BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026946
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88618|FTCD_RAT Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd
PE=1 SV=4
Length = 541
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A I++ H G HPR+G +D F P+ S+DE AKA + VPV+L
Sbjct: 66 ARTASQLIDMRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA P+ + L IR G Y + A W P+ GP P+ G +
Sbjct: 126 YGEAAQMPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|Q91XD4|FTCD_MOUSE Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1
SV=1
Length = 541
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A I++ H G HPR+G +D F P+ S++E AKA + VPV+L
Sbjct: 66 ARTASQLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAFGQRLAEELNVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA P+ + L IR G Y + A W P+ GP P+ G +
Sbjct: 126 YGEAAQTPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 176 TGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|P53603|FTCD_PIG Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1
SV=1
Length = 541
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 20/210 (9%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A AAY I++ H G HPR+G +D F P+ ++DE A+A + VPV+L
Sbjct: 66 ARAAYQLIDMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYL 125
Query: 62 YAAAHPTG--KPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y A T + L +R G Y + A W P+ GP P+ G +
Sbjct: 126 YGEAARTAGRQSLPALR--AGEYEALPEKLKQAEWA--------PDFGPSAFVPSWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHGEDS-TEI 172
GAR ++ +NI ++ST A RIA + +G G L VQ +G E + ++
Sbjct: 176 AGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQV 234
Query: 173 ACMLLEPNQVGADRVQNRVEKLAAEEGLDV 202
+ LL+ G V + A E L V
Sbjct: 235 STNLLDFEVTGLHTVFEETCREAQELSLPV 264
>sp|O95954|FTCD_HUMAN Formimidoyltransferase-cyclodeaminase OS=Homo sapiens GN=FTCD PE=1
SV=2
Length = 541
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A I++ H G HPR+G +D F P+ S+DE A+A + VPV+L
Sbjct: 66 ARVASRLIDMSRHQGEHPRMGALDVCPFIPVRGVSVDECVLCAQAFGQRLAEELDVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA + + L IR G Y Q A W P+ GP P+ G
Sbjct: 126 YGEAARMDSRRTLPAIR--AGEYEALPKKLQQADWA--------PDFGPSSFVPSWGATA 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 162
GAR ++ +NI ++ T A RIA + +G G L VQ +G
Sbjct: 176 TGARKFLIAFNINLLGTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|Q54JL3|FTCD_DICDI Formimidoyltransferase-cyclodeaminase OS=Dictyostelium discoideum
GN=ftcd PE=3 SV=1
Length = 537
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 5 AYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFLYAA 64
A+ I++ H G HPR+G +D F P+ +++E +K I VP+FLY
Sbjct: 69 AFKLIDMTKHHGEHPRMGALDVCPFVPVRNVTMEECVNCSKEFGKRISEEIGVPIFLYEE 128
Query: 65 AHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARP 124
A + R++L R G + +P+ GP + P+ G ++ GAR
Sbjct: 129 AST-----QSYRKQLKQIR---QGEYEGLEEKLKEEKWKPDFGPAKFIPSYGASVTGARS 180
Query: 125 WVALYNIPIMSTDVAATRRIARMVSARGGG 154
++ YN+ I+ T A RIA V G G
Sbjct: 181 FLIAYNVNILGTKEQA-HRIALNVREAGRG 209
>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Gallus gallus GN=FTCD PE=2
SV=1
Length = 541
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 2 ADAAYGAINLETHSGAHPRLGVVDDIVFHPLARASLDEAAWLAKAVAADIGSRFQVPVFL 61
A A+ I++ H G HPR+G +D F P+ S++E A + VPV+L
Sbjct: 66 ARMAWELIDMSRHKGEHPRMGALDVCPFVPVMNISMEECVICAHVFGQRLSEELGVPVYL 125
Query: 62 Y--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAM 119
Y AA + + L IR G Y + W P+ GP P G +
Sbjct: 126 YGEAARQESRRTLPAIRA--GEYEALPKKLEKPEWV--------PDFGPPAFVPQWGATV 175
Query: 120 IGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG-LVHGEDSTEI 172
GAR ++ YNI ++ T A RIA + +G G L VQ +G + E+ ++
Sbjct: 176 TGARTFLIAYNINLLCTKELA-HRIALNIREQGRGADQPGSLKKVQGIGWYLEEENIAQV 234
Query: 173 ACMLLE 178
+ LL+
Sbjct: 235 STNLLD 240
>sp|Q9D7N3|RT09_MOUSE 28S ribosomal protein S9, mitochondrial OS=Mus musculus GN=Mrps9
PE=1 SV=3
Length = 390
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 21 LGVVDDIVFHPLARASLDE--AAWLAKAVAADIGSRFQVPVFLYAAAHPTGKPLDTIRRE 78
G V + F P RASL + W A AV G+RFQ+ ++ T K + R+E
Sbjct: 8 CGRVLSLWFTPAVRASLCQRPGYWTASAVGWQTGTRFQLSKLIHTTVVTTKKNVQASRQE 67
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 14/140 (10%)
Query: 65 AHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERP---NEGPIQV-SPARGIAMI 120
++P KPL+ + L G Q M +R E IQ+ P R
Sbjct: 1041 SYPVSKPLNQV---LSSLVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERS---- 1093
Query: 121 GARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLG--LVHGEDSTEIACMLLE 178
PW IP+ +++ A T R+ +++A G T+ +G V GED +LL
Sbjct: 1094 -GGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLF 1152
Query: 179 PNQVGADRVQNRVEKLAAEE 198
D QN V ++ + E
Sbjct: 1153 SFGKNGDNSQNVVTEVYSRE 1172
>sp|A8LCM4|COAX_FRASN Type III pantothenate kinase OS=Frankia sp. (strain EAN1pec)
GN=coaX PE=3 SV=1
Length = 253
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 131 IPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQN 189
+ + ST AA R I RMVS +PTV +V T + ++ P + GADR+ N
Sbjct: 55 VSVCSTVPAALREIRRMVSRTFPAMPTV----VVEPGTRTGVPILIDNPKEAGADRIMN 109
>sp|Q08188|TGM3_HUMAN Protein-glutamine gamma-glutamyltransferase E OS=Homo sapiens
GN=TGM3 PE=1 SV=4
Length = 693
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 48 AADIGSRFQVPVFLYAAAHPTGKPLDTIRR----ELGYYRPNSMGNQWAGWTMPEILPER 103
A D V V+ +P K D++ G++ + +G + GW + + P+
Sbjct: 300 AHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQE 359
Query: 104 PNEGPIQVSPARGIAMIGARPW-VAL-YNIPIMSTDVAATR 142
++G Q PA ++IG R V L +++P + +V A R
Sbjct: 360 RSQGVFQCGPA---SVIGVREGDVQLNFDMPFIFAEVNADR 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,359,856
Number of Sequences: 539616
Number of extensions: 3860097
Number of successful extensions: 9665
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9653
Number of HSP's gapped (non-prelim): 17
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)