++.+.++++.+++..+.|+.+.+..........++++.+.++|++.|++++. . ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~---------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG--P---------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--C---------CHHHHHHHHH-cCCE
Confidence 46777788888887655676666655331135668889999999999999764 1 1345555554 4677
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.. +.+.+.+..+.+ .|+|++.+
T Consensus 105 ~i~~--v~~~~~~~~~~~-~gad~i~~ 128 (236)
T cd04730 105 VIPT--VTSVEEARKAEA-AGADALVA 128 (236)
T ss_pred EEEe--CCCHHHHHHHHH-cCCCEEEE
Confidence 7654 667888877665 79999865
No 372
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.75 E-value=0.61 Score=41.76 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCC-C-C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-----CCcc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRA 67 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g-~-~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-----~~~~ 67 (230)
.+..+++++..+. .+++|-.=+ +++ . + ..+..+..+-+++.|+|.+.+.-.|.-..+.. .+..
T Consensus 125 I~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~L 203 (321)
T PRK07084 125 VALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPL 203 (321)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCcc
Confidence 3445555555543 466655444 222 0 0 11233444445568999998866655433221 2457
Q ss_pred cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 68 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 68 ~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
||+.+++|++.+ ++|++.-|+=..+++..+.+...|-+
T Consensus 204 d~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 204 RFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 999999999999 69999999887676655555555543
No 373
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.75 E-value=0.22 Score=44.12 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+.. ..+..=..+.++.+.+.+ ++||+++-+- +.+++.+.. +..|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 556788999999999999999988776642 121111234455555554 5899866554 666665444 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999977655544
No 374
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.74 E-value=1.8 Score=40.86 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHhhcCC---ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLN---VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~---~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|.+.+...++.+++.-. .-++.-.....+.+-..++++.+.+.|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 129 nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~----l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 129 NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGI----LTPKAAKELVSGIKAM 204 (468)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHhc
Confidence 466777777887776421 222222222224566889999999999999998664322 1222346778888887
Q ss_pred CCccEEEcCCCCC---HHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 LRIPVLANGNVRH---MEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~~ipvi~nGgI~s---~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
.++||-.-+--+. ......+++ .|||.|=. |+++ +||.+=.-+.... ..|-.+ ... .+.+.-+.+|
T Consensus 205 ~~~pi~~H~Hnt~GlA~An~laAie-AGad~vD~ai~g~g~ga-gN~~tE~lv~~L~--~~g~~t-giD-l~~L~~~a~~ 278 (468)
T PRK12581 205 TNLPLIVHTHATSGISQMTYLAAVE-AGADRIDTALSPFSEGT-SQPATESMYLALK--EAGYDI-TLD-ETLLEQAANH 278 (468)
T ss_pred cCCeEEEEeCCCCccHHHHHHHHHH-cCCCEEEeeccccCCCc-CChhHHHHHHHHH--hcCCCC-CcC-HHHHHHHHHH
Confidence 7899876653322 333445554 79987633 3332 3554322111100 011110 111 2233333444
Q ss_pred HHHH-hhCCCh--h-HHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVP--W-RMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~--~-~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++.. ..|... + ..++.. -.-|.|. +|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 279 ~~~vr~~y~~~~~~~~~~~~~d~~v~~hq-iPGGm~snl~~Ql~~~g~~dr~~ev~~e~~~V~~~lG~p~~VTP~S 353 (468)
T PRK12581 279 LRQARQKYLADGILDPSLLFPDPRTLQYQ-VPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLS 353 (468)
T ss_pred HHHHHHHhcccccCCCccCCCCcceeeCC-CCcchHHHHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCCEECChh
Confidence 4422 233210 0 001000 0011122 444 24567777666511 25666666666777888888887766
No 375
>PLN02417 dihydrodipicolinate synthase
Probab=94.74 E-value=0.22 Score=43.56 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+.|-|.+.. ..+..=..+.++.+.+.+ ++||+++=+-.+.+++.+.. +..|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 556788899999999999999999877632 111111233445455544 48988664444555555443 358999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999987766665
No 376
>PRK02227 hypothetical protein; Provisional
Probab=94.73 E-value=1.4 Score=37.82 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH----Hh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i----~~ 77 (230)
.|..+.+|++.+... .|||..+-=.+ +......-+..+..+|+|+|-|---... . .....+.+..+ +.
T Consensus 38 ~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~---~--~~~~~~~~~~v~~a~~~ 110 (238)
T PRK02227 38 FPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGK---T--AEEAVEVMKAVVRAVKD 110 (238)
T ss_pred CHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCC---c--HHHHHHHHHHHHHhhhh
Confidence 355677777776543 79998875322 2334445566677899999987431100 0 01122333333 22
Q ss_pred h-CCccEEEcC--CCC-----CHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 78 A-LRIPVLANG--NVR-----HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 78 ~-~~ipvi~nG--gI~-----s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
. .+..|++.+ |-. ++.++.....+.|++++|+=.+.=..-.+|.-+ -.+.+.+
T Consensus 111 ~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l-------------------~~~~L~~ 171 (238)
T PRK02227 111 LDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHM-------------------DEEELAE 171 (238)
T ss_pred cCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhC-------------------CHHHHHH
Confidence 2 246666665 322 677888888889999999944222222222211 1345778
Q ss_pred HHHHHhhCC
Q 026945 150 YLKLCEKYP 158 (230)
Q Consensus 150 yl~~~~~~~ 158 (230)
|.+.+..+|
T Consensus 172 Fv~~ar~~G 180 (238)
T PRK02227 172 FVAEARSHG 180 (238)
T ss_pred HHHHHHHcc
Confidence 888887776
No 377
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.72 E-value=1.1 Score=43.49 Aligned_cols=201 Identities=17% Similarity=0.221 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +.-+.+-+- .+ .+.+..+++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~----~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 121 DVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGL----LTPYAAYELVKALKEE 195 (592)
T ss_pred hHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC----cCHHHHHHHHHHHHHh
Confidence 445556666666553 333332221 12 25677889999999999999998653322 2222346778888888
Q ss_pred CCccEEEcC----CCCCHHHHHHHHHhhCCcEEE-----EehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 79 LRIPVLANG----NVRHMEDVQKCLEETGCEGVL-----SAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 79 ~~ipvi~nG----gI~s~~da~~~l~~~gadgVm-----igR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
+++||-.-. |. .......+++ .|||.|= +|+++ +||.+-.-+.... ..|.. + .--.+.+.-+.+
T Consensus 196 ~~~pi~~H~Hnt~Gl-a~An~laAv~-aGad~vD~ai~g~g~~a-gn~~~e~vv~~L~--~~g~~-~-~idl~~l~~~s~ 268 (592)
T PRK09282 196 VDLPVQLHSHCTSGL-APMTYLKAVE-AGVDIIDTAISPLAFGT-SQPPTESMVAALK--GTPYD-T-GLDLELLFEIAE 268 (592)
T ss_pred CCCeEEEEEcCCCCc-HHHHHHHHHH-hCCCEEEeeccccCCCc-CCHhHHHHHHHHH--hCCCC-C-ccCHHHHHHHHH
Confidence 888887643 33 2344455564 7998763 34433 4666544322111 01111 1 111234444445
Q ss_pred HHH-HHhhCCC---hhHHHHHHHHHHHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 150 YLK-LCEKYPV---PWRMIRSHVHKLLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 150 yl~-~~~~~~~---~~~~~r~h~~~~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
|++ ....|.. ........+ |.+ -++|- ..++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 269 ~~~~~~~~y~~~~~~~~~~~~~v--~~~-~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~S 341 (592)
T PRK09282 269 YFREVRKKYKQFESEFTIVDTRV--LIH-QVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 341 (592)
T ss_pred HHHHHHHHhhcCCCccccCCccE--EEE-cCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 554 3333421 111111111 122 25664 5666677666411 14444444445666777777776655
No 378
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.71 E-value=0.47 Score=38.24 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=59.8
Q ss_pred CceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE-c-CCCC-
Q 026945 19 NVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-N-GNVR- 90 (230)
Q Consensus 19 ~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~-n-GgI~- 90 (230)
++||.+++.... ...++.+.++.+.++|++++.++.-.... .......-.++++++++.+ ++|++. | .+-.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~ 126 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSL-KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK 126 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHH-hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 489998886532 15789999999999999999997532110 0000112257777888874 889773 2 2222
Q ss_pred CHHHHHHH---HHhhCCcEEEEehh
Q 026945 91 HMEDVQKC---LEETGCEGVLSAES 112 (230)
Q Consensus 91 s~~da~~~---l~~~gadgVmigR~ 112 (230)
+++...++ +.+.|+|+|=...+
T Consensus 127 ~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 127 TADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 66666654 34689999866544
No 379
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.69 E-value=0.23 Score=43.65 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||+++-+. +.+++.+.. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~-Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFS-LTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCccc-CCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 5567788999999999999999987776431 11111233445555554 5899986665 666665444 458999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+.-..+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999987766554
No 380
>PRK12999 pyruvate carboxylase; Reviewed
Probab=94.69 E-value=1.3 Score=46.31 Aligned_cols=207 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHhhcCC---ceEEEE------ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN---VPVSCK------IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~---~pvsvK------iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+.+.+...++.+++.-. +-++.- .|.-.+.+-.+++++.++++|++.|.+-.-... ..+..-.+.+
T Consensus 651 nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~----l~P~~~~~lv 726 (1146)
T PRK12999 651 NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGL----LKPAAAYELV 726 (1146)
T ss_pred ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC----CCHHHHHHHH
Confidence 345667777777776521 223322 232245667889999999999999998664322 2233456888
Q ss_pred HHHHhhCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhh----hhCCccccchhhhhhccCccccCCCChHHHHH
Q 026945 73 KAVKNALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESL----LENPALFAGFRTAEWIVGSEEISKDGNLDQAD 145 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~----l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~ 145 (230)
+.+++.+++||-.-+-=++ ......+++ .|||.|=.+=.- -+||.+-.-+.... ..|-. + .--.+.+.
T Consensus 727 ~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~-aGad~vD~av~glg~~tgn~~le~vv~~L~--~~~~~-t-~idl~~l~ 801 (1146)
T PRK12999 727 SALKEEVDLPIHLHTHDTSGNGLATYLAAAE-AGVDIVDVAVASMSGLTSQPSLNSIVAALE--GTERD-T-GLDLDAIR 801 (1146)
T ss_pred HHHHHHcCCeEEEEeCCCCchHHHHHHHHHH-hCCCEEEecchhhcCCcCCHHHHHHHHHHH--hcCCC-C-CcCHHHHH
Confidence 9999999999987664333 233344554 799977443332 23454322211111 01111 0 11123444
Q ss_pred HHHHHHHHHhh-CCChhHHHHHHHH-HHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 146 LLVEYLKLCEK-YPVPWRMIRSHVH-KLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 146 ~~~~yl~~~~~-~~~~~~~~r~h~~-~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
-+.+|++-.+. |......++..-. -|.|. .|| ...++.++.+.... -++++.+.+.+..+....+|+++-.+
T Consensus 802 ~~s~~~~~~r~~y~~~~~~~~~~~~~v~~~~-~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~S 878 (1146)
T PRK12999 802 KLSPYWEAVRPYYAPFESGLKSPTTEVYLHE-MPGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDIVKVTPSS 878 (1146)
T ss_pred HHHHHHHHHHhHhhccCCCCCCCCcCeEEec-CCCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCCceeCccc
Confidence 45555554332 3111011111111 11122 444 34567777665411 26677777777778888888877666
No 381
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.31 Score=40.98 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
.++.+++..++||.==+++....+ .-.......-++.+-+-.....+..+.....||+.+... ....|++..||+
T Consensus 89 ~~~~l~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL 163 (208)
T COG0135 89 YIDQLKEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHHhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCC
Confidence 345555554677765566543211 112223344578888776655443343335799998877 567899999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+++++.++++.....||=+.+|.-.+|
T Consensus 164 -~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 164 -NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred -CHHHHHHHHHhcCCceEEeccccccCC
Confidence 699999999844349999999988888
No 382
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.62 E-value=0.21 Score=44.15 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+..+.++|+|.|-+-..+. +.++++.+.+ ++.+.++||| +++.+.++-+ +|+|.+.+|.-.
T Consensus 207 leea~~a~~agaDiImLDnmsp------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~-tGVD~Is~galt 272 (290)
T PRK06559 207 LAAAEEAAAAGADIIMLDNMSL------------EQIEQAITLIAGRSRIECSGNI-DMTTISRFRG-LAIDYVSSGSLT 272 (290)
T ss_pred HHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhcCceEEEEECCC-CHHHHHHHHh-cCCCEEEeCccc
Confidence 3445666689999999755433 3333332222 5789999999 6888888775 999999998744
Q ss_pred hhCCc
Q 026945 114 LENPA 118 (230)
Q Consensus 114 l~nP~ 118 (230)
..-|+
T Consensus 273 hsa~~ 277 (290)
T PRK06559 273 HSAKS 277 (290)
T ss_pred cCCcc
Confidence 43343
No 383
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.57 E-value=0.27 Score=42.10 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=55.4
Q ss_pred CC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHHhhCCccEEEcCCC--
Q 026945 28 VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVKNALRIPVLANGNV-- 89 (230)
Q Consensus 28 ~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~~~~~ipvi~nGgI-- 89 (230)
.| ++.+.+.++++.++++|+|+|++---..+.. ++..-..-++.++++++..++|++.=+-.
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 44 4677899999999999999999962111100 01101123677888888778997653222
Q ss_pred -CC--HHHHHHHHHhhCCcEEEEe
Q 026945 90 -RH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 90 -~s--~~da~~~l~~~gadgVmig 110 (230)
.+ .+...+.+.+.|+||+.+-
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC
Confidence 22 3777777778999999994
No 384
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.55 E-value=0.27 Score=42.66 Aligned_cols=86 Identities=27% Similarity=0.384 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.-+-.+.+++.+ ..++.|+|
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 556788999999999999999988776542 111111234455555655 589886655555555554 33457999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 95 ~v~v~pP~y~~~ 106 (281)
T cd00408 95 GVLVVPPYYNKP 106 (281)
T ss_pred EEEECCCcCCCC
Confidence 999987666554
No 385
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.48 E-value=0.24 Score=43.45 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-hCCccE
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipv 83 (230)
-+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+|..+.++ --+.++.+++ ..++.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~--------l~~~v~~l~~~~~~~~l 238 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ--------LHHLHERLKFFDHIPTL 238 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHhccCCCEEE
Confidence 4567777777653 344555544 3455666778999999999644332 1234444442 235789
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.++||| +++.+.++-+ +|+|.+++|--....|
T Consensus 239 easGGI-~~~ni~~ya~-~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 239 AAAGGI-NPENIADYIE-AGIDLFITSAPYYAAP 270 (277)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCcceecCc
Confidence 999999 6899988775 9999999986433333
No 386
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.47 E-value=0.96 Score=39.63 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhh-CCccEEEc
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNA-LRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~-~~ipvi~n 86 (230)
+++.++.+ ++.||-+|--.+-+.+++.-.++.+.+.|...|.+--|...- +|. -..|...+..+++. .++|||.-
T Consensus 121 dLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~f--gy~~~~~D~~~ip~mk~~~t~lPVi~D 197 (281)
T PRK12457 121 DLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSF--GYDNLVVDMLGFRQMKRTTGDLPVIFD 197 (281)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCC--CCCCcccchHHHHHHHhhCCCCCEEEe
Confidence 45566644 589999998766667889999999999999888887664331 222 24688888889886 58999852
Q ss_pred ---------------CCCCC--HHHHHHHHHhhCCcEEEEe
Q 026945 87 ---------------GNVRH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 ---------------GgI~s--~~da~~~l~~~gadgVmig 110 (230)
||-+. +.-+...+. .|+||+|+=
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA-~GaDGl~iE 237 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMA-VGLAGLFLE 237 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE
Confidence 33322 122334444 799999993
No 387
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.47 E-value=3.1 Score=40.43 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEE----ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCK----IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvK----iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
.|.+.+..-++++++.- .-+-.- +..-.+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++
T Consensus 120 nd~~n~~~~i~~~k~~G-~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~----l~P~~v~~lv~alk~ 194 (596)
T PRK14042 120 NDARNLKVAIDAIKSHK-KHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGL----LTPTVTVELYAGLKQ 194 (596)
T ss_pred cchHHHHHHHHHHHHcC-CEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccC----CCHHHHHHHHHHHHh
Confidence 35566666677776643 222111 121235678899999999999999998664322 223345688889999
Q ss_pred hCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhh----hCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 78 ALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLL----ENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 78 ~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l----~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
.+++||-.-+--+. ......+++ .|||.|=.+=+-+ +||.+-.-+...+ ..|.. + .--.+.+.-+.+|
T Consensus 195 ~~~ipi~~H~Hnt~Gla~an~laAie-aGad~iD~ai~glGg~tGn~~tE~lv~~L~--~~g~~-t-gidl~~l~~~~~~ 269 (596)
T PRK14042 195 ATGLPVHLHSHSTSGLASICHYEAVL-AGCNHIDTAISSFSGGASHPPTEALVAALT--DTPYD-T-ELDLNILLEIDDY 269 (596)
T ss_pred hcCCEEEEEeCCCCCcHHHHHHHHHH-hCCCEEEeccccccCCCCcHhHHHHHHHHH--hcCCC-C-CCCHHHHHHHHHH
Confidence 88999876653322 333345554 7998763322222 5555432221111 01111 1 1112344445555
Q ss_pred HHHH-hhCCChhHHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVPWRMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~~~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++-. ..|..-...++.. ..-|.|. .|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 270 ~~~vr~~y~~~~~~~~~~~~~v~~hq-~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~~~VTP~S 341 (596)
T PRK14042 270 FKAVRKKYSQFESEAQNIDPRVQLYQ-VPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYPPLVTPTS 341 (596)
T ss_pred HHHHHHHHhhcCCccccCCcceeecC-CCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeECCcC
Confidence 5533 2331100000000 0011122 444 34567777666411 25666666666777777788776665
No 388
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.43 E-value=0.3 Score=43.05 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEC-CC-C-C-----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC--CCccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIR-VF-P-N-----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRAD 68 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~-----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~~~ 68 (230)
...+++++-.+. .+++|-.=+- ++ . + ..+..+..+-+++.|+|.|.|.-.|.-..+.. .+..|
T Consensus 114 ~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld 192 (287)
T PF01116_consen 114 AITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLD 192 (287)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--
T ss_pred HHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccC
Confidence 344455544433 4677766552 22 1 0 01344555666789999999876665543332 44578
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHH-HHHHHHHhhCCcEEEEehhhh
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~-da~~~l~~~gadgVmigR~~l 114 (230)
++.+++|++.+ ++|++.-||=..++ ++.++.+ .|+.-|=+++.+.
T Consensus 193 ~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 193 FDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIK-NGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHH-TTEEEEEESHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHH-cCceEEEEehHHH
Confidence 99999999999 99999999866555 6777775 7888887776543
No 389
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.43 E-value=1.2 Score=41.74 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.++++.+++. +..+.+-+.. + .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 d~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~----l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 121 DVRNLETAVKATKKA-GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGI----LTPYVAYELVKRIKEA 195 (448)
T ss_pred cHHHHHHHHHHHHHc-CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC----CCHHHHHHHHHHHHHh
Confidence 445566777777654 4433332222 2 24567889999999999999998764332 1222346788889998
Q ss_pred CCccEEEcC----CCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANG----NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nG----gI~s~~da~~~l~~~gadgVmi 109 (230)
+++||-.-+ |. ....+..+++ .|||.|=.
T Consensus 196 ~~~pi~~H~Hnt~Gl-A~AN~laAie-aGad~vD~ 228 (448)
T PRK12331 196 VTVPLEVHTHATSGI-AEMTYLKAIE-AGADIIDT 228 (448)
T ss_pred cCCeEEEEecCCCCc-HHHHHHHHHH-cCCCEEEe
Confidence 889987644 33 2344445564 79997743
No 390
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.43 E-value=0.29 Score=42.98 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+...++++.+.+ .|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||+++=+-.+.+++.+.. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~-~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAF-LLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccc-cCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 55678899999999 9999999999776632 121111234455555554 48998765555666665433 35899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-+.+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999988776663
No 391
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.42 E-value=0.29 Score=43.08 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+
T Consensus 159 ~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~ 235 (284)
T PRK12857 159 EARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAIS-LGVRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 4444456789999988766654333223457999999999999999999887554 455666665 788888776644
No 392
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.41 E-value=0.22 Score=43.24 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=58.6
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHH-hhCCccEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVK-NALRIPVL 84 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~-~~~~ipvi 84 (230)
+..=+-.| ++.+.+.++++.+.+.|||.|.+-=-..+-. ++.+-.--++.+++++ +..++|++
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 44445565 5778899999999999999999843221100 1111112367778887 44678977
Q ss_pred EcCCCC-----CHHHHHHHHHhhCCcEEEE
Q 026945 85 ANGNVR-----HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 ~nGgI~-----s~~da~~~l~~~gadgVmi 109 (230)
.=+=.+ ..+...+.+++.|+||+.+
T Consensus 94 lm~Y~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 94 LMTYYNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred EEecccHHhhcCHHHHHHHHHHcCCcEEEE
Confidence 655332 4566777777899999999
No 393
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.7 Score=40.66 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CC--ccc----HHHHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KF--RAD----WNAIKAV 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~--~~~----~~~i~~i 75 (230)
.+.+.+.++.|..++++||+|-+-.|+. ..+..+.++.++++|+..+++-.-....+.|. .+ -.+ -+.|+.+
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa 142 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAA 142 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHH
Confidence 4567788888999999999999988763 56788899999999999999976544322222 11 122 2334444
Q ss_pred HhhC-CccEEEcCC-----CCCHHHHHH---HHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 76 KNAL-RIPVLANGN-----VRHMEDVQK---CLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 76 ~~~~-~ipvi~nGg-----I~s~~da~~---~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
++.. +.+++.+.- +...+++.+ ...+.|||+|-. ..+.++.-|..+..
T Consensus 143 ~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al~~~e~i~~f~~ 199 (289)
T COG2513 143 VEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EALTDLEEIRAFAE 199 (289)
T ss_pred HHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccCCCHHHHHHHHH
Confidence 5543 345554431 112444432 223489998865 46666777766543
No 394
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.37 E-value=1.6 Score=45.67 Aligned_cols=210 Identities=14% Similarity=0.050 Sum_probs=109.5
Q ss_pred CChHHHHHHHHHHhhcCCc---eEEEE------ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNV---PVSCK------IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~---pvsvK------iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.|.+-+...++++++.-.. -++.- .|.-.+.+-.+++++.+.++|++.|.+-.-... ..+..-.+.+
T Consensus 649 N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gl----l~P~~~~~Lv 724 (1143)
T TIGR01235 649 NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGL----LKPAAAKLLI 724 (1143)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC----cCHHHHHHHH
Confidence 4556666677777664221 12111 122234566889999999999999998664332 2233457888
Q ss_pred HHHHhhCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhhh-CCccccchhhhhhccCccccCCCChHHHHHHHH
Q 026945 73 KAVKNALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRTAEWIVGSEEISKDGNLDQADLLV 148 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (230)
+.+++.+++||-.-.--++ ......+++ .|||.|=.+=+-|+ ++....-..--..+......+ .--.+.+.-+.
T Consensus 725 ~~lk~~~~~pi~~H~Hdt~Gla~an~laA~e-aGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~t-gidl~~l~~is 802 (1143)
T TIGR01235 725 KALREKTDLPIHFHTHDTSGIAVASMLAAVE-AGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDP-GLNVAWIRELS 802 (1143)
T ss_pred HHHHHhcCCeEEEEECCCCCcHHHHHHHHHH-hCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCC-CcCHHHHHHHH
Confidence 9999988999886653332 233344554 79998855543333 343211000001111111111 11123444455
Q ss_pred HHHHHH-hhCCChhHHHHHHH-HHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 149 EYLKLC-EKYPVPWRMIRSHV-HKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 149 ~yl~~~-~~~~~~~~~~r~h~-~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
+|++-. ..|......++..- .-|.|. .|| ...++.++.+.... -++++.+.+.+.......+|+++-.+
T Consensus 803 ~~~~~vr~~y~~~~~~~~~~~~~v~~~~-~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~~VTP~S 876 (1143)
T TIGR01235 803 AYWEAVRNLYAAFESDLKGPASEVYLHE-MPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIVKVTPSS 876 (1143)
T ss_pred HHHHHHHHHhhcCCCCCcCCCcCeEEec-CCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCceECChh
Confidence 565533 23321101111110 011222 444 24566677665411 37777777777777778888877666
No 395
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.33 E-value=0.75 Score=40.39 Aligned_cols=73 Identities=19% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~ 85 (230)
+++.++. .++.||-+|--...+.+++.-.++.+.+.|...|.+--|... .+|.. ..|...+..+++ .+.|||.
T Consensus 121 dLL~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t--Fgy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 121 DLLVAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred HHHHHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--cCCCCcccchhhhHHHHh-cCCCEEE
Confidence 3455554 358999999888888899999999999999998888777542 13322 357788888875 7889985
No 396
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.33 E-value=0.53 Score=39.50 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=61.6
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH-HHHHhhCCccEEEcCCC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI-KAVKNALRIPVLANGNV 89 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i-~~i~~~~~ipvi~nGgI 89 (230)
++.++...+++|.--+++... .+... .... ...+|++-+...+. +..+..-..||+.+ +. .+.|++..|||
T Consensus 92 ~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~d~~L~Ds~~~-~~GGtG~~~dw~~l~~~----~~~p~~LAGGi 163 (210)
T PRK01222 92 CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDADGLLLDAYVG-LPGGTGKTFDWSLLPAG----LAKPWILAGGL 163 (210)
T ss_pred HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccCCEEEEcCCCC-CCCCCCCccchHHhhhc----cCCCEEEECCC
Confidence 445555456677655665422 12111 1111 23588988877654 22222224589887 33 36799999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++.+.++++..+..||=+..|.-..|.
T Consensus 164 -~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 164 -NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred -CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 6999999998778888888777665553
No 397
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=94.32 E-value=0.69 Score=41.25 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+.++++++.+ ++.+.+-..-+|+.+. ...++.+++.++.+|. | .. .+-+++..+++++.+++||.+.=
T Consensus 162 ~~v~~vr~~~~~~~l~vDaN~~~~~~~-a~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~~pia~dE 230 (324)
T TIGR01928 162 QLVKLRRLRFPQIPLVIDANESYDLQD-FPRLKELDRYQLLYIE-------E--PF-KIDDLSMLDELAKGTITPICLDE 230 (324)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCHHH-HHHHHHHhhCCCcEEE-------C--CC-ChhHHHHHHHHHhhcCCCEeeCC
Confidence 4455555543 1222222222355444 2456666666665554 1 11 12368889999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
.+.++.++.++++...+|.+.+
T Consensus 231 s~~~~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 231 SITSLDDARNLIELGNVKVINI 252 (324)
T ss_pred CcCCHHHHHHHHHcCCCCEEEe
Confidence 8999999999998777887754
No 398
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=94.32 E-value=0.2 Score=42.32 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=54.8
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+++.+.|+..|-|..|.-.. + ..|......+.+.++ +-+++-.||+|++|+...-+ .|+.+|.+|..++..-
T Consensus 200 ~raleiGakvvGvNNRnL~s---F--eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~-~GV~avLVGEslmk~s 273 (289)
T KOG4201|consen 200 QRALEIGAKVVGVNNRNLHS---F--EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK-AGVKAVLVGESLMKQS 273 (289)
T ss_pred HHHHHhCcEEEeecCCccce---e--eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH-cCceEEEecHHHHhcc
Confidence 33445588888888876542 2 567787888877664 55677789999999998776 8999999999998743
No 399
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.28 E-value=0.66 Score=38.89 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCceEEEEECCC-CC----hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVSCKIRVF-PN----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g-~~----~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++++++.+++||...++-. ++ .....+.++.+.++|+++|.+-...... . .+....+.++.+++..++|+
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p--~~~~~~~~i~~~~~~~~i~v 122 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-P--DGETLAELVKRIKEYPGQLL 122 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-C--CCCCHHHHHHHHHhCCCCeE
Confidence 566777777789986443411 00 0113456899999999988876543210 0 00122456666665456777
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+. ++.|.+++..+.+ .|+|.+.++
T Consensus 123 i~--~v~t~ee~~~a~~-~G~d~i~~~ 146 (221)
T PRK01130 123 MA--DCSTLEEGLAAQK-LGFDFIGTT 146 (221)
T ss_pred EE--eCCCHHHHHHHHH-cCCCEEEcC
Confidence 75 6789999987665 899998764
No 400
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.23 E-value=0.23 Score=41.61 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..+++.++.-+ ++|++..||| +++++.+.|+ .|+.+|.+|..+.....
T Consensus 136 ~~yikal~~plp~i~~~ptGGV-~~~N~~~~l~-aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGI-NLANVRDYLA-APNVACGGGSWLVPKDL 184 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCC-CHHHHHHHHh-CCCEEEEEChhhcCchh
Confidence 37788887755 5999999999 5799999997 89999999997775443
No 401
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.19 E-value=0.31 Score=42.99 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+. .|++.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 162 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 239 (288)
T TIGR00167 162 EAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAIS-LGVVKVNIDTEL 239 (288)
T ss_pred HHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEcChHH
Confidence 344445678999998876665443322234 79999999999999999999987666 56677775 788888777654
No 402
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.16 E-value=0.71 Score=40.88 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++-=.++++.+++.+ .+||.+-+-. .+..+++++++.+++.|+|.+-+.+-.... .+..--+++.+.|.+++++
T Consensus 56 ~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~lak~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIELAKHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHHHHHHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCC
Confidence 344456677777766 4787776643 346889999999999999999988754321 1112346778888888899
Q ss_pred cEE-Ec-----CCCCCHHHHHHHHH
Q 026945 82 PVL-AN-----GNVRHMEDVQKCLE 100 (230)
Q Consensus 82 pvi-~n-----GgI~s~~da~~~l~ 100 (230)
|++ .| |---+++.+.++-+
T Consensus 132 PvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 132 PVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred CEEEEeCccccCCCCCHHHHHHHhc
Confidence 875 55 44456777766554
No 403
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.15 E-value=0.32 Score=43.18 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+++.+ ++||+++-+-.+.+++.+.. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECAT-LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchh-CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 5567888999999999999999887766321 11111223444455544 49988765544556665444 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+--..+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999988766555
No 404
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.13 E-value=0.85 Score=38.93 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCc--eEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---ecCCCCCcCCCCCcccHHHHHHHHhh---
Q 026945 7 VKSLVEKLALNLNV--PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA--- 78 (230)
Q Consensus 7 ~~eiv~~v~~~~~~--pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---h~rt~~~~~~~~~~~~~~~i~~i~~~--- 78 (230)
+.++++.+++. ++ -..+-+..+...+....+ +.. +|.|.| .+....|. +. +.-++-|+++++.
T Consensus 105 ~~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~---l~~--vD~VLiMtV~PGfgGQ~--f~-~~~l~KI~~lr~~~~~ 175 (228)
T PRK08091 105 LALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPY---LDQ--IDLIQILTLDPRTGTKA--PS-DLILDRVIQVENRLGN 175 (228)
T ss_pred HHHHHHHHHHC-CCCceEEEEECCCCCHHHHHHH---Hhh--cCEEEEEEECCCCCCcc--cc-HHHHHHHHHHHHHHHh
Confidence 45666777664 45 344444433232222222 222 666644 44444332 11 2234556655543
Q ss_pred --CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 79 --LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 79 --~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.++.|-+-|||+ .+.+..+.+ .|||.+.+|+++..++.
T Consensus 176 ~~~~~~IeVDGGI~-~~ti~~l~~-aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 176 RRVEKLISIDGSMT-LELASYLKQ-HQIDWVVSGSALFSQGE 215 (228)
T ss_pred cCCCceEEEECCCC-HHHHHHHHH-CCCCEEEEChhhhCCCC
Confidence 246688999995 778887775 89999999998876665
No 405
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.13 E-value=0.26 Score=39.20 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHH----HHHhhCCcEEE
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 108 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~----~l~~~gadgVm 108 (230)
+...+.++.+.+.|++.+.+......... .....++.+..++...++|++++..+.+..+... ...+.|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE--AETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECccc--CCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 46789999999999999998765543221 1122224577777788999999888777666542 55568999999
Q ss_pred Eehhhh
Q 026945 109 SAESLL 114 (230)
Q Consensus 109 igR~~l 114 (230)
+.=+..
T Consensus 90 l~~~~~ 95 (200)
T cd04722 90 IHGAVG 95 (200)
T ss_pred EeccCC
Confidence 976553
No 406
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=94.12 E-value=0.31 Score=42.28 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.++++|+++|.|-.-... + .-.++.+..+++.+++||...==|-++-++.+... .|||+|.+=-+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe~~~----F--~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~-~GADaVLLI~~ 140 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTEPKF----F--GGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARA-AGADAVLLIAA 140 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE--SCC----C--HHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHH-TT-SEEEEEGG
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCC----C--CCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHH-cCCCEeehhHH
Confidence 46889999999999999998753221 2 22579999999999999999888999999999886 89999977554
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+|.+
T Consensus 141 ~L~~ 144 (254)
T PF00218_consen 141 ILSD 144 (254)
T ss_dssp GSGH
T ss_pred hCCH
Confidence 5443
No 407
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.08 E-value=0.89 Score=40.27 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECC----CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~----g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++.+. +.++.+=-|. ....+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 131 ~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-----------~~~~ei~~~~~~ 199 (294)
T TIGR02319 131 TEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-----------LDVEEMKRVRDE 199 (294)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC-----------CCHHHHHHHHHh
Confidence 334444455555433 3445555554 235678888899999999999999862 234778999998
Q ss_pred CCccEE---EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVL---ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi---~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+. ..|+-.-.-.+.+ |.+.|+..|..+-.++
T Consensus 200 ~~~P~~~nv~~~~~~p~~s~~e-L~~lG~~~v~~~~~~~ 237 (294)
T TIGR02319 200 IDAPLLANMVEGGKTPWLTTKE-LESIGYNLAIYPLSGW 237 (294)
T ss_pred cCCCeeEEEEecCCCCCCCHHH-HHHcCCcEEEEcHHHH
Confidence 888873 3343211122333 3347999999985444
No 408
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.08 E-value=2.4 Score=36.24 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH----HHHHhh
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI----KAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i----~~i~~~ 78 (230)
|..+.+|++.+.. ..|||.-+-=.+ +.......+......|+|+|-|---.... + ..-.+.+ +.+++.
T Consensus 39 ~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~---~--~~a~e~l~~v~~av~~~ 111 (235)
T PF04476_consen 39 PWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKD---Y--DEAIEALEAVVRAVKDF 111 (235)
T ss_pred HHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCC---H--HHHHHHHHHHHHHHhhh
Confidence 4555555555433 389999874322 22333334555667899999874321100 0 0012333 333332
Q ss_pred C-CccEEEcC--CCC-----CHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 L-RIPVLANG--NVR-----HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~-~ipvi~nG--gI~-----s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
- +..+++.+ |-. ++-++.+...+.||+++|+=.+.=....+|.-.. .+.+.+|
T Consensus 112 ~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~-------------------~~~L~~F 172 (235)
T PF04476_consen 112 DPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLS-------------------EEELAEF 172 (235)
T ss_pred CCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCC-------------------HHHHHHH
Confidence 2 34566655 432 5667778888899999999775544555555332 2446777
Q ss_pred HHHHhhCCChh----HHHHHHHHHHHhhhcCCCHHHHHHHHhc
Q 026945 151 LKLCEKYPVPW----RMIRSHVHKLLGEWFRIQPGVREDLNAQ 189 (230)
Q Consensus 151 l~~~~~~~~~~----~~~r~h~~~~l~~~~~~~~~~r~~l~~~ 189 (230)
.+.+..+|.-. ..-..|+..+. .+-+..=.+|-.++..
T Consensus 173 v~~ar~~gL~~aLAGSL~~~di~~L~-~l~pD~lGfRGAvC~g 214 (235)
T PF04476_consen 173 VAQARAHGLMCALAGSLRFEDIPRLK-RLGPDILGFRGAVCGG 214 (235)
T ss_pred HHHHHHccchhhccccCChhHHHHHH-hcCCCEEEechhhCCC
Confidence 77777765210 01112332222 1223334567777765
No 409
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.07 E-value=0.72 Score=39.62 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+.+...+++|++.+. .||++-+-.|. +.++..+.++.+.++|++.|.+-+-. -..+.++.+++. .
T Consensus 57 l~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~----------~~~~~i~ai~~a-~ 125 (240)
T cd06556 57 VNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE----------WHIETLQMLTAA-A 125 (240)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH----------HHHHHHHHHHHc-C
Confidence 4567778888888775 79999998764 34688899999999999999996631 112445666554 4
Q ss_pred ccEEEcCCCC---------------CHHHHHH------HHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVR---------------HMEDVQK------CLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~---------------s~~da~~------~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++-=|.. +.+.+++ .+++.|||+|.+= +. ++...+++
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~--~~e~~~~i 186 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME-CV--PVELAKQI 186 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC--CHHHHHHH
Confidence 7888665551 1222322 3345899999883 22 44444444
No 410
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.07 E-value=0.74 Score=40.95 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=59.6
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--CCCCCcc---c----HHHHHHHHhhCCccEEE--cC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRA---D----WNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--~~~~~~~---~----~~~i~~i~~~~~ipvi~--nG 87 (230)
+.|+.+-+- |.+.++..+.++.++++|+|.|.+|......+ ..+.|.. + .+.++.+++.+++||.+ .+
T Consensus 62 ~~p~i~ql~-g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLF-GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred cceEEEEEe-CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 578777764 45678899999999999999999997543211 1112221 2 35566777778889864 23
Q ss_pred CC----CCHHHHHHHHHhhCCcEEEE
Q 026945 88 NV----RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI----~s~~da~~~l~~~gadgVmi 109 (230)
|. .+..++.+.+++.|+|++.+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 32 23455666677799999966
No 411
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.06 E-value=0.37 Score=41.99 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-+.+.. ..+..-..+.++.+.+.+ ++||++.=+-.|.+++.+.. ++.|+|
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~-~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESP-TLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 556788999999999999999998776542 121111234555555655 48887543334555555433 358999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+....+..|
T Consensus 98 ~v~~~~P~~~~~ 109 (284)
T cd00950 98 AALVVTPYYNKP 109 (284)
T ss_pred EEEEcccccCCC
Confidence 999998766544
No 412
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.01 E-value=1.1 Score=39.01 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ ++.||-+|--.+-+.+++.-.++.+.+.|...|.+--|-.. .+|.. ..|...+..+++ .++|||.-
T Consensus 115 ~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t--f~y~r~~~D~~~vp~~k~-~~lPVi~Dp 190 (264)
T PRK05198 115 DLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS--FGYNNLVVDMRGLPIMRE-TGAPVIFDA 190 (264)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC--cCCCCeeechhhhHHHhh-CCCCEEEeC
Confidence 45666644 58999999887778889999999999999988888777542 13322 357888888877 55999852
Q ss_pred --------------CCCCCH--HHHHHHHHhhCCcEEEEe
Q 026945 87 --------------GNVRHM--EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 --------------GgI~s~--~da~~~l~~~gadgVmig 110 (230)
||-++. .-+...+. .|+||+|+=
T Consensus 191 SHsvq~pg~~~~~s~G~r~~v~~la~AAvA-~GadGl~iE 229 (264)
T PRK05198 191 THSVQLPGGQGGSSGGQREFVPVLARAAVA-VGVAGLFIE 229 (264)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHH-cCCCEEEEE
Confidence 333321 22234454 799999993
No 413
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.98 E-value=0.75 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.++++ .++.|+ .-+.|+..+.++.+ .|||+|++
T Consensus 96 ~~~lk~-~Gi~v~--~~v~s~~~A~~a~~-~GaD~vVa 129 (320)
T cd04743 96 ARALEA-IGISTY--LHVPSPGLLKQFLE-NGARKFIF 129 (320)
T ss_pred HHHHHH-CCCEEE--EEeCCHHHHHHHHH-cCCCEEEE
Confidence 456654 467776 45678888887775 89998753
No 414
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.98 E-value=0.98 Score=39.98 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++++. +.++.+=-|.. ...+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 132 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~ 200 (292)
T PRK11320 132 QEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADA 200 (292)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHh
Confidence 344455555555543 55666655642 34678888899999999999999872 145888999998
Q ss_pred CCccEEEc---CCC---CCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVLAN---GNV---RHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi~n---GgI---~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+++| |+- .|.++ |.+.|+..|..|-.++
T Consensus 201 ~~~Pl~~n~~~~~~~p~~s~~~----L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 201 VKVPILANITEFGATPLFTTEE----LASAGVAMVLYPLSAF 238 (292)
T ss_pred cCCCEEEEeccCCCCCCCCHHH----HHHcCCcEEEEChHHH
Confidence 99998543 332 34443 3357999999986544
No 415
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=93.93 E-value=1 Score=40.18 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ .++.+|. | .. .+++..+++++.
T Consensus 140 ~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q--P~---~~~~~~~~l~~~ 207 (322)
T PRK05105 140 EAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAFLE-------E--PC---KTPDDSRAFARA 207 (322)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCccEEE-------C--CC---CCHHHHHHHHHh
Confidence 4556667788887765 23333333346888899999999988 7787776 2 11 234567889899
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.++++. ..+ ..++|+|.+
T Consensus 208 ~~~PIa~DEs~~~~~~~-~~~-~~~~d~i~i 236 (322)
T PRK05105 208 TGIAIAWDESLREPDFQ-FEA-EPGVRAIVI 236 (322)
T ss_pred CCCCEEECCCCCchhhh-hhh-cCCCCEEEE
Confidence 99999998889888643 333 356786643
No 416
>PLN02591 tryptophan synthase
Probab=93.92 E-value=0.42 Score=41.35 Aligned_cols=84 Identities=17% Similarity=0.324 Sum_probs=57.0
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhhCCccEEEcCCCC
Q 026945 27 RVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNALRIPVLANGNVR 90 (230)
Q Consensus 27 R~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~ 90 (230)
-.| ++.+.+.++++.+.+.|+|.|.+-=-..+- .++.+-.--++.++++++..++|++.=+=.+
T Consensus 9 ~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N 88 (250)
T PLN02591 9 TAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYN 88 (250)
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEeccc
Confidence 344 577889999999999999999984221110 0111111236778888877789977655443
Q ss_pred -----CHHHHHHHHHhhCCcEEEEe
Q 026945 91 -----HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 91 -----s~~da~~~l~~~gadgVmig 110 (230)
..+.+.+.+++.|+|||++-
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~Gviip 113 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVP 113 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeC
Confidence 45566667778999999993
No 417
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.91 E-value=0.94 Score=39.93 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++++. +.++.+=-|.. ...+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~ 195 (285)
T TIGR02317 127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKA 195 (285)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHh
Confidence 344445555555543 44566655652 34678888899999999999999872 135778899999
Q ss_pred CCccEEEc---CCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVLAN---GNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi~n---GgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+++| |+-.-.-++.+ |.+.|+..|..|-.++
T Consensus 196 i~~Pl~~n~~~~~~~p~~s~~e-L~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 196 VKVPLLANMTEFGKTPLFTADE-LREAGYKMVIYPVTAF 233 (285)
T ss_pred cCCCEEEEeccCCCCCCCCHHH-HHHcCCcEEEEchHHH
Confidence 88998543 33211112333 3357999999985444
No 418
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.91 E-value=0.46 Score=41.80 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHH---HHHhhC
Q 026945 31 NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQK---CLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~---~l~~~g 103 (230)
|.+...+.++.+.+.| ++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||+++ |+..+ +++.+ ..++.|
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~-Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t-~~~i~la~~a~~~G 96 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFM-LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNL-KEAVELGKYATELG 96 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccccc-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHHhC
Confidence 5567888999999999 999999998776421 11111223444455544 4898765 55544 44443 334589
Q ss_pred CcEEEEehhhhhCCc
Q 026945 104 CEGVLSAESLLENPA 118 (230)
Q Consensus 104 adgVmigR~~l~nP~ 118 (230)
+|+||+.-..+..|.
T Consensus 97 ad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 97 YDCLSAVTPFYYKFS 111 (290)
T ss_pred CCEEEEeCCcCCCCC
Confidence 999999887766654
No 419
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.86 E-value=0.47 Score=41.57 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCC
Q 026945 31 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~ga 104 (230)
|.+....+++.+.+. |++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.=+-.+.+++.+ ..++.|+
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~-~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGF-LLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 556788899999999 999999999776642 121111234455555544 489886433345555543 3345899
Q ss_pred cEEEEehhhhhCC
Q 026945 105 EGVLSAESLLENP 117 (230)
Q Consensus 105 dgVmigR~~l~nP 117 (230)
|+||+.-..+..|
T Consensus 98 d~v~~~~P~y~~~ 110 (288)
T cd00954 98 DAISAITPFYYKF 110 (288)
T ss_pred CEEEEeCCCCCCC
Confidence 9999988776655
No 420
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.80 E-value=0.96 Score=39.80 Aligned_cols=85 Identities=9% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEE
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi 84 (230)
+-++.+++... .+|.|=++ + .+-+..+.++|+|.|-+-..+. +.+++..+.+ ..|+.
T Consensus 182 ~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~------------e~l~~av~~~~~~~~le 242 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP------------DTLREAVAIVAGRAITE 242 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH------------HHHHHHHHHhCCCceEE
Confidence 44555555432 33444443 2 3334455589999998755432 3333333322 46899
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++||| +++.+.++-+ +|+|.+.+|.-..
T Consensus 243 aSGGI-~~~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 243 ASGRI-TPETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeChhhc
Confidence 99999 6888888775 9999999987433
No 421
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.78 E-value=0.38 Score=42.31 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
+.+-++.+++... .+|.|-++ +.+-+..+.++|+|.|-+-..+.++. -+.+..++. ...+.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~-------slee~~ea~~~gaDiImLDn~s~e~l--------~~av~~~~~--~~~le 241 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVD-------RLDQIEPVLAAGVDTIMLDNFSLDDL--------REGVELVDG--RAIVE 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHhcCCCEEEECCCCHHHH--------HHHHHHhCC--CeEEE
Confidence 3445555555442 34555444 23445555689999999755433211 122222222 35789
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||| +.+.+.++-+ +|+|.+.+|.-...-|++
T Consensus 242 aSGgI-~~~ni~~yA~-tGVD~Is~galths~~~~ 274 (281)
T PRK06543 242 ASGNV-NLNTVGAIAS-TGVDVISVGALTHSVRAL 274 (281)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCccc
Confidence 99999 6888888775 999999998744444443
No 422
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.78 E-value=0.58 Score=40.76 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
+..=+-.| ++.+.+.++++.+.+.|+|.|.+-=-..+- .++..-..-++.++++++..++|++.
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl 96 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI 96 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE
Confidence 33345555 577889999999999999999984221110 01211122367788888777899776
Q ss_pred cCCCC-----CHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVR-----HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~-----s~~da~~~l~~~gadgVmi 109 (230)
=+=.+ ..+...+...+.|+|||.+
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgvii 125 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLII 125 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEe
Confidence 55443 3466666667799999999
No 423
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.71 E-value=0.43 Score=42.30 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=56.1
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+.++.+++.. ..+|.|=++ +.+-+..+.++|+|.|-+-..+. +.++++.+.. ++.+.+
T Consensus 197 ~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~------------e~~~~av~~~~~~~~iea 257 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT------------EQMREAVKRTNGRALLEV 257 (296)
T ss_pred HHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh------------HHHHHHHHhhcCCeEEEE
Confidence 4444555433 345666554 23445566689999998755432 3333332222 578999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||| +.+.+.++-+ +|+|.+.+|.-.-.-||
T Consensus 258 SGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 288 (296)
T PRK09016 258 SGNV-TLETLREFAE-TGVDFISVGALTKHVQA 288 (296)
T ss_pred ECCC-CHHHHHHHHh-cCCCEEEeCccccCCCc
Confidence 9999 6888888765 99999999874333344
No 424
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.71 E-value=0.55 Score=41.48 Aligned_cols=93 Identities=10% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEc
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~n 86 (230)
+.++.+++.. ..||.|=++ + .+-+..+.++|+|.|-+-.-+.++. -+.+..++.. -++.+.++
T Consensus 188 ~ai~~~r~~~~~~kIeVEv~---t----l~ea~eal~~gaDiI~LDnm~~e~v--------k~av~~~~~~~~~v~ieaS 252 (289)
T PRK07896 188 AALRAVRAAAPDLPCEVEVD---S----LEQLDEVLAEGAELVLLDNFPVWQT--------QEAVQRRDARAPTVLLESS 252 (289)
T ss_pred HHHHHHHHhCCCCCEEEEcC---C----HHHHHHHHHcCCCEEEeCCCCHHHH--------HHHHHHHhccCCCEEEEEE
Confidence 4445555433 345555443 2 2334445689999999864332210 1222222222 35789999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||| +++.+.++-+ +|+|.+.+|.-...-|+
T Consensus 253 GGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 253 GGL-TLDTAAAYAE-TGVDYLAVGALTHSVPV 282 (289)
T ss_pred CCC-CHHHHHHHHh-cCCCEEEeChhhcCCCc
Confidence 999 6888888775 99999999974443344
No 425
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.64 E-value=0.82 Score=38.24 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----CCC----CCcccHHHHHHHHhhCCccEEE--cC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----DGK----KFRADWNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----~~~----~~~~~~~~i~~i~~~~~ipvi~--nG 87 (230)
+.|+.+-+.. .+.++..+.++.+.++|+|.|.+|......+ +|. ......+.++.+++.+++||.+ +.
T Consensus 54 ~~p~~~qi~g-~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 54 ERPLIVQLGG-SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred CCCEEEEEcC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 6888888764 4567888999999999999999996432211 110 0112346677777777777654 44
Q ss_pred CCC---CHHHHHHHHHhhCCcEEEE
Q 026945 88 NVR---HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~---s~~da~~~l~~~gadgVmi 109 (230)
+.. +..++.+.+++.|+|.+.+
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEE
Confidence 432 3344455666789999866
No 426
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.63 E-value=0.47 Score=42.01 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+-++.+.++|+|.|-+-..+.++. -+.+..++. ++.+.++||| +++.+.++-+ +|+|.+.+|.-...
T Consensus 215 leea~eA~~aGaDiImLDnmspe~l--------~~av~~~~~--~~~lEaSGGI-t~~ni~~yA~-tGVD~IS~galths 282 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFTLDMM--------REAVRVTAG--RAVLEVSGGV-NFDTVRAFAE-TGVDRISIGALTKD 282 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHH--------HHHHHhhcC--CeEEEEECCC-CHHHHHHHHh-cCCCEEEeCccccC
Confidence 4445666689999999866543321 122222222 5789999999 6888888775 99999999975555
Q ss_pred CCcc
Q 026945 116 NPAL 119 (230)
Q Consensus 116 nP~l 119 (230)
-||+
T Consensus 283 a~~l 286 (294)
T PRK06978 283 VRAT 286 (294)
T ss_pred Cccc
Confidence 5554
No 427
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.53 E-value=0.47 Score=41.26 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=65.8
Q ss_pred HHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHH
Q 026945 13 KLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVK 76 (230)
Q Consensus 13 ~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~ 76 (230)
.+++.-...+..=+-.| ++.+.+.++++.+.+.|+|.|.+-=-..+-. ++..-.--++.+++++
T Consensus 3 ~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir 82 (259)
T PF00290_consen 3 ELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIR 82 (259)
T ss_dssp HHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred hHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 44444344454555565 5778899999999999999999853221110 1111112256778888
Q ss_pred -hhCCccEEEcCCCCC-----HHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 77 -NALRIPVLANGNVRH-----MEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 77 -~~~~ipvi~nGgI~s-----~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+..++|++.=+=.+. .+...+.+++.|+||++| |++.-
T Consensus 83 ~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi-------pDLP~ 126 (259)
T PF00290_consen 83 KKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII-------PDLPP 126 (259)
T ss_dssp HHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE-------TTSBG
T ss_pred ccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE-------cCCCh
Confidence 677899988775433 455666667799999999 77654
No 428
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.51 E-value=0.84 Score=41.09 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe-cCCC---CCcCCCCCcccHHHHHHHHhhCC---ccEEEcCCCCCHHHHHHHHHhhC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVH-GRTR---DEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh-~rt~---~~~~~~~~~~~~~~i~~i~~~~~---ipvi~nGgI~s~~da~~~l~~~g 103 (230)
+.++..++++.|.++|++.|.+. +... +-.++++...+|+.++++.+.++ +-+.+..|+.+.++++.+.+ .|
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~-~g 100 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYD-AG 100 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHH-CC
Confidence 45788999999999999999994 3221 11123444568999999987653 33345567778999988886 79
Q ss_pred CcEEEEeh
Q 026945 104 CEGVLSAE 111 (230)
Q Consensus 104 adgVmigR 111 (230)
+|.|-++-
T Consensus 101 vd~iri~~ 108 (333)
T TIGR03217 101 ARTVRVAT 108 (333)
T ss_pred CCEEEEEe
Confidence 99998875
No 429
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.50 E-value=4.1 Score=38.48 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +..|.+-+- .+ .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 120 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~----l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 120 DIRNLEKSIEVAKKH-GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGL----LTPKRAYELVKALKKK 194 (467)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC----cCHHHHHHHHHHHHHh
Confidence 445555666666543 333432222 22 24567889999999999999998664322 1222346788889998
Q ss_pred CCccEEEcCCCC---CHHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 LRIPVLANGNVR---HMEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~~ipvi~nGgI~---s~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
+++||-.-+--+ .......+++ .|||.|=. |+++ +||.+-.-+...+ ..|-.. .. -.+.+.-+.+|
T Consensus 195 ~~vpI~~H~Hnt~GlA~AN~laAie-aGad~vD~sv~~~g~ga-gN~atE~lv~~L~--~~g~~t-gi-Dl~~L~~~~~~ 268 (467)
T PRK14041 195 FGVPVEVHSHCTTGLASLAYLAAVE-AGADMFDTAISPFSMGT-SQPPFESMYYAFR--ENGKET-DF-DRKALKFLVEY 268 (467)
T ss_pred cCCceEEEecCCCCcHHHHHHHHHH-hCCCEEEeeccccCCCC-CChhHHHHHHHHH--hcCCCC-Cc-CHHHHHHHHHH
Confidence 889987655322 2334445554 79987643 3332 2555322111100 011110 01 12333344445
Q ss_pred HHHH-hhCCChhHHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVPWRMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~~~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++-. ..|..-...++.. ..-|.|. +|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 269 ~~~vr~~y~~~~~~~~~~~~~v~~~q-~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 340 (467)
T PRK14041 269 FTKVREKYSEYDVGMKSPDSRILVSQ-IPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTS 340 (467)
T ss_pred HHHHHHHHhhcCCCCCCCCcCeeeCC-CCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChh
Confidence 4432 3331100000000 0011122 444 24566666665411 25566666666777777888877766
No 430
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.49 E-value=0.54 Score=41.00 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEC--------------CCCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIR--------------VFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR--------------~g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~ 67 (230)
+...+.|++++++ ++||.--+- .|.+ .+++++-++.++++|++.|.+-+-
T Consensus 117 ~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v------------ 183 (264)
T PRK00311 117 EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV------------ 183 (264)
T ss_pred HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC------------
Confidence 3455667777654 788852221 2223 236778888999999999997442
Q ss_pred cHHHHHHHHhhCCccEEEcC
Q 026945 68 DWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nG 87 (230)
.-+.+++|.+.+++|+|+-|
T Consensus 184 ~~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 184 PAELAKEITEALSIPTIGIG 203 (264)
T ss_pred CHHHHHHHHHhCCCCEEEec
Confidence 12788999999999999765
No 431
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=93.47 E-value=1.1 Score=40.65 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCc-----------CCC---CCcccHHHHHHHHhhC---CccEEEcCCCC-CHHHHH
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGK---KFRADWNAIKAVKNAL---RIPVLANGNVR-HMEDVQ 96 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~---~~~~~~~~i~~i~~~~---~ipvi~nGgI~-s~~da~ 96 (230)
..-.++...+.|+|.|-+---+.... +.| .-...-+.++.+.+.+ ++||+..||=+ +.+++.
T Consensus 219 Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L 298 (348)
T PRK09250 219 TGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLL 298 (348)
T ss_pred HHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHH
Confidence 44556677899999998743211000 001 0111235566667776 79999888866 444454
Q ss_pred H----H---HHhhCCcEEEEehhhhhCC
Q 026945 97 K----C---LEETGCEGVLSAESLLENP 117 (230)
Q Consensus 97 ~----~---l~~~gadgVmigR~~l~nP 117 (230)
+ + ++ .|+.||++||-....|
T Consensus 299 ~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 299 DAVRTAVINKR-AGGMGLIIGRKAFQRP 325 (348)
T ss_pred HHHHHHHHhhh-cCCcchhhchhhhcCC
Confidence 3 4 43 6999999999555444
No 432
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=93.42 E-value=1.5 Score=39.12 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred cCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 45 AGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 45 ~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+|.|-+-.. +.++- ..+.+.+++..+.+ ..|+.++||| +++.+.++-+ +|+|.+.+|.-...-|+
T Consensus 228 agaDiImLDnm~~~~~~~-----~~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~-tGVD~Is~Galthsa~~ 298 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENG-----DVDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQ-TGVTYISSGALTHSVKA 298 (308)
T ss_pred CCCCEEEeCCCccccccc-----CCCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHH-cCCCEEEeCccccCCCc
Confidence 89999998776 22221 12345555554443 3789999999 6888888775 99999999874433344
No 433
>PRK14567 triosephosphate isomerase; Provisional
Probab=93.42 E-value=0.12 Score=44.70 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=36.8
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+++|+..|+| +++++.++++...+||+.+|++.+ +|.-|.++
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~I 243 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEI 243 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHH
Confidence 5899999999 899999999988899999999887 66666654
No 434
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.65 Score=38.64 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCce--EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------------c------C------
Q 026945 9 SLVEKLALNLNVP--VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------D------ 61 (230)
Q Consensus 9 eiv~~v~~~~~~p--vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------------~------~------ 61 (230)
-+++++++.++.| +.|-+=+ .+..+++..+.++|++.+|+|--.... + +
T Consensus 52 pvV~slR~~~~~~~ffD~HmMV----~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~ 127 (224)
T KOG3111|consen 52 PVVESLRKHTGADPFFDVHMMV----ENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVED 127 (224)
T ss_pred HHHHHHHhccCCCcceeEEEee----cCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHH
Confidence 3567777776655 3343332 456788899999999999998521110 0 0
Q ss_pred ------------------CCCCcc----cHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 62 ------------------GKKFRA----DWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 62 ------------------~~~~~~----~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|+.|.- -..-++.+++..+-+ +-.-||+ +++.+.++-+ .||+.+..|.+.++-++
T Consensus 128 ~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~-AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 128 LEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAE-AGANMIVAGSAVFGAAD 205 (224)
T ss_pred HHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHH-cCCCEEEecceeecCCC
Confidence 111110 122345556554444 4489999 5778887775 89999999998766443
No 435
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=93.35 E-value=0.59 Score=40.88 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=63.9
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCC-CEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC----CC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NV 89 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG----gI 89 (230)
..++.||.+|-......++....++.....|+ +.+ .+|-..+..........|+..+..+++..++||+... +-
T Consensus 128 s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~ 207 (270)
T PF00793_consen 128 SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSR 207 (270)
T ss_dssp HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTT
T ss_pred ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHHHHHHHhcCCCEEECchhhhcc
Confidence 45789999999888777888899999999994 444 3443222211011124577888888888889999653 22
Q ss_pred CC-------HHHHHHHHHhhCCcEEEEeh
Q 026945 90 RH-------MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 90 ~s-------~~da~~~l~~~gadgVmigR 111 (230)
.+ +..+...+. .|+||+|+=.
T Consensus 208 ~~~~~q~~V~~~a~aaia-~GidGlmiEs 235 (270)
T PF00793_consen 208 KDGGRQELVPPLARAAIA-AGIDGLMIES 235 (270)
T ss_dssp CGGGGHCGHHHHHHHHHH-HTESEEEEEE
T ss_pred ccCCchhhHHHHHHHHHh-hcCCEEEEee
Confidence 23 556666665 7999999943
No 436
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.35 E-value=0.4 Score=41.91 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+.+.. ++||+++=+-.|.+++.+.. +..|+|
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~-Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYS-LTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGG-S-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccccc-CCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 5567889999999999999999998776432 11111233444555544 58988654444555555433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 99 ~v~v~~P~~~~~s 111 (289)
T PF00701_consen 99 AVLVIPPYYFKPS 111 (289)
T ss_dssp EEEEEESTSSSCC
T ss_pred EEEEeccccccch
Confidence 9999876655543
No 437
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.31 E-value=0.6 Score=40.44 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=57.6
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhh-CCccEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNA-LRIPVL 84 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~-~~ipvi 84 (230)
+..=+-.| ++.+.+.++++.+.+.|+|.|.+---..+- .++.+-.--++.++++++. .++|++
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv 91 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG 91 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 33344555 577889999999999999999985322110 0121112235678888866 688976
Q ss_pred EcCCCCCH------HHHHHHHHhhCCcEEEEe
Q 026945 85 ANGNVRHM------EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 85 ~nGgI~s~------~da~~~l~~~gadgVmig 110 (230)
.=+ ..++ +...+.+.+.|+|||.+=
T Consensus 92 ~m~-Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 92 LLT-YYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred EEE-eccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 322 3344 666667777999999984
No 438
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=93.31 E-value=0.4 Score=35.81 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHh-hCCcEEEEehh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEE-TGCEGVLSAES 112 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~-~gadgVmigR~ 112 (230)
.++.+.+.+...+.|.++.....+. ....+.++.+++..+ +++++.|-..| .+-+.+++. .|+|.|++|.|
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~-----~~~~~l~~~~k~~~p~~~iv~GG~~~t-~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNL-----PEAKRLARAIKERNPNIPIVVGGPHAT-ADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHH-----HHHHHHHHHHHTTCTTSEEEEEESSSG-HHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcH-----HHHHHHHHHHHhcCCCCEEEEECCchh-cChHHHhccCcCcceecCCCh
Confidence 6778888888999999987432211 223556666666554 66666554434 344556655 89999999986
No 439
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=93.26 E-value=0.27 Score=43.00 Aligned_cols=91 Identities=22% Similarity=0.347 Sum_probs=60.1
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--C--CccEEE
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--L--RIPVLA 85 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~--~ipvi~ 85 (230)
.++.++. ..|.+.||=+-. ++.+=+..+.++|+|.|-+...+.+ .+++..+. . ++-+-+
T Consensus 177 Av~~aR~--~~~~~~kIEVEv---esle~~~eAl~agaDiImLDNm~~e------------~~~~av~~l~~~~~~~lEa 239 (280)
T COG0157 177 AVRRARA--AAPFTKKIEVEV---ESLEEAEEALEAGADIIMLDNMSPE------------ELKEAVKLLGLAGRALLEA 239 (280)
T ss_pred HHHHHHH--hCCCCceEEEEc---CCHHHHHHHHHcCCCEEEecCCCHH------------HHHHHHHHhccCCceEEEE
Confidence 3444444 356666665532 2344566777899999998664433 33333332 2 466779
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| |++.+.++-+ +|+|.+.+|.--..-|++
T Consensus 240 SGgI-t~~ni~~yA~-tGVD~IS~galths~~~l 271 (280)
T COG0157 240 SGGI-TLENIREYAE-TGVDVISVGALTHSAPAL 271 (280)
T ss_pred eCCC-CHHHHHHHhh-cCCCEEEeCccccCCccc
Confidence 9999 6889888775 999999999766666764
No 440
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.26 E-value=0.64 Score=40.63 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+.....++.+.+.|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.=+-.|.+++.+.. +..|+|
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESP-TLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-cCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCC
Confidence 556788899999999999999988776542 111111234445555543 48988654444556654433 357999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 96 ~v~v~pP~y~~~ 107 (285)
T TIGR00674 96 GFLVVTPYYNKP 107 (285)
T ss_pred EEEEcCCcCCCC
Confidence 999987776655
No 441
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.26 E-value=2.4 Score=38.17 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=60.6
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC---EEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~---~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++.+.+ .+.||.++.-. .+.++....++.+.+.|.. .+.+|+-+... ......|+..|..+++..++||..++
T Consensus 126 L~~~A~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP--~~~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 126 LKKIAR-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP--APFEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred HHHHHh-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC--CCcccCCHHHHHHHHHHhCCCEEECC
Confidence 444433 48999999877 4677888888888899975 67778754211 11224689999999999999999875
Q ss_pred CCCCHHHHHHHHHhhCCc
Q 026945 88 NVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 88 gI~s~~da~~~l~~~gad 105 (230)
--....-...+.. .||+
T Consensus 202 Ht~G~~~~~aAva-lGA~ 218 (329)
T TIGR03569 202 HTLGIEAPIAAVA-LGAT 218 (329)
T ss_pred CCccHHHHHHHHH-cCCC
Confidence 3333333333333 5777
No 442
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.15 E-value=1.3 Score=39.10 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+- . +..+++++++.++++|++.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 62 r~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~ 136 (303)
T PRK03620 62 YSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVI 136 (303)
T ss_pred HHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345566555544 588888774 3 67899999999999999999886643211 1112235677888888899975
Q ss_pred -Ec-CCC-CCHHHHHHHH
Q 026945 85 -AN-GNV-RHMEDVQKCL 99 (230)
Q Consensus 85 -~n-GgI-~s~~da~~~l 99 (230)
.| .++ -+++.+.++.
T Consensus 137 lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 137 VYNRDNAVLTADTLARLA 154 (303)
T ss_pred EEcCCCCCCCHHHHHHHH
Confidence 43 232 3677777666
No 443
>PRK14565 triosephosphate isomerase; Provisional
Probab=93.10 E-value=0.16 Score=43.54 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=41.1
Q ss_pred cccHHHHHH----HHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 66 RADWNAIKA----VKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 66 ~~~~~~i~~----i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.++.+.+.+ +++.. +++|+..|+| +++.+.++++..++||+.+|++.+ +|.-|.++
T Consensus 170 ~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl-~~~~f~~i 230 (237)
T PRK14565 170 IPSNDAIAEAFEIIRSYDSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL-DVDSFCKI 230 (237)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh-cHHHHHHH
Confidence 344455544 34433 5899999999 578888888888999999999988 56656544
No 444
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.03 E-value=0.74 Score=38.52 Aligned_cols=96 Identities=23% Similarity=0.365 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--CC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ 80 (230)
|.+.+.++++... +.|++. -|..+...+..+-.+.+.+.|++.|-=||....- .-..+.++++.+. -+
T Consensus 101 D~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 101 DEEALEELIEAAG---GMPVTF-HRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGR 170 (201)
T ss_dssp -HHHHHHHHHHHT---TSEEEE--GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCC
Confidence 4556666666654 678887 5654333345566777888899998877754321 2245667766544 35
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.|++.|||+ .+.+..+++.+|+.-+=.
T Consensus 171 i~Im~GgGv~-~~nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 171 IEIMPGGGVR-AENVPELVEETGVREIHG 198 (201)
T ss_dssp SEEEEESS---TTTHHHHHHHHT-SEEEE
T ss_pred cEEEecCCCC-HHHHHHHHHhhCCeEEee
Confidence 8899999995 677888888899987754
No 445
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=93.02 E-value=0.23 Score=44.69 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHH-----------HHHHHhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV-----------QKCLEET 102 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da-----------~~~l~~~ 102 (230)
..+++|.+..+.|+|.++.-..|.-........+-++.+++.++.+-+|+...|||++..|+ -..++ +
T Consensus 270 KPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFR-S 348 (541)
T KOG0623|consen 270 KPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFR-S 348 (541)
T ss_pred ChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHh-c
Confidence 47899999999999999988776532111111223445555555566999999999976664 34555 8
Q ss_pred CCcEEEEehhhhhC
Q 026945 103 GCEGVLSAESLLEN 116 (230)
Q Consensus 103 gadgVmigR~~l~n 116 (230)
|||-|.||.-+..-
T Consensus 349 GADKvSIGsDAVyA 362 (541)
T KOG0623|consen 349 GADKVSIGSDAVYA 362 (541)
T ss_pred CCceeeechhHHHH
Confidence 99999999877654
No 446
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.99 E-value=0.39 Score=39.99 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
....++|++.+-+.+-... |+ ..+++.++.-+ ++|++..|||. ++++.+.++ .|+.+|++|+.+..+.+
T Consensus 115 ~~A~~~G~~~vK~FPA~~~------GG--~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~-ag~~~vg~Gs~L~~~~~ 184 (196)
T PF01081_consen 115 MQALEAGADIVKLFPAGAL------GG--PSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLK-AGAVAVGGGSWLFPKDL 184 (196)
T ss_dssp HHHHHTT-SEEEETTTTTT------TH--HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHT-STTBSEEEESGGGSHHH
T ss_pred HHHHHCCCCEEEEecchhc------Cc--HHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHh-CCCEEEEECchhcCHHH
Confidence 3445789999988663221 21 37888888755 59999999995 689999997 89999999986655443
No 447
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=92.88 E-value=0.11 Score=44.72 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=34.3
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
++||+..|+|+. +++.++++...+||+.+|++.+ +|.-|.+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ 239 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESFLD 239 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHHHH
Confidence 489999999976 9999999877799999999998 4555543
No 448
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=92.86 E-value=0.67 Score=41.94 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHH
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~ 100 (230)
.+..+-+++.|+|.|.|.-.|.-..+.. .+ ..+|+.+++|++.+ ++|++.-|+=..+++..+.+.
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHH
Confidence 3444455678999998765554432211 12 27999999999999 799999998776644333333
No 449
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.81 E-value=0.77 Score=40.12 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH---HhhCCcE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l---~~~gadg 106 (230)
.|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+.+..+--+.+.|.. +.+++.+.. +..|+|+
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~-Lt~eEr~~l~~~~~~~~~~vi~gvg~~-~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPS-LSFQEKLELLKAYSDITDKVIFQVGSL-NLEESIELARAAKSFGIYA 94 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCccc-CCHHHHHHHHHHHHHHcCCEEEEeCcC-CHHHHHHHHHHHHHcCCCE
Confidence 36677889999999999999999998776421 111112234444555554223444554 455554433 3589999
Q ss_pred EEEehhhhhC
Q 026945 107 VLSAESLLEN 116 (230)
Q Consensus 107 VmigR~~l~n 116 (230)
||+.-..+..
T Consensus 95 v~v~~P~y~~ 104 (279)
T cd00953 95 IASLPPYYFP 104 (279)
T ss_pred EEEeCCcCCC
Confidence 9998887765
No 450
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.79 E-value=0.53 Score=40.71 Aligned_cols=88 Identities=7% Similarity=0.038 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe---cCCCCCcCCCCCc--ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVH---GRTRDEKDGKKFR--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh---~rt~~~~~~~~~~--~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
+.+...+.|+.+.++|+.++-=. +||... .+.|. --+.++.++++..++|++. ++.+.+++..+.+ .+|
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~--sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vd 100 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAA--SFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLD 100 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCc--ccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCC
Confidence 34678899999999999888543 466542 23332 2366777788889999998 8999999988765 599
Q ss_pred EEEEehhhhhCCccccchh
Q 026945 106 GVLSAESLLENPALFAGFR 124 (230)
Q Consensus 106 gVmigR~~l~nP~lf~~~~ 124 (230)
.+-||...+.|..+...+.
T Consensus 101 ilqIgs~~~~n~~LL~~va 119 (250)
T PRK13397 101 VIQVGARNMQNFEFLKTLS 119 (250)
T ss_pred EEEECcccccCHHHHHHHH
Confidence 9999999999988877654
No 451
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.77 E-value=1.2 Score=38.72 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
--.++++.+.+.+ ++||.+-+.. .+..++++.++.++++|++.+.+..-... ..+...-.++.++|.+..++||
T Consensus 54 Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a~~a~~~G~d~v~~~~P~~~---~~~~~~l~~~~~~ia~~~~~pi 129 (284)
T cd00950 54 EHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELTKRAEKAGADAALVVTPYYN---KPSQEGLYAHFKAIAEATDLPV 129 (284)
T ss_pred HHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHHhcCCCCE
Confidence 3345566555554 4777766643 35688999999999999999988764321 1111223567788888888998
Q ss_pred E-E-----cCCCCCHHHHHHHHHhhCCcEE
Q 026945 84 L-A-----NGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 84 i-~-----nGgI~s~~da~~~l~~~gadgV 107 (230)
+ . .|-.-|++.+.++.+...+.|+
T Consensus 130 ~lYn~P~~~g~~ls~~~~~~L~~~p~v~gi 159 (284)
T cd00950 130 ILYNVPGRTGVNIEPETVLRLAEHPNIVGI 159 (284)
T ss_pred EEEEChhHhCCCCCHHHHHHHhcCCCEEEE
Confidence 7 2 4556678888877754334444
No 452
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=92.75 E-value=2.4 Score=37.70 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCC---CCc-CCCCCcccHHHHHHHHhhC
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR---DEK-DGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~---~~~-~~~~~~~~~~~i~~i~~~~ 79 (230)
...+-++.+++.. +.||.+-+ .|.+.++..++++.++++| +|+|.+---.. ... .+.....-.+.++.+++.+
T Consensus 78 ~~~~~i~~~~~~~~~~pvI~Si-~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 78 YYLDYVLELQKKGPNKPHFLSV-VGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEE-EeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 3334444555443 58888776 5667788999999999998 99998732211 110 0111112245677788888
Q ss_pred CccEE--EcCCCCCHHHHHHHHH---hhCCcEEEE
Q 026945 80 RIPVL--ANGNVRHMEDVQKCLE---ETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi--~nGgI~s~~da~~~l~---~~gadgVmi 109 (230)
++||+ ..-++ +..++.+..+ ..|+++|..
T Consensus 157 ~~Pv~vKlsp~~-~~~~~a~~~~~~~~~g~~~i~~ 190 (310)
T PRK02506 157 TKPLGVKLPPYF-DIVHFDQAAAIFNKFPLAFVNC 190 (310)
T ss_pred CCccEEecCCCC-CHHHHHHHHHHhCcCceEEEEE
Confidence 89987 44555 4455544433 346666543
No 453
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.74 E-value=1.8 Score=39.02 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=57.6
Q ss_pred HHHHHHhhc-CCceEEEEECCCC------ChHHHHHHHHHHHHcCCCEEEEec--CCC-CCcCCCCCcccHHHHHHHHhh
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLLAVHG--RTR-DEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~------~~~~~~~~a~~l~~~G~~~i~vh~--rt~-~~~~~~~~~~~~~~i~~i~~~ 78 (230)
..++.+++. .++||.+-|--.. ..++..+.++.+.+ ++|+|.+.- -.. .......+..-.+.++.+++.
T Consensus 126 ~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 126 ALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 344444332 5788888774211 22445555555543 499998742 111 111111122234677888888
Q ss_pred CC-----ccEE--EcCCCC--CHHHHHHHHHhhCCcEEEEehhh
Q 026945 79 LR-----IPVL--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 79 ~~-----ipvi--~nGgI~--s~~da~~~l~~~gadgVmigR~~ 113 (230)
++ +||+ .+-++. ...++.+.+++.|+|+|.+.-..
T Consensus 205 ~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 205 QAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 76 8987 445554 24555566777899999774433
No 454
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=92.71 E-value=1.5 Score=39.09 Aligned_cols=94 Identities=22% Similarity=0.368 Sum_probs=61.4
Q ss_pred EEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCC----CCCcccHHHHHHHHhhCCccEE--EcCCCCCHHHHH
Q 026945 24 CKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDG----KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQ 96 (230)
Q Consensus 24 vKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~----~~~~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~ 96 (230)
.|.-.++..++..+++..++++| +|++++---......+ +.+..-.+.++.+++..++||+ ..-++.+..++.
T Consensus 100 ~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA 179 (310)
T COG0167 100 GKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIA 179 (310)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHH
Confidence 44455566778999999999999 8999884222211111 0111223445567777789987 445777777888
Q ss_pred HHHHhhCCcEEEEehhhhhCC
Q 026945 97 KCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 97 ~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.+.|+|||.+---....+
T Consensus 180 ~~~~~~g~Dgl~~~NT~~~~~ 200 (310)
T COG0167 180 KAAEEAGADGLIAINTTKSGM 200 (310)
T ss_pred HHHHHcCCcEEEEEeeccccc
Confidence 888889999997765455344
No 455
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.70 E-value=1.6 Score=38.35 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+- .+..++++.++.++++|+|.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 61 ~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~~a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 61 EQVVEIAVSTAKGKVPVYTGVG--GNTSDAIEIARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred HHHHHHHHHHhCCCCcEEEecC--ccHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEE
Confidence 44555554443 478888774 357899999999999999999887643211 1112235677888888899975
Q ss_pred Ec--CCCCCHHHHHHHHH-hhCCcEEE
Q 026945 85 AN--GNVRHMEDVQKCLE-ETGCEGVL 108 (230)
Q Consensus 85 ~n--GgI~s~~da~~~l~-~~gadgVm 108 (230)
.| |---+++.+.++.+ ...+.||=
T Consensus 136 Yn~~g~~l~~~~~~~La~~~~nvvgiK 162 (296)
T TIGR03249 136 YQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred EeCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 44 32347887877765 34445543
No 456
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.69 E-value=3.1 Score=37.38 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=52.9
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC-CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++++.+ .+.||.+|.-. .+.++....+..+.+.|. +.+.+|+ +..- +......|+..|..+++..++||..++
T Consensus 127 L~~va~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~Y-P~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 127 IRYVAK-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKC-TSSY-PAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HHHHHh-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEec-CCCC-CCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 444433 48999999877 477888888888889998 5677786 3321 111224689999999999999997765
No 457
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.64 E-value=0.93 Score=39.70 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.++++|++.+.+..-.... .+...-.++.++|.+.+++||+
T Consensus 57 ~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~l 132 (292)
T PRK03170 57 EELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIIL 132 (292)
T ss_pred HHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34455554433 4787765543 356889999999999999999987643211 1112235667778888888976
Q ss_pred E-----cCCCCCHHHHHHHHHhhCCcEE
Q 026945 85 A-----NGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~-----nGgI~s~~da~~~l~~~gadgV 107 (230)
. +|---+++.+.++.+...+-|+
T Consensus 133 Yn~P~~~g~~l~~~~~~~L~~~p~v~gi 160 (292)
T PRK03170 133 YNVPGRTGVDILPETVARLAEHPNIVGI 160 (292)
T ss_pred EECccccCCCCCHHHHHHHHcCCCEEEE
Confidence 2 3545577777776543334444
No 458
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.61 E-value=0.87 Score=40.08 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHH---hhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~---~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+++.+ ++||+++=+- +.+++.+..+ ..|+|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFS-LTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCccc-CCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCC
Confidence 5567888999999999999999887766421 11111123344455544 4888865443 4666654443 48999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+--..+..|
T Consensus 102 av~~~pP~y~~~ 113 (296)
T TIGR03249 102 GYLLLPPYLING 113 (296)
T ss_pred EEEECCCCCCCC
Confidence 999976555443
No 459
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.58 E-value=2.2 Score=34.88 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+.++.+++. .++|+.+-.-+. +.. ..+++.+.++|++++++|+.... ...-+.++.+++ .++++++.
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~-~~~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~ 109 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTA-DAG--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVD 109 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEec-ccc--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEE
Confidence 3556677664 367776632221 111 24578899999999999985421 111244555554 57777763
Q ss_pred -CCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 87 -GNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -GgI~s~~da~~~l~~~gadgVmig 110 (230)
=+..|++++.+++. .|+|.|.++
T Consensus 110 ~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 110 LIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred EeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 67778999988554 799999884
No 460
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=92.47 E-value=0.56 Score=40.60 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=71.6
Q ss_pred HHHHHHhhc-CCceEEE--EEC-CCC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 9 SLVEKLALN-LNVPVSC--KIR-VFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsv--KiR-~g~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+.++++.. .+.+|.+ |-. ..+ ...+..++++.+++.|+++|.|-..... +.| +++.++.+++.+.
T Consensus 34 ~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~----F~G--s~e~L~~v~~~v~ 107 (254)
T COG0134 34 DFYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKY----FQG--SFEDLRAVRAAVD 107 (254)
T ss_pred cHHHHHHhcCCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccc----cCC--CHHHHHHHHHhcC
Confidence 456666653 2445544 432 111 1235788999999999999998664332 323 4699999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+||..===|-++-.+.+... .|||+|.+==.+|.+.
T Consensus 108 ~PvL~KDFiiD~yQI~~Ar~-~GADavLLI~~~L~~~ 143 (254)
T COG0134 108 LPVLRKDFIIDPYQIYEARA-AGADAVLLIVAALDDE 143 (254)
T ss_pred CCeeeccCCCCHHHHHHHHH-cCcccHHHHHHhcCHH
Confidence 99988777899999998886 8999996644455443
No 461
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.42 E-value=1.5 Score=38.26 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.+++.|+|.+.+..-.... .+...-.++.+.|.+.+++||+
T Consensus 54 ~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~l 129 (285)
T TIGR00674 54 KKVIEFVVDLVNGRVPVIAGTGS-NATEEAISLTKFAEDVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIIL 129 (285)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHHHHHHHHcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34444444433 4788776532 356789999999999999999987643211 1112235677788888889987
Q ss_pred -----EcCCCCCHHHHHHHHHh
Q 026945 85 -----ANGNVRHMEDVQKCLEE 101 (230)
Q Consensus 85 -----~nGgI~s~~da~~~l~~ 101 (230)
.+|---+++.+.++.+.
T Consensus 130 Yn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 130 YNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred EECcHHhcCCCCHHHHHHHHcC
Confidence 24545578877777653
No 462
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.42 E-value=0.93 Score=39.69 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHH---HHHhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~---~l~~~ga 104 (230)
|.+...+.++.+.+.|++.|.+-|-+.+.. ..+..-..+.++.+.+.+ ++||++. |+- +.+++.+ ..++.|+
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESP-TLTHEEHEELIRAVVEAVNGRVPVIAGTGSN-STAEAIELTKFAEKAGA 97 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccc-cCCHHHHHHHHHHHHHHhCCCCcEEeecCCc-hHHHHHHHHHHHHHcCC
Confidence 556788899999999999999988776642 121111234455555554 3788754 443 4455543 3345899
Q ss_pred cEEEEehhhhhCC
Q 026945 105 EGVLSAESLLENP 117 (230)
Q Consensus 105 dgVmigR~~l~nP 117 (230)
|+||+.-..+..|
T Consensus 98 d~v~~~pP~~~~~ 110 (292)
T PRK03170 98 DGALVVTPYYNKP 110 (292)
T ss_pred CEEEECCCcCCCC
Confidence 9999987766554
No 463
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=92.35 E-value=1 Score=40.91 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecCCCCCcCC-CCCcccHHHHHHH----HhhCCcc------EEEcCCCCC-HHHHHHHH
Q 026945 33 QDTIKYAKMLE-DAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAV----KNALRIP------VLANGNVRH-MEDVQKCL 99 (230)
Q Consensus 33 ~~~~~~a~~l~-~~G~~~i~vh~rt~~~~~~-~~~~~~~~~i~~i----~~~~~ip------vi~nGgI~s-~~da~~~l 99 (230)
+++.+|++... ..|+|.+.|.-.|.-..+. ..+..+++.+++| .+.+++| ++.-|+=.. .+++.+++
T Consensus 198 eeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai 277 (357)
T TIGR01520 198 EDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEAL 277 (357)
T ss_pred HHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHH
Confidence 34555555442 3489999876555543331 2345799999999 4566788 888886544 47788888
Q ss_pred HhhCCcEEEEehhh
Q 026945 100 EETGCEGVLSAESL 113 (230)
Q Consensus 100 ~~~gadgVmigR~~ 113 (230)
+ .|+.-|=|+..+
T Consensus 278 ~-~GI~KINi~Tdl 290 (357)
T TIGR01520 278 S-YGVVKMNIDTDT 290 (357)
T ss_pred H-CCCeEEEeCcHH
Confidence 6 788877776543
No 464
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=92.33 E-value=1.8 Score=35.58 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec--CCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHG--RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~--rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|...+.+.++.+.+.|+|.|++-- ....+ .. ....+.++++++..+.|+.+.=-+.+.++..+.+...|+|+|.
T Consensus 9 ~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~--~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 9 DFARLGEEVKAVEEAGADWIHVDVMDGHFVP--NL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--Cc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 456788999999999999999951 11111 11 2457889999887777753211122345555555579999987
Q ss_pred E
Q 026945 109 S 109 (230)
Q Consensus 109 i 109 (230)
+
T Consensus 85 v 85 (210)
T TIGR01163 85 V 85 (210)
T ss_pred E
Confidence 7
No 465
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.31 E-value=2.1 Score=37.76 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-----CC
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LR 80 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ 80 (230)
+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+-..+. +.++++.+. .+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~ea~~agaDiI~LDn~~~------------e~l~~av~~~~~~~~~ 236 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIAALRAQPDVLQLDKFSP------------QQATEIAQIAPSLAPH 236 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhhccCCC
Confidence 455666666654 234555443 34556666789999999833222 333333222 35
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+.+.++||| +++.+.++-+ +|+|.+.+|--
T Consensus 237 ~~leaSGGI-~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 237 CTLSLAGGI-NLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred eEEEEECCC-CHHHHHHHHh-cCCCEEEECcc
Confidence 789999999 6888888775 99999988764
No 466
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.28 E-value=2.1 Score=39.52 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE-c
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N 86 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~-n 86 (230)
++++++++. .+.+|.+-+-+. |..+++ ++.+.++|+++++||+-.... .--..++.+++ .++-+.. .
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~~-Di~~~v--v~~~a~aGAD~vTVH~ea~~~-------ti~~ai~~akk-~GikvgVD~ 283 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKTL-DTGNLE--ARMAADATADAVVISGLAPIS-------TIEKAIHEAQK-TGIYSILDM 283 (391)
T ss_pred HHHHHHHHhCCCCeEEEEeccc-ChhhHH--HHHHHhcCCCEEEEeccCCHH-------HHHHHHHHHHH-cCCEEEEEE
Confidence 456666665 356666655542 333333 888899999999999853210 01133444444 4554444 3
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
=+..++.+..+.+ ..++|.|++.++
T Consensus 284 lnp~tp~e~i~~l-~~~vD~Vllht~ 308 (391)
T PRK13307 284 LNVEDPVKLLESL-KVKPDVVELHRG 308 (391)
T ss_pred cCCCCHHHHHHHh-hCCCCEEEEccc
Confidence 3445665555545 368999988864
No 467
>PRK14057 epimerase; Provisional
Probab=92.26 E-value=1.8 Score=37.53 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 69 WNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 69 ~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++-|+++++. .++.|.+-||| +.+.+.++.+ .|+|.+.+|+++..+++
T Consensus 177 l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~-aGad~~V~GSalF~~~d 229 (254)
T PRK14057 177 HERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIA-QGIDRVVSGSALFRDDR 229 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 4455555443 24678899999 5778887775 89999999998765544
No 468
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=92.24 E-value=0.96 Score=37.86 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++.. .+|.+-+.+++-.......++.+.++|+|++|||+-
T Consensus 40 ~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 40 KIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4566666543 344333333221122335667778899999999974
No 469
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=92.22 E-value=0.77 Score=41.58 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCC--CCc---ccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHH
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFR---ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 99 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~---~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l 99 (230)
.+..+-+++.|+|.|.|.-.|.-..+.. .+. .+|+.+++|++.+ ++|++.-|+=..+.++.+.+
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~ 245 (347)
T PRK13399 176 DQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEII 245 (347)
T ss_pred HHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHH
Confidence 3444445668999997654443322111 122 7899999999999 79999999877664443333
No 470
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.12 E-value=8.5 Score=37.40 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +.-+.+-+- .. .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 116 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~----~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 116 DPRNLQAAIQAAKKH-GAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGI----LTPKAAYELVSALKKR 190 (582)
T ss_pred cHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHHh
Confidence 445556666666554 333332221 12 25577889999999999999998653322 2223346788889998
Q ss_pred CCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehh----hhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHH
Q 026945 79 LRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAES----LLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 151 (230)
Q Consensus 79 ~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~----~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl 151 (230)
+++||-.-+--++ ......+++ .|||.|=.+=+ .-+||.+-.-+...+ ..|... .. -.+.+.-+.+|+
T Consensus 191 ~~~pi~~H~Hnt~Gla~An~laAve-aGa~~vd~ai~GlG~~tGn~~le~vv~~L~--~~g~~t-gi-d~~~L~~l~~~~ 265 (582)
T TIGR01108 191 FGLPVHLHSHATTGMAEMALLKAIE-AGADGIDTAISSMSGGTSHPPTETMVAALR--GTGYDT-GL-DIELLLEIAAYF 265 (582)
T ss_pred CCCceEEEecCCCCcHHHHHHHHHH-hCCCEEEeccccccccccChhHHHHHHHHH--hcCCCc-cc-CHHHHHHHHHHH
Confidence 8888876542222 333345554 79987743322 234555433221111 011110 01 123343344454
Q ss_pred HHH-hhCCChhHHHHHHHHH-HHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 152 KLC-EKYPVPWRMIRSHVHK-LLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 152 ~~~-~~~~~~~~~~r~h~~~-~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
+-. ..|..-...++..=.. |.+ -++|- ..+..++.+.... -+.++.+-+.+..+....+|+++-.+
T Consensus 266 ~~v~~~Y~~~~~~~~~~~~~v~~~-e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~S 336 (582)
T TIGR01108 266 REVRKKYSQFEGQLKGPDSRILVA-QVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 336 (582)
T ss_pred HHHHHHhhcCCCcccCCCccEEEE-cCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCcc
Confidence 422 3331100000000001 122 25664 5666666665411 14445555555666777788877666
No 471
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=92.11 E-value=0.67 Score=41.74 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.++.++-|+.+.+.|+..+.+-.-.+. + ++..+.-.+.++.|++.+++++.+|=|+-+.+.++++-+ .|+|.+---
T Consensus 86 ~eeIle~Ak~ak~~Ga~r~c~~aagr~-~-~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~-aGvd~ynhN- 161 (335)
T COG0502 86 VEEILEAAKKAKAAGATRFCMGAAGRG-P-GRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLAD-AGVDRYNHN- 161 (335)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEeccC-C-CccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHH-cChhheecc-
Confidence 357889999999999655554322221 1 122233357788889899999999988999999988665 899987552
Q ss_pred hhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 112 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 112 ~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
+=.+|.+|.++... .+..+|++.+..-
T Consensus 162 -LeTs~~~y~~I~tt-----------~t~edR~~tl~~v 188 (335)
T COG0502 162 -LETSPEFYENIITT-----------RTYEDRLNTLENV 188 (335)
T ss_pred -cccCHHHHcccCCC-----------CCHHHHHHHHHHH
Confidence 22367777776532 3455666655443
No 472
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.06 E-value=2.3 Score=37.72 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-Cc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 81 (230)
+--.++++.+.+.+ ++||.+-+-. .+..+++++++.+++.|+|.+-+..-... ..+...-.++.+.|.+.+ ++
T Consensus 61 eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~a~~A~~~Gad~vlv~~P~y~---~~~~~~l~~yf~~va~a~~~l 136 (309)
T cd00952 61 EEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIARTRALLDLGADGTMLGRPMWL---PLDVDTAVQFYRDVAEAVPEM 136 (309)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHHHHHHHhCCCEEEECCCcCC---CCCHHHHHHHHHHHHHhCCCC
Confidence 33456666665544 4888877643 34588999999999999999998764221 011123467778888888 58
Q ss_pred cEE-E-----cCCCCCHHHHHHHHH
Q 026945 82 PVL-A-----NGNVRHMEDVQKCLE 100 (230)
Q Consensus 82 pvi-~-----nGgI~s~~da~~~l~ 100 (230)
||+ . .|---+++.+.++.+
T Consensus 137 Pv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 137 AIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred cEEEEcCchhcCCCCCHHHHHHHhc
Confidence 986 2 232335666666653
No 473
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.02 E-value=1.3 Score=38.58 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCceEE-------EEECC-------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 7 VKSLVEKLALNLNVPVS-------CKIRV-------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvs-------vKiR~-------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
+.+.++.+.+ .++||. ...|. |.+. ..+++-++.++++|++.|.+-+- + -
T Consensus 118 ~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v----------p--~ 184 (263)
T TIGR00222 118 LVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECV----------P--V 184 (263)
T ss_pred HHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------c--H
Confidence 4455666654 377877 22221 2232 35778888999999999997442 2 3
Q ss_pred HHHHHHHhhCCccEEEcC
Q 026945 70 NAIKAVKNALRIPVLANG 87 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nG 87 (230)
+.+++|.+.+++|+|+-|
T Consensus 185 ~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 185 ELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHhCCCCEEeec
Confidence 888999999999998765
No 474
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.96 E-value=3.4 Score=35.34 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cCCCCCcCCCCCc---ccHHHH----HHHH
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKFR---ADWNAI----KAVK 76 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~rt~~~~~~~~~~---~~~~~i----~~i~ 76 (230)
.+.+-+..++ .+.|+.+-+|. .+.++..+.++.+++ +++.|.+. .+.........|. -|.+.+ +.++
T Consensus 56 ~i~~e~~~~~--~~~~vivnv~~-~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~ 131 (231)
T TIGR00736 56 YIIEQIKKAE--SRALVSVNVRF-VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK 131 (231)
T ss_pred HHHHHHHHHh--hcCCEEEEEec-CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH
Confidence 4445555554 25688888885 356888899999876 89999874 4432111111111 144444 4444
Q ss_pred hhCCccEEE--cCCCC--CHHHHHHHHHhhCCcEEEE
Q 026945 77 NALRIPVLA--NGNVR--HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 77 ~~~~ipvi~--nGgI~--s~~da~~~l~~~gadgVmi 109 (230)
..++||.+ -.++. +..++.+.+++.|+|++.+
T Consensus 132 -~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 132 -ELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred -cCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE
Confidence 24688763 23332 3335666777899999977
No 475
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=91.92 E-value=0.54 Score=38.60 Aligned_cols=75 Identities=28% Similarity=0.372 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCc---CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+=|+..+++|+-++-.--|-...- .+-..-.|...|++|.++++|||++--.|...-.+. .|+..|+|.+==..
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RIGHfvEAq-iLealgVD~IDESE 101 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQ-ILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEETT-HHHHH-HHHHTT-SEEEEET
T ss_pred HHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeeccccceeehhh-hHHHhCCceecccc
Confidence 4568999999999998877654321 111223578999999999999999999999988885 67778999874433
No 476
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=91.92 E-value=3.3 Score=35.59 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGRT 56 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~rt 56 (230)
+++.+++... +|.+-...+ |..+| ...++.+.+.|+|+++||+-.
T Consensus 54 ~~~el~~~~~-~VflDlK~~-DIpnT~~~~~~~~~~~g~d~vtvH~~~ 99 (240)
T COG0284 54 ILEELKARGK-KVFLDLKLA-DIPNTVALAAKAAADLGADAVTVHAFG 99 (240)
T ss_pred HHHHHHHhCC-ceEEeeecc-cchHHHHHHHHHhhhcCCcEEEEeCcC
Confidence 4555555432 566555443 34444 456777889999999999743
No 477
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.88 E-value=2 Score=36.55 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=49.7
Q ss_pred HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 42 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 42 l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..++|++.+-+.+-. . ....+++.++.-+ ++|++..|||.. .+++.+.++ .|+.+|.+|+.+..+.+
T Consensus 128 A~~~Ga~~vKlFPA~------~---~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~-aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 128 AEELGCEIVKLFPGS------V---YGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFG-AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred HHHCCCCEEEECccc------c---cCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHh-CCCEEEEEChhhcCccc
Confidence 356777777776521 1 1247788887655 589999999974 589999998 89999999997775554
No 478
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=91.74 E-value=4.3 Score=37.65 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=60.1
Q ss_pred CceEEEEECC------CCChHHHHHHHHHHHHcCCCE-EEEecCCCCCcCCCCCcccHHHHHHHHhh-----CCccEEEc
Q 026945 19 NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLAN 86 (230)
Q Consensus 19 ~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~-i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ipvi~n 86 (230)
+..+.+-..- +|+..++.++.+.+++....+ +.+-.-... .....+++..+++++. +++||++.
T Consensus 228 ~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~iEqPv~~----~d~~~~~e~la~Lr~~~~~~~~~vPI~aD 303 (408)
T TIGR01502 228 APIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRIEGPMDV----GSRQAQIEAMADLRAELDGRGVDAEIVAD 303 (408)
T ss_pred CCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEEecCCCC----CcchhhHHHHHHHHHHhhcCCCCceEEec
Confidence 3456666653 688889999999998742211 122111000 0001248889999887 58999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmi 109 (230)
=.++|++|+.++++...||.|.+
T Consensus 304 Es~~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 304 EWCNTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEe
Confidence 89999999999998778888876
No 479
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=91.73 E-value=0.11 Score=46.75 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------------CC--CCCcCCCCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------------RT--RDEKDGKKFR 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------------rt--~~~~~~~~~~ 66 (230)
++|..+.|+..=++..+.+|+.-|+-. +..+..+.++.....|+..|+-.. |. ....+...|+
T Consensus 256 q~p~v~~EvC~Wi~A~~~Ip~~~kmTP--Nitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG 333 (471)
T KOG1799|consen 256 QCPIVDCEVCGWINAKATIPMVSKMTP--NITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGG 333 (471)
T ss_pred cChhhhHHHhhhhhhccccccccccCC--CcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCC
Confidence 478899999999988889999999874 344455667777666666654311 10 0111112222
Q ss_pred ccHHHH--------HHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAI--------KAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i--------~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..+..+ -.|++.+ ..|+.+.|||.|..|+.+++- .|+.-|.+..|.+..
T Consensus 334 ~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil-~Gs~~vQVCt~V~~~ 391 (471)
T KOG1799|consen 334 YSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFIL-LGSNTVQVCTGVMMH 391 (471)
T ss_pred ccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhh-cCCcHhhhhhHHHhc
Confidence 233322 2333333 589999999999999999886 788888887776653
No 480
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.73 E-value=2.9 Score=36.62 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=61.3
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+- . +..+++++++.++++|++.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 56 ~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 56 AQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34555554443 589988774 3 67899999999999999999886532211 1111235677788888899976
Q ss_pred Ec--CCCCCHHHHHHHHH-hhCCcEE
Q 026945 85 AN--GNVRHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~n--GgI~s~~da~~~l~-~~gadgV 107 (230)
.| |---+++.+.++.+ ...+-||
T Consensus 131 Yn~~g~~l~~~~l~~L~~~~pnivgi 156 (289)
T cd00951 131 YNRANAVLTADSLARLAERCPNLVGF 156 (289)
T ss_pred EeCCCCCCCHHHHHHHHhcCCCEEEE
Confidence 33 42346777777665 2344444
No 481
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=91.70 E-value=1.9 Score=38.84 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcC--CCEEEE--ecCCCC-CcCCCCCcccHHHHHHHHhhCC-------ccEE--EcCCCC--CHHHHHHH
Q 026945 35 TIKYAKMLEDAG--CSLLAV--HGRTRD-EKDGKKFRADWNAIKAVKNALR-------IPVL--ANGNVR--HMEDVQKC 98 (230)
Q Consensus 35 ~~~~a~~l~~~G--~~~i~v--h~rt~~-~~~~~~~~~~~~~i~~i~~~~~-------ipvi--~nGgI~--s~~da~~~ 98 (230)
..++++.++.++ +|+|.+ ++.... ......+..-.+.++.+++.++ +||+ ..-++. +..++.+.
T Consensus 153 ~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~ 232 (335)
T TIGR01036 153 KEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADS 232 (335)
T ss_pred HHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHH
Confidence 445555555555 999988 333221 1111111222455666666655 8987 556665 36666676
Q ss_pred HHhhCCcEEEEehhh
Q 026945 99 LEETGCEGVLSAESL 113 (230)
Q Consensus 99 l~~~gadgVmigR~~ 113 (230)
+.+.|+|||.+.--+
T Consensus 233 ~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 233 LVELGIDGVIATNTT 247 (335)
T ss_pred HHHhCCcEEEEECCC
Confidence 667999999775444
No 482
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.70 E-value=3.4 Score=36.36 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhc---CCceEEEEECCCCChHHHHHHHHHHHHc---CCCEEEEecCCCCCcC----CCCCcccHHHHHHH
Q 026945 6 LVKSLVEKLALN---LNVPVSCKIRVFPNLQDTIKYAKMLEDA---GCSLLAVHGRTRDEKD----GKKFRADWNAIKAV 75 (230)
Q Consensus 6 ~~~eiv~~v~~~---~~~pvsvKiR~g~~~~~~~~~a~~l~~~---G~~~i~vh~rt~~~~~----~~~~~~~~~~i~~i 75 (230)
...+.++..++. .+.||.+-+-- . .++..+.++.+++. |+|+|.+----..... +..+..-.+.++.+
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g-~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTG-S-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCC-C-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 334444444433 46888877753 3 68888999988886 6999988432211100 01111223456667
Q ss_pred HhhCCccEE--EcCCC--CCHHHHHHHHHhh--CCcEEEEe
Q 026945 76 KNALRIPVL--ANGNV--RHMEDVQKCLEET--GCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi--~nGgI--~s~~da~~~l~~~--gadgVmig 110 (230)
++.+++||+ ..-+. ....++.+.+... |+|+|.+.
T Consensus 153 ~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 153 KAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE
Confidence 777789987 33333 2333444445456 89999864
No 483
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.68 E-value=1.8 Score=37.93 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=58.2
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|++.+.+..-.... .+...-+++.+.|.+.+ ++||+
T Consensus 57 ~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 57 KQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred HHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEE
Confidence 44555554433 4788776643 346789999999999999999886633211 11122357778888888 89987
Q ss_pred -E-----cCCCCCHHHHHHHHH
Q 026945 85 -A-----NGNVRHMEDVQKCLE 100 (230)
Q Consensus 85 -~-----nGgI~s~~da~~~l~ 100 (230)
. .|---+++.+.++.+
T Consensus 133 iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 133 IYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred EEeCccccCCCCCHHHHHHHhc
Confidence 2 344457777777664
No 484
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.62 E-value=1.1 Score=39.01 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC--HHHHHHHHH---hhCCcEEEE
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH--MEDVQKCLE---ETGCEGVLS 109 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s--~~da~~~l~---~~gadgVmi 109 (230)
+...++...+.|+|.|-+ .|++ +.+.++++.+.+++||+..||=++ .+++.++.. +.|+.|+.+
T Consensus 168 v~~aaRlaaelGADIiK~---------~ytg--~~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~ 236 (265)
T COG1830 168 VGYAARLAAELGADIIKT---------KYTG--DPESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAV 236 (265)
T ss_pred HHHHHHHHHHhcCCeEee---------cCCC--ChHHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhh
Confidence 334455667888888863 1322 348889999999999999998765 445544332 269999999
Q ss_pred ehhhhhC
Q 026945 110 AESLLEN 116 (230)
Q Consensus 110 gR~~l~n 116 (230)
||-+...
T Consensus 237 GRNifQ~ 243 (265)
T COG1830 237 GRNIFQH 243 (265)
T ss_pred hhhhhcc
Confidence 9965543
No 485
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.61 E-value=2.6 Score=36.95 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.+++.|+|.+.+..-.... .+...-+++.+.|.+.+++||+
T Consensus 60 ~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 60 KQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQELAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred HHHHHHHHHHhCCCCCEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEE
Confidence 44555555444 4788776632 356889999999999999999998743211 1112235677888888889976
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+..++-||
T Consensus 136 Yn~P~~tg~~l~~~~l~~L~~~pnvvgi 163 (293)
T PRK04147 136 YNIPALTGVNLSLDQFNELFTLPKVIGV 163 (293)
T ss_pred EeCchhhccCCCHHHHHHHhcCCCEEEE
Confidence 33 444467777766643344444
No 486
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=91.52 E-value=2.3 Score=39.33 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
-.+-...+.++|++.|.+..- |-+. ....+.|+.||+..+-.=+..|+|-|.+.++.++. .|+||+=+|-
T Consensus 252 dK~rl~ll~~aGvdvviLDSS---qGnS---~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~-aGaDgLrVGM 321 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVILDSS---QGNS---IYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIA-AGADGLRVGM 321 (503)
T ss_pred hhHHHHHhhhcCCcEEEEecC---CCcc---hhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHH-ccCceeEecc
Confidence 345567788999999998652 2111 34678999999987644444499999999999997 8999965553
No 487
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.51 E-value=1.5 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE------EcCCCCCHHHHH------HHHHh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQ------KCLEE 101 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi------~nGgI~s~~da~------~~l~~ 101 (230)
+..+=+...++.|++.|.+-..-.. .|. .+.+..++.+++.+++||. +.+=+.|.+++. +.+++
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~--GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKE--GGL--TPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCC--CCc--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred hCCcEEEEe
Q 026945 102 TGCEGVLSA 110 (230)
Q Consensus 102 ~gadgVmig 110 (230)
.|+|||.+|
T Consensus 85 ~GadGvV~G 93 (248)
T PRK11572 85 LGFPGLVTG 93 (248)
T ss_pred cCCCEEEEe
No 488
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.41 E-value=3.8 Score=33.67 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=52.5
Q ss_pred HHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.++++.+++.. +.++.+-+.+. +... ..++.+.++|+++|++|.-+.. ....+.+..+++ .+++++..
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i~vh~~~~~-------~~~~~~i~~~~~-~g~~~~~~ 108 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIVTVLGVADD-------ATIKGAVKAAKK-HGKEVQVD 108 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEEEEeccCCH-------HHHHHHHHHHHH-cCCEEEEE
Confidence 35566666542 33333322221 2121 1478889999999999975321 111244555544 68888754
Q ss_pred -CCCCC-HHHHHHHHHhhCCcEEEEe
Q 026945 87 -GNVRH-MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -GgI~s-~~da~~~l~~~gadgVmig 110 (230)
-+..+ .+++..+.+ .|+|.|.+.
T Consensus 109 ~~~~~t~~~~~~~~~~-~g~d~v~~~ 133 (206)
T TIGR03128 109 LINVKDKVKRAKELKE-LGADYIGVH 133 (206)
T ss_pred ecCCCChHHHHHHHHH-cCCCEEEEc
Confidence 24444 477777765 699988773
No 489
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=91.28 E-value=1.4 Score=40.01 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHcCC----CEEEEecCCCCCcCC-CCCcccHHHHHHHHhhC---------CccEEEcCCCCCH-HHHHHHHHhhCC
Q 026945 40 KMLEDAGC----SLLAVHGRTRDEKDG-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHM-EDVQKCLEETGC 104 (230)
Q Consensus 40 ~~l~~~G~----~~i~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~---------~ipvi~nGgI~s~-~da~~~l~~~ga 104 (230)
+-+++.|+ |.|.|.-.|.-..+. ..+..|++.+++|++.+ ++|++.-|+=..+ +++.++.+ .|+
T Consensus 195 ~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~-~GI 273 (350)
T PRK09197 195 YAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS-YGV 273 (350)
T ss_pred HHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH-CCC
Confidence 33445566 999887776654432 13457999999999998 7999999986655 66777776 788
Q ss_pred cEEEEehhh
Q 026945 105 EGVLSAESL 113 (230)
Q Consensus 105 dgVmigR~~ 113 (230)
.-|=|+..+
T Consensus 274 ~KINi~T~l 282 (350)
T PRK09197 274 VKMNIDTDT 282 (350)
T ss_pred eeEEeCcHH
Confidence 888776644
No 490
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.28 E-value=3.3 Score=37.27 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhcCCceEEE-EECCC---CChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNLNVPVSC-KIRVF---PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsv-KiR~g---~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.+.+...+++|+.....|++| -+-.+ .+.+++++.+.++ .++|++.|-+-|.+. ...+.|+.+. .
T Consensus 80 ld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~---------~~~~~I~~l~-~ 149 (332)
T PLN02424 80 LDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSP---------SRVTAAKAIV-E 149 (332)
T ss_pred HHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcH---------HHHHHHHHHH-H
Confidence 355667778888888888887 66655 3567888888877 679999999876431 1236777777 5
Q ss_pred CCccEE-----------EcCCC----CCHHHHHH------HHHhhCCcEEEE
Q 026945 79 LRIPVL-----------ANGNV----RHMEDVQK------CLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi-----------~nGgI----~s~~da~~------~l~~~gadgVmi 109 (230)
.+|||+ .-||. ++.+.+.+ .+++.||+++.+
T Consensus 150 ~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 150 AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 689999 33552 23443332 345689998876
No 491
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=91.25 E-value=1.8 Score=36.69 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+|......+++..+..|++++.| .+|-+.++.+++..++||+.++ | .++.+..+.+ .|||.|-|
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDI-------------Aadp~LV~~~~~~s~lPICVSa-V-ep~~f~~aV~-AGAdliEI 87 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDI-------------AADPELVKLAKSLSNLPICVSA-V-EPELFVAAVK-AGADLIEI 87 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEe-------------cCCHHHHHHHHHhCCCCeEeec-C-CHHHHHHHHH-hCCCEEEe
Confidence 45667888999999999999986 3466899999999999999865 3 5888888886 89999999
Q ss_pred eh
Q 026945 110 AE 111 (230)
Q Consensus 110 gR 111 (230)
|-
T Consensus 88 GN 89 (242)
T PF04481_consen 88 GN 89 (242)
T ss_pred cc
Confidence 74
No 492
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=91.23 E-value=0.93 Score=40.89 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..++|+.+++.|+++|.|-.-... +.| +++.+.++++. +++||..-==|-++-.+.+... .|||+|.+==
T Consensus 139 ~dp~~iA~~Ye~~GA~aISVLTd~~~----F~G--s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~-~GADAVLLIa 211 (338)
T PLN02460 139 FDPVEIAQAYEKGGAACLSVLTDEKY----FQG--SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARS-KGADAILLIA 211 (338)
T ss_pred CCHHHHHHHHHhCCCcEEEEecCcCc----CCC--CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHH-cCCCcHHHHH
Confidence 36889999999999999998652211 222 57899999998 9999999877899999998886 8999997655
Q ss_pred hhhhCC
Q 026945 112 SLLENP 117 (230)
Q Consensus 112 ~~l~nP 117 (230)
++|.+.
T Consensus 212 aiL~~~ 217 (338)
T PLN02460 212 AVLPDL 217 (338)
T ss_pred HhCCHH
Confidence 555543
No 493
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=91.19 E-value=2.2 Score=28.74 Aligned_cols=63 Identities=16% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 11 VEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 11 v~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
|+++++.+ ++++.+-..-+|+.+++..+++.+++ +.+|. +- . ++-+++..+++++.+++||.+
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~--~~~iE-------eP--~-~~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWTLEEAIRLARALED--YEWIE-------EP--L-PPDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGG--GSEEE-------SS--S-STTSHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcCh--hheee-------cC--C-CCCCHHHHHHHHHhCCCCEEe
Confidence 56676664 57888888888999999999999988 34443 21 1 234789999999999999976
No 494
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.18 E-value=0.8 Score=41.47 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccHHHHHHHHhhC-CccEEEcCCCCCHHHHH
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQ 96 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~ 96 (230)
..+..+-+++.|+|.|.|.-.|.-..+.. .+ ..||+.+++|++.+ ++|++.-|+=..++|..
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHH
Confidence 44555556778999997654443322111 12 27999999999999 79999999876654443
No 495
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=91.13 E-value=0.14 Score=42.48 Aligned_cols=92 Identities=20% Similarity=0.338 Sum_probs=59.4
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHH
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQ 96 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~ 96 (230)
++|+.-.+++..+.. ....+.... ++++-+.++.. +.....||+.+..+.+. .+.|++..||+ +++.+.
T Consensus 92 ~~~vi~~~~v~~~~~----~~~~~~~~~~~d~~LlD~~~G----gtG~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~ 162 (197)
T PF00697_consen 92 GLPVIKAIHVDKDID----LLDYLERYESVDYFLLDSGSG----GTGKTFDWSLLKKIVESYSPKPVILAGGL-NPENVR 162 (197)
T ss_dssp TSEEEEEEEESSCHS----CCHHCHCSTT-SEEEEESSST----SSSS---GGGGCCCHHT-GTSTEEEESS---TTTHH
T ss_pred CceEEEEEEeCCccc----hHHHHHhcccccEEeEccCCC----cCCcccCHHHhhhhhhhcccCcEEEEcCC-ChHHHH
Confidence 578877777765433 222222222 38888884322 22225799999988774 48999999999 688999
Q ss_pred HHHHhhCCcEEEEehhhhhCCcc
Q 026945 97 KCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 97 ~~l~~~gadgVmigR~~l~nP~l 119 (230)
++++..++.||=+..|.-.+|-.
T Consensus 163 ~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 163 EAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp HHHHHC--SEEEESGGGEEETTE
T ss_pred HHHHhcCceEEEeCCccccCCCC
Confidence 99988899999999988777765
No 496
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.11 E-value=2.4 Score=37.37 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++..++.|+|.+.+..-.... .+...-.++.+.|.+++ ++||+
T Consensus 56 ~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 56 KQAIENAIDQIAGRIPFAPGTGA-LNHDETLELTKFAEEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred HHHHHHHHHHhCCCCcEEEECCc-chHHHHHHHHHHHHHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEE
Confidence 34455444433 4788766543 356789999999999999999998743221 11122356778888888 79976
Q ss_pred -E-----cCCCCCHHHHHHHHH-hhCCcEEEEe
Q 026945 85 -A-----NGNVRHMEDVQKCLE-ETGCEGVLSA 110 (230)
Q Consensus 85 -~-----nGgI~s~~da~~~l~-~~gadgVmig 110 (230)
. .|---+++.+.++.+ ...+-||=-+
T Consensus 132 iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s 164 (294)
T TIGR02313 132 IYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES 164 (294)
T ss_pred EEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 3 344456777777664 2445554443
No 497
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.04 E-value=1.2 Score=38.15 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL---NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
++...+=|++++++. ++=|..++-.. ...+++++=++.+.++|+|.|.+++.. +-+.++++.
T Consensus 119 ~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------~~~~i~~~~ 187 (238)
T PF13714_consen 119 PEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------SEEEIERIV 187 (238)
T ss_dssp HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHH
Confidence 344444455554432 44444444321 134678888888999999999998852 235688888
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.++.|+..+.+ ...-++.++- +.|+..|..|-.++
T Consensus 188 ~~~~~Pl~v~~~-~~~~~~~eL~-~lGv~~v~~~~~~~ 223 (238)
T PF13714_consen 188 KAVDGPLNVNPG-PGTLSAEELA-ELGVKRVSYGNSLL 223 (238)
T ss_dssp HHHSSEEEEETT-SSSS-HHHHH-HTTESEEEETSHHH
T ss_pred HhcCCCEEEEcC-CCCCCHHHHH-HCCCcEEEEcHHHH
Confidence 888999877653 2113444433 58999998875443
No 498
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.96 E-value=2.8 Score=36.91 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC---C-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF---P-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g---~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+++...+-|++++++. +.++.+--|.. . ..+++++=++.+.++|+|.|..++.+ +.+.++++.+
T Consensus 131 ~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------~~e~i~~f~~ 199 (289)
T COG2513 131 SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------DLEEIRAFAE 199 (289)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------CHHHHHHHHH
Confidence 3455566666666654 55666655652 1 25788889999999999999987753 3588999999
Q ss_pred hCCccEEEc----CC--CCCHHHHHHHHHhhCCcEEEEeh
Q 026945 78 ALRIPVLAN----GN--VRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 78 ~~~ipvi~n----Gg--I~s~~da~~~l~~~gadgVmigR 111 (230)
.+++|+.+| |. ..|. +-|++.|+..|..|-
T Consensus 200 av~~pl~~N~t~~g~tp~~~~----~~L~~~Gv~~V~~~~ 235 (289)
T COG2513 200 AVPVPLPANITEFGKTPLLTV----AELAELGVKRVSYGL 235 (289)
T ss_pred hcCCCeeeEeeccCCCCCcCH----HHHHhcCceEEEECc
Confidence 998777666 33 3444 334568999998873
No 499
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.91 E-value=2.8 Score=37.75 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE-ecCCC---CCcCCCCCcccHHHHHHHHhhCC-ccE--EEcCCCCCHHHHHHHHHhhC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAV-HGRTR---DEKDGKKFRADWNAIKAVKNALR-IPV--LANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~v-h~rt~---~~~~~~~~~~~~~~i~~i~~~~~-ipv--i~nGgI~s~~da~~~l~~~g 103 (230)
+.++..++++.|.++|++.|.| |+... +-.+++....+|+.++.+++..+ ..+ +..-++.+.+++..+.+ +|
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~-~g 101 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD-AG 101 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH-cC
Confidence 4578899999999999999999 43321 11123333457999999976543 333 34445667899988886 89
Q ss_pred CcEEEEeh
Q 026945 104 CEGVLSAE 111 (230)
Q Consensus 104 adgVmigR 111 (230)
+|.|-++-
T Consensus 102 vd~iri~~ 109 (337)
T PRK08195 102 VRVVRVAT 109 (337)
T ss_pred CCEEEEEE
Confidence 99988763
No 500
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=90.77 E-value=3.2 Score=41.07 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|+++|.|..-... +. -+++.+..+++.+++||+.-==|-++-++.+... .|||+|.+==+
T Consensus 70 ~d~~~~a~~y~~~GA~aiSVlTe~~~----F~--Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~-~GADavLLI~~ 142 (695)
T PRK13802 70 PDPAALAREYEQGGASAISVLTEGRR----FL--GSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARA-HGADLVLLIVA 142 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEEecCcCc----CC--CCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHH-cCCCEeehhHh
Confidence 36889999999999999999753221 22 2578999999999999998777899999998886 89999976666
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+|.+
T Consensus 143 ~L~~ 146 (695)
T PRK13802 143 ALDD 146 (695)
T ss_pred hcCH
Confidence 6653
Done!