BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026946
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TT9|A Chain A, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|B Chain B, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|C Chain C, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|D Chain D, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
Length = 541
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A I+ H G HPR G +D F P+ S DE AKA + VPV+L
Sbjct: 66 ARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA P+ + L IR G Y + A W P+ GP P+ G +
Sbjct: 126 YGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>pdb|2PFD|A Chain A, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|B Chain B, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|C Chain C, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|D Chain D, Anisotropically Refined Structure Of Ftcd
Length = 541
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A I+ H G HPR G +D F P+ S DE AKA + VPV+L
Sbjct: 66 ARTASQLIDXRKHKGEHPRXGALDVCPFIPVRGVSXDECVLCAKAFGQRLAEELNVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA P+ + L IR G Y + A W P+ GP P+ G +
Sbjct: 126 YGEAAQXPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase.
pdb|1QD1|B Chain B, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase
Length = 325
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 16/208 (7%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A AAY I++ H G HPR+G +D F P+ ++DE A+A + VPV+L
Sbjct: 65 ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 124
Query: 62 YAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIG 121
Y A T G Y + A W P+ GP P+ G + G
Sbjct: 125 YGEAARTAGRQSLPALRAGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATVAG 176
Query: 122 ARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGEDS-TEIAC 174
AR ++ +NI ++ST A RIA + +G G L VQ +G E + +++
Sbjct: 177 ARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVST 235
Query: 175 MLLEPNQVGADRVQNRVEKLAAEEGLDV 202
LL+ G V + A E L V
Sbjct: 236 NLLDFEVTGLHTVFEETCREAQELSLPV 263
>pdb|1L9M|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9M|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1NUD|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUD|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUF|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme
pdb|1NUG|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
pdb|1NUG|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
Length = 692
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 48 AADIGSRFQVPVFLYAAAHPTGKPLDTIRR----ELGYYRPNSMGNQWAGWTMPEILPER 103
A D V V+ +P K D++ G++ + +G + GW + + P+
Sbjct: 299 AHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQE 358
Query: 104 PNEGPIQVSPARGIAMIGARPW-VAL-YNIPIMSTDVAATR 142
++G Q PA ++IG R V L +++P + +V A R
Sbjct: 359 RSQGVFQCGPA---SVIGVREGDVQLNFDMPFIFAEVNADR 396
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 28 VFHPLARASLDEAAWLAKAVAADIGSRFQV-PVFLYAAAHPTGKPLDTIRRELGYYRPNS 86
+ HP +R S+ + ++G R + P +L TG+ + RR L R
Sbjct: 378 ITHPTSRGSV-------RISGPELGDRLIIDPAYLQ-----TGRDRERFRRALEASRTIG 425
Query: 87 MGNQWAGWTMPEILPERPN 105
++ AGW E+LP PN
Sbjct: 426 HRDELAGWRERELLPGTPN 444
>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
Length = 481
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 152 GGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEK 193
GGG+ LG+ E + +I ++L+P+ GA+ +Q +EK
Sbjct: 412 GGGVLAHTILGVAWNETTGQIKFLILDPHYTGAEDLQVMLEK 453
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 135 STDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGAD-RVQNRVEK 193
S+ V T + M++ G P +Q + + + C LL NQ D ++ +E+
Sbjct: 136 SSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEE 195
Query: 194 LAAEEGLDVEKGYFTDFSPE 213
L E + Y D +PE
Sbjct: 196 LRNEHSARFKLWYTVDRAPE 215
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 20 RLGVVDDIVFHPLARASLDEAAWL-AKAVAADIGSRFQVPVF-----LYAAAHPTGKPLD 73
R V D +F L ++ E +L A+A + ++ QV + Y A TGK D
Sbjct: 75 RREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGND 134
Query: 74 TIRRELGYYRPNSMGNQWAGWTMPEIL 100
+R EL Y N + W PE L
Sbjct: 135 QVRFELTYAALNPNLKVISPWKDPEFL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,108,050
Number of Sequences: 62578
Number of extensions: 300345
Number of successful extensions: 679
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 16
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)