BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026947
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 120/235 (51%), Gaps = 35/235 (14%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLVVMVL 44
AE++GT+ ++F G + V+ L P I + + L + +
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 45 VYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQF 104
+YSLG ISGAH NP+VTIA + RFP ++V PYI+ Q +G+ L + LLF
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLACVGPA 126
Query: 105 AGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLL 155
A T+ P QA + E I TF LM VI GVA D RA AGL +G TV
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG 186
Query: 156 NVMFAGPITGASMNPARSLGPAIVSSQYK-GLW----IYIVAPPLGATAGAWVYN 205
+ G ITG+S+NPAR+ GP + S LW IY++ P +GA A AW+YN
Sbjct: 187 IITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 31 PGIS-IVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP----WKQVPPYILCQVLG 85
PG + +V GL V ++ ++G+I+G+ NP+ T W+ P Y++ ++G
Sbjct: 173 PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVG 232
Query: 86 STLAAGTLRLLFQE 99
+ AA L +E
Sbjct: 233 AVAAAWLYNYLAKE 246
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
IS+ +GL + +V GHISG H NP+VT+A ++ + YI Q LG+ + AG
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 93 LRLLFQEKQDQFAGTLPAGSNIQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGL 147
L L+ G N+ A ++E IITF L+F I D R G +A L
Sbjct: 111 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-L 169
Query: 148 AVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 207
A+G +V + +FA TGASMNPARS GPA++ ++ WIY V P +GA +Y V
Sbjct: 170 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 208 RYTDKPLREITKSASFLKGAGRS 230
D L+ K A F K A ++
Sbjct: 230 FCPDVELKRRLKEA-FSKAAQQT 251
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
IS+ +GL + +V GHISG H NP+VT+A ++ + YI Q LG+ + AG
Sbjct: 90 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 149
Query: 93 LRLLFQEKQDQFAGTLPAGSNIQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGL 147
L L+ G N+ A ++E IITF L+F I D R G +A L
Sbjct: 150 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-L 208
Query: 148 AVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 207
A+G +V + +FA TGASMNPARS GPA++ ++ WIY V P +GA +Y V
Sbjct: 209 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 268
Query: 208 RYTDKPLREITKSASFLKGAGRS 230
D L+ K A F K A ++
Sbjct: 269 FCPDVELKRRLKEA-FSKAAQQT 290
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F GC S V+ + + G+++ WGL V+ + +++GHISG HFNP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F GC S V+ ++ + G+++ WGL V+ + +++GHISG HFNP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 7/203 (3%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
IS+ +GL + +V GHISG H NP+VT+A ++ + YI Q LG+ + AG
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 93 LRLLFQEKQDQFAGTLPAGSNIQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGL 147
L L+ G N+ A ++E IITF L+F I R G +A L
Sbjct: 111 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-L 169
Query: 148 AVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 207
A+G +V + +FA TGASMNPARS GPA++ ++ WIY V P +GA +Y V
Sbjct: 170 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 208 RYTDKPLREITKSASFLKGAGRS 230
D L+ K A F K A ++
Sbjct: 230 FCPDVELKRRLKEA-FSKAAQQT 251
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 36/237 (15%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLVVMV 43
+AE +GT+ ++F G S V L + P I + +G +
Sbjct: 9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAA 68
Query: 44 LVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQ 103
+Y+LG+ISG H NP+VTI + K+FP ++V PYI+ Q+LG+ + +F +
Sbjct: 69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS----FIFLQCAGI 124
Query: 104 FAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVL 154
A T+ P S QA + E + TF LM I G+A D RA AG+ +G TV
Sbjct: 125 GAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVA 184
Query: 155 LNVMFAGPITGASMNPARSLGPAIVSSQYKG--LW----IYIVAPPLGATAGAWVYN 205
+ G I+G+S+NPAR+ GP + + G LW IY++ P +GA A Y
Sbjct: 185 GIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQ 241
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
+AE++GT+ ++ + V+ K + I+ GL V ++ +LG+ISG+ NP+
Sbjct: 148 LAEVVGTFLLMIT-IMGIAVDERAPKGFA----GIIIGLTVAGIITTLGNISGSSLNPAR 202
Query: 61 TIA-HATCKRFP----WKQVPPYILCQVLGSTLAAGTLRLLFQE 99
T + F W Y++ ++G+ LAA T + L E
Sbjct: 203 TFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG HFNP+V
Sbjct: 7 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 66
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 126
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 127 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSV 185
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 186 NPARSTAVAIFQGGWALEQLWFF 208
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG HFNP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HFNP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
IS+ +GL + +V GHISG H NP+VT+A ++ + YI Q LG+ + AG
Sbjct: 42 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGI 101
Query: 93 LRLLFQEKQDQFAGTLPAGSNIQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGL 147
L L+ G N+ A ++E IITF L+F I R G +A L
Sbjct: 102 LYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-L 160
Query: 148 AVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 207
A+G +V + +FA TGASMNPARS GPA++ ++ WIY V P +GA +Y V
Sbjct: 161 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HFNP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G + L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 14/224 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPS 59
+AE GT++++F GC S V ++ + G+++ +GL V+ + Y++G ISG HFNP+
Sbjct: 34 LAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPA 93
Query: 60 VTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK---------QDQFAGTLPA 110
V++ RFP + PY++ QV G+ +AA L ++ K + + P
Sbjct: 94 VSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPG 153
Query: 111 G-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMN 169
G S + A ++E I+T + + VI G +T R A +A+G + L + + P+T S+N
Sbjct: 154 GYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPIAIGLALTLIHLISIPVTNTSVN 212
Query: 170 PARSLGPAIVSSQY--KGLWIYIVAPPLGATAGAWVYNMVRYTD 211
PARS G A+ + + LW++ +AP +G AGA ++ + D
Sbjct: 213 PARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG HFNP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-----LP 109
TI RFP K+V Y++ QV+G +AA L L+ F FA P
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
Query: 110 AG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASM 168
G S + A V+E +++ + VI G ATD A A +A+G L + + P+T S+
Sbjct: 130 GGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLISIPVTNTSV 188
Query: 169 NPARSLGPAIVSSQY--KGLWIY 189
NPARS AI + + LW +
Sbjct: 189 NPARSTAVAIFQGGWALEQLWFF 211
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 120/238 (50%), Gaps = 24/238 (10%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVYSLGHISGA 54
AE T F +F G + + PG +++ +GL + LV ++GHISGA
Sbjct: 10 FAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 61
Query: 55 HFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQFAGTLPAGS 112
H NP+VT A + + Y++ Q+LG+ A L + + + TL G
Sbjct: 62 HVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGV 121
Query: 113 NI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFAGPITGASM 168
++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F TGA M
Sbjct: 122 SVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGM 179
Query: 169 NPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 226
NPARS PAI++ + W+Y V P +GA G+ +Y+ + + L+ +++ S LKG
Sbjct: 180 NPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG 235
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 120/238 (50%), Gaps = 24/238 (10%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVYSLGHISGA 54
AE T F +F G + + PG +++ +GL + LV ++GHISGA
Sbjct: 14 FAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 65
Query: 55 HFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQFAGTLPAGS 112
H NP+VT A + + Y++ Q+LG+ A L + + + TL G
Sbjct: 66 HVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGV 125
Query: 113 NI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFAGPITGASM 168
++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F TGA M
Sbjct: 126 SVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGM 183
Query: 169 NPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 226
NPARS PAI++ + W+Y V P +GA G+ +Y+ + + L+ +++ S LKG
Sbjct: 184 NPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG 239
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 10/201 (4%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
+++ +GL + LV ++GHISGAH NP+VT A + + Y++ Q+LG+ A
Sbjct: 44 VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAV 103
Query: 93 LRLLFQE--KQDQFAGTLPAGSNI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--G 146
L + + + TL G ++ QA ++E +T L FV+ AT D R G L
Sbjct: 104 LYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVA 161
Query: 147 LAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNM 206
LAVG ++ L +F TGA MNPARS PAI++ + W+Y V P +GA G+ +Y+
Sbjct: 162 LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221
Query: 207 VRYTDKPLREITKSASFLKGA 227
+ + L+ +++ S LKG+
Sbjct: 222 LLFPR--LKSVSERLSILKGS 240
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVYSLGHISGA 54
AE T F +F G + + PG +++ +GL + LV ++GHISGA
Sbjct: 8 FAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 59
Query: 55 HFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQFAGTLPAGS 112
H NP+VT A + + Y++ Q+LG+ A L + + + TL G
Sbjct: 60 HVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGV 119
Query: 113 NI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFAGPITGASM 168
++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F TGA M
Sbjct: 120 SVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGM 177
Query: 169 NPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRY 209
NPARS PAI++ + W+Y V P +GA G+ +Y+ + +
Sbjct: 178 NPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLF 218
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
+AE LGT +IF G V IS++WGL V + +Y +SGAH NP+V
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ-----------F 104
TIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 105 AGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAI--GELAGLAVGSTVLLNV 157
AGT N +QAF +E +IT LM +I + D + G LA L +G + +
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIG 191
Query: 158 MFAGPITGASMNPARSLGPAIVS 180
GP+TG +MNPAR GP + +
Sbjct: 192 ASMGPLTGFAMNPARDFGPKVFA 214
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 33 ISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGT 92
+S+ +GL + L S+GHISGAH NP+VT+ + + YI+ Q +G+ +A
Sbjct: 54 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAI 113
Query: 93 LRLLFQEKQDQFAGT---LPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAG--- 146
L + D G P ++ Q +E I T L+ + +AT +R +L G
Sbjct: 114 LSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSGP 171
Query: 147 LAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNM 206
LA+G +V L + A TG +NPARS G ++++ ++ WI+ V P +GA +Y+
Sbjct: 172 LAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDF 231
Query: 207 V---RYTDKPLR 215
+ R +D R
Sbjct: 232 ILAPRSSDLTDR 243
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 16/229 (6%)
Query: 1 MAEILGTYFMIFAGCASVV-----VNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAH 55
+AE L T +F S + V N + +S+ +GL + L S+GHISGAH
Sbjct: 15 VAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAH 74
Query: 56 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG--TLPAGSN 113
NP+VT+ + + YI+ Q +G+ +A L + G L G N
Sbjct: 75 LNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVN 134
Query: 114 I-QAFVMEFIITFYLMFVISGVATDNRAIGELAG---LAVGSTVLLNVMFAGPITGASMN 169
Q +E I T L+ + +AT +R +L G LA+G +V L + A TG +N
Sbjct: 135 SGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGIN 192
Query: 170 PARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV---RYTDKPLR 215
PARS G A+++ + WI+ V P +G +Y+ + R +D R
Sbjct: 193 PARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDR 241
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSV 60
+AE LGT +IF G V IS+++GL V + +Y +SGAH NP+V
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAV 71
Query: 61 TIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ-----------F 104
TIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
Query: 105 AGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAI--GELAGLAVGSTVLLNV 157
AGT N +QAF +E +IT LM +I + D + G LA L +G + +
Sbjct: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIG 191
Query: 158 MFAGPITGASMNPARSLGPAIVS 180
GP+TG +MNPAR GP + +
Sbjct: 192 ASMGPLTGTAMNPARDFGPKVFA 214
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFN 57
+AE + T ++ A+V+ + + V L GI+ +G ++ VLVY ISG H N
Sbjct: 61 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 120
Query: 58 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNI 114
P+VT ++ + Y++ Q LG+ G ++ + +QF G ++ G N
Sbjct: 121 PAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 180
Query: 115 -QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGPITGASM 168
A E I TF L++ + R+ + LA L +G V + + PITG +
Sbjct: 181 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 240
Query: 169 NPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 207
NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 241 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 282
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFN 57
+AE + T ++ A+V+ + + V L GI+ +G ++ VLVY ISG H N
Sbjct: 65 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 124
Query: 58 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNI 114
P+VT ++ + Y++ Q LG+ G ++ + +QF G ++ G N
Sbjct: 125 PAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 184
Query: 115 -QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGPITGASM 168
A E I TF L++ + R+ + LA L +G V + + PITG +
Sbjct: 185 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 244
Query: 169 NPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 207
NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 245 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFN 57
+AE + T ++ A+V+ + + V L GI+ +G ++ VLVY ISG H N
Sbjct: 65 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 124
Query: 58 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNI 114
P+VT ++ + Y++ Q LG+ G ++ + +QF G ++ G N
Sbjct: 125 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 184
Query: 115 -QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGPITGASM 168
A E I TF L++ + R+ + LA L +G V + + PITG +
Sbjct: 185 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 244
Query: 169 NPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 207
NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 245 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFN 57
+AE + T ++ A+V+ + + V L GI+ +G ++ VLVY ISG H N
Sbjct: 42 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 101
Query: 58 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNI 114
P+VT ++ + Y++ Q LG+ G ++ + +QF G ++ G N
Sbjct: 102 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 161
Query: 115 -QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGPITGASM 168
A E I TF L++ + R+ + LA L +G V + + PITG +
Sbjct: 162 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 221
Query: 169 NPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 207
NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 222 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHISGAHFN 57
+AE + T ++ A+V+ + + V L GI+ +G ++ VLVY ISG H N
Sbjct: 42 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 101
Query: 58 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNI 114
P+VT ++ + Y++ Q LG+ G ++ + +QF G ++ G N
Sbjct: 102 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNK 161
Query: 115 -QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGPITGASM 168
A E I TF L++ + R+ + LA L +G V + + PITG +
Sbjct: 162 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 221
Query: 169 NPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 207
NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 222 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 2 AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 61
AE L T +F G S + + ++ I++ +GL + L +LG +SG H NP++T
Sbjct: 17 AEFLATLIFVFFGLGSALKW--PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAIT 74
Query: 62 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTL---RLLFQEKQDQFAGTLPAGSNIQAFV 118
+A + + Y+ Q++G+ AG L L + QA V
Sbjct: 75 LALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMV 134
Query: 119 MEFIITFYLMFVISGVATDNRAIGELA--GLAVGSTVLLNVMFAGPITGASMNPARSLGP 176
+E I+TF L I +TD+R + L++G +V L + TG SMNPARS GP
Sbjct: 135 VELILTFQLALCIFA-STDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193
Query: 177 AIVSSQYK-GLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 226
A+V +++ W++ V P +GA A +Y + + + +++ + +KG
Sbjct: 194 AVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS--LSLSERVAIIKG 242
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 33/234 (14%)
Query: 1 MAEILGTYFMIFAGCASVVVNLNNEKIVSLPG----ISIVWGLVVMVLVYSLGHISGAHF 56
+ E LGT+ ++F G + N L G + + WGL V + +SGAH
Sbjct: 14 IGEFLGTFVLMFLGEGATA----NFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHL 69
Query: 57 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ-----EKQDQFA---GTL 108
N +V+I ++ +F K++P Y Q+LG+ + T+ L+ K QFA
Sbjct: 70 NLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRN 129
Query: 109 PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTV-----LLNVMFAGPI 163
P+ S AF E I+T ++ ++ V D G+ L + S V + + F G
Sbjct: 130 PSISLTGAFFNELILT-GILLLVILVVVDENICGKFHILKLSSVVGLIILCIGITFGGN- 187
Query: 164 TGASMNPARSLGPAIVSSQYKG----------LWIYIVAPPLGATAGAWVYNMV 207
TG ++NP+R LG +S G W+ +VAP +G+ Y+ V
Sbjct: 188 TGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKV 241
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 112 SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAG------LAVGSTVLLNVMFAGPITG 165
S ++ F+ EF+ TF LMF+ G AT N L+G L G V ++ + ++G
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEG-ATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSG 66
Query: 166 ASMNPARSLG-PAIVSSQYKGLWIYIVAPPLGATAG 200
A +N A S+G +I K + +Y A LGA G
Sbjct: 67 AHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVG 102
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 24/225 (10%)
Query: 3 EILGTYFMIFAGCASVVVNLNNEKIVSLPG---------ISIVWGLVVMVLVYSLGHISG 53
E +GT+ +++ A V+ + N+ + G IS +G VMV V+ +SG
Sbjct: 51 EFVGTFLFLWS--AFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSG 108
Query: 54 AHFNPSVTIAHATCKRFPWKQVPPY-----ILCQVLGSTLAAGTLRLLFQEKQDQFAGTL 108
+ NP+VT+A + +PP+ Q++ AAG + + FA L
Sbjct: 109 GNLNPAVTLALVLAR-----AIPPFRGILMAFTQIVAGMAAAGAASAM-TPGEIAFANAL 162
Query: 109 PAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGAS 167
G S + +E T L + +A + A +G +L+ + TGA
Sbjct: 163 GGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIALLIAHLICIYYTGAG 222
Query: 168 MNPARSLGPAIVSSQYKGL-WIYIVAPPLGATAGAWVYNMVRYTD 211
+NPARS GPA+ + + WIY + P LGA ++ M ++ +
Sbjct: 223 LNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 184 KGLWIYIVAPPLGATAGAWV----YNMVRYTD 211
G W+YIVA AGAWV N++R +D
Sbjct: 104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSD 135
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 186 LWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS 222
L I ++P LG +AG W + +TDK L K+ +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGA 248
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 186 LWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS 222
L I ++P LG +AG W + +TDK L K+ +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGA 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,391,196
Number of Sequences: 62578
Number of extensions: 245946
Number of successful extensions: 840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 68
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)