RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026945
(230 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 65.4 bits (158), Expect = 3e-13
Identities = 41/209 (19%), Positives = 87/209 (41%), Gaps = 13/209 (6%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+ +L + +V +L +++ S K R+ + + ++L + G + +H RT
Sbjct: 104 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--V 161
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
RA+W A+ ++ + V +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 162 QSFTGRAEWKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 219
Query: 121 AGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP 180
+ S + S+ + +L+L K + + + K L + +
Sbjct: 220 KQIKDFLR---SGKYSEPSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLK 275
Query: 181 GVREDLNAQNRLT-----FEFLYNLVDRL 204
G R ++ E YN + +
Sbjct: 276 GARRFREKVMKIEEVQILKEMFYNFIKEV 304
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 47.6 bits (112), Expect = 2e-07
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 35 TIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 92
T++ AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 93 EDVQKCLEETGCEGVLSAESLLENPALFA 121
+ ++ + + G + ++ P
Sbjct: 188 DMYKRVM-DLGVHCSVVGGAIT-RPKEIT 214
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 44.6 bits (105), Expect = 3e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 94 DVQKCLEETGCEGVLSAESLLEN 116
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 43.0 bits (100), Expect = 1e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 75
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 41.3 bits (96), Expect = 4e-05
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 95
+ + E G + ++ +D + D I+ VK+A++IPV+A+ E
Sbjct: 223 WELTRACEALGAGEILLNCIDKDGSNS---GYDLELIEHVKDAVKIPVIASSGAGVPEHF 279
Query: 96 QKCLEETGCEGVLSAESLLEN 116
++ +T + L A
Sbjct: 280 EEAFLKTRADACLGAGMFHRG 300
Score = 26.7 bits (58), Expect = 2.8
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76
+V + NL ++ A+ G + T K +K
Sbjct: 32 QYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAA 91
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
+ +P+ G ++ + DV + T + A + A T
Sbjct: 92 KTVFVPLTVGGGIKDIVDV----DGTKIPALEVASLYFRSGADKVSIGTD 137
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 41.0 bits (95), Expect = 5e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 94
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 95 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 37.8 bits (87), Expect = 5e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 94 DVQKCLEETGCEGVLSAESLLEN 116
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 38.1 bits (87), Expect = 6e-04
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 31 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 87
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 37.2 bits (85), Expect = 0.001
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMED 94
I +AK +++ G L+ D F + + ++ + A G +
Sbjct: 231 IGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSM 290
Query: 95 VQKCLEETGCEGVLSAESLLENPAL 119
++ L+ + + LL +P
Sbjct: 291 AEEILQNGRADLIFIGRELLRDPFF 315
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 196 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 227
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 36.4 bits (83), Expect = 0.001
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 97
L GC+ V +D G + +K V A PV+A+G V ++D++
Sbjct: 150 TLDRLNKEGCARYVVTDIAKD---GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 98 C--LEETGCEGVLSAESLLEN 116
L G EG + ++L
Sbjct: 207 IAGLVPAGVEGAIVGKALYAK 227
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 25 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPV 83
V P D + A+ LE+ G + G + + + ++PV
Sbjct: 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPI----GSGQGILNPLNLSFIIEQAKVPV 180
Query: 84 LANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 126
+ + + +D + E G +GVL +A S ++P A + A
Sbjct: 181 IVDAGIGSPKDAAYAM-ELGADGVLLNTAVSGADDPVKMARAMKLA 225
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 35.5 bits (81), Expect = 0.004
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 24 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83
L I+ A+ +AG +L T + + +A+++P+
Sbjct: 157 TDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPI 205
Query: 84 LANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFAGFRTAEWIV--GSEEISKDG 139
LAN + L L S A + G+++ D
Sbjct: 206 LANITEFGATPLFTTDELRSAHVAMALYPLSAFR-AMNRAAEHVYNVLRQEGTQKSVIDT 264
Query: 140 NLDQADL--LVEYLKLCEKY 157
+ +L + Y + EK
Sbjct: 265 MQTRNELYESINYYQYEEKL 284
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 33.8 bits (76), Expect = 0.012
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 21/139 (15%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+ + +LV+ VP+ K+ PN+ D + AK +E AG L + +
Sbjct: 146 GTDPEVAAALVKACKAVSKVPLYVKL--SPNVTDIVPIAKAVEAAGADGLTMINTLMGVR 203
Query: 61 DG------------------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 102
I V + IP++ G V + +DV +
Sbjct: 204 FDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-A 262
Query: 103 GCEGVLSAESLLENPALFA 121
G V + +P +
Sbjct: 263 GASAVAVGTANFADPFVCP 281
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 32.9 bits (74), Expect = 0.018
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 196 FLYNLVDRLRELGVRIPLYKKDADDAEILADDLA 229
F YNLVD+LR G ++ +Y+ I+
Sbjct: 12 FTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQH 45
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 32.6 bits (73), Expect = 0.024
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 196 FLYNLVDRLRELGVRIPLYKKDADDAEI 223
+++ + LR LGV + EI
Sbjct: 12 YVHRIWRTLRYLGVETKIIPNTTPLEEI 39
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 31.4 bits (70), Expect = 0.060
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 196 FLYNLVDRLRELGVRIPLYKKDADDAE 222
F+YN+ + ELG + + D +
Sbjct: 13 FVYNIAQIVGELGSYPIVIRNDEISIK 39
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.0 bits (65), Expect = 0.094
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 125 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 157
T +W++ + E ++ +L ++ L YL ++
Sbjct: 1 TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQ 33
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 30.1 bits (67), Expect = 0.16
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 59 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
++DG K D I+ V+ +P++A+G ME + G + L+A
Sbjct: 174 DRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLE-AFLAGADAALAASVFHFR 230
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 29.9 bits (66), Expect = 0.23
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 24/130 (18%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA--KMLEDAGCSLLAVHGRTRD 58
+ LV+++ + + +P K+ +I A + D + V G
Sbjct: 153 GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGL 212
Query: 59 EKDGKKFRA--------------------DWNAIKAVKNAL-RIPVLANGNVRHMEDVQK 97
+ DG + A A+ + AL P+LA G + E +
Sbjct: 213 KADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQ 272
Query: 98 CLEETGCEGV 107
L +G +
Sbjct: 273 FL-HSGASVL 281
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 29.6 bits (65), Expect = 0.24
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK-----CLEETGCEGVLSAESLLE 115
DG D++ K + + VLA G + ++ +GV+ + LE
Sbjct: 169 DGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228
Query: 116 N 116
Sbjct: 229 G 229
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.6 bits (66), Expect = 0.28
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 25 KIRVFPNLQDTIKY-AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74
F A L AG S++ ++ +T + + + + I A
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILA 88
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 28.3 bits (62), Expect = 0.66
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 98
A E G L + ++ + +++IPV+A G + ++ ++
Sbjct: 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREV 170
Query: 99 LEETGCEGVLSAESLLENP 117
L +TG +G+ +++
Sbjct: 171 L-KTGVDGIAVISAVMGAE 188
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 28.7 bits (63), Expect = 0.66
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ V + + PV+ GN +V + + + + NP L
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDL 356
>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
Length = 332
Score = 27.3 bits (59), Expect = 1.7
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 158 PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT 193
+ +L + + + PGV ++
Sbjct: 254 GANCYDEIKKIRELFPDCYILAPGVGAQKGDLRKML 289
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 141 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN--RLTFEFLY 198
+ + V + ++ RE +A+ T E
Sbjct: 130 TGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFC 189
Query: 199 NLVDRLRELG 208
+V+R +E+G
Sbjct: 190 GIVNRWKEMG 199
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 25.4 bits (56), Expect = 4.6
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLE 100
A K + V+A G V E+ ++ L+
Sbjct: 128 APKVARKIPGRTVIAAGLVETEEEAREILK 157
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 26.0 bits (56), Expect = 4.7
Identities = 15/93 (16%), Positives = 29/93 (31%)
Query: 24 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83
+I+ P L+D K+L G + D + F A ++ +K ++ ++
Sbjct: 39 VEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNFSAPYDLVKTMRASIWALG 98
Query: 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
+ G V LE
Sbjct: 99 PLVARFGQGQVSLPGGCAIGARPVDLHIFGLEK 131
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 25.5 bits (56), Expect = 4.8
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL------LAVHGR--- 55
++ S++ V V +++ + + I +AK L +AG + L +H +
Sbjct: 67 RIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFL 126
Query: 56 -TRDEKDGKKFRADW 69
+R E A
Sbjct: 127 ISRKENGEVVRYAHI 141
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.5 bits (55), Expect = 6.0
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 29 FPNLQDTIKYAKMLEDAGCSLL 50
P+L T + ++L+ G ++
Sbjct: 27 DPDLATTAEALRLLDGCGADVI 48
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 25.6 bits (55), Expect = 6.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 29 FPNLQDTIKYAKMLEDAGCSLLAV 52
P ++ ++K L DAG L +
Sbjct: 27 DPGIEQSLKIIDTLIDAGADALEL 50
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 26 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGR----TRDEKDGKKFRADWNAIKAVKNALR- 80
IR L D A+ L+ A + V G D I+AV +
Sbjct: 22 IRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISH 81
Query: 81 --IPVLANGNVRHMEDVQKCLE 100
I L + + D++ +
Sbjct: 82 AQIATLLLPGIGSVHDLKNAYQ 103
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 25.1 bits (54), Expect = 7.3
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117
+ +A + ++++ L + G L SL+ NP
Sbjct: 204 VVKVAESGISERNEIEE-LRKLGVNAFLIGSSLMRNP 239
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 25.3 bits (55), Expect = 9.3
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 150 YLKLCE--KYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRL----TFEFLYNLVDR 203
+K+ + K ++ V +++ PGV L + + E L L+
Sbjct: 507 EIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGV--MLISPPPHHDIYSIEDLAQLIYD 564
Query: 204 LRELGVRIPLYKK 216
L+++ + K
Sbjct: 565 LKQINPDAKVTVK 577
>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 426
Score = 25.2 bits (54), Expect = 9.4
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 191 RLTFEFLYNLVDRLRELGVRIPLYKKDADDAEILADD 227
R E ++L ++L+++G+ + + I+A+
Sbjct: 317 RFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEG 353
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 24.5 bits (53), Expect = 9.4
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 17/69 (24%)
Query: 144 ADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 203
+++ E + L ++ E E+ Y + ++
Sbjct: 31 SNIFYEKISL---MQAGLYAKSANYRIKFREIA-------LKE-------DEWFYLISEQ 73
Query: 204 LRELGVRIP 212
L + +P
Sbjct: 74 LLDENELVP 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,389
Number of extensions: 41673
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 41
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)